Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1286780 | A0A072TRW5 | 86.076 | 395 | 39 | 4 | 1 | 383 | 1 | 391 | 0.0 | 637 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1286780 | Msa1287210 | 0.822013 | 2.972404e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1286780 | MtrunA17_Chr8g0360801 | 86.076 | 395 | 39 | 4 | 1 | 383 | 1 | 391 | 0.0 | 637 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 107 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAATGTTAGGTGATAAATTT+TGG | 0.145929 | 8_3:-35525211 | Msa1286780:three_prime_UTR |
AGTTGGCCAGTTTCAAAATA+AGG | 0.226257 | 8_3:-35525339 | Msa1286780:three_prime_UTR |
TGTTGGAAGTTCAAGTTCTA+TGG | 0.256545 | 8_3:-35527428 | Msa1286780:CDS |
AACACTACAACTACAAGAAT+TGG | 0.271431 | 8_3:-35527663 | Msa1286780:CDS |
AGGGGTCGTAAATCGTCTTC+TGG | 0.277018 | 8_3:-35527085 | Msa1286780:CDS |
GATGCAAAAGAAGGATTATA+AGG | 0.286391 | 8_3:-35527353 | Msa1286780:CDS |
TGTACTAACTCTTGTATATA+GGG | 0.293798 | 8_3:-35525266 | Msa1286780:three_prime_UTR |
TTGAAACAAGGTTCTAGTTT+TGG | 0.295002 | 8_3:-35527577 | Msa1286780:CDS |
GTGTACTAACTCTTGTATAT+AGG | 0.299171 | 8_3:-35525267 | Msa1286780:three_prime_UTR |
AAACTGGCCAACTTCTTTCC+TGG | 0.305393 | 8_3:+35525349 | None:intergenic |
AAACTCTACCATCGGTAAAA+AGG | 0.306602 | 8_3:-35526480 | Msa1286780:CDS |
GACTCATTGAAGCTTTATAT+TGG | 0.320301 | 8_3:-35525293 | Msa1286780:three_prime_UTR |
AAAGGAAAAGGAATAATAAT+AGG | 0.322246 | 8_3:-35526923 | Msa1286780:CDS |
TGTTGGTAACATGAAGTTTA+GGG | 0.341584 | 8_3:-35527104 | Msa1286780:CDS |
ATGTTGGTAACATGAAGTTT+AGG | 0.350395 | 8_3:-35527105 | Msa1286780:CDS |
TTTATTCACTGTCAATTTCC+TGG | 0.361000 | 8_3:+35526428 | None:intergenic |
AAGTTCAAGTACAATGTTAC+AGG | 0.361419 | 8_3:-35526519 | Msa1286780:CDS |
TATAGGGTGAGTGGGTAGTA+TGG | 0.366049 | 8_3:-35525250 | Msa1286780:three_prime_UTR |
GAAGGATTTACTTGCGGTAA+TGG | 0.379250 | 8_3:-35525410 | Msa1286780:three_prime_UTR |
AATTTATCACCTAACATTGC+AGG | 0.381514 | 8_3:+35525215 | None:intergenic |
CAGTGAGTAGTACCAGTCTT+AGG | 0.383306 | 8_3:-35527168 | Msa1286780:CDS |
TCAGGACCAGCATAAATATA+TGG | 0.383753 | 8_3:-35527233 | Msa1286780:CDS |
ATGCAAAAGAAGGATTATAA+GGG | 0.390439 | 8_3:-35527352 | Msa1286780:CDS |
ACACTACAACTACAAGAATT+GGG | 0.394132 | 8_3:-35527662 | Msa1286780:CDS |
TGACCCCAGCCTGCAATGTT+AGG | 0.394505 | 8_3:-35525224 | Msa1286780:three_prime_UTR |
TCAATGAGTCGTGTGATATC+AGG | 0.402861 | 8_3:+35525306 | None:intergenic |
ATCACCTAACATTGCAGGCT+GGG | 0.405445 | 8_3:+35525220 | None:intergenic |
CGGCATCTTCATCGATCATT+GGG | 0.408596 | 8_3:-35528557 | Msa1286780:CDS |
GTTGGCCAGTTTCAAAATAA+GGG | 0.409153 | 8_3:-35525338 | Msa1286780:three_prime_UTR |
ATCAGCAGCTTTGACAATAC+TGG | 0.420962 | 8_3:-35526313 | Msa1286780:intron |
AGCTGTAATGGAAGATGTCT+TGG | 0.424271 | 8_3:+35526952 | None:intergenic |
ACGGCATCTTCATCGATCAT+TGG | 0.427822 | 8_3:-35528558 | Msa1286780:CDS |
AAGGCTAGTTGCAATCTTGT+TGG | 0.439609 | 8_3:-35527445 | Msa1286780:CDS |
TCAGTTAGAAGCGTTAGTTT+TGG | 0.442082 | 8_3:-35527289 | Msa1286780:CDS |
GGGGTCGTAAATCGTCTTCT+GGG | 0.444556 | 8_3:-35527084 | Msa1286780:CDS |
ATCCTTCTAGCTGGATTACC+TGG | 0.444687 | 8_3:+35525426 | None:intergenic |
AACCAGGTAATCCAGCTAGA+AGG | 0.446703 | 8_3:-35525428 | Msa1286780:three_prime_UTR |
CATCAATGTTGCAAAGTCAT+TGG | 0.449370 | 8_3:-35526891 | Msa1286780:intron |
CGCAAGTAAATCCTTCTAGC+TGG | 0.462244 | 8_3:+35525417 | None:intergenic |
TCCATTACAGCTGAAGGAAA+AGG | 0.468562 | 8_3:-35526941 | Msa1286780:CDS |
CGAAAATCACAGATAAGAAC+AGG | 0.470754 | 8_3:-35526994 | Msa1286780:CDS |
GATAAGAACAGGTGCAATCC+TGG | 0.472976 | 8_3:-35526983 | Msa1286780:CDS |
CTTGATTTCGAGACTGAAGA+AGG | 0.477777 | 8_3:+35527691 | None:intergenic |
GATGTCTTGGATTTATTACC+AGG | 0.480862 | 8_3:+35526965 | None:intergenic |
AGAACATAATCGTCAACATA+AGG | 0.482359 | 8_3:-35526349 | Msa1286780:three_prime_UTR |
CATTCTCTTTCCCTTGTCAA+AGG | 0.484404 | 8_3:+35526454 | None:intergenic |
ACAAACTTAGCTTCATAACT+AGG | 0.487569 | 8_3:+35527034 | None:intergenic |
CTCGTTGAGTTGGAGAATCA+TGG | 0.489131 | 8_3:-35528596 | Msa1286780:exon |
TCAAATGTTAGCAGGACAAA+AGG | 0.493414 | 8_3:-35527529 | Msa1286780:CDS |
AGTAGAAGCCTCAAGAGTTC+AGG | 0.496950 | 8_3:-35527251 | Msa1286780:CDS |
TCACTCTGGTGAGGAGGCAG+TGG | 0.497952 | 8_3:-35527728 | Msa1286780:CDS |
TTGATTGTTGAAGCTAACTC+TGG | 0.505940 | 8_3:-35528035 | Msa1286780:CDS |
TATCACCTAACATTGCAGGC+TGG | 0.507265 | 8_3:+35525219 | None:intergenic |
TCTTCTGGGAAGTCTAGTGT+TGG | 0.508703 | 8_3:-35527070 | Msa1286780:CDS |
ACAGCTGAAGGAAAAGGAAA+AGG | 0.511415 | 8_3:-35526935 | Msa1286780:CDS |
ATGCTGGTCCTGAACTCTTG+AGG | 0.511672 | 8_3:+35527243 | None:intergenic |
TGAGGAGGCAGTGGCGTCGC+CGG | 0.512983 | 8_3:-35527719 | Msa1286780:CDS |
AAAAGTCTCAAAAGTGGAGA+TGG | 0.515736 | 8_3:-35527128 | Msa1286780:CDS |
AATCAACGTCAAATGTTAGC+AGG | 0.515842 | 8_3:-35527537 | Msa1286780:CDS |
TGATGATGAAAAGCCACAAA+AGG | 0.516913 | 8_3:+35525142 | None:intergenic |
AAGTCAAAATTTGCTCACTC+TGG | 0.517195 | 8_3:-35527742 | Msa1286780:CDS |
TTTCACAGTCCTCGTTGAGT+TGG | 0.519188 | 8_3:-35528606 | Msa1286780:five_prime_UTR |
AACAATTTGAAGCACCTATG+TGG | 0.521866 | 8_3:-35528064 | Msa1286780:CDS |
GGATTATAAGGGGCATAAGA+AGG | 0.525077 | 8_3:-35527341 | Msa1286780:CDS |
ATGAAGAAGGTGTTCTTGCA+AGG | 0.525891 | 8_3:-35526398 | Msa1286780:three_prime_UTR |
ACTCGCGAGCAGACAACTGA+TGG | 0.536082 | 8_3:+35527767 | None:intergenic |
TCACCTAACATTGCAGGCTG+GGG | 0.537633 | 8_3:+35525221 | None:intergenic |
AACACCAAAAGTCTCAAAAG+TGG | 0.540910 | 8_3:-35527134 | Msa1286780:CDS |
CTCTTGTATATAGGGTGAGT+GGG | 0.541586 | 8_3:-35525258 | Msa1286780:three_prime_UTR |
ACATCTTCCATTACAGCTGA+AGG | 0.548952 | 8_3:-35526947 | Msa1286780:CDS |
GGAAAAGGAATAATAATAGG+AGG | 0.550465 | 8_3:-35526920 | Msa1286780:CDS |
CTTCTGGGAAGTCTAGTGTT+GGG | 0.550470 | 8_3:-35527069 | Msa1286780:CDS |
AACAATCGTGTGCGAAACGA+CGG | 0.550605 | 8_3:+35528662 | None:intergenic |
TGAGAGTATGATGCAAAAGA+AGG | 0.550843 | 8_3:-35527362 | Msa1286780:CDS |
CAATGTGAGGCAAAGAAACC+AGG | 0.556991 | 8_3:-35525444 | Msa1286780:three_prime_UTR |
ACACCTCCATATATTTATGC+TGG | 0.557766 | 8_3:+35527227 | None:intergenic |
TCAAAAGTGGAGATGGATGT+TGG | 0.563203 | 8_3:-35527121 | Msa1286780:CDS |
CACTACAACTACAAGAATTG+GGG | 0.565346 | 8_3:-35527661 | Msa1286780:CDS |
TCTTCAGTCTCGAAATCAAG+AGG | 0.567981 | 8_3:-35527688 | Msa1286780:CDS |
ACTCTTGTATATAGGGTGAG+TGG | 0.571473 | 8_3:-35525259 | Msa1286780:three_prime_UTR |
CTTCTCAGAACTCGAATCGA+TGG | 0.578175 | 8_3:+35528632 | None:intergenic |
CAACATAAGGATGACAAAGC+AGG | 0.583166 | 8_3:-35526336 | Msa1286780:three_prime_UTR |
GTTTGTTTCAAAGCAGCAGA+GGG | 0.585395 | 8_3:-35527017 | Msa1286780:CDS |
ATTTGCTCACTCTGGTGAGG+AGG | 0.588243 | 8_3:-35527734 | Msa1286780:CDS |
TAAACAGCAGGGTTTAAGCA+AGG | 0.588477 | 8_3:-35527608 | Msa1286780:CDS |
GAGACTGAAGAAGGAAGTGC+CGG | 0.589263 | 8_3:+35527700 | None:intergenic |
TGAAGAAGGTGTTCTTGCAA+GGG | 0.589743 | 8_3:-35526397 | Msa1286780:three_prime_UTR |
ACAATTTGAAGCACCTATGT+GGG | 0.592746 | 8_3:-35528063 | Msa1286780:CDS |
ACAATCAAATCTGCCCACAT+AGG | 0.600457 | 8_3:+35528050 | None:intergenic |
GTTGCAGAACTGATGATGAC+TGG | 0.605883 | 8_3:-35527910 | Msa1286780:intron |
ATGGAAGCTTCTAAGAAGAA+CGG | 0.610680 | 8_3:-35528577 | Msa1286780:CDS |
TGAAAGGTCTACAAGAAGCA+TGG | 0.613540 | 8_3:-35527392 | Msa1286780:CDS |
CAGCTAGAAGGATTTACTTG+CGG | 0.614400 | 8_3:-35525416 | Msa1286780:three_prime_UTR |
AAGGGAAAGAGAATGCTACC+AGG | 0.619795 | 8_3:-35526446 | Msa1286780:CDS |
AAAATTTGCTCACTCTGGTG+AGG | 0.622334 | 8_3:-35527737 | Msa1286780:CDS |
AAACAGCAGGGTTTAAGCAA+GGG | 0.624269 | 8_3:-35527607 | Msa1286780:CDS |
AAGGGAAGATGCTTGAAACA+AGG | 0.631180 | 8_3:-35527589 | Msa1286780:CDS |
CAGGGGAAAAGCTACGTCGA+AGG | 0.638153 | 8_3:-35527464 | Msa1286780:CDS |
TGCAAAAGAAGGATTATAAG+GGG | 0.638284 | 8_3:-35527351 | Msa1286780:CDS |
GAAGAAGGTGTTCTTGCAAG+GGG | 0.643592 | 8_3:-35526396 | Msa1286780:three_prime_UTR |
AGTTCAAGTACAATGTTACA+GGG | 0.653116 | 8_3:-35526518 | Msa1286780:CDS |
AAAAGTCAACAATCAATGTG+AGG | 0.658578 | 8_3:-35525457 | Msa1286780:three_prime_UTR |
GTTGGTAACATGAAGTTTAG+GGG | 0.667862 | 8_3:-35527103 | Msa1286780:CDS |
AGTTTGTTTCAAAGCAGCAG+AGG | 0.674189 | 8_3:-35527018 | Msa1286780:CDS |
GGACCAGCATAAATATATGG+AGG | 0.674367 | 8_3:-35527230 | Msa1286780:CDS |
ACTACAACTACAAGAATTGG+GGG | 0.675114 | 8_3:-35527660 | Msa1286780:CDS |
CATGATTCTCCAACTCAACG+AGG | 0.701825 | 8_3:+35528597 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTAACAGTTATTAATTTTA+GGG | - | chr8_3:35525659-35525678 | Msa1286780:intron | 10.0% |
!! | TAAACTAAAAAGTAAATTAT+AGG | + | chr8_3:35527210-35527229 | None:intergenic | 10.0% |
!!! | TAGAATGATAATATTTTTTT+TGG | + | chr8_3:35527965-35527984 | None:intergenic | 10.0% |
!!! | TGAAAAATTTGTTTCAATTA+AGG | - | chr8_3:35525519-35525538 | Msa1286780:intron | 15.0% |
!!! | GAAAAATTTGTTTCAATTAA+GGG | - | chr8_3:35525520-35525539 | Msa1286780:intron | 15.0% |
!!! | CATTAACAGTTATTAATTTT+AGG | - | chr8_3:35525658-35525677 | Msa1286780:intron | 15.0% |
!!! | GCTATTAATTTATGTTTTTA+AGG | - | chr8_3:35525690-35525709 | Msa1286780:intron | 15.0% |
!! | TGAATAAAGATAAAATTTGT+AGG | + | chr8_3:35526998-35527017 | None:intergenic | 15.0% |
!!! | CATATCTAGAATTAAATATT+TGG | + | chr8_3:35527869-35527888 | None:intergenic | 15.0% |
!! | AATTATTATCACATTATTAC+AGG | - | chr8_3:35528336-35528355 | Msa1286780:intron | 15.0% |
!! | ATTATTATCACATTATTACA+GGG | - | chr8_3:35528337-35528356 | Msa1286780:intron | 15.0% |
!!! | GCATTGCATTTTTTTTTTTT+AGG | - | chr8_3:35525441-35525460 | Msa1286780:three_prime_UTR | 20.0% |
!! | GTTGTAATTATATTACATAC+AGG | - | chr8_3:35525730-35525749 | Msa1286780:intron | 20.0% |
!!! | TTTGATTTCTTATGTTGTTT+TGG | - | chr8_3:35525880-35525899 | Msa1286780:intron | 20.0% |
!!! | TATTAATCTGAATGTTTTGT+TGG | - | chr8_3:35526185-35526204 | Msa1286780:intron | 20.0% |
!! | TGGATAAAAAGAATTATGAA+AGG | - | chr8_3:35526409-35526428 | Msa1286780:three_prime_UTR | 20.0% |
!! | AAAGGAAAAGGAATAATAAT+AGG | - | chr8_3:35526894-35526913 | Msa1286780:CDS | 20.0% |
!! | AAGTAAATTATAGGATATCT+AGG | + | chr8_3:35527201-35527220 | None:intergenic | 20.0% |
!! | AATAAAAATTGCAATGAAGA+AGG | - | chr8_3:35527406-35527425 | Msa1286780:CDS | 20.0% |
!!! | TGATAATATTTTTTTTGGAC+AGG | + | chr8_3:35527960-35527979 | None:intergenic | 20.0% |
!!! | ATCCCTTTTGGAATATTTTT+TGG | - | chr8_3:35525953-35525972 | Msa1286780:intron | 25.0% |
!!! | TCCCTTTTGGAATATTTTTT+GGG | - | chr8_3:35525954-35525973 | Msa1286780:intron | 25.0% |
! | ACCCAAAAAATATTCCAAAA+GGG | + | chr8_3:35525958-35525977 | None:intergenic | 25.0% |
! | AACCCAAAAAATATTCCAAA+AGG | + | chr8_3:35525959-35525978 | None:intergenic | 25.0% |
!!! | TTTTTTGGGTTTTCCATTTT+CGG | - | chr8_3:35525968-35525987 | Msa1286780:intron | 25.0% |
! | ATGCAAAAGAAGGATTATAA+GGG | - | chr8_3:35526465-35526484 | Msa1286780:CDS | 25.0% |
!! | TGATGCATTTGATAATCATT+AGG | + | chr8_3:35527094-35527113 | None:intergenic | 25.0% |
!! | TAACTGTCACTTAATACAAA+GGG | + | chr8_3:35527150-35527169 | None:intergenic | 25.0% |
!! | ATAACTGTCACTTAATACAA+AGG | + | chr8_3:35527151-35527170 | None:intergenic | 25.0% |
! | AATTATAGGATATCTAGGAA+AGG | + | chr8_3:35527196-35527215 | None:intergenic | 25.0% |
! | AACAAAAAAAACTCTACCAT+CGG | - | chr8_3:35527329-35527348 | Msa1286780:CDS | 25.0% |
!!! | ATTAAGTTGATCGAAAAGAT+TGG | + | chr8_3:35527825-35527844 | None:intergenic | 25.0% |
! | TATGCAATGTTGTCAAATAA+TGG | + | chr8_3:35528078-35528097 | None:intergenic | 25.0% |
!!! | GAGCATTGAAACAAAAAATA+CGG | + | chr8_3:35528288-35528307 | None:intergenic | 25.0% |
!!! | TTTTTTGTTTCAATGCTCTT+TGG | - | chr8_3:35528290-35528309 | Msa1286780:intron | 25.0% |
!! | TAATAATTATGCATTAGCCT+TGG | + | chr8_3:35528324-35528343 | None:intergenic | 25.0% |
! | TTTGTATTCCTCAAAAAGAA+TGG | + | chr8_3:35528444-35528463 | None:intergenic | 25.0% |
!!! | TTTTTCCCTTATTTTGAAAC+TGG | + | chr8_3:35528487-35528506 | None:intergenic | 25.0% |
! | TGTACTAACTCTTGTATATA+GGG | - | chr8_3:35528551-35528570 | Msa1286780:CDS | 25.0% |
!! | CAATGTTAGGTGATAAATTT+TGG | - | chr8_3:35528606-35528625 | Msa1286780:five_prime_UTR | 25.0% |
!! | TGCAAAAAGAATTTAAGGTT+TGG | + | chr8_3:35528652-35528671 | None:intergenic | 25.0% |
! | GGTAATGCAAAAAGAATTTA+AGG | + | chr8_3:35528657-35528676 | None:intergenic | 25.0% |
! | ATTCCGGATTTCACATTTTT+AGG | - | chr8_3:35525337-35525356 | Msa1286780:three_prime_UTR | 30.0% |
! | TTCCGGATTTCACATTTTTA+GGG | - | chr8_3:35525338-35525357 | Msa1286780:three_prime_UTR | 30.0% |
AACCCTAAAAATGTGAAATC+CGG | + | chr8_3:35525343-35525362 | None:intergenic | 30.0% | |
! | TTATTTGTTCTTCGTTTTCG+TGG | - | chr8_3:35525490-35525509 | Msa1286780:intron | 30.0% |
TGAAAATATGTGAGTGAGTT+TGG | - | chr8_3:35525808-35525827 | Msa1286780:intron | 30.0% | |
! | TGAGTGAGTTTGGATTTTTA+TGG | - | chr8_3:35525818-35525837 | Msa1286780:intron | 30.0% |
TATTCCAAAAGGGATTCTTA+CGG | + | chr8_3:35525948-35525967 | None:intergenic | 30.0% | |
! | GTTGCAATCAAATCATTTTC+AGG | - | chr8_3:35526025-35526044 | Msa1286780:intron | 30.0% |
AACACTACAACTACAAGAAT+TGG | - | chr8_3:35526154-35526173 | Msa1286780:intron | 30.0% | |
ACACTACAACTACAAGAATT+GGG | - | chr8_3:35526155-35526174 | Msa1286780:intron | 30.0% | |
!!! | TTGAAACAAGGTTCTAGTTT+TGG | - | chr8_3:35526240-35526259 | Msa1286780:intron | 30.0% |
!!! | GTTCTAGTTTTGGTTATGAA+GGG | - | chr8_3:35526250-35526269 | Msa1286780:intron | 30.0% |
AGGATTGATGAGTGAAAAAT+CGG | - | chr8_3:35526308-35526327 | Msa1286780:intron | 30.0% | |
GATGCAAAAGAAGGATTATA+AGG | - | chr8_3:35526464-35526483 | Msa1286780:CDS | 30.0% | |
TGCAAAAGAAGGATTATAAG+GGG | - | chr8_3:35526466-35526485 | Msa1286780:CDS | 30.0% | |
!! | ATGTTGGTAACATGAAGTTT+AGG | - | chr8_3:35526712-35526731 | Msa1286780:intron | 30.0% |
!! | TGTTGGTAACATGAAGTTTA+GGG | - | chr8_3:35526713-35526732 | Msa1286780:intron | 30.0% |
ACAAACTTAGCTTCATAACT+AGG | + | chr8_3:35526786-35526805 | None:intergenic | 30.0% | |
GGAAAAGGAATAATAATAGG+AGG | - | chr8_3:35526897-35526916 | Msa1286780:CDS | 30.0% | |
AAAAATGCATGACTTGAAGA+CGG | + | chr8_3:35526964-35526983 | None:intergenic | 30.0% | |
! | TGCATTTGATAATCATTAGG+TGG | + | chr8_3:35527091-35527110 | None:intergenic | 30.0% |
AAGTTCAAGTACAATGTTAC+AGG | - | chr8_3:35527298-35527317 | Msa1286780:CDS | 30.0% | |
AGTTCAAGTACAATGTTACA+GGG | - | chr8_3:35527299-35527318 | Msa1286780:CDS | 30.0% | |
TTTATTCACTGTCAATTTCC+TGG | + | chr8_3:35527392-35527411 | None:intergenic | 30.0% | |
AGAACATAATCGTCAACATA+AGG | - | chr8_3:35527468-35527487 | Msa1286780:CDS | 30.0% | |
TTGGAAAGTTTACAGGATAA+TGG | + | chr8_3:35527728-35527747 | None:intergenic | 30.0% | |
ATTATCCTGTAAACTTTCCA+AGG | - | chr8_3:35527727-35527746 | Msa1286780:CDS | 30.0% | |
! | CAACTTAATTTTTCTTGCCA+TGG | - | chr8_3:35527836-35527855 | Msa1286780:intron | 30.0% |
!! | TGTACTTCAGTTTTATGACT+TGG | - | chr8_3:35528230-35528249 | Msa1286780:intron | 30.0% |
AAAAGTCAACAATCAATGTG+AGG | - | chr8_3:35528360-35528379 | Msa1286780:intron | 30.0% | |
! | ATAGCAATCCATTCTTTTTG+AGG | - | chr8_3:35528433-35528452 | Msa1286780:intron | 30.0% |
! | GACTCATTGAAGCTTTATAT+TGG | - | chr8_3:35528524-35528543 | Msa1286780:intron | 30.0% |
GTGTACTAACTCTTGTATAT+AGG | - | chr8_3:35528550-35528569 | Msa1286780:CDS | 30.0% | |
AATTTATCACCTAACATTGC+AGG | + | chr8_3:35528605-35528624 | None:intergenic | 30.0% | |
! | TCTTTTTGCATTACCTTTTG+TGG | - | chr8_3:35528662-35528681 | Msa1286780:five_prime_UTR | 30.0% |
! | ATGGAAGCTTCTAAGAAGAA+CGG | - | chr8_3:35525240-35525259 | Msa1286780:three_prime_UTR | 35.0% |
AAGAAATGAGAACAGAGTGT+TGG | + | chr8_3:35525298-35525317 | None:intergenic | 35.0% | |
!!! | ACTCTCATTTTCATCGATTC+CGG | - | chr8_3:35525321-35525340 | Msa1286780:three_prime_UTR | 35.0% |
! | AACAATTTGAAGCACCTATG+TGG | - | chr8_3:35525753-35525772 | Msa1286780:intron | 35.0% |
! | ACAATTTGAAGCACCTATGT+GGG | - | chr8_3:35525754-35525773 | Msa1286780:intron | 35.0% |
TTGATTGTTGAAGCTAACTC+TGG | - | chr8_3:35525782-35525801 | Msa1286780:intron | 35.0% | |
ATTCCAAAAGGGATTCTTAC+GGG | + | chr8_3:35525947-35525966 | None:intergenic | 35.0% | |
! | AAGTCAAAATTTGCTCACTC+TGG | - | chr8_3:35526075-35526094 | Msa1286780:intron | 35.0% |
CACTACAACTACAAGAATTG+GGG | - | chr8_3:35526156-35526175 | Msa1286780:intron | 35.0% | |
ACTACAACTACAAGAATTGG+GGG | - | chr8_3:35526157-35526176 | Msa1286780:intron | 35.0% | |
!! | TGTTTTGTTGGATAAACAGC+AGG | - | chr8_3:35526197-35526216 | Msa1286780:intron | 35.0% |
!! | GTTTTGTTGGATAAACAGCA+GGG | - | chr8_3:35526198-35526217 | Msa1286780:intron | 35.0% |
!!! | GGTTCTAGTTTTGGTTATGA+AGG | - | chr8_3:35526249-35526268 | Msa1286780:intron | 35.0% |
!!! | TAGTTTTGGTTATGAAGGGA+AGG | - | chr8_3:35526254-35526273 | Msa1286780:intron | 35.0% |
AATCAACGTCAAATGTTAGC+AGG | - | chr8_3:35526280-35526299 | Msa1286780:intron | 35.0% | |
TCAAATGTTAGCAGGACAAA+AGG | - | chr8_3:35526288-35526307 | Msa1286780:intron | 35.0% | |
GGATTGATGAGTGAAAAATC+GGG | - | chr8_3:35526309-35526328 | Msa1286780:intron | 35.0% | |
GATTGATGAGTGAAAAATCG+GGG | - | chr8_3:35526310-35526329 | Msa1286780:intron | 35.0% | |
! | TGACTTTTGAACACAATACC+AGG | - | chr8_3:35526334-35526353 | Msa1286780:three_prime_UTR | 35.0% |
! | GACTTTTGAACACAATACCA+GGG | - | chr8_3:35526335-35526354 | Msa1286780:three_prime_UTR | 35.0% |
! | ACTTTTGAACACAATACCAG+GGG | - | chr8_3:35526336-35526355 | Msa1286780:three_prime_UTR | 35.0% |
! | TGTTGGAAGTTCAAGTTCTA+TGG | - | chr8_3:35526389-35526408 | Msa1286780:three_prime_UTR | 35.0% |
! | TGAGAGTATGATGCAAAAGA+AGG | - | chr8_3:35526455-35526474 | Msa1286780:CDS | 35.0% |
!!! | TCAGTTAGAAGCGTTAGTTT+TGG | - | chr8_3:35526528-35526547 | Msa1286780:CDS | 35.0% |
!!! | CAGTTAGAAGCGTTAGTTTT+GGG | - | chr8_3:35526529-35526548 | Msa1286780:CDS | 35.0% |
TCAGGACCAGCATAAATATA+TGG | - | chr8_3:35526584-35526603 | Msa1286780:intron | 35.0% | |
ACACCTCCATATATTTATGC+TGG | + | chr8_3:35526593-35526612 | None:intergenic | 35.0% | |
! | TACATGACTTTTCCTAAGAC+TGG | + | chr8_3:35526664-35526683 | None:intergenic | 35.0% |
AACACCAAAAGTCTCAAAAG+TGG | - | chr8_3:35526683-35526702 | Msa1286780:intron | 35.0% | |
!!! | ATCTCCACTTTTGAGACTTT+TGG | + | chr8_3:35526690-35526709 | None:intergenic | 35.0% |
AAAAGTCTCAAAAGTGGAGA+TGG | - | chr8_3:35526689-35526708 | Msa1286780:intron | 35.0% | |
!! | GTTGGTAACATGAAGTTTAG+GGG | - | chr8_3:35526714-35526733 | Msa1286780:intron | 35.0% |
CGAAAATCACAGATAAGAAC+AGG | - | chr8_3:35526823-35526842 | Msa1286780:intron | 35.0% | |
GATGTCTTGGATTTATTACC+AGG | + | chr8_3:35526855-35526874 | None:intergenic | 35.0% | |
CATCAATGTTGCAAAGTCAT+TGG | - | chr8_3:35526926-35526945 | Msa1286780:CDS | 35.0% | |
TCTGAATGAGTTAGCAAATC+TGG | - | chr8_3:35527020-35527039 | Msa1286780:CDS | 35.0% | |
AAACTCTACCATCGGTAAAA+AGG | - | chr8_3:35527337-35527356 | Msa1286780:CDS | 35.0% | |
GTTGCTAGACATCTCAATTA+AGG | + | chr8_3:35527667-35527686 | None:intergenic | 35.0% | |
GAATGATTAATCACGTTCCT+TGG | + | chr8_3:35527747-35527766 | None:intergenic | 35.0% | |
AAATATTTGGTCAGAAGCCA+TGG | + | chr8_3:35527856-35527875 | None:intergenic | 35.0% | |
TTGTCAAATAATGGCTACTG+TGG | + | chr8_3:35528069-35528088 | None:intergenic | 35.0% | |
TGTTGTCAAATAGCAGCTAT+AGG | + | chr8_3:35528165-35528184 | None:intergenic | 35.0% | |
GACAACATTGTTTCAACTCA+CGG | - | chr8_3:35528178-35528197 | Msa1286780:intron | 35.0% | |
GAAACAAAAAATACGGCGAA+AGG | + | chr8_3:35528281-35528300 | None:intergenic | 35.0% | |
TTGAGGAATACAAAAACTCC+AGG | - | chr8_3:35528450-35528469 | Msa1286780:intron | 35.0% | |
AAAAACTCCAGGAAAGAAGT+TGG | - | chr8_3:35528461-35528480 | Msa1286780:intron | 35.0% | |
AGTTGGCCAGTTTCAAAATA+AGG | - | chr8_3:35528478-35528497 | Msa1286780:intron | 35.0% | |
GTTGGCCAGTTTCAAAATAA+GGG | - | chr8_3:35528479-35528498 | Msa1286780:intron | 35.0% | |
! | TGATGATGAAAAGCCACAAA+AGG | + | chr8_3:35528678-35528697 | None:intergenic | 35.0% |
ACAATCAAATCTGCCCACAT+AGG | + | chr8_3:35525770-35525789 | None:intergenic | 40.0% | |
! | GGTTTTCCATTTTCGGTTCA+GGG | - | chr8_3:35525975-35525994 | Msa1286780:intron | 40.0% |
GTAAAACCCTGAACCGAAAA+TGG | + | chr8_3:35525984-35526003 | None:intergenic | 40.0% | |
! | AAAATTTGCTCACTCTGGTG+AGG | - | chr8_3:35526080-35526099 | Msa1286780:intron | 40.0% |
CTTGATTTCGAGACTGAAGA+AGG | + | chr8_3:35526129-35526148 | None:intergenic | 40.0% | |
TCTTCAGTCTCGAAATCAAG+AGG | - | chr8_3:35526129-35526148 | Msa1286780:intron | 40.0% | |
AACTACAAGAATTGGGGGAA+AGG | - | chr8_3:35526162-35526181 | Msa1286780:intron | 40.0% | |
TAAACAGCAGGGTTTAAGCA+AGG | - | chr8_3:35526209-35526228 | Msa1286780:intron | 40.0% | |
AAACAGCAGGGTTTAAGCAA+GGG | - | chr8_3:35526210-35526229 | Msa1286780:intron | 40.0% | |
AAGGGAAGATGCTTGAAACA+AGG | - | chr8_3:35526228-35526247 | Msa1286780:intron | 40.0% | |
! | AAGGCTAGTTGCAATCTTGT+TGG | - | chr8_3:35526372-35526391 | Msa1286780:three_prime_UTR | 40.0% |
TGAAAGGTCTACAAGAAGCA+TGG | - | chr8_3:35526425-35526444 | Msa1286780:exon | 40.0% | |
! | GGATTATAAGGGGCATAAGA+AGG | - | chr8_3:35526476-35526495 | Msa1286780:CDS | 40.0% |
GGACCAGCATAAATATATGG+AGG | - | chr8_3:35526587-35526606 | Msa1286780:intron | 40.0% | |
TCAAAAGTGGAGATGGATGT+TGG | - | chr8_3:35526696-35526715 | Msa1286780:intron | 40.0% | |
! | AGTTTGTTTCAAAGCAGCAG+AGG | - | chr8_3:35526799-35526818 | Msa1286780:intron | 40.0% |
GTTTGTTTCAAAGCAGCAGA+GGG | - | chr8_3:35526800-35526819 | Msa1286780:intron | 40.0% | |
! | AGCTGTAATGGAAGATGTCT+TGG | + | chr8_3:35526868-35526887 | None:intergenic | 40.0% |
ACATCTTCCATTACAGCTGA+AGG | - | chr8_3:35526870-35526889 | Msa1286780:intron | 40.0% | |
TCCATTACAGCTGAAGGAAA+AGG | - | chr8_3:35526876-35526895 | Msa1286780:intron | 40.0% | |
! | TCCTTTTCCTTCAGCTGTAA+TGG | + | chr8_3:35526880-35526899 | None:intergenic | 40.0% |
ACAGCTGAAGGAAAAGGAAA+AGG | - | chr8_3:35526882-35526901 | Msa1286780:intron | 40.0% | |
ATGAGTTAGCAAATCTGGTC+CGG | - | chr8_3:35527025-35527044 | Msa1286780:CDS | 40.0% | |
! | AATGCCTGTTTTATACGAGC+CGG | + | chr8_3:35527047-35527066 | None:intergenic | 40.0% |
TATGTGCTTATCGAGAATGC+TGG | - | chr8_3:35527242-35527261 | Msa1286780:CDS | 40.0% | |
ATGTGCTTATCGAGAATGCT+GGG | - | chr8_3:35527243-35527262 | Msa1286780:CDS | 40.0% | |
! | TGCTGGGTTTACATTTTCAC+AGG | - | chr8_3:35527259-35527278 | Msa1286780:CDS | 40.0% |
TAAAAAGGAGGCCTTTGACA+AGG | - | chr8_3:35527352-35527371 | Msa1286780:CDS | 40.0% | |
AAAAAGGAGGCCTTTGACAA+GGG | - | chr8_3:35527353-35527372 | Msa1286780:CDS | 40.0% | |
CATTCTCTTTCCCTTGTCAA+AGG | + | chr8_3:35527366-35527385 | None:intergenic | 40.0% | |
!! | ATGAAGAAGGTGTTCTTGCA+AGG | - | chr8_3:35527419-35527438 | Msa1286780:CDS | 40.0% |
!! | TGAAGAAGGTGTTCTTGCAA+GGG | - | chr8_3:35527420-35527439 | Msa1286780:CDS | 40.0% |
CAACATAAGGATGACAAAGC+AGG | - | chr8_3:35527481-35527500 | Msa1286780:CDS | 40.0% | |
! | ATCAGCAGCTTTGACAATAC+TGG | - | chr8_3:35527504-35527523 | Msa1286780:CDS | 40.0% |
ACGTTCCTTGGAAAGTTTAC+AGG | + | chr8_3:35527735-35527754 | None:intergenic | 40.0% | |
AACACCTGTGTTGTCAATCA+CGG | - | chr8_3:35527990-35528009 | Msa1286780:intron | 40.0% | |
ACAGCAATGCTATAGTGTAG+TGG | + | chr8_3:35528140-35528159 | None:intergenic | 40.0% | |
CAGCTAGAAGGATTTACTTG+CGG | - | chr8_3:35528401-35528420 | Msa1286780:intron | 40.0% | |
GAAGGATTTACTTGCGGTAA+TGG | - | chr8_3:35528407-35528426 | Msa1286780:intron | 40.0% | |
TCAATGAGTCGTGTGATATC+AGG | + | chr8_3:35528514-35528533 | None:intergenic | 40.0% | |
ACTCTTGTATATAGGGTGAG+TGG | - | chr8_3:35528558-35528577 | Msa1286780:CDS | 40.0% | |
CTCTTGTATATAGGGTGAGT+GGG | - | chr8_3:35528559-35528578 | Msa1286780:CDS | 40.0% | |
AACAATCGTGTGCGAAACGA+CGG | + | chr8_3:35525158-35525177 | None:intergenic | 45.0% | |
CTTCTCAGAACTCGAATCGA+TGG | + | chr8_3:35525188-35525207 | None:intergenic | 45.0% | |
TTTCACAGTCCTCGTTGAGT+TGG | - | chr8_3:35525211-35525230 | Msa1286780:three_prime_UTR | 45.0% | |
CATGATTCTCCAACTCAACG+AGG | + | chr8_3:35525223-35525242 | None:intergenic | 45.0% | |
!! | CTCGTTGAGTTGGAGAATCA+TGG | - | chr8_3:35525221-35525240 | Msa1286780:three_prime_UTR | 45.0% |
ACGGCATCTTCATCGATCAT+TGG | - | chr8_3:35525259-35525278 | Msa1286780:three_prime_UTR | 45.0% | |
CGGCATCTTCATCGATCATT+GGG | - | chr8_3:35525260-35525279 | Msa1286780:three_prime_UTR | 45.0% | |
! | CATCGATCATTGGGCTTTTC+TGG | - | chr8_3:35525269-35525288 | Msa1286780:three_prime_UTR | 45.0% |
! | GTTGCAGAACTGATGATGAC+TGG | - | chr8_3:35525907-35525926 | Msa1286780:intron | 45.0% |
! | GGGTTTTCCATTTTCGGTTC+AGG | - | chr8_3:35525974-35525993 | Msa1286780:intron | 45.0% |
! | CGGTTCAGGGTTTTACTGAA+TGG | - | chr8_3:35525988-35526007 | Msa1286780:intron | 45.0% |
AGTAGAAGCCTCAAGAGTTC+AGG | - | chr8_3:35526566-35526585 | Msa1286780:intron | 45.0% | |
CAGTGAGTAGTACCAGTCTT+AGG | - | chr8_3:35526649-35526668 | Msa1286780:intron | 45.0% | |
! | TCTTCTGGGAAGTCTAGTGT+TGG | - | chr8_3:35526747-35526766 | Msa1286780:intron | 45.0% |
! | CTTCTGGGAAGTCTAGTGTT+GGG | - | chr8_3:35526748-35526767 | Msa1286780:intron | 45.0% |
GATAAGAACAGGTGCAATCC+TGG | - | chr8_3:35526834-35526853 | Msa1286780:intron | 45.0% | |
CTCTACCATCGGTAAAAAGG+AGG | - | chr8_3:35527340-35527359 | Msa1286780:CDS | 45.0% | |
! | AAAGGCCTCCTTTTTACCGA+TGG | + | chr8_3:35527348-35527367 | None:intergenic | 45.0% |
AAGGGAAAGAGAATGCTACC+AGG | - | chr8_3:35527371-35527390 | Msa1286780:CDS | 45.0% | |
!! | GAAGAAGGTGTTCTTGCAAG+GGG | - | chr8_3:35527421-35527440 | Msa1286780:CDS | 45.0% |
CAATCCGTGATTGACAACAC+AGG | + | chr8_3:35527997-35528016 | None:intergenic | 45.0% | |
GCTCTTTGGCAAATCTTCCA+AGG | - | chr8_3:35528304-35528323 | Msa1286780:intron | 45.0% | |
CAATGTGAGGCAAAGAAACC+AGG | - | chr8_3:35528373-35528392 | Msa1286780:intron | 45.0% | |
AACCAGGTAATCCAGCTAGA+AGG | - | chr8_3:35528389-35528408 | Msa1286780:intron | 45.0% | |
! | ATCCTTCTAGCTGGATTACC+TGG | + | chr8_3:35528394-35528413 | None:intergenic | 45.0% |
CGCAAGTAAATCCTTCTAGC+TGG | + | chr8_3:35528403-35528422 | None:intergenic | 45.0% | |
AAACTGGCCAACTTCTTTCC+TGG | + | chr8_3:35528471-35528490 | None:intergenic | 45.0% | |
TATAGGGTGAGTGGGTAGTA+TGG | - | chr8_3:35528567-35528586 | Msa1286780:CDS | 45.0% | |
ATCACCTAACATTGCAGGCT+GGG | + | chr8_3:35528600-35528619 | None:intergenic | 45.0% | |
TATCACCTAACATTGCAGGC+TGG | + | chr8_3:35528601-35528620 | None:intergenic | 45.0% | |
!! | TTAAATTATAATTTAACAAA+AGG | + | chr8_3:35527699-35527718 | None:intergenic | 5.0% |
!! | TTGTTAAATTATAATTTAAA+AGG | - | chr8_3:35527700-35527719 | Msa1286780:CDS | 5.0% |
CCAAAAGGGATTCTTACGGG+TGG | + | chr8_3:35525944-35525963 | None:intergenic | 50.0% | |
! | CCACCCGTAAGAATCCCTTT+TGG | - | chr8_3:35525941-35525960 | Msa1286780:intron | 50.0% |
ATTTGCTCACTCTGGTGAGG+AGG | - | chr8_3:35526083-35526102 | Msa1286780:intron | 50.0% | |
! | GAGACTGAAGAAGGAAGTGC+CGG | + | chr8_3:35526120-35526139 | None:intergenic | 50.0% |
ATGCTGGTCCTGAACTCTTG+AGG | + | chr8_3:35526577-35526596 | None:intergenic | 50.0% | |
AGGGGTCGTAAATCGTCTTC+TGG | - | chr8_3:35526732-35526751 | Msa1286780:intron | 50.0% | |
GGGGTCGTAAATCGTCTTCT+GGG | - | chr8_3:35526733-35526752 | Msa1286780:intron | 50.0% | |
! | TGGTCCGGCTCGTATAAAAC+AGG | - | chr8_3:35527040-35527059 | Msa1286780:CDS | 50.0% |
TCACCTAACATTGCAGGCTG+GGG | + | chr8_3:35528599-35528618 | None:intergenic | 50.0% | |
ACTCGCGAGCAGACAACTGA+TGG | + | chr8_3:35526053-35526072 | None:intergenic | 55.0% | |
! | CTTCGACGTAGCTTTTCCCC+TGG | + | chr8_3:35526355-35526374 | None:intergenic | 55.0% |
CAGGGGAAAAGCTACGTCGA+AGG | - | chr8_3:35526353-35526372 | Msa1286780:three_prime_UTR | 55.0% | |
TGACCCCAGCCTGCAATGTT+AGG | - | chr8_3:35528593-35528612 | Msa1286780:exon | 55.0% | |
TCACTCTGGTGAGGAGGCAG+TGG | - | chr8_3:35526089-35526108 | Msa1286780:intron | 60.0% | |
TGAGGAGGCAGTGGCGTCGC+CGG | - | chr8_3:35526098-35526117 | Msa1286780:intron | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_3 | gene | 35525142 | 35528697 | 35525142 | ID=Msa1286780;Name=Msa1286780 |
chr8_3 | mRNA | 35525142 | 35528697 | 35525142 | ID=Msa1286780-mRNA-1;Parent=Msa1286780;Name=Msa1286780-mRNA-1;_AED=0.04;_eAED=0.04;_QI=98|1|1|1|0.8|0.66|6|465|389 |
chr8_3 | exon | 35525142 | 35525481 | 35525142 | ID=Msa1286780-mRNA-1:exon:10458;Parent=Msa1286780-mRNA-1 |
chr8_3 | exon | 35526314 | 35526558 | 35526314 | ID=Msa1286780-mRNA-1:exon:10457;Parent=Msa1286780-mRNA-1 |
chr8_3 | exon | 35526892 | 35527792 | 35526892 | ID=Msa1286780-mRNA-1:exon:10456;Parent=Msa1286780-mRNA-1 |
chr8_3 | exon | 35527893 | 35527925 | 35527893 | ID=Msa1286780-mRNA-1:exon:10455;Parent=Msa1286780-mRNA-1 |
chr8_3 | exon | 35528023 | 35528087 | 35528023 | ID=Msa1286780-mRNA-1:exon:10454;Parent=Msa1286780-mRNA-1 |
chr8_3 | exon | 35528549 | 35528697 | 35528549 | ID=Msa1286780-mRNA-1:exon:10453;Parent=Msa1286780-mRNA-1 |
chr8_3 | five_prime_UTR | 35528600 | 35528697 | 35528600 | ID=Msa1286780-mRNA-1:five_prime_utr;Parent=Msa1286780-mRNA-1 |
chr8_3 | CDS | 35528549 | 35528599 | 35528549 | ID=Msa1286780-mRNA-1:cds;Parent=Msa1286780-mRNA-1 |
chr8_3 | CDS | 35528023 | 35528087 | 35528023 | ID=Msa1286780-mRNA-1:cds;Parent=Msa1286780-mRNA-1 |
chr8_3 | CDS | 35527893 | 35527925 | 35527893 | ID=Msa1286780-mRNA-1:cds;Parent=Msa1286780-mRNA-1 |
chr8_3 | CDS | 35526892 | 35527792 | 35526892 | ID=Msa1286780-mRNA-1:cds;Parent=Msa1286780-mRNA-1 |
chr8_3 | CDS | 35526439 | 35526558 | 35526439 | ID=Msa1286780-mRNA-1:cds;Parent=Msa1286780-mRNA-1 |
chr8_3 | three_prime_UTR | 35526314 | 35526438 | 35526314 | ID=Msa1286780-mRNA-1:three_prime_utr;Parent=Msa1286780-mRNA-1 |
chr8_3 | three_prime_UTR | 35525142 | 35525481 | 35525142 | ID=Msa1286780-mRNA-1:three_prime_utr;Parent=Msa1286780-mRNA-1 |
Gene Sequence |
Protein sequence |