AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1286290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1286290 MtrunA17_Chr8g0361661 96.207 290 5 4 1 290 1 284 0.0 558
Msa1286290 MtrunA17_Chr5g0417141 73.986 296 65 7 1 290 1 290 2.01e-125 359
Msa1286290 MtrunA17_Chr1g0208551 37.500 264 140 5 1 257 1 246 1.09e-57 186
Msa1286290 MtrunA17_Chr7g0269921 39.037 187 101 5 67 249 17 194 3.60e-39 137
Msa1286290 MtrunA17_Chr7g0251421 35.897 195 111 7 68 258 14 198 8.03e-38 133
Msa1286290 MtrunA17_Chr1g0194751 42.771 166 88 4 67 227 17 180 6.45e-31 115
Msa1286290 MtrunA17_Chr7g0217321 30.286 175 111 4 66 240 31 194 7.71e-24 96.7
Msa1286290 MtrunA17_Chr1g0181371 39.286 84 43 3 39 120 235 312 3.88e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1286290 AT2G02960.3 67.917 240 69 4 57 294 33 266 1.91e-100 295
Msa1286290 AT2G02960.2 67.917 240 69 4 57 294 33 266 1.91e-100 295
Msa1286290 AT2G02960.6 67.917 240 69 4 57 294 33 266 1.91e-100 295
Msa1286290 AT2G02960.4 67.917 240 69 4 57 294 33 266 1.91e-100 295
Msa1286290 AT2G02960.1 67.917 240 69 4 57 294 33 266 1.91e-100 295
Msa1286290 AT3G47550.3 54.392 296 113 7 1 285 1 285 4.33e-90 270
Msa1286290 AT3G47550.6 54.392 296 113 7 1 285 1 285 4.33e-90 270
Msa1286290 AT1G14260.2 59.701 268 89 5 4 269 5 255 2.76e-86 259
Msa1286290 AT1G14260.1 59.701 268 89 5 4 269 5 255 2.76e-86 259
Msa1286290 AT1G14260.3 59.701 268 89 5 4 269 5 255 2.76e-86 259
Msa1286290 AT5G62460.3 70.000 240 57 6 57 287 81 314 3.14e-86 261
Msa1286290 AT5G62460.1 70.000 240 57 6 57 287 68 301 3.79e-86 260
Msa1286290 AT5G62460.2 70.000 240 57 6 57 287 68 301 3.79e-86 260
Msa1286290 AT3G47550.2 54.582 251 94 6 1 242 1 240 1.80e-77 236
Msa1286290 AT2G02960.5 71.812 149 37 2 57 205 33 176 2.33e-64 204
Msa1286290 AT3G47550.1 50.218 229 94 6 1 220 1 218 4.14e-60 191
Msa1286290 AT2G01275.3 38.934 244 130 3 1 244 27 251 1.47e-53 176
Msa1286290 AT2G01275.5 38.934 244 130 3 1 244 27 251 1.47e-53 176
Msa1286290 AT2G01275.2 38.934 244 130 3 1 244 1 225 1.67e-53 175
Msa1286290 AT2G01275.4 38.934 244 130 3 1 244 1 225 1.67e-53 175
Msa1286290 AT2G01275.1 38.934 244 130 3 1 244 1 225 1.67e-53 175
Msa1286290 AT5G38070.1 36.255 251 137 5 1 251 1 228 5.24e-42 145
Msa1286290 AT4G02075.1 36.702 188 102 4 64 249 14 186 1.29e-33 122
Msa1286290 AT4G02075.3 36.702 188 102 4 64 249 14 186 1.33e-33 122
Msa1286290 AT1G02610.2 34.375 192 119 3 58 249 9 193 6.44e-32 117
Msa1286290 AT1G02610.1 34.375 192 119 3 58 249 9 193 6.92e-32 118
Msa1286290 AT4G02075.2 39.024 164 82 4 64 223 14 163 1.98e-26 102
Msa1286290 AT4G32670.2 40.260 77 41 2 45 120 12 84 1.64e-11 65.1
Msa1286290 AT4G32670.1 40.260 77 41 2 45 120 12 84 1.64e-11 65.1

Find 112 sgRNAs with CRISPR-Local

Find 194 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAATAATAACTTTATTTAT+TGG 0.168463 8_3:+33938602 Msa1286290:three_prime_UTR
TAGTGTTCGGTGGTGGAATT+TGG 0.173465 8_3:-33935649 None:intergenic
CATTCACCGGCTGGGCCTTC+GGG 0.238857 8_3:+33936032 Msa1286290:CDS
GCGCGTGCCTCAAGAGTAAA+AGG 0.240504 8_3:-33937784 None:intergenic
TCATTCACCGGCTGGGCCTT+CGG 0.254316 8_3:+33936031 Msa1286290:CDS
GACAGACTCACCGAAGAAAA+AGG 0.258705 8_3:-33935760 None:intergenic
AATTGGATTCGGCGTATATA+TGG 0.277129 8_3:-33935690 None:intergenic
ATACAAACTACACTTGTTCT+TGG 0.287927 8_3:-33938416 None:intergenic
GTTCTTGGTACACTTGTTCT+TGG 0.298134 8_3:-33938401 None:intergenic
CAACGCTGGTGCAACGAAAA+AGG 0.305135 8_3:+33936959 Msa1286290:CDS
CATATTCAGCTTCGAAGAAT+TGG 0.316433 8_3:-33937508 None:intergenic
GAAGAAACTACCATAGATAT+AGG 0.327532 8_3:+33937275 Msa1286290:CDS
ATATCTATGGTAGTTTCTTC+AGG 0.329248 8_3:-33937272 None:intergenic
GGAGGATGGTATTGATAATC+TGG 0.332839 8_3:+33936145 Msa1286290:CDS
GTTGCTTTCGTGCTACAATC+TGG 0.341099 8_3:+33938318 Msa1286290:CDS
GACACTCTCTGGCACGCCTT+TGG 0.362869 8_3:+33937442 Msa1286290:CDS
ATCACCGGCGGCATCGGTTC+AGG 0.365743 8_3:-33936008 None:intergenic
CACGGTTGCTGCTGGTGTTA+TGG 0.367886 8_3:-33938364 None:intergenic
TACCTTGCTATATCATGGCT+TGG 0.375698 8_3:+33938000 Msa1286290:CDS
CGCCTGTAGCGGAAGTCTTA+AGG 0.384567 8_3:+33936178 Msa1286290:CDS
AAGAAGGGAAGAGAGAGAAT+TGG 0.386729 8_3:-33935707 None:intergenic
TTAATCTTACCCTATATCTA+TGG 0.389900 8_3:-33937285 None:intergenic
TGTTGAGCCAACGGCTCAAC+CGG 0.390160 8_3:-33935969 None:intergenic
AAGTGTAGTTTGTATGGAAA+TGG 0.400654 8_3:+33938424 Msa1286290:exon
AGTGTTCGGTGGTGGAATTT+GGG 0.403288 8_3:-33935648 None:intergenic
AAGAACAAGTGTAGTTTGTA+TGG 0.407359 8_3:+33938418 Msa1286290:exon
AACATTCTTGCAGCGGAGGC+TGG 0.408803 8_3:+33937420 Msa1286290:intron
CCGGCATCGGTCGCATTAAT+CGG 0.412341 8_3:-33935950 None:intergenic
ACCTTGCTATATCATGGCTT+GGG 0.419793 8_3:+33938001 Msa1286290:CDS
TTAAAATGAAATTAGATTGA+GGG 0.420346 8_3:-33938552 None:intergenic
AGCGGAGGCTGGACACTCTC+TGG 0.428867 8_3:+33937431 Msa1286290:intron
AAGAAACTACCATAGATATA+GGG 0.430184 8_3:+33937276 Msa1286290:CDS
CCGGTGATTCATTCACCGGC+TGG 0.431407 8_3:+33936023 Msa1286290:CDS
TTGGTGTGGGTGCGGATTCA+CGG 0.440637 8_3:-33938382 None:intergenic
CGATCATGTGGTGTTGTTTG+TGG 0.446181 8_3:+33935926 Msa1286290:CDS
GGTACACTTGTTCTTGGTGT+GGG 0.446462 8_3:-33938395 None:intergenic
TTTAAAATGAAATTAGATTG+AGG 0.448859 8_3:-33938553 None:intergenic
CCGATTAATGCGACCGATGC+CGG 0.458371 8_3:+33935950 Msa1286290:CDS
TGCGGATTCACGGTTGCTGC+TGG 0.464087 8_3:-33938372 None:intergenic
GGCGGCATCGGTTCAGGAGC+AGG 0.464476 8_3:-33936002 None:intergenic
GGTGGTGGAGCAATATAATC+AGG 0.464702 8_3:-33937239 None:intergenic
GTTTATAGAGTGAGAAAGAA+GGG 0.465564 8_3:-33935722 None:intergenic
GGTTCAGGAGCAGGCTGAGC+CGG 0.472619 8_3:-33935993 None:intergenic
GCTACAATCTGGGCAGCATA+GGG 0.473645 8_3:+33938329 Msa1286290:CDS
ACCGATGCCGGTTGAGCCGT+TGG 0.474368 8_3:+33935962 Msa1286290:CDS
AACATGTGAAATTTGTCATA+AGG 0.477069 8_3:+33936988 Msa1286290:CDS
CGAGCCGCTGTTGCAGCAGA+TGG 0.477787 8_3:+33936094 Msa1286290:CDS
ATTGGATTCGGCGTATATAT+GGG 0.479887 8_3:-33935689 None:intergenic
TGAGCCGTTGGCTCAACATC+CGG 0.480048 8_3:+33935974 Msa1286290:CDS
TCAGGATGTGGACGAGGTGG+TGG 0.480833 8_3:-33937254 None:intergenic
ATTTGGGAACAACGTGGAAA+AGG 0.481835 8_3:-33935632 None:intergenic
ACAGGAGGCTGCAGCATTGG+CGG 0.488662 8_3:+33938287 Msa1286290:intron
GGCTGAGTGTAGGATTTGTC+AGG 0.492601 8_3:+33936121 Msa1286290:CDS
ATGGTAGTTTCTTCAGGATG+TGG 0.493224 8_3:-33937266 None:intergenic
ATTGTAGCACGAAAGCAACT+TGG 0.495200 8_3:-33938314 None:intergenic
AATACAGGAGGCTGCAGCAT+TGG 0.499752 8_3:+33938284 Msa1286290:intron
CTTGCGTGATCCTCGATTGT+TGG 0.500268 8_3:+33937466 Msa1286290:CDS
GTTATATTAGAATTAGAGCC+GGG 0.500305 8_3:-33938506 None:intergenic
GGTTTATAGAGTGAGAAAGA+AGG 0.500793 8_3:-33935723 None:intergenic
TTCGGGTTCTTCTTCAGCGA+CGG 0.501494 8_3:+33936049 Msa1286290:CDS
GGAAGAGAGAGAATTGGATT+CGG 0.501846 8_3:-33935701 None:intergenic
TGGTACACTTGTTCTTGGTG+TGG 0.502199 8_3:-33938396 None:intergenic
TTGCTTTCGTGCTACAATCT+GGG 0.503156 8_3:+33938319 Msa1286290:CDS
TACCTTAAGACTTCCGCTAC+AGG 0.504196 8_3:-33936180 None:intergenic
GAATGAATCACCGGCGGCAT+CGG 0.507695 8_3:-33936014 None:intergenic
GAAAGGTTAACGTTAGTGTT+CGG 0.514852 8_3:-33935662 None:intergenic
GAGGCACGCGCTTTCTGTCA+CGG 0.518453 8_3:+33937796 Msa1286290:CDS
TTCTTCGAAGCTGAATATGA+TGG 0.519355 8_3:+33937512 Msa1286290:CDS
CGGTGATTCATTCACCGGCT+GGG 0.519534 8_3:+33936024 Msa1286290:CDS
ACTTGTTCTTGGTGTGGGTG+CGG 0.521600 8_3:-33938390 None:intergenic
TTAACGTTAGTGTTCGGTGG+TGG 0.521659 8_3:-33935656 None:intergenic
GAAGAACCCGAAGGCCCAGC+CGG 0.522173 8_3:-33936038 None:intergenic
ATCTCCATCTGCTGCAACAG+CGG 0.524481 8_3:-33936098 None:intergenic
GCCGCCGGTGATTCATTCAC+CGG 0.532546 8_3:+33936019 Msa1286290:CDS
TGCTCCTGAACCGATGCCGC+CGG 0.532957 8_3:+33936004 Msa1286290:CDS
AGTTATATTAGAATTAGAGC+CGG 0.543436 8_3:-33938507 None:intergenic
AGCAATATAATCAGGTTCAT+AGG 0.549152 8_3:-33937231 None:intergenic
ATAGAAAGTGCGTCCAACGC+TGG 0.549813 8_3:+33936945 Msa1286290:CDS
TGCTACAATCTGGGCAGCAT+AGG 0.553716 8_3:+33938328 Msa1286290:CDS
AACGTGGAAAAGGACATTAT+AGG 0.561223 8_3:-33935622 None:intergenic
ACGGCAAAATGCAGCTCCGT+TGG 0.561312 8_3:-33937552 None:intergenic
GCCAACGGCTCAACCGGCAT+CGG 0.561647 8_3:-33935963 None:intergenic
GTTTCTTCAGGATGTGGACG+AGG 0.562462 8_3:-33937260 None:intergenic
AGACTTCCGCTACAGGCGCA+AGG 0.568684 8_3:-33936173 None:intergenic
TTGTAGCACGAAAGCAACTT+GGG 0.569577 8_3:-33938313 None:intergenic
AGGATTTGTCAGGAGGAGGA+TGG 0.574659 8_3:+33936131 Msa1286290:CDS
GTGTAGGATTTGTCAGGAGG+AGG 0.581312 8_3:+33936127 Msa1286290:CDS
GCGACGGATGATGACGATGT+AGG 0.584691 8_3:+33936065 Msa1286290:CDS
TGAGCCGGATGTTGAGCCAA+CGG 0.587025 8_3:-33935978 None:intergenic
GCTGTTGCAGCAGATGGAGA+TGG 0.590554 8_3:+33936100 Msa1286290:CDS
CCAGCCGGTGAATGAATCAC+CGG 0.593661 8_3:-33936023 None:intergenic
GAGAATCCTTGCGCCTGTAG+CGG 0.594462 8_3:+33936167 Msa1286290:CDS
GCGTATATATGGGAAGAGAA+AGG 0.596190 8_3:-33935679 None:intergenic
AGATGGAGATGGCTGAGTGT+AGG 0.601452 8_3:+33936111 Msa1286290:CDS
TCGATTGTTGGCAATTGCAG+AGG 0.603328 8_3:+33937478 Msa1286290:CDS
TTACGATCAGAGCAGCTGAA+CGG 0.606397 8_3:-33937571 None:intergenic
CGCGTGCCTCAAGAGTAAAA+GGG 0.611961 8_3:-33937783 None:intergenic
CGAGGATCACGCAAGTCCAA+AGG 0.614034 8_3:-33937458 None:intergenic
TCTTCAGGATGTGGACGAGG+TGG 0.627168 8_3:-33937257 None:intergenic
AGGTTAACGTTAGTGTTCGG+TGG 0.627205 8_3:-33935659 None:intergenic
GCCCAAGCCATGATATAGCA+AGG 0.629507 8_3:-33938002 None:intergenic
TCTGCAATTGCCAACAATCG+AGG 0.633472 8_3:-33937476 None:intergenic
AATGATGAGCAAGAGTAGCA+TGG 0.635348 8_3:-33938481 None:intergenic
TATGCTGCTTCTAATGCCAA+CGG 0.637155 8_3:+33937536 Msa1286290:CDS
TGAGTGTAGGATTTGTCAGG+AGG 0.657795 8_3:+33936124 Msa1286290:CDS
GCCGGTGAATGAATCACCGG+CGG 0.662712 8_3:-33936020 None:intergenic
TGAATCAATGAGCGATCATG+TGG 0.669095 8_3:+33935914 Msa1286290:exon
GGATGATGACGATGTAGGCG+AGG 0.676408 8_3:+33936070 Msa1286290:CDS
GCAAGGTAAAAGAAAGCCAG+CGG 0.689230 8_3:-33937985 None:intergenic
CTACAATCTGGGCAGCATAG+GGG 0.695813 8_3:+33938330 Msa1286290:CDS
GTCGCTGAAGAAGAACCCGA+AGG 0.704233 8_3:-33936047 None:intergenic
GGTGGAATTTGGGAACAACG+TGG 0.738538 8_3:-33935638 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAATTACAAATTAGAAA+AGG - chr8_3:33935850-33935869 None:intergenic 10.0%
!!! TTTTTTTATTAAATGATACA+TGG + chr8_3:33936312-33936331 Msa1286290:intron 10.0%
!!! AAATAATAAATTTGCTTACA+AGG + chr8_3:33936543-33936562 Msa1286290:intron 15.0%
!! ATACAAATAATCAGTTAAAA+AGG - chr8_3:33937614-33937633 None:intergenic 15.0%
!! TTAAAATGAAATTAGATTGA+GGG - chr8_3:33938555-33938574 None:intergenic 15.0%
!!! TTTAAAATGAAATTAGATTG+AGG - chr8_3:33938556-33938575 None:intergenic 15.0%
!!! TGTTACAAATTTCATGTTTT+AGG + chr8_3:33936233-33936252 Msa1286290:intron 20.0%
!! TAAGAATTAACATAGTAAAG+TGG + chr8_3:33936666-33936685 Msa1286290:intron 20.0%
!! AAGAATTAACATAGTAAAGT+GGG + chr8_3:33936667-33936686 Msa1286290:intron 20.0%
!! ATGTATATCATAACATTGTA+TGG + chr8_3:33937036-33937055 Msa1286290:intron 20.0%
!! AACTGATTATTTGTATAATC+CGG + chr8_3:33937618-33937637 Msa1286290:intron 20.0%
!! TACAAACTTTATACAATTGA+TGG + chr8_3:33937891-33937910 Msa1286290:intron 20.0%
!! ACAAACTTTATACAATTGAT+GGG + chr8_3:33937892-33937911 Msa1286290:intron 20.0%
!!! ATTCTTATCATTTCATGTTT+TGG + chr8_3:33938260-33938279 Msa1286290:intron 20.0%
!! ATTCTGTTCAAAAAAGATAT+TGG + chr8_3:33938654-33938673 Msa1286290:three_prime_UTR 20.0%
! TACAAATTAGAAAAGGAAGA+AGG - chr8_3:33935843-33935862 None:intergenic 25.0%
!!! TACAAATTTCATGTTTTAGG+TGG + chr8_3:33936236-33936255 Msa1286290:intron 25.0%
! TATTAAATGATACATGGATG+TGG + chr8_3:33936318-33936337 Msa1286290:intron 25.0%
! TTTATTCTGTTATGCTTTGA+TGG + chr8_3:33936375-33936394 Msa1286290:intron 25.0%
!!! GTTAAACAATTTTAACGAAC+AGG + chr8_3:33936435-33936454 Msa1286290:intron 25.0%
! TTTCATCACATAGATAATTG+CGG + chr8_3:33936635-33936654 Msa1286290:intron 25.0%
! TTATGTAAGTGTCAAAAGAT+TGG - chr8_3:33936778-33936797 None:intergenic 25.0%
! AACATGTGAAATTTGTCATA+AGG + chr8_3:33936988-33937007 Msa1286290:CDS 25.0%
!!! CATTGTATGGTTTTGTTTAT+AGG + chr8_3:33937049-33937068 Msa1286290:intron 25.0%
! AAGAAACTACCATAGATATA+GGG + chr8_3:33937276-33937295 Msa1286290:CDS 25.0%
! TTAATCTTACCCTATATCTA+TGG - chr8_3:33937288-33937307 None:intergenic 25.0%
! TGTATAACCATAATTCTTGA+GGG - chr8_3:33937334-33937353 None:intergenic 25.0%
! ATGTATAACCATAATTCTTG+AGG - chr8_3:33937335-33937354 None:intergenic 25.0%
! CATTTACAAAATTGTATGTC+TGG - chr8_3:33937659-33937678 None:intergenic 25.0%
!! CAATTTTGTAAATGAACTCT+AGG + chr8_3:33937665-33937684 Msa1286290:intron 25.0%
! TTTCGTAAATAACAATGTCT+AGG - chr8_3:33938111-33938130 None:intergenic 25.0%
! TGAAATGATAAGAATACTGT+AGG - chr8_3:33938255-33938274 None:intergenic 25.0%
!!! ATTTCATGTTTTGGTAATAC+AGG + chr8_3:33938269-33938288 Msa1286290:intron 25.0%
!! TTCAACAAGTCAATTTTACA+TGG - chr8_3:33938458-33938477 None:intergenic 25.0%
! AGTTATATTAGAATTAGAGC+CGG - chr8_3:33938510-33938529 None:intergenic 25.0%
GTTTATAGAGTGAGAAAGAA+GGG - chr8_3:33935725-33935744 None:intergenic 30.0%
! GGATATTGATTAGATGTGAT+TGG + chr8_3:33936688-33936707 Msa1286290:intron 30.0%
!!! GTATGGTTTTGTTTATAGGT+AGG + chr8_3:33937053-33937072 Msa1286290:intron 30.0%
AGCAATATAATCAGGTTCAT+AGG - chr8_3:33937234-33937253 None:intergenic 30.0%
ATATCTATGGTAGTTTCTTC+AGG - chr8_3:33937275-33937294 None:intergenic 30.0%
GAAGAAACTACCATAGATAT+AGG + chr8_3:33937275-33937294 Msa1286290:CDS 30.0%
ACCAGAACATAGAATGAATT+AGG - chr8_3:33937752-33937771 None:intergenic 30.0%
CTTACAGAGAAAAACATAGA+TGG - chr8_3:33937842-33937861 None:intergenic 30.0%
TTGTAAACTACATAGACAGA+AGG - chr8_3:33937876-33937895 None:intergenic 30.0%
!! TCTTTTACCTTGCTATATCA+TGG + chr8_3:33937995-33938014 Msa1286290:CDS 30.0%
ATACAAACTACACTTGTTCT+TGG - chr8_3:33938419-33938438 None:intergenic 30.0%
! AAGAACAAGTGTAGTTTGTA+TGG + chr8_3:33938418-33938437 Msa1286290:exon 30.0%
! AAGTGTAGTTTGTATGGAAA+TGG + chr8_3:33938424-33938443 Msa1286290:exon 30.0%
GTTATATTAGAATTAGAGCC+GGG - chr8_3:33938509-33938528 None:intergenic 30.0%
AACGTGGAAAAGGACATTAT+AGG - chr8_3:33935625-33935644 None:intergenic 35.0%
GAAAGGTTAACGTTAGTGTT+CGG - chr8_3:33935665-33935684 None:intergenic 35.0%
ATTGGATTCGGCGTATATAT+GGG - chr8_3:33935692-33935711 None:intergenic 35.0%
AATTGGATTCGGCGTATATA+TGG - chr8_3:33935693-33935712 None:intergenic 35.0%
GGTTTATAGAGTGAGAAAGA+AGG - chr8_3:33935726-33935745 None:intergenic 35.0%
AAAAAGGGAAGAGACAAGAA+GGG - chr8_3:33935747-33935766 None:intergenic 35.0%
! TTGTCTCTTCCCTTTTTCTT+CGG + chr8_3:33935750-33935769 Msa1286290:five_prime_UTR 35.0%
ATGATACATGGATGTGGAAA+AGG + chr8_3:33936324-33936343 Msa1286290:intron 35.0%
CATTGATGTTAGAGAGCTAT+TGG + chr8_3:33936460-33936479 Msa1286290:intron 35.0%
! GCTTACAAGGTTTTCTTCAT+AGG + chr8_3:33936556-33936575 Msa1286290:intron 35.0%
TCAAACACTCTCTTAGTAAC+CGG + chr8_3:33936833-33936852 Msa1286290:intron 35.0%
TTAGGAGGACATAAATAGAG+AGG - chr8_3:33936889-33936908 None:intergenic 35.0%
TATCCAGCAGTTCGTAAATT+AGG - chr8_3:33936907-33936926 None:intergenic 35.0%
TAGTCTTCCCTCAAGAATTA+TGG + chr8_3:33937324-33937343 Msa1286290:intron 35.0%
AATTGTGAACATTCTTGCAG+CGG + chr8_3:33937413-33937432 Msa1286290:intron 35.0%
CATATTCAGCTTCGAAGAAT+TGG - chr8_3:33937511-33937530 None:intergenic 35.0%
TTCTTCGAAGCTGAATATGA+TGG + chr8_3:33937512-33937531 Msa1286290:CDS 35.0%
ATCAGTTAAAAAGGACTGCT+TGG - chr8_3:33937605-33937624 None:intergenic 35.0%
! TCATGCACATTGACTATGAT+AGG + chr8_3:33937692-33937711 Msa1286290:intron 35.0%
! CATGCACATTGACTATGATA+GGG + chr8_3:33937693-33937712 Msa1286290:intron 35.0%
GCCTAATTCATTCTATGTTC+TGG + chr8_3:33937748-33937767 Msa1286290:intron 35.0%
TGCTTTCAAATATGTTGTCG+AGG + chr8_3:33937916-33937935 Msa1286290:intron 35.0%
! CAATCAGTATTTTGCAACGA+CGG + chr8_3:33938024-33938043 Msa1286290:CDS 35.0%
! GTCTAGGACATGAACAAATA+TGG - chr8_3:33938095-33938114 None:intergenic 35.0%
ACGTCTTTGATCTTAAGTGT+CGG + chr8_3:33938158-33938177 Msa1286290:intron 35.0%
! ATATCTCTTGCTCCTTTTTC+CGG + chr8_3:33938203-33938222 Msa1286290:intron 35.0%
!!! TCATGTTTTGGTAATACAGG+AGG + chr8_3:33938272-33938291 Msa1286290:intron 35.0%
ATTTGGGAACAACGTGGAAA+AGG - chr8_3:33935635-33935654 None:intergenic 40.0%
GCGTATATATGGGAAGAGAA+AGG - chr8_3:33935682-33935701 None:intergenic 40.0%
GGAAGAGAGAGAATTGGATT+CGG - chr8_3:33935704-33935723 None:intergenic 40.0%
AAGAAGGGAAGAGAGAGAAT+TGG - chr8_3:33935710-33935729 None:intergenic 40.0%
GAAAAAGGGAAGAGACAAGA+AGG - chr8_3:33935748-33935767 None:intergenic 40.0%
ACAGACTCACCGAAGAAAAA+GGG - chr8_3:33935762-33935781 None:intergenic 40.0%
TCACGATCTCGAGAAAATGA+AGG - chr8_3:33935793-33935812 None:intergenic 40.0%
! GAAATTTTCTCGAGATCGTG+TGG - chr8_3:33935819-33935838 None:intergenic 40.0%
TGAATCAATGAGCGATCATG+TGG + chr8_3:33935914-33935933 Msa1286290:exon 40.0%
!! GGAGGATGGTATTGATAATC+TGG + chr8_3:33936145-33936164 Msa1286290:CDS 40.0%
! CAAGGTTTTCTTCATAGGCT+TGG + chr8_3:33936561-33936580 Msa1286290:intron 40.0%
! CTCTATCTGTGTTTTGTGCA+AGG - chr8_3:33936743-33936762 None:intergenic 40.0%
CAAACACTCTCTTAGTAACC+GGG + chr8_3:33936834-33936853 Msa1286290:intron 40.0%
!! AATTCACACAGAGAGTGCTT+TGG - chr8_3:33937149-33937168 None:intergenic 40.0%
ATGGTAGTTTCTTCAGGATG+TGG - chr8_3:33937269-33937288 None:intergenic 40.0%
AGCAATCTGTTTCAAGCTGA+TGG + chr8_3:33937356-33937375 Msa1286290:intron 40.0%
! TATGCTGCTTCTAATGCCAA+CGG + chr8_3:33937536-33937555 Msa1286290:CDS 40.0%
CTATGTTCTGGTGCAGTTAA+TGG + chr8_3:33937760-33937779 Msa1286290:intron 40.0%
! TAATGGCCCTTTTACTCTTG+AGG + chr8_3:33937777-33937796 Msa1286290:CDS 40.0%
! TACCTTGCTATATCATGGCT+TGG + chr8_3:33938000-33938019 Msa1286290:CDS 40.0%
! ACCTTGCTATATCATGGCTT+GGG + chr8_3:33938001-33938020 Msa1286290:CDS 40.0%
! TATCTCTTGCTCCTTTTTCC+GGG + chr8_3:33938204-33938223 Msa1286290:intron 40.0%
TGTTGCATATTCCCGGAAAA+AGG - chr8_3:33938218-33938237 None:intergenic 40.0%
! CTGCATTTGTTGCATATTCC+CGG - chr8_3:33938225-33938244 None:intergenic 40.0%
TTGTAGCACGAAAGCAACTT+GGG - chr8_3:33938316-33938335 None:intergenic 40.0%
ATTGTAGCACGAAAGCAACT+TGG - chr8_3:33938317-33938336 None:intergenic 40.0%
TTGCTTTCGTGCTACAATCT+GGG + chr8_3:33938319-33938338 Msa1286290:CDS 40.0%
GTTCTTGGTACACTTGTTCT+TGG - chr8_3:33938404-33938423 None:intergenic 40.0%
AATGATGAGCAAGAGTAGCA+TGG - chr8_3:33938484-33938503 None:intergenic 40.0%
! ACTCTTGCTCATCATTTTCC+CGG + chr8_3:33938488-33938507 Msa1286290:three_prime_UTR 40.0%
!! AGTGTTCGGTGGTGGAATTT+GGG - chr8_3:33935651-33935670 None:intergenic 45.0%
!! TAGTGTTCGGTGGTGGAATT+TGG - chr8_3:33935652-33935671 None:intergenic 45.0%
! TTAACGTTAGTGTTCGGTGG+TGG - chr8_3:33935659-33935678 None:intergenic 45.0%
AGGTTAACGTTAGTGTTCGG+TGG - chr8_3:33935662-33935681 None:intergenic 45.0%
GACAGACTCACCGAAGAAAA+AGG - chr8_3:33935763-33935782 None:intergenic 45.0%
!! CGATCATGTGGTGTTGTTTG+TGG + chr8_3:33935926-33935945 Msa1286290:CDS 45.0%
TGAGTGTAGGATTTGTCAGG+AGG + chr8_3:33936124-33936143 Msa1286290:CDS 45.0%
TACCTTAAGACTTCCGCTAC+AGG - chr8_3:33936183-33936202 None:intergenic 45.0%
TGCCTTTGTGTATGGGACAT+TGG + chr8_3:33936860-33936879 Msa1286290:intron 45.0%
CACCAATGTCCCATACACAA+AGG - chr8_3:33936865-33936884 None:intergenic 45.0%
CCAGCAGTTCGTAAATTAGG+AGG - chr8_3:33936904-33936923 None:intergenic 45.0%
CCTCCTAATTTACGAACTGC+TGG + chr8_3:33936901-33936920 Msa1286290:intron 45.0%
!! GGTGGTGGAGCAATATAATC+AGG - chr8_3:33937242-33937261 None:intergenic 45.0%
TCTGCAATTGCCAACAATCG+AGG - chr8_3:33937479-33937498 None:intergenic 45.0%
TCGATTGTTGGCAATTGCAG+AGG + chr8_3:33937478-33937497 Msa1286290:CDS 45.0%
TTACGATCAGAGCAGCTGAA+CGG - chr8_3:33937574-33937593 None:intergenic 45.0%
GGGTGCTAACACTTTACACT+TGG + chr8_3:33937713-33937732 Msa1286290:intron 45.0%
GCAAGGTAAAAGAAAGCCAG+CGG - chr8_3:33937988-33938007 None:intergenic 45.0%
! GTTGCTTTCGTGCTACAATC+TGG + chr8_3:33938318-33938337 Msa1286290:CDS 45.0%
! GGTACACTTGTTCTTGGTGT+GGG - chr8_3:33938398-33938417 None:intergenic 45.0%
TGGTACACTTGTTCTTGGTG+TGG - chr8_3:33938399-33938418 None:intergenic 45.0%
!!! ATAATAATAACTTTATTTAT+TGG + chr8_3:33938602-33938621 Msa1286290:three_prime_UTR 5.0%
GGTGGAATTTGGGAACAACG+TGG - chr8_3:33935641-33935660 None:intergenic 50.0%
! TTCGGGTTCTTCTTCAGCGA+CGG + chr8_3:33936049-33936068 Msa1286290:CDS 50.0%
ATCTCCATCTGCTGCAACAG+CGG - chr8_3:33936101-33936120 None:intergenic 50.0%
AGATGGAGATGGCTGAGTGT+AGG + chr8_3:33936111-33936130 Msa1286290:CDS 50.0%
GGCTGAGTGTAGGATTTGTC+AGG + chr8_3:33936121-33936140 Msa1286290:CDS 50.0%
GTGTAGGATTTGTCAGGAGG+AGG + chr8_3:33936127-33936146 Msa1286290:CDS 50.0%
AGGATTTGTCAGGAGGAGGA+TGG + chr8_3:33936131-33936150 Msa1286290:CDS 50.0%
!! CCATACACAAAGGCATTGCC+CGG - chr8_3:33936855-33936874 None:intergenic 50.0%
CGGGCAATGCCTTTGTGTAT+GGG + chr8_3:33936853-33936872 Msa1286290:intron 50.0%
! ATAGAAAGTGCGTCCAACGC+TGG + chr8_3:33936945-33936964 Msa1286290:CDS 50.0%
!! CTTTTTCGTTGCACCAGCGT+TGG - chr8_3:33936961-33936980 None:intergenic 50.0%
CAACGCTGGTGCAACGAAAA+AGG + chr8_3:33936959-33936978 Msa1286290:CDS 50.0%
GTTTCTTCAGGATGTGGACG+AGG - chr8_3:33937263-33937282 None:intergenic 50.0%
TGTGAACATTCTTGCAGCGG+AGG + chr8_3:33937416-33937435 Msa1286290:intron 50.0%
CTTGCGTGATCCTCGATTGT+TGG + chr8_3:33937466-33937485 Msa1286290:CDS 50.0%
CTGGTGCGCATATACATGAC+CGG - chr8_3:33937640-33937659 None:intergenic 50.0%
CGCGTGCCTCAAGAGTAAAA+GGG - chr8_3:33937786-33937805 None:intergenic 50.0%
GCCCAAGCCATGATATAGCA+AGG - chr8_3:33938005-33938024 None:intergenic 50.0%
AATACAGGAGGCTGCAGCAT+TGG + chr8_3:33938284-33938303 Msa1286290:intron 50.0%
TGCTACAATCTGGGCAGCAT+AGG + chr8_3:33938328-33938347 Msa1286290:CDS 50.0%
GCTACAATCTGGGCAGCATA+GGG + chr8_3:33938329-33938348 Msa1286290:CDS 50.0%
CTACAATCTGGGCAGCATAG+GGG + chr8_3:33938330-33938349 Msa1286290:CDS 50.0%
! ACTTGTTCTTGGTGTGGGTG+CGG - chr8_3:33938393-33938412 None:intergenic 50.0%
!! CCGGCATCGGTCGCATTAAT+CGG - chr8_3:33935953-33935972 None:intergenic 55.0%
CCGATTAATGCGACCGATGC+CGG + chr8_3:33935950-33935969 Msa1286290:CDS 55.0%
TGTTGAGCCAACGGCTCAAC+CGG - chr8_3:33935972-33935991 None:intergenic 55.0%
!! TGAGCCGTTGGCTCAACATC+CGG + chr8_3:33935974-33935993 Msa1286290:CDS 55.0%
TGAGCCGGATGTTGAGCCAA+CGG - chr8_3:33935981-33936000 None:intergenic 55.0%
GAATGAATCACCGGCGGCAT+CGG - chr8_3:33936017-33936036 None:intergenic 55.0%
CCAGCCGGTGAATGAATCAC+CGG - chr8_3:33936026-33936045 None:intergenic 55.0%
! CGGTGATTCATTCACCGGCT+GGG + chr8_3:33936024-33936043 Msa1286290:CDS 55.0%
GTCGCTGAAGAAGAACCCGA+AGG - chr8_3:33936050-33936069 None:intergenic 55.0%
! GCGACGGATGATGACGATGT+AGG + chr8_3:33936065-33936084 Msa1286290:CDS 55.0%
! GGATGATGACGATGTAGGCG+AGG + chr8_3:33936070-33936089 Msa1286290:CDS 55.0%
GCTGTTGCAGCAGATGGAGA+TGG + chr8_3:33936100-33936119 Msa1286290:CDS 55.0%
GAGAATCCTTGCGCCTGTAG+CGG + chr8_3:33936167-33936186 Msa1286290:CDS 55.0%
! CGCCTGTAGCGGAAGTCTTA+AGG + chr8_3:33936178-33936197 Msa1286290:CDS 55.0%
CCGGGCAATGCCTTTGTGTA+TGG + chr8_3:33936852-33936871 Msa1286290:intron 55.0%
TCTTCAGGATGTGGACGAGG+TGG - chr8_3:33937260-33937279 None:intergenic 55.0%
AACATTCTTGCAGCGGAGGC+TGG + chr8_3:33937420-33937439 Msa1286290:intron 55.0%
CGAGGATCACGCAAGTCCAA+AGG - chr8_3:33937461-33937480 None:intergenic 55.0%
ACGGCAAAATGCAGCTCCGT+TGG - chr8_3:33937555-33937574 None:intergenic 55.0%
GCGCGTGCCTCAAGAGTAAA+AGG - chr8_3:33937787-33937806 None:intergenic 55.0%
! CTTTTCTTGCTTCGAGCCGC+TGG + chr8_3:33937969-33937988 Msa1286290:CDS 55.0%
! CACGGTTGCTGCTGGTGTTA+TGG - chr8_3:33938367-33938386 None:intergenic 55.0%
TTGGTGTGGGTGCGGATTCA+CGG - chr8_3:33938385-33938404 None:intergenic 55.0%
GCCGCCGGTGATTCATTCAC+CGG + chr8_3:33936019-33936038 Msa1286290:CDS 60.0%
GCCGGTGAATGAATCACCGG+CGG - chr8_3:33936023-33936042 None:intergenic 60.0%
CCGGTGATTCATTCACCGGC+TGG + chr8_3:33936023-33936042 Msa1286290:CDS 60.0%
! TCATTCACCGGCTGGGCCTT+CGG + chr8_3:33936031-33936050 Msa1286290:CDS 60.0%
AGACTTCCGCTACAGGCGCA+AGG - chr8_3:33936176-33936195 None:intergenic 60.0%
TCAGGATGTGGACGAGGTGG+TGG - chr8_3:33937257-33937276 None:intergenic 60.0%
GACACTCTCTGGCACGCCTT+TGG + chr8_3:33937442-33937461 Msa1286290:CDS 60.0%
GAGGCACGCGCTTTCTGTCA+CGG + chr8_3:33937796-33937815 Msa1286290:CDS 60.0%
! ACAGGAGGCTGCAGCATTGG+CGG + chr8_3:33938287-33938306 Msa1286290:intron 60.0%
TGCGGATTCACGGTTGCTGC+TGG - chr8_3:33938375-33938394 None:intergenic 60.0%
! ACCGATGCCGGTTGAGCCGT+TGG + chr8_3:33935962-33935981 Msa1286290:CDS 65.0%
GCCAACGGCTCAACCGGCAT+CGG - chr8_3:33935966-33935985 None:intergenic 65.0%
GGTTCAGGAGCAGGCTGAGC+CGG - chr8_3:33935996-33936015 None:intergenic 65.0%
TGCTCCTGAACCGATGCCGC+CGG + chr8_3:33936004-33936023 Msa1286290:CDS 65.0%
!! ATCACCGGCGGCATCGGTTC+AGG - chr8_3:33936011-33936030 None:intergenic 65.0%
! CATTCACCGGCTGGGCCTTC+GGG + chr8_3:33936032-33936051 Msa1286290:CDS 65.0%
GAAGAACCCGAAGGCCCAGC+CGG - chr8_3:33936041-33936060 None:intergenic 65.0%
CGAGCCGCTGTTGCAGCAGA+TGG + chr8_3:33936094-33936113 Msa1286290:CDS 65.0%
AGCGGAGGCTGGACACTCTC+TGG + chr8_3:33937431-33937450 Msa1286290:intron 65.0%
!! GGCGGCATCGGTTCAGGAGC+AGG - chr8_3:33936005-33936024 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 33935612 33938691 33935612 ID=Msa1286290;Name=Msa1286290
chr8_3 mRNA 33935612 33938691 33935612 ID=Msa1286290-mRNA-1;Parent=Msa1286290;Name=Msa1286290-mRNA-1;_AED=0.14;_eAED=0.14;_QI=185|1|1|1|0.85|0.75|8|260|295
chr8_3 exon 33935612 33935771 33935612 ID=Msa1286290-mRNA-1:exon:10186;Parent=Msa1286290-mRNA-1
chr8_3 exon 33935896 33936199 33935896 ID=Msa1286290-mRNA-1:exon:10187;Parent=Msa1286290-mRNA-1
chr8_3 exon 33936938 33937009 33936938 ID=Msa1286290-mRNA-1:exon:10188;Parent=Msa1286290-mRNA-1
chr8_3 exon 33937230 33937297 33937230 ID=Msa1286290-mRNA-1:exon:10189;Parent=Msa1286290-mRNA-1
chr8_3 exon 33937433 33937589 33937433 ID=Msa1286290-mRNA-1:exon:10190;Parent=Msa1286290-mRNA-1
chr8_3 exon 33937776 33937856 33937776 ID=Msa1286290-mRNA-1:exon:10191;Parent=Msa1286290-mRNA-1
chr8_3 exon 33937969 33938058 33937969 ID=Msa1286290-mRNA-1:exon:10192;Parent=Msa1286290-mRNA-1
chr8_3 exon 33938291 33938691 33938291 ID=Msa1286290-mRNA-1:exon:10193;Parent=Msa1286290-mRNA-1
chr8_3 five_prime_UTR 33935612 33935771 33935612 ID=Msa1286290-mRNA-1:five_prime_utr;Parent=Msa1286290-mRNA-1
chr8_3 five_prime_UTR 33935896 33935920 33935896 ID=Msa1286290-mRNA-1:five_prime_utr;Parent=Msa1286290-mRNA-1
chr8_3 CDS 33935921 33936199 33935921 ID=Msa1286290-mRNA-1:cds;Parent=Msa1286290-mRNA-1
chr8_3 CDS 33936938 33937009 33936938 ID=Msa1286290-mRNA-1:cds;Parent=Msa1286290-mRNA-1
chr8_3 CDS 33937230 33937297 33937230 ID=Msa1286290-mRNA-1:cds;Parent=Msa1286290-mRNA-1
chr8_3 CDS 33937433 33937589 33937433 ID=Msa1286290-mRNA-1:cds;Parent=Msa1286290-mRNA-1
chr8_3 CDS 33937776 33937856 33937776 ID=Msa1286290-mRNA-1:cds;Parent=Msa1286290-mRNA-1
chr8_3 CDS 33937969 33938058 33937969 ID=Msa1286290-mRNA-1:cds;Parent=Msa1286290-mRNA-1
chr8_3 CDS 33938291 33938431 33938291 ID=Msa1286290-mRNA-1:cds;Parent=Msa1286290-mRNA-1
chr8_3 three_prime_UTR 33938432 33938691 33938432 ID=Msa1286290-mRNA-1:three_prime_utr;Parent=Msa1286290-mRNA-1
Gene Sequence

>Msa1286290

ATGAGCGATCATGTGGTGTTGTTTGTGGACCGATTAATGCGACCGATGCCGGTTGAGCCGTTGGCTCAACATCCGGCTCAGCCTGCTCCTGAACCGATGCCGCCGGTGATTCATTCACCGGCTGGGCCTTCGGGTTCTTCTTCAGCGACGGATGATGACGATGTAGGCGAGGACGAGCCGCTGTTGCAGCAGATGGAGATGGCTGAGTGTAGGATTTGTCAGGAGGAGGATGGTATTGATAATCTGGAGAATCCTTGCGCCTGTAGCGGAAGTCTTAAGTATGCGCATAGAAAGTGCGTCCAACGCTGGTGCAACGAAAAAGGAGACACAACATGTGAAATTTGTCATAAGTCCTATGAACCTGATTATATTGCTCCACCACCTCGTCCACATCCTGAAGAAACTACCATAGATATAGGCGGAGGCTGGACACTCTCTGGCACGCCTTTGGACTTGCGTGATCCTCGATTGTTGGCAATTGCAGAGGCAGAACGCCAATTCTTCGAAGCTGAATATGATGGATATGCTGCTTCTAATGCCAACGGAGCTGCATTTTGCCGTTCAGCTGCTCTGATCTTAATGGCCCTTTTACTCTTGAGGCACGCGCTTTCTGTCACGGATGCTGATGCTGAAGATGATCCATCTATGTTTTTCTCTCTTTTCTTGCTTCGAGCCGCTGGCTTTCTTTTACCTTGCTATATCATGGCTTGGGCAATCAGTATTTTGCAACGACGGCGACAAAGACAAGAGGCTGCAGCATTGGCGGCAACCCAAGTTGCTTTCGTGCTACAATCTGGGCAGCATAGGGGACTGCAATTTGCCATAACACCAGCAGCAACCGTGAATCCGCACCCACACCAAGAACAAGTGTACCAAGAACAAGTGTAG

Protein sequence

>Msa1286290

MSDHVVLFVDRLMRPMPVEPLAQHPAQPAPEPMPPVIHSPAGPSGSSSATDDDDVGEDEPLLQQMEMAECRICQEEDGIDNLENPCACSGSLKYAHRKCVQRWCNEKGDTTCEICHKSYEPDYIAPPPRPHPEETTIDIGGGWTLSGTPLDLRDPRLLAIAEAERQFFEAEYDGYAASNANGAAFCRSAALILMALLLLRHALSVTDADAEDDPSMFFSLFLLRAAGFLLPCYIMAWAISILQRRRQRQEAAALAATQVAFVLQSGQHRGLQFAITPAATVNPHPHQEQVYQEQV*