Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069840 | XP_003624478.1 | 98.391 | 373 | 3 | 1 | 1 | 370 | 1 | 373 | 0.0 | 740 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069840 | sp|Q9FMU6|MPCP3_ARATH | 78.904 | 365 | 69 | 2 | 7 | 363 | 2 | 366 | 0.0 | 574 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069840 | Q2HUK6 | 98.391 | 373 | 3 | 1 | 1 | 370 | 1 | 373 | 0.0 | 740 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0108750 | Msa1069840 | 0.802700 | 4.954396e-49 | -8.615850e-47 |
| Msa0606420 | Msa1069840 | 0.841806 | 3.801383e-58 | -8.615850e-47 |
| Msa0612840 | Msa1069840 | 0.814529 | 1.471148e-51 | -8.615850e-47 |
| Msa0759470 | Msa1069840 | 0.801312 | 9.555839e-49 | -8.615850e-47 |
| Msa0996830 | Msa1069840 | 0.841871 | 3.652170e-58 | -8.615850e-47 |
| Msa1069840 | Msa1222520 | 0.824176 | 9.301174e-54 | -8.615850e-47 |
| Msa1069840 | Msa1286290 | 0.814346 | 1.614511e-51 | -8.615850e-47 |
| Msa1069840 | Msa1314110 | 0.870311 | 1.605838e-66 | -8.615850e-47 |
| Msa0260230 | Msa1069840 | 0.819258 | 1.276536e-52 | -8.615850e-47 |
| Msa0494620 | Msa1069840 | 0.801430 | 9.036973e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069840 | MtrunA17_Chr7g0251981 | 98.391 | 373 | 3 | 1 | 1 | 370 | 1 | 373 | 0.0 | 740 |
| Msa1069840 | MtrunA17_Chr8g0385891 | 77.299 | 348 | 74 | 2 | 6 | 353 | 5 | 347 | 0.0 | 545 |
| Msa1069840 | MtrunA17_Chr6g0461981 | 71.633 | 349 | 89 | 2 | 11 | 358 | 3 | 342 | 0.0 | 517 |
| Msa1069840 | MtrunA17_Chr5g0407451 | 49.655 | 290 | 142 | 1 | 71 | 360 | 13 | 298 | 1.61e-101 | 302 |
| Msa1069840 | MtrunA17_Chr4g0051841 | 43.253 | 289 | 162 | 1 | 74 | 360 | 24 | 312 | 1.28e-87 | 267 |
| Msa1069840 | MtrunA17_Chr6g0463351 | 29.008 | 262 | 150 | 9 | 89 | 331 | 77 | 321 | 3.17e-16 | 79.3 |
| Msa1069840 | MtrunA17_Chr3g0137941 | 26.339 | 224 | 156 | 5 | 44 | 264 | 86 | 303 | 8.85e-16 | 78.2 |
| Msa1069840 | MtrunA17_Chr2g0296061 | 24.686 | 239 | 155 | 4 | 79 | 295 | 15 | 250 | 1.52e-13 | 70.9 |
| Msa1069840 | MtrunA17_Chr2g0296061 | 26.263 | 198 | 119 | 7 | 75 | 249 | 125 | 318 | 4.30e-11 | 63.5 |
| Msa1069840 | MtrunA17_Chr1g0149111 | 27.322 | 183 | 129 | 3 | 82 | 264 | 142 | 320 | 3.16e-13 | 70.5 |
| Msa1069840 | MtrunA17_Chr8g0372531 | 25.714 | 210 | 121 | 7 | 68 | 253 | 105 | 303 | 3.19e-13 | 69.7 |
| Msa1069840 | MtrunA17_Chr8g0347451 | 27.863 | 262 | 166 | 9 | 73 | 315 | 43 | 300 | 3.36e-13 | 70.1 |
| Msa1069840 | MtrunA17_Chr8g0347451 | 24.737 | 190 | 119 | 5 | 86 | 251 | 160 | 349 | 3.67e-12 | 67.0 |
| Msa1069840 | MtrunA17_Chr5g0396801 | 25.789 | 190 | 119 | 5 | 86 | 253 | 147 | 336 | 3.54e-13 | 70.1 |
| Msa1069840 | MtrunA17_Chr5g0396801 | 27.984 | 243 | 149 | 9 | 71 | 295 | 28 | 262 | 3.12e-12 | 67.0 |
| Msa1069840 | MtrunA17_Chr7g0252401 | 30.493 | 223 | 142 | 6 | 75 | 293 | 204 | 417 | 7.08e-13 | 69.7 |
| Msa1069840 | MtrunA17_Chr4g0067231 | 23.750 | 240 | 158 | 4 | 79 | 295 | 14 | 251 | 7.47e-13 | 68.9 |
| Msa1069840 | MtrunA17_Chr4g0067231 | 24.390 | 205 | 126 | 7 | 75 | 255 | 126 | 325 | 3.85e-11 | 63.5 |
| Msa1069840 | MtrunA17_Chr8g0385571 | 30.734 | 218 | 136 | 7 | 80 | 293 | 229 | 435 | 1.45e-12 | 68.9 |
| Msa1069840 | MtrunA17_Chr3g0131501 | 30.000 | 220 | 135 | 8 | 80 | 293 | 207 | 413 | 2.76e-12 | 67.8 |
| Msa1069840 | MtrunA17_Chr7g0269701 | 28.421 | 190 | 117 | 6 | 89 | 264 | 133 | 317 | 3.14e-12 | 67.0 |
| Msa1069840 | MtrunA17_Chr4g0063561 | 25.824 | 182 | 124 | 4 | 82 | 259 | 126 | 300 | 1.57e-11 | 65.1 |
| Msa1069840 | MtrunA17_Chr5g0431531 | 25.874 | 286 | 184 | 7 | 80 | 350 | 41 | 313 | 6.65e-11 | 62.8 |
| Msa1069840 | MtrunA17_Chr1g0195101 | 27.746 | 173 | 105 | 6 | 93 | 251 | 33 | 199 | 7.03e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1069840 | AT5G14040.1 | 78.904 | 365 | 69 | 2 | 7 | 363 | 2 | 366 | 0.0 | 574 |
| Msa1069840 | AT3G48850.1 | 68.820 | 356 | 108 | 1 | 7 | 362 | 2 | 354 | 0.0 | 510 |
| Msa1069840 | AT2G17270.1 | 50.993 | 302 | 143 | 3 | 68 | 368 | 11 | 308 | 4.86e-107 | 317 |
| Msa1069840 | AT5G66380.1 | 26.636 | 214 | 122 | 8 | 68 | 258 | 102 | 303 | 5.65e-14 | 72.4 |
| Msa1069840 | AT5G51050.1 | 29.474 | 285 | 168 | 12 | 80 | 348 | 225 | 492 | 6.70e-14 | 73.2 |
| Msa1069840 | AT1G25380.1 | 27.895 | 190 | 121 | 6 | 89 | 266 | 131 | 316 | 2.94e-13 | 70.9 |
| Msa1069840 | AT1G25380.2 | 27.895 | 190 | 121 | 6 | 89 | 266 | 131 | 316 | 2.94e-13 | 70.9 |
| Msa1069840 | AT3G53940.1 | 28.729 | 181 | 114 | 6 | 80 | 251 | 182 | 356 | 8.84e-13 | 69.3 |
| Msa1069840 | AT4G01100.2 | 25.794 | 252 | 157 | 8 | 71 | 295 | 32 | 280 | 1.39e-12 | 68.6 |
| Msa1069840 | AT1G79900.1 | 25.253 | 198 | 144 | 3 | 67 | 264 | 98 | 291 | 1.40e-12 | 68.2 |
| Msa1069840 | AT4G01100.1 | 26.778 | 239 | 157 | 8 | 71 | 295 | 32 | 266 | 1.99e-12 | 68.2 |
| Msa1069840 | AT5G48970.1 | 25.373 | 201 | 120 | 6 | 75 | 249 | 132 | 328 | 1.28e-11 | 65.5 |
| Msa1069840 | AT5G48970.1 | 23.431 | 239 | 159 | 4 | 80 | 295 | 23 | 260 | 2.94e-11 | 64.7 |
| Msa1069840 | AT5G48970.2 | 25.373 | 201 | 120 | 6 | 75 | 249 | 61 | 257 | 1.29e-11 | 64.7 |
| Msa1069840 | AT4G01100.3 | 25.571 | 219 | 149 | 6 | 88 | 295 | 1 | 216 | 3.88e-11 | 63.9 |
| Msa1069840 | AT4G32400.1 | 28.261 | 184 | 117 | 4 | 72 | 249 | 205 | 379 | 4.38e-11 | 64.3 |
| Msa1069840 | AT2G47490.1 | 27.174 | 184 | 122 | 5 | 91 | 265 | 129 | 309 | 8.69e-11 | 62.8 |
| Msa1069840 | AT1G07030.1 | 27.374 | 179 | 120 | 4 | 74 | 249 | 36 | 207 | 8.97e-11 | 62.8 |
Find 147 sgRNAs with CRISPR-Local
Find 244 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTTCCGACTTGACAAATTT+TGG | 0.064803 | 7_2:+65672703 | None:intergenic |
| GCACAGGGTGCTTGCAAATT+TGG | 0.141897 | 7_2:-65672922 | Msa1069840:CDS |
| AGCACTCCTCTGTTTATTTA+TGG | 0.158551 | 7_2:+65671116 | None:intergenic |
| CCTTTGCTGCACTCATTCTT+TGG | 0.207799 | 7_2:+65671692 | None:intergenic |
| GTAGATCAAGGTCTTGTATT+TGG | 0.240422 | 7_2:+65672843 | None:intergenic |
| AATAACAAATGCAAGAAAAT+TGG | 0.248025 | 7_2:+65671032 | None:intergenic |
| GTGAATAACCGGTAGGGTTT+TGG | 0.271570 | 7_2:+65674325 | None:intergenic |
| CACAGGGTGCTTGCAAATTT+GGG | 0.272981 | 7_2:-65672921 | Msa1069840:CDS |
| ACAAGGGATTAGTGCCTCTA+TGG | 0.295974 | 7_2:-65672549 | Msa1069840:CDS |
| ATCACCAACTGTTGCTCCTT+TGG | 0.305945 | 7_2:+65671568 | None:intergenic |
| GTCAAGTCGGAAGGAGCTTT+GGG | 0.313946 | 7_2:-65672694 | Msa1069840:CDS |
| CTGCACTCATTCTTTGGTTG+TGG | 0.319170 | 7_2:+65671698 | None:intergenic |
| CCTTCTCCTAAGGAACCTTT+TGG | 0.320200 | 7_2:-65674221 | Msa1069840:CDS |
| ACCAAGACCTCTTGCAAAAC+CGG | 0.326720 | 7_2:+65672735 | None:intergenic |
| TGCACTCATTCTTTGGTTGT+GGG | 0.330467 | 7_2:+65671699 | None:intergenic |
| TTCTATGCTGCTTGTACTGC+TGG | 0.334701 | 7_2:-65674173 | Msa1069840:CDS |
| GGCGCGGCGGCGGAAGGAGC+GGG | 0.336833 | 7_2:+65674284 | None:intergenic |
| CCGCCTTCACTCCGTGGAAC+TGG | 0.348054 | 7_2:-65674263 | Msa1069840:CDS |
| CTATAAATTGTCGTCATTGT+TGG | 0.356180 | 7_2:+65671175 | None:intergenic |
| TGTCAAGTCGGAAGGAGCTT+TGG | 0.366299 | 7_2:-65672695 | Msa1069840:CDS |
| TTTGCTGGTGGATACATTGC+TGG | 0.369619 | 7_2:-65671650 | Msa1069840:CDS |
| CGGCGCGGCGGCGGAAGGAG+CGG | 0.370068 | 7_2:+65674283 | None:intergenic |
| GTTCAAGGAGCAGGGAGTTA+AGG | 0.373432 | 7_2:-65672986 | Msa1069840:CDS |
| CGTTGCACTTTGCCCATTCG+AGG | 0.378339 | 7_2:-65672785 | Msa1069840:CDS |
| TTCAAGGAGCAGGGAGTTAA+GGG | 0.378873 | 7_2:-65672985 | Msa1069840:CDS |
| ATAGTTTGCTTAAGAAACTT+AGG | 0.383933 | 7_2:-65671156 | Msa1069840:three_prime_UTR |
| TTGTATTTGGCTGCATACTC+CGG | 0.387254 | 7_2:+65672856 | None:intergenic |
| ACTTAGGAAACCAGCGAATA+GGG | 0.387534 | 7_2:-65671140 | Msa1069840:three_prime_UTR |
| CCTCTCCGTATTGTTATGAT+TGG | 0.392836 | 7_2:-65671401 | Msa1069840:CDS |
| GTTATGATTGGAACACTTAC+CGG | 0.392999 | 7_2:-65671389 | Msa1069840:CDS |
| GGCGGCGGAAGGAGCGGGAC+CGG | 0.404628 | 7_2:+65674289 | None:intergenic |
| TCCTTTGCAATCTCTGCAAT+GGG | 0.410320 | 7_2:+65671207 | None:intergenic |
| ATTCCGGATGAAAATTAATC+AGG | 0.416921 | 7_2:+65670815 | None:intergenic |
| ATGCAGGCTGTTGCGAAGTT+TGG | 0.417122 | 7_2:-65671452 | Msa1069840:intron |
| CTGACGATCTGGTGAATAAC+CGG | 0.417433 | 7_2:+65674314 | None:intergenic |
| AAGTACAAGAGCATCTCATC+AGG | 0.418546 | 7_2:-65673021 | Msa1069840:CDS |
| GATGCTTTCAAAGTCTTTGT+GGG | 0.421116 | 7_2:-65671347 | Msa1069840:CDS |
| TTGCAAGAGGTCTTGGTGAT+GGG | 0.421210 | 7_2:-65672729 | Msa1069840:CDS |
| TGGTGCAAAAGCAAAAGAAT+TGG | 0.421691 | 7_2:-65674486 | Msa1069840:five_prime_UTR |
| AACTTAGGAAACCAGCGAAT+AGG | 0.424333 | 7_2:-65671141 | Msa1069840:three_prime_UTR |
| TATTTATGGTCCCTATTCGC+TGG | 0.424921 | 7_2:+65671130 | None:intergenic |
| TGATGCTTTCAAAGTCTTTG+TGG | 0.429250 | 7_2:-65671348 | Msa1069840:CDS |
| ATTCACCAGATCGTCAGTTC+CGG | 0.433147 | 7_2:-65674308 | Msa1069840:CDS |
| AAGACCTTGATCTACCTTGC+TGG | 0.435876 | 7_2:-65672835 | Msa1069840:CDS |
| AAGTACTATTCTGATATTGC+TGG | 0.438339 | 7_2:-65672880 | Msa1069840:CDS |
| GAGATGCTCTTGTACTTGGC+AGG | 0.444922 | 7_2:+65673027 | None:intergenic |
| CTTGAGTTCTCAAGCATGGT+TGG | 0.445500 | 7_2:-65671086 | Msa1069840:three_prime_UTR |
| TTCCTTTGCAATCTCTGCAA+TGG | 0.446057 | 7_2:+65671206 | None:intergenic |
| TTTGCAAGAGGTCTTGGTGA+TGG | 0.446061 | 7_2:-65672730 | Msa1069840:CDS |
| TCACTCCGTGGAACTGGATC+CGG | 0.455713 | 7_2:-65674257 | Msa1069840:CDS |
| GCAATCTCTGCAATGGGAGC+AGG | 0.456052 | 7_2:+65671213 | None:intergenic |
| AAGAGCATCTCATCAGGGTT+TGG | 0.458213 | 7_2:-65673015 | Msa1069840:CDS |
| GAGTGAAGGCGGCGCGGCGG+CGG | 0.460339 | 7_2:+65674274 | None:intergenic |
| CTCATTCTTTGGTTGTGGGA+TGG | 0.461022 | 7_2:+65671703 | None:intergenic |
| GAAGGCGGCGCGGCGGCGGA+AGG | 0.466553 | 7_2:+65674278 | None:intergenic |
| TGATGAGATGCTCTTGTACT+TGG | 0.466999 | 7_2:+65673023 | None:intergenic |
| ATCTTGCCAAAAGGTTCCTT+AGG | 0.467490 | 7_2:+65674215 | None:intergenic |
| GGATGGGTCCCTACATTACT+TGG | 0.467879 | 7_2:-65672952 | Msa1069840:CDS |
| CACTACACGCCTCTGTCAAA+AGG | 0.475676 | 7_2:-65670921 | Msa1069840:three_prime_UTR |
| CTATTCTGATATTGCTGGCC+CGG | 0.479315 | 7_2:-65672875 | Msa1069840:CDS |
| GGAGCAGCACCACCGGTTGT+TGG | 0.480665 | 7_2:+65671234 | None:intergenic |
| TGTATTTGGCTGCATACTCC+GGG | 0.482403 | 7_2:+65672857 | None:intergenic |
| ATATTTGTTAGGCCAACAAC+CGG | 0.488505 | 7_2:-65671246 | Msa1069840:intron |
| CGGGACCGGAACTGACGATC+TGG | 0.489410 | 7_2:+65674303 | None:intergenic |
| CAAGGGATTAGTGCCTCTAT+GGG | 0.492057 | 7_2:-65672548 | Msa1069840:CDS |
| GGTGCAAAAGCAAAAGAATT+GGG | 0.494159 | 7_2:-65674485 | Msa1069840:five_prime_UTR |
| TTATGATTGCAGGCTGTACA+AGG | 0.497538 | 7_2:-65672566 | Msa1069840:intron |
| CTCAACAATGGTCTCAAAAG+AGG | 0.497947 | 7_2:+65671742 | None:intergenic |
| GATGAACCGTAGAGAAATGA+AGG | 0.500249 | 7_2:+65674350 | None:intergenic |
| ATTCATGATTCCTTCTCCTA+AGG | 0.502454 | 7_2:-65674231 | Msa1069840:CDS |
| ATATATTCCCCACTGGGCTC+CGG | 0.504355 | 7_2:+65671370 | None:intergenic |
| ATTTGTAGAAACAAAGTGAT+TGG | 0.505003 | 7_2:-65674506 | None:intergenic |
| CCAAAGAATGAGTGCAGCAA+AGG | 0.506478 | 7_2:-65671692 | Msa1069840:CDS |
| GTTGCGAAGTTTGGTGTGGT+TGG | 0.508050 | 7_2:-65671443 | Msa1069840:CDS |
| ATTACTTGGTTACAGTGCAC+AGG | 0.515158 | 7_2:-65672938 | Msa1069840:CDS |
| TTGCTGAAAACTTCGTAGCT+AGG | 0.517390 | 7_2:-65670970 | Msa1069840:three_prime_UTR |
| ATGATCCCTTCATTTCTCTA+CGG | 0.518236 | 7_2:-65674356 | Msa1069840:CDS |
| TTGTTGTCTATGCATAAGCA+TGG | 0.519073 | 7_2:-65670884 | Msa1069840:three_prime_UTR |
| AAAGAGACAAGGTTATCAGC+AGG | 0.524035 | 7_2:+65671602 | None:intergenic |
| GGGAGCAGGAGCAGCACCAC+CGG | 0.526192 | 7_2:+65671227 | None:intergenic |
| TACATCTCGATCTTGCCAAA+AGG | 0.527813 | 7_2:+65674206 | None:intergenic |
| CTTAGTCAAGTGTAATATGC+AGG | 0.531917 | 7_2:-65674102 | Msa1069840:intron |
| GCACTGTAACCAAGTAATGT+AGG | 0.533624 | 7_2:+65672943 | None:intergenic |
| CCAAAAGGTTCCTTAGGAGA+AGG | 0.534266 | 7_2:+65674221 | None:intergenic |
| ATGAAGGGATCATGTTTCTA+CGG | 0.534957 | 7_2:+65674366 | None:intergenic |
| AGTAAAATGAAATGCGAGAG+AGG | 0.536732 | 7_2:+65674448 | None:intergenic |
| GGACTTTAACAGCCTCGAAT+GGG | 0.537558 | 7_2:+65672773 | None:intergenic |
| GTACAAGCAGCATAGAAAGC+AGG | 0.538163 | 7_2:+65674179 | None:intergenic |
| AAGCATCATATATTCCCCAC+TGG | 0.538260 | 7_2:+65671363 | None:intergenic |
| AACACTTACCGGAGCCCAGT+GGG | 0.541109 | 7_2:-65671378 | Msa1069840:CDS |
| TATGCTGCTTGTACTGCTGG+TGG | 0.545880 | 7_2:-65674170 | Msa1069840:CDS |
| CAAAGAATGAGTGCAGCAAA+GGG | 0.546393 | 7_2:-65671691 | Msa1069840:CDS |
| CACTGTAACCAAGTAATGTA+GGG | 0.552514 | 7_2:+65672944 | None:intergenic |
| CCAAAATTTGTCAAGTCGGA+AGG | 0.555895 | 7_2:-65672703 | Msa1069840:CDS |
| CCAAGACCTCTTGCAAAACC+GGG | 0.555939 | 7_2:+65672736 | None:intergenic |
| CGGACTTTAACAGCCTCGAA+TGG | 0.556736 | 7_2:+65672772 | None:intergenic |
| TTCATCCACCAAAACCCTAC+CGG | 0.561631 | 7_2:-65674333 | Msa1069840:CDS |
| GTTGCTTGAGTTCTCAAGCA+TGG | 0.562493 | 7_2:-65671090 | Msa1069840:three_prime_UTR |
| TGCTGGTTCAGCATCTGCTG+AGG | 0.562706 | 7_2:-65672818 | Msa1069840:CDS |
| AGAAGGAATCATGAATCTAC+CGG | 0.563282 | 7_2:+65674238 | None:intergenic |
| TGCAGCAAAGGGCTGCAACT+TGG | 0.564769 | 7_2:-65671680 | Msa1069840:CDS |
| GTCCGTGTTCAAACTCAGCC+CGG | 0.566951 | 7_2:-65672754 | Msa1069840:CDS |
| CTTATAGATTTGCTCAACAA+TGG | 0.571646 | 7_2:+65671730 | None:intergenic |
| GTGTTCCAATCATAACAATA+CGG | 0.581864 | 7_2:+65671396 | None:intergenic |
| GATCCAGTTCCACGGAGTGA+AGG | 0.581952 | 7_2:+65674260 | None:intergenic |
| TGAACCAGCAAGGTAGATCA+AGG | 0.583686 | 7_2:+65672831 | None:intergenic |
| TGTTGTCTATGCATAAGCAT+GGG | 0.584430 | 7_2:-65670883 | Msa1069840:three_prime_UTR |
| ATGCTTTCAAAGTCTTTGTG+GGG | 0.587996 | 7_2:-65671346 | Msa1069840:CDS |
| AGCATCATATATTCCCCACT+GGG | 0.588188 | 7_2:+65671364 | None:intergenic |
| CGTTGTTCAGAAAAGAGACA+AGG | 0.592020 | 7_2:+65671591 | None:intergenic |
| GGAATCTGCCTTCCCCATAG+AGG | 0.592926 | 7_2:+65672535 | None:intergenic |
| CGATCTGGTGAATAACCGGT+AGG | 0.594124 | 7_2:+65674318 | None:intergenic |
| AAATGAAATGCGAGAGAGGA+GGG | 0.599025 | 7_2:+65674452 | None:intergenic |
| AATACGGAGAGGGAGACCTC+TGG | 0.599896 | 7_2:+65671412 | None:intergenic |
| GAACGAATTCTCTCTCGCAA+TGG | 0.601158 | 7_2:-65674411 | Msa1069840:exon |
| GTGGTTGGTCTCTTCACCAG+AGG | 0.608443 | 7_2:-65671428 | Msa1069840:CDS |
| GGCTGTTGCGAAGTTTGGTG+TGG | 0.612493 | 7_2:-65671447 | Msa1069840:CDS |
| GATTAGTGCCTCTATGGGGA+AGG | 0.612930 | 7_2:-65672543 | Msa1069840:CDS |
| CCAGTTCCACGGAGTGAAGG+CGG | 0.613356 | 7_2:+65674263 | None:intergenic |
| AACGCCAAAGGAGCAACAGT+TGG | 0.613664 | 7_2:-65671572 | Msa1069840:CDS |
| GCTGGTGGAATTCTTAGCTG+TGG | 0.615544 | 7_2:-65674155 | Msa1069840:CDS |
| ACGGAGTGAAGGCGGCGCGG+CGG | 0.615971 | 7_2:+65674271 | None:intergenic |
| GCTCCCAAAATTTGTCAAGT+CGG | 0.621493 | 7_2:-65672707 | Msa1069840:CDS |
| AGATGCTCTTGTACTTGGCA+GGG | 0.621873 | 7_2:+65673028 | None:intergenic |
| CAATCATAACAATACGGAGA+GGG | 0.625979 | 7_2:+65671402 | None:intergenic |
| AAAATGAAATGCGAGAGAGG+AGG | 0.627390 | 7_2:+65674451 | None:intergenic |
| TCAAGTCGGAAGGAGCTTTG+GGG | 0.630516 | 7_2:-65672693 | Msa1069840:intron |
| TTACACTTGACTAAGTCAAG+AGG | 0.631255 | 7_2:+65674110 | None:intergenic |
| TTACTTGGTTACAGTGCACA+GGG | 0.631543 | 7_2:-65672937 | Msa1069840:CDS |
| TCCCATTGCAGAGATTGCAA+AGG | 0.636460 | 7_2:-65671208 | Msa1069840:CDS |
| CAGCAGATGCTGAACCAGCA+AGG | 0.642348 | 7_2:+65672821 | None:intergenic |
| ATCTACCGGATCCAGTTCCA+CGG | 0.647055 | 7_2:+65674252 | None:intergenic |
| GATCTGGTGAATAACCGGTA+GGG | 0.649771 | 7_2:+65674319 | None:intergenic |
| TATGATTGCAGGCTGTACAA+GGG | 0.654041 | 7_2:-65672565 | Msa1069840:intron |
| TCCACGGAGTGAAGGCGGCG+CGG | 0.654298 | 7_2:+65674268 | None:intergenic |
| TTTGTTAGGCCAACAACCGG+TGG | 0.658305 | 7_2:-65671243 | Msa1069840:intron |
| TGTCTATGCATAAGCATGGG+TGG | 0.661496 | 7_2:-65670880 | Msa1069840:three_prime_UTR |
| AACCGGGCTGAGTTTGAACA+CGG | 0.669826 | 7_2:+65672752 | None:intergenic |
| AGTACAAGAGCATCTCATCA+GGG | 0.671144 | 7_2:-65673020 | Msa1069840:CDS |
| AAATAAACAGAGGAGTGCTG+AGG | 0.681529 | 7_2:-65671112 | Msa1069840:three_prime_UTR |
| GTAATGTAGGGACCCATCCG+CGG | 0.692836 | 7_2:+65672956 | None:intergenic |
| GAACACTTACCGGAGCCCAG+TGG | 0.694776 | 7_2:-65671379 | Msa1069840:CDS |
| ATGAACCGTAGAGAAATGAA+GGG | 0.695016 | 7_2:+65674351 | None:intergenic |
| TAGGGACCATAAATAAACAG+AGG | 0.701316 | 7_2:-65671122 | Msa1069840:three_prime_UTR |
| AAGGGATTAGTGCCTCTATG+GGG | 0.721830 | 7_2:-65672547 | Msa1069840:CDS |
| ACACTTACCGGAGCCCAGTG+GGG | 0.735878 | 7_2:-65671377 | Msa1069840:CDS |
| CCAATCATAACAATACGGAG+AGG | 0.738908 | 7_2:+65671401 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATTTTTTGTTATATTTGTT+AGG | - | chr7_2:65673942-65673961 | Msa1069840:intron | 10.0% |
| !! | AAAATAACAAAAAAGGATTA+TGG | + | chr7_2:65673182-65673201 | None:intergenic | 15.0% |
| !!! | GCATTTGTTATTTTAAATTT+TGG | - | chr7_2:65674178-65674197 | Msa1069840:CDS | 15.0% |
| !!! | TTGTTATTTTAAATTTTGGT+AGG | - | chr7_2:65674182-65674201 | Msa1069840:CDS | 15.0% |
| !! | ACTAATAAAATCGAAATTCT+AGG | + | chr7_2:65671375-65671394 | None:intergenic | 20.0% |
| !! | TGTGATGAAATATTCATATT+TGG | - | chr7_2:65671518-65671537 | Msa1069840:intron | 20.0% |
| !! | TGTTGAAGATTATTCATATT+TGG | - | chr7_2:65671783-65671802 | Msa1069840:intron | 20.0% |
| !! | TTTGTAATAAATAGCATTTG+CGG | + | chr7_2:65671956-65671975 | None:intergenic | 20.0% |
| !! | AATTACTAGTATTGTTAAAC+TGG | - | chr7_2:65672055-65672074 | Msa1069840:intron | 20.0% |
| !! | ACTAAATATATTATGATTGC+AGG | - | chr7_2:65672623-65672642 | Msa1069840:intron | 20.0% |
| !! | GCTGTTAAAATTTATCATTT+AGG | - | chr7_2:65672927-65672946 | Msa1069840:CDS | 20.0% |
| !!! | TTTTAGAAAATTCATTCAAG+AGG | - | chr7_2:65672976-65672995 | Msa1069840:CDS | 20.0% |
| !!! | TGATATATTTGTTCTAAAGT+GGG | - | chr7_2:65673903-65673922 | Msa1069840:intron | 20.0% |
| !! | AATAACAAATGCAAGAAAAT+TGG | + | chr7_2:65674170-65674189 | None:intergenic | 20.0% |
| !!! | TATTTTAAATTTTGGTAGGA+TGG | - | chr7_2:65674186-65674205 | Msa1069840:CDS | 20.0% |
| !!! | GCGATTTATGTTTGATTTTA+AGG | - | chr7_2:65671174-65671193 | Msa1069840:three_prime_UTR | 25.0% |
| ! | TGAATGTTGTTGAATTGTTA+TGG | - | chr7_2:65671249-65671268 | Msa1069840:intron | 25.0% |
| ! | TGATTGTGATACTGTTATAT+TGG | - | chr7_2:65671281-65671300 | Msa1069840:intron | 25.0% |
| ! | AAGAAAACTGCAAAATTCAA+TGG | + | chr7_2:65671428-65671447 | None:intergenic | 25.0% |
| !!! | TTTGATTTTTGTTGATCTAG+TGG | - | chr7_2:65671459-65671478 | Msa1069840:intron | 25.0% |
| !! | TTATATCCTTGACAAACTTT+TGG | + | chr7_2:65673005-65673024 | None:intergenic | 25.0% |
| ! | CTAAAGACATTCAAAAGAAT+GGG | + | chr7_2:65673033-65673052 | None:intergenic | 25.0% |
| ! | TCTAAAGACATTCAAAAGAA+TGG | + | chr7_2:65673034-65673053 | None:intergenic | 25.0% |
| ! | TAGAAGATATATGAGTAAGT+AGG | + | chr7_2:65673217-65673236 | None:intergenic | 25.0% |
| ! | AATAGGAAGATAACTTATGA+TGG | - | chr7_2:65673354-65673373 | Msa1069840:intron | 25.0% |
| !!! | GTTTTACATGTCTTATTATC+AGG | + | chr7_2:65673397-65673416 | None:intergenic | 25.0% |
| !!! | GTGATATATTTGTTCTAAAG+TGG | - | chr7_2:65673902-65673921 | Msa1069840:intron | 25.0% |
| !!! | ATAGTTTGCTTAAGAAACTT+AGG | - | chr7_2:65674043-65674062 | Msa1069840:intron | 25.0% |
| !! | ATGATATAATTTTGCGTGTT+AGG | - | chr7_2:65674253-65674272 | Msa1069840:CDS | 25.0% |
| !! | TGATATAATTTTGCGTGTTA+GGG | - | chr7_2:65674254-65674273 | Msa1069840:CDS | 25.0% |
| !! | TTACCTGATTAATTTTCATC+CGG | - | chr7_2:65674381-65674400 | Msa1069840:CDS | 25.0% |
| !! | TTTTACCAACAAAAACATTC+CGG | + | chr7_2:65674403-65674422 | None:intergenic | 25.0% |
| !! | GGTGTTTATTTGATTTGTGA+TGG | - | chr7_2:65671195-65671214 | Msa1069840:exon | 30.0% |
| ! | TAGATCTGAGAAATGCTTTT+AGG | - | chr7_2:65671220-65671239 | Msa1069840:CDS | 30.0% |
| !! | CTTGTTGTATGTTAAGTTGA+AGG | - | chr7_2:65671331-65671350 | Msa1069840:intron | 30.0% |
| !! | AGTCTGTTGATATTTTGAGT+AGG | - | chr7_2:65671488-65671507 | Msa1069840:intron | 30.0% |
| !!! | ATTTTGTCGTTTTTAACCAC+AGG | + | chr7_2:65671664-65671683 | None:intergenic | 30.0% |
| CAAAATCTCAACAGAGTAAA+GGG | + | chr7_2:65671736-65671755 | None:intergenic | 30.0% | |
| TCAAAATCTCAACAGAGTAA+AGG | + | chr7_2:65671737-65671756 | None:intergenic | 30.0% | |
| ! | AGATTCAGCAATTTAAGACT+AGG | + | chr7_2:65671994-65672013 | None:intergenic | 30.0% |
| TAGGATTGGAATTGTTTAGT+TGG | - | chr7_2:65672093-65672112 | Msa1069840:intron | 30.0% | |
| AAGTACTATTCTGATATTGC+TGG | - | chr7_2:65672319-65672338 | Msa1069840:intron | 30.0% | |
| CTTCAAATGTAGAACTTACA+TGG | + | chr7_2:65672688-65672707 | None:intergenic | 30.0% | |
| CAAAAAAATGATGTGCAAAC+TGG | + | chr7_2:65672803-65672822 | None:intergenic | 30.0% | |
| ACAGCAAAAATATCAACAGA+CGG | + | chr7_2:65672912-65672931 | None:intergenic | 30.0% | |
| TAAAACTCATAAGTAGAAGC+AGG | + | chr7_2:65672961-65672980 | None:intergenic | 30.0% | |
| TGAGAAATGATGAAACTCAT+TGG | - | chr7_2:65673253-65673272 | Msa1069840:intron | 30.0% | |
| CTCATTGGTATGAATATTGA+TGG | - | chr7_2:65673268-65673287 | Msa1069840:intron | 30.0% | |
| TGTCATTATGTGTTACGAAT+AGG | - | chr7_2:65673337-65673356 | Msa1069840:intron | 30.0% | |
| ! | ATAACTTATGATGGAACCTA+AGG | - | chr7_2:65673363-65673382 | Msa1069840:intron | 30.0% |
| ! | TAACTTATGATGGAACCTAA+GGG | - | chr7_2:65673364-65673383 | Msa1069840:intron | 30.0% |
| ! | CTTATAGATTTGCTCAACAA+TGG | + | chr7_2:65673472-65673491 | None:intergenic | 30.0% |
| GTGTTCCAATCATAACAATA+CGG | + | chr7_2:65673806-65673825 | None:intergenic | 30.0% | |
| CTATAAATTGTCGTCATTGT+TGG | + | chr7_2:65674027-65674046 | None:intergenic | 30.0% | |
| AGAAAAATTGATCTCAATCG+AGG | + | chr7_2:65674355-65674374 | None:intergenic | 30.0% | |
| ATTCCGGATGAAAATTAATC+AGG | + | chr7_2:65674387-65674406 | None:intergenic | 30.0% | |
| TGGTGCAAAAGCAAAAGAAT+TGG | - | chr7_2:65670713-65670732 | Msa1069840:three_prime_UTR | 35.0% | |
| GGTGCAAAAGCAAAAGAATT+GGG | - | chr7_2:65670714-65670733 | Msa1069840:three_prime_UTR | 35.0% | |
| AGTAAAATGAAATGCGAGAG+AGG | + | chr7_2:65670754-65670773 | None:intergenic | 35.0% | |
| ! | ATGAAGGGATCATGTTTCTA+CGG | + | chr7_2:65670836-65670855 | None:intergenic | 35.0% |
| ATGATCCCTTCATTTCTCTA+CGG | - | chr7_2:65670843-65670862 | Msa1069840:three_prime_UTR | 35.0% | |
| ATGAACCGTAGAGAAATGAA+GGG | + | chr7_2:65670851-65670870 | None:intergenic | 35.0% | |
| AGAAGGAATCATGAATCTAC+CGG | + | chr7_2:65670964-65670983 | None:intergenic | 35.0% | |
| ATTCATGATTCCTTCTCCTA+AGG | - | chr7_2:65670968-65670987 | Msa1069840:three_prime_UTR | 35.0% | |
| TTACACTTGACTAAGTCAAG+AGG | + | chr7_2:65671092-65671111 | None:intergenic | 35.0% | |
| CTTAGTCAAGTGTAATATGC+AGG | - | chr7_2:65671097-65671116 | Msa1069840:three_prime_UTR | 35.0% | |
| ! | GCTTTTCTTCTTCGTTTTCT+TGG | - | chr7_2:65671124-65671143 | Msa1069840:three_prime_UTR | 35.0% |
| TGTTAAACTGGTTGTGTTGT+TGG | - | chr7_2:65672067-65672086 | Msa1069840:intron | 35.0% | |
| CACTGTAACCAAGTAATGTA+GGG | + | chr7_2:65672258-65672277 | None:intergenic | 35.0% | |
| ! | GTAGATCAAGGTCTTGTATT+TGG | + | chr7_2:65672359-65672378 | None:intergenic | 35.0% |
| !! | CTTCCGACTTGACAAATTTT+GGG | + | chr7_2:65672498-65672517 | None:intergenic | 35.0% |
| CTTGATCTATGCTAGGAATT+AGG | - | chr7_2:65672590-65672609 | Msa1069840:intron | 35.0% | |
| ATCTATGCTAGGAATTAGGA+TGG | - | chr7_2:65672594-65672613 | Msa1069840:intron | 35.0% | |
| TCTATGCTAGGAATTAGGAT+GGG | - | chr7_2:65672595-65672614 | Msa1069840:intron | 35.0% | |
| !! | AATTGACTTGAAGTCCAACA+AGG | + | chr7_2:65672874-65672893 | None:intergenic | 35.0% |
| ! | AACTTATGATGGAACCTAAG+GGG | - | chr7_2:65673365-65673384 | Msa1069840:intron | 35.0% |
| TGTTATCTACTGTTTGATGC+AGG | - | chr7_2:65673731-65673750 | Msa1069840:intron | 35.0% | |
| CAATCATAACAATACGGAGA+GGG | + | chr7_2:65673800-65673819 | None:intergenic | 35.0% | |
| GTTATGATTGGAACACTTAC+CGG | - | chr7_2:65673810-65673829 | Msa1069840:intron | 35.0% | |
| TGATGCTTTCAAAGTCTTTG+TGG | - | chr7_2:65673851-65673870 | Msa1069840:intron | 35.0% | |
| GATGCTTTCAAAGTCTTTGT+GGG | - | chr7_2:65673852-65673871 | Msa1069840:intron | 35.0% | |
| ATGCTTTCAAAGTCTTTGTG+GGG | - | chr7_2:65673853-65673872 | Msa1069840:intron | 35.0% | |
| ! | ATATTTGTTAGGCCAACAAC+CGG | - | chr7_2:65673953-65673972 | Msa1069840:intron | 35.0% |
| TAGGGACCATAAATAAACAG+AGG | - | chr7_2:65674077-65674096 | Msa1069840:intron | 35.0% | |
| AGCACTCCTCTGTTTATTTA+TGG | + | chr7_2:65674086-65674105 | None:intergenic | 35.0% | |
| ! | ATGTGTATTCCTTTTGACAG+AGG | + | chr7_2:65674290-65674309 | None:intergenic | 35.0% |
| TTGTTGTCTATGCATAAGCA+TGG | - | chr7_2:65674315-65674334 | Msa1069840:CDS | 35.0% | |
| TGTTGTCTATGCATAAGCAT+GGG | - | chr7_2:65674316-65674335 | Msa1069840:CDS | 35.0% | |
| !! | TTCATCCGGAATGTTTTTGT+TGG | - | chr7_2:65674395-65674414 | Msa1069840:CDS | 35.0% |
| AAATGAAATGCGAGAGAGGA+GGG | + | chr7_2:65670750-65670769 | None:intergenic | 40.0% | |
| AAAATGAAATGCGAGAGAGG+AGG | + | chr7_2:65670751-65670770 | None:intergenic | 40.0% | |
| GATGAACCGTAGAGAAATGA+AGG | + | chr7_2:65670852-65670871 | None:intergenic | 40.0% | |
| ATCTTGCCAAAAGGTTCCTT+AGG | + | chr7_2:65670987-65671006 | None:intergenic | 40.0% | |
| TACATCTCGATCTTGCCAAA+AGG | + | chr7_2:65670996-65671015 | None:intergenic | 40.0% | |
| ! | CTTCTTCGTTTTCTTGGATC+TGG | - | chr7_2:65671130-65671149 | Msa1069840:three_prime_UTR | 40.0% |
| AAGTTGAAGGATCGCTTGAT+TGG | - | chr7_2:65671344-65671363 | Msa1069840:CDS | 40.0% | |
| TAGTTATGAAACACAGCCAC+CGG | - | chr7_2:65671610-65671629 | Msa1069840:CDS | 40.0% | |
| AGGGCAGCTAGAATAACAAA+AGG | + | chr7_2:65671717-65671736 | None:intergenic | 40.0% | |
| !! | TGTGTTGTTGGTGTTAGGAT+TGG | - | chr7_2:65672079-65672098 | Msa1069840:intron | 40.0% |
| TGATGAGATGCTCTTGTACT+TGG | + | chr7_2:65672179-65672198 | None:intergenic | 40.0% | |
| !! | AAGTACAAGAGCATCTCATC+AGG | - | chr7_2:65672178-65672197 | Msa1069840:intron | 40.0% |
| !! | AGTACAAGAGCATCTCATCA+GGG | - | chr7_2:65672179-65672198 | Msa1069840:intron | 40.0% |
| !!! | AGGGTTTGGAGTTTTGTTCA+AGG | - | chr7_2:65672198-65672217 | Msa1069840:intron | 40.0% |
| GCACTGTAACCAAGTAATGT+AGG | + | chr7_2:65672259-65672278 | None:intergenic | 40.0% | |
| ATTACTTGGTTACAGTGCAC+AGG | - | chr7_2:65672261-65672280 | Msa1069840:intron | 40.0% | |
| TTACTTGGTTACAGTGCACA+GGG | - | chr7_2:65672262-65672281 | Msa1069840:intron | 40.0% | |
| TTGTATTTGGCTGCATACTC+CGG | + | chr7_2:65672346-65672365 | None:intergenic | 40.0% | |
| GCTCCCAAAATTTGTCAAGT+CGG | - | chr7_2:65672492-65672511 | Msa1069840:intron | 40.0% | |
| !! | CCTTCCGACTTGACAAATTT+TGG | + | chr7_2:65672499-65672518 | None:intergenic | 40.0% |
| CCAAAATTTGTCAAGTCGGA+AGG | - | chr7_2:65672496-65672515 | Msa1069840:intron | 40.0% | |
| TGTTGCTCTTGATCTATGCT+AGG | - | chr7_2:65672583-65672602 | Msa1069840:intron | 40.0% | |
| TTATGATTGCAGGCTGTACA+AGG | - | chr7_2:65672633-65672652 | Msa1069840:intron | 40.0% | |
| TATGATTGCAGGCTGTACAA+GGG | - | chr7_2:65672634-65672653 | Msa1069840:intron | 40.0% | |
| ACTGCAATATCCTTGTTGAC+TGG | - | chr7_2:65672725-65672744 | Msa1069840:CDS | 40.0% | |
| ! | TTCAAAGTGTCCAGTCAACA+AGG | + | chr7_2:65672738-65672757 | None:intergenic | 40.0% |
| TCCAACAAGGTAGTGTAACA+TGG | + | chr7_2:65672861-65672880 | None:intergenic | 40.0% | |
| AGGAAGCCAAAAGTTTGTCA+AGG | - | chr7_2:65672996-65673015 | Msa1069840:CDS | 40.0% | |
| TTATCAGGTTTCAACCCCTT+AGG | + | chr7_2:65673382-65673401 | None:intergenic | 40.0% | |
| CTCAACAATGGTCTCAAAAG+AGG | + | chr7_2:65673460-65673479 | None:intergenic | 40.0% | |
| TGCACTCATTCTTTGGTTGT+GGG | + | chr7_2:65673503-65673522 | None:intergenic | 40.0% | |
| CAAAGAATGAGTGCAGCAAA+GGG | - | chr7_2:65673508-65673527 | Msa1069840:intron | 40.0% | |
| AAAGAGACAAGGTTATCAGC+AGG | + | chr7_2:65673600-65673619 | None:intergenic | 40.0% | |
| CGTTGTTCAGAAAAGAGACA+AGG | + | chr7_2:65673611-65673630 | None:intergenic | 40.0% | |
| ! | TCTTTTCTGAACAACGCCAA+AGG | - | chr7_2:65673615-65673634 | Msa1069840:intron | 40.0% |
| CCAATCATAACAATACGGAG+AGG | + | chr7_2:65673801-65673820 | None:intergenic | 40.0% | |
| CCTCTCCGTATTGTTATGAT+TGG | - | chr7_2:65673798-65673817 | Msa1069840:intron | 40.0% | |
| AGCATCATATATTCCCCACT+GGG | + | chr7_2:65673838-65673857 | None:intergenic | 40.0% | |
| AAGCATCATATATTCCCCAC+TGG | + | chr7_2:65673839-65673858 | None:intergenic | 40.0% | |
| TCCTTTGCAATCTCTGCAAT+GGG | + | chr7_2:65673995-65674014 | None:intergenic | 40.0% | |
| TTCCTTTGCAATCTCTGCAA+TGG | + | chr7_2:65673996-65674015 | None:intergenic | 40.0% | |
| AACTTAGGAAACCAGCGAAT+AGG | - | chr7_2:65674058-65674077 | Msa1069840:intron | 40.0% | |
| ACTTAGGAAACCAGCGAATA+GGG | - | chr7_2:65674059-65674078 | Msa1069840:intron | 40.0% | |
| TATTTATGGTCCCTATTCGC+TGG | + | chr7_2:65674072-65674091 | None:intergenic | 40.0% | |
| !! | AAATAAACAGAGGAGTGCTG+AGG | - | chr7_2:65674087-65674106 | Msa1069840:intron | 40.0% |
| TTGCTGAAAACTTCGTAGCT+AGG | - | chr7_2:65674229-65674248 | Msa1069840:CDS | 40.0% | |
| GAACGAATTCTCTCTCGCAA+TGG | - | chr7_2:65670788-65670807 | Msa1069840:three_prime_UTR | 45.0% | |
| TTCATCCACCAAAACCCTAC+CGG | - | chr7_2:65670866-65670885 | Msa1069840:three_prime_UTR | 45.0% | |
| !! | AATAACCGGTAGGGTTTTGG+TGG | + | chr7_2:65670874-65670893 | None:intergenic | 45.0% |
| ! | GTGAATAACCGGTAGGGTTT+TGG | + | chr7_2:65670877-65670896 | None:intergenic | 45.0% |
| GATCTGGTGAATAACCGGTA+GGG | + | chr7_2:65670883-65670902 | None:intergenic | 45.0% | |
| CTGACGATCTGGTGAATAAC+CGG | + | chr7_2:65670888-65670907 | None:intergenic | 45.0% | |
| ATTCACCAGATCGTCAGTTC+CGG | - | chr7_2:65670891-65670910 | Msa1069840:three_prime_UTR | 45.0% | |
| CCAAAAGGTTCCTTAGGAGA+AGG | + | chr7_2:65670981-65671000 | None:intergenic | 45.0% | |
| ! | CCTTCTCCTAAGGAACCTTT+TGG | - | chr7_2:65670978-65670997 | Msa1069840:three_prime_UTR | 45.0% |
| GTACAAGCAGCATAGAAAGC+AGG | + | chr7_2:65671023-65671042 | None:intergenic | 45.0% | |
| ! | TTCTATGCTGCTTGTACTGC+TGG | - | chr7_2:65671026-65671045 | Msa1069840:three_prime_UTR | 45.0% |
| CATTGACACATCAACACCTG+TGG | - | chr7_2:65671645-65671664 | Msa1069840:CDS | 45.0% | |
| ! | CTGGTTGTGTTGTTGGTGTT+AGG | - | chr7_2:65672074-65672093 | Msa1069840:intron | 45.0% |
| AGATGCTCTTGTACTTGGCA+GGG | + | chr7_2:65672174-65672193 | None:intergenic | 45.0% | |
| !! | AAGAGCATCTCATCAGGGTT+TGG | - | chr7_2:65672184-65672203 | Msa1069840:intron | 45.0% |
| !!! | TGGAGTTTTGTTCAAGGAGC+AGG | - | chr7_2:65672204-65672223 | Msa1069840:intron | 45.0% |
| !!! | GGAGTTTTGTTCAAGGAGCA+GGG | - | chr7_2:65672205-65672224 | Msa1069840:intron | 45.0% |
| TTCAAGGAGCAGGGAGTTAA+GGG | - | chr7_2:65672214-65672233 | Msa1069840:intron | 45.0% | |
| ! | CACAGGGTGCTTGCAAATTT+GGG | - | chr7_2:65672278-65672297 | Msa1069840:intron | 45.0% |
| CTATTCTGATATTGCTGGCC+CGG | - | chr7_2:65672324-65672343 | Msa1069840:intron | 45.0% | |
| TGTATTTGGCTGCATACTCC+GGG | + | chr7_2:65672345-65672364 | None:intergenic | 45.0% | |
| AAGACCTTGATCTACCTTGC+TGG | - | chr7_2:65672364-65672383 | Msa1069840:intron | 45.0% | |
| TGAACCAGCAAGGTAGATCA+AGG | + | chr7_2:65672371-65672390 | None:intergenic | 45.0% | |
| GGACTTTAACAGCCTCGAAT+GGG | + | chr7_2:65672429-65672448 | None:intergenic | 45.0% | |
| ACCAAGACCTCTTGCAAAAC+CGG | + | chr7_2:65672467-65672486 | None:intergenic | 45.0% | |
| TTTGCAAGAGGTCTTGGTGA+TGG | - | chr7_2:65672469-65672488 | Msa1069840:intron | 45.0% | |
| ! | TTGCAAGAGGTCTTGGTGAT+GGG | - | chr7_2:65672470-65672489 | Msa1069840:intron | 45.0% |
| ! | ACAAGGGATTAGTGCCTCTA+TGG | - | chr7_2:65672650-65672669 | Msa1069840:intron | 45.0% |
| ! | CAAGGGATTAGTGCCTCTAT+GGG | - | chr7_2:65672651-65672670 | Msa1069840:intron | 45.0% |
| ! | AAGGGATTAGTGCCTCTATG+GGG | - | chr7_2:65672652-65672671 | Msa1069840:intron | 45.0% |
| GTTACTTCCGTTACCATCTG+AGG | - | chr7_2:65672773-65672792 | Msa1069840:CDS | 45.0% | |
| TGGAATGCCTCAGATGGTAA+CGG | + | chr7_2:65672783-65672802 | None:intergenic | 45.0% | |
| GCCATGTTACACTACCTTGT+TGG | - | chr7_2:65672857-65672876 | Msa1069840:CDS | 45.0% | |
| CTCATTCTTTGGTTGTGGGA+TGG | + | chr7_2:65673499-65673518 | None:intergenic | 45.0% | |
| CTGCACTCATTCTTTGGTTG+TGG | + | chr7_2:65673504-65673523 | None:intergenic | 45.0% | |
| CCTTTGCTGCACTCATTCTT+TGG | + | chr7_2:65673510-65673529 | None:intergenic | 45.0% | |
| CCAAAGAATGAGTGCAGCAA+AGG | - | chr7_2:65673507-65673526 | Msa1069840:intron | 45.0% | |
| !!! | CAACTTGGTGTCAGTTTTGC+TGG | - | chr7_2:65673534-65673553 | Msa1069840:intron | 45.0% |
| ! | TTTGCTGGTGGATACATTGC+TGG | - | chr7_2:65673549-65673568 | Msa1069840:intron | 45.0% |
| ATCACCAACTGTTGCTCCTT+TGG | + | chr7_2:65673634-65673653 | None:intergenic | 45.0% | |
| TCCCATTGCAGAGATTGCAA+AGG | - | chr7_2:65673991-65674010 | Msa1069840:intron | 45.0% | |
| GTTGCTTGAGTTCTCAAGCA+TGG | - | chr7_2:65674109-65674128 | Msa1069840:CDS | 45.0% | |
| CTTGAGTTCTCAAGCATGGT+TGG | - | chr7_2:65674113-65674132 | Msa1069840:CDS | 45.0% | |
| ! | GCTACGAAGTTTTCAGCAAC+CGG | + | chr7_2:65674228-65674247 | None:intergenic | 45.0% |
| TGTCTATGCATAAGCATGGG+TGG | - | chr7_2:65674319-65674338 | Msa1069840:CDS | 45.0% | |
| !! | AAAAAAAAAAATAACAAAAA+AGG | + | chr7_2:65673189-65673208 | None:intergenic | 5.0% |
| !! | AATATAACAAAAAATTTATT+AGG | + | chr7_2:65673938-65673957 | None:intergenic | 5.0% |
| CGATCTGGTGAATAACCGGT+AGG | + | chr7_2:65670884-65670903 | None:intergenic | 50.0% | |
| ATCTACCGGATCCAGTTCCA+CGG | + | chr7_2:65670950-65670969 | None:intergenic | 50.0% | |
| ! | TATGCTGCTTGTACTGCTGG+TGG | - | chr7_2:65671029-65671048 | Msa1069840:three_prime_UTR | 50.0% |
| GCTGGTGGAATTCTTAGCTG+TGG | - | chr7_2:65671044-65671063 | Msa1069840:three_prime_UTR | 50.0% | |
| GAGATGCTCTTGTACTTGGC+AGG | + | chr7_2:65672175-65672194 | None:intergenic | 50.0% | |
| GTTCAAGGAGCAGGGAGTTA+AGG | - | chr7_2:65672213-65672232 | Msa1069840:intron | 50.0% | |
| !! | GGAGTTAAGGGCTTTTTCCG+CGG | - | chr7_2:65672226-65672245 | Msa1069840:intron | 50.0% |
| !! | TTAAGGGCTTTTTCCGCGGA+TGG | - | chr7_2:65672230-65672249 | Msa1069840:intron | 50.0% |
| !! | TAAGGGCTTTTTCCGCGGAT+GGG | - | chr7_2:65672231-65672250 | Msa1069840:intron | 50.0% |
| GGATGGGTCCCTACATTACT+TGG | - | chr7_2:65672247-65672266 | Msa1069840:intron | 50.0% | |
| ! | GCACAGGGTGCTTGCAAATT+TGG | - | chr7_2:65672277-65672296 | Msa1069840:intron | 50.0% |
| CGGACTTTAACAGCCTCGAA+TGG | + | chr7_2:65672430-65672449 | None:intergenic | 50.0% | |
| AACCGGGCTGAGTTTGAACA+CGG | + | chr7_2:65672450-65672469 | None:intergenic | 50.0% | |
| CCAAGACCTCTTGCAAAACC+GGG | + | chr7_2:65672466-65672485 | None:intergenic | 50.0% | |
| TGTCAAGTCGGAAGGAGCTT+TGG | - | chr7_2:65672504-65672523 | Msa1069840:intron | 50.0% | |
| GTCAAGTCGGAAGGAGCTTT+GGG | - | chr7_2:65672505-65672524 | Msa1069840:intron | 50.0% | |
| TCAAGTCGGAAGGAGCTTTG+GGG | - | chr7_2:65672506-65672525 | Msa1069840:intron | 50.0% | |
| GATTAGTGCCTCTATGGGGA+AGG | - | chr7_2:65672656-65672675 | Msa1069840:intron | 50.0% | |
| GCAAACTGGAATGCCTCAGA+TGG | + | chr7_2:65672789-65672808 | None:intergenic | 50.0% | |
| !!! | CTTGGTGTCAGTTTTGCTGG+TGG | - | chr7_2:65673537-65673556 | Msa1069840:intron | 50.0% |
| AACGCCAAAGGAGCAACAGT+TGG | - | chr7_2:65673627-65673646 | Msa1069840:intron | 50.0% | |
| ATGCAGGCTGTTGCGAAGTT+TGG | - | chr7_2:65673747-65673766 | Msa1069840:intron | 50.0% | |
| !! | GTTGCGAAGTTTGGTGTGGT+TGG | - | chr7_2:65673756-65673775 | Msa1069840:intron | 50.0% |
| ATATATTCCCCACTGGGCTC+CGG | + | chr7_2:65673832-65673851 | None:intergenic | 50.0% | |
| TTTGTTAGGCCAACAACCGG+TGG | - | chr7_2:65673956-65673975 | Msa1069840:intron | 50.0% | |
| !! | TGGTTTTGCTCGCATCCTTC+CGG | - | chr7_2:65674206-65674225 | Msa1069840:CDS | 50.0% |
| ! | CGAAGTTTTCAGCAACCGGA+AGG | + | chr7_2:65674224-65674243 | None:intergenic | 50.0% |
| CACTACACGCCTCTGTCAAA+AGG | - | chr7_2:65674278-65674297 | Msa1069840:CDS | 50.0% | |
| GATCCAGTTCCACGGAGTGA+AGG | + | chr7_2:65670942-65670961 | None:intergenic | 55.0% | |
| TCACTCCGTGGAACTGGATC+CGG | - | chr7_2:65670942-65670961 | Msa1069840:three_prime_UTR | 55.0% | |
| GTCAATGACCGTGTCGTGAC+CGG | + | chr7_2:65671632-65671651 | None:intergenic | 55.0% | |
| GTAATGTAGGGACCCATCCG+CGG | + | chr7_2:65672246-65672265 | None:intergenic | 55.0% | |
| CAGCAGATGCTGAACCAGCA+AGG | + | chr7_2:65672381-65672400 | None:intergenic | 55.0% | |
| !! | TGCTGGTTCAGCATCTGCTG+AGG | - | chr7_2:65672381-65672400 | Msa1069840:intron | 55.0% |
| CGTTGCACTTTGCCCATTCG+AGG | - | chr7_2:65672414-65672433 | Msa1069840:intron | 55.0% | |
| GTCCGTGTTCAAACTCAGCC+CGG | - | chr7_2:65672445-65672464 | Msa1069840:intron | 55.0% | |
| ! | ACTCAGCCCGGTTTTGCAAG+AGG | - | chr7_2:65672457-65672476 | Msa1069840:intron | 55.0% |
| ! | CCCGGTTTTGCAAGAGGTCT+TGG | - | chr7_2:65672463-65672482 | Msa1069840:intron | 55.0% |
| GGAATCTGCCTTCCCCATAG+AGG | + | chr7_2:65672667-65672686 | None:intergenic | 55.0% | |
| TGCAGCAAAGGGCTGCAACT+TGG | - | chr7_2:65673519-65673538 | Msa1069840:intron | 55.0% | |
| ! | GGCTGTTGCGAAGTTTGGTG+TGG | - | chr7_2:65673752-65673771 | Msa1069840:intron | 55.0% |
| !! | GTGGTTGGTCTCTTCACCAG+AGG | - | chr7_2:65673771-65673790 | Msa1069840:intron | 55.0% |
| AATACGGAGAGGGAGACCTC+TGG | + | chr7_2:65673790-65673809 | None:intergenic | 55.0% | |
| AACACTTACCGGAGCCCAGT+GGG | - | chr7_2:65673821-65673840 | Msa1069840:intron | 55.0% | |
| GCAATCTCTGCAATGGGAGC+AGG | + | chr7_2:65673989-65674008 | None:intergenic | 55.0% | |
| CCAGTTCCACGGAGTGAAGG+CGG | + | chr7_2:65670939-65670958 | None:intergenic | 60.0% | |
| AATGACCGTGTCGTGACCGG+TGG | + | chr7_2:65671629-65671648 | None:intergenic | 60.0% | |
| GAACACTTACCGGAGCCCAG+TGG | - | chr7_2:65673820-65673839 | Msa1069840:intron | 60.0% | |
| ACACTTACCGGAGCCCAGTG+GGG | - | chr7_2:65673822-65673841 | Msa1069840:intron | 60.0% | |
| CGGGACCGGAACTGACGATC+TGG | + | chr7_2:65670899-65670918 | None:intergenic | 65.0% | |
| CCGCCTTCACTCCGTGGAAC+TGG | - | chr7_2:65670936-65670955 | Msa1069840:three_prime_UTR | 65.0% | |
| CACAGCCACCGGTCACGACA+CGG | - | chr7_2:65671621-65671640 | Msa1069840:CDS | 65.0% | |
| ! | GGAGCAGCACCACCGGTTGT+TGG | + | chr7_2:65673968-65673987 | None:intergenic | 65.0% |
| TCCACGGAGTGAAGGCGGCG+CGG | + | chr7_2:65670934-65670953 | None:intergenic | 70.0% | |
| GGGAGCAGGAGCAGCACCAC+CGG | + | chr7_2:65673975-65673994 | None:intergenic | 70.0% | |
| ACGGAGTGAAGGCGGCGCGG+CGG | + | chr7_2:65670931-65670950 | None:intergenic | 75.0% | |
| ! | GGCGGCGGAAGGAGCGGGAC+CGG | + | chr7_2:65670913-65670932 | None:intergenic | 80.0% |
| ! | GAGTGAAGGCGGCGCGGCGG+CGG | + | chr7_2:65670928-65670947 | None:intergenic | 80.0% |
| ! | GCCGCGCCGCCTTCACTCCG+TGG | - | chr7_2:65670930-65670949 | Msa1069840:three_prime_UTR | 80.0% |
| ! | GGCGCGGCGGCGGAAGGAGC+GGG | + | chr7_2:65670918-65670937 | None:intergenic | 85.0% |
| ! | CGGCGCGGCGGCGGAAGGAG+CGG | + | chr7_2:65670919-65670938 | None:intergenic | 85.0% |
| ! | GAAGGCGGCGCGGCGGCGGA+AGG | + | chr7_2:65670924-65670943 | None:intergenic | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 65670705 | 65674516 | 65670705 | ID=Msa1069840;Name=Msa1069840 |
| chr7_2 | mRNA | 65670705 | 65674516 | 65670705 | ID=Msa1069840-mRNA-1;Parent=Msa1069840;Name=Msa1069840-mRNA-1;_AED=0.08;_eAED=0.08;_QI=102|1|1|1|1|1|6|498|370 |
| chr7_2 | exon | 65670705 | 65671257 | 65670705 | ID=Msa1069840-mRNA-1:exon:13846;Parent=Msa1069840-mRNA-1 |
| chr7_2 | exon | 65671344 | 65671468 | 65671344 | ID=Msa1069840-mRNA-1:exon:13845;Parent=Msa1069840-mRNA-1 |
| chr7_2 | exon | 65671568 | 65671782 | 65671568 | ID=Msa1069840-mRNA-1:exon:13844;Parent=Msa1069840-mRNA-1 |
| chr7_2 | exon | 65672533 | 65672576 | 65672533 | ID=Msa1069840-mRNA-1:exon:13843;Parent=Msa1069840-mRNA-1 |
| chr7_2 | exon | 65672694 | 65673055 | 65672694 | ID=Msa1069840-mRNA-1:exon:13842;Parent=Msa1069840-mRNA-1 |
| chr7_2 | exon | 65674103 | 65674516 | 65674103 | ID=Msa1069840-mRNA-1:exon:13841;Parent=Msa1069840-mRNA-1 |
| chr7_2 | five_prime_UTR | 65674415 | 65674516 | 65674415 | ID=Msa1069840-mRNA-1:five_prime_utr;Parent=Msa1069840-mRNA-1 |
| chr7_2 | CDS | 65674103 | 65674414 | 65674103 | ID=Msa1069840-mRNA-1:cds;Parent=Msa1069840-mRNA-1 |
| chr7_2 | CDS | 65672694 | 65673055 | 65672694 | ID=Msa1069840-mRNA-1:cds;Parent=Msa1069840-mRNA-1 |
| chr7_2 | CDS | 65672533 | 65672576 | 65672533 | ID=Msa1069840-mRNA-1:cds;Parent=Msa1069840-mRNA-1 |
| chr7_2 | CDS | 65671568 | 65671782 | 65671568 | ID=Msa1069840-mRNA-1:cds;Parent=Msa1069840-mRNA-1 |
| chr7_2 | CDS | 65671344 | 65671468 | 65671344 | ID=Msa1069840-mRNA-1:cds;Parent=Msa1069840-mRNA-1 |
| chr7_2 | CDS | 65671203 | 65671257 | 65671203 | ID=Msa1069840-mRNA-1:cds;Parent=Msa1069840-mRNA-1 |
| chr7_2 | three_prime_UTR | 65670705 | 65671202 | 65670705 | ID=Msa1069840-mRNA-1:three_prime_utr;Parent=Msa1069840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
