AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1286780


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1286780 MtrunA17_Chr8g0360801 86.076 395 39 4 1 383 1 391 0.0 637
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 107 sgRNAs with CRISPR-Local

Find 215 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATGTTAGGTGATAAATTT+TGG 0.145929 8_3:-35525211 Msa1286780:three_prime_UTR
AGTTGGCCAGTTTCAAAATA+AGG 0.226257 8_3:-35525339 Msa1286780:three_prime_UTR
TGTTGGAAGTTCAAGTTCTA+TGG 0.256545 8_3:-35527428 Msa1286780:CDS
AACACTACAACTACAAGAAT+TGG 0.271431 8_3:-35527663 Msa1286780:CDS
AGGGGTCGTAAATCGTCTTC+TGG 0.277018 8_3:-35527085 Msa1286780:CDS
GATGCAAAAGAAGGATTATA+AGG 0.286391 8_3:-35527353 Msa1286780:CDS
TGTACTAACTCTTGTATATA+GGG 0.293798 8_3:-35525266 Msa1286780:three_prime_UTR
TTGAAACAAGGTTCTAGTTT+TGG 0.295002 8_3:-35527577 Msa1286780:CDS
GTGTACTAACTCTTGTATAT+AGG 0.299171 8_3:-35525267 Msa1286780:three_prime_UTR
AAACTGGCCAACTTCTTTCC+TGG 0.305393 8_3:+35525349 None:intergenic
AAACTCTACCATCGGTAAAA+AGG 0.306602 8_3:-35526480 Msa1286780:CDS
GACTCATTGAAGCTTTATAT+TGG 0.320301 8_3:-35525293 Msa1286780:three_prime_UTR
AAAGGAAAAGGAATAATAAT+AGG 0.322246 8_3:-35526923 Msa1286780:CDS
TGTTGGTAACATGAAGTTTA+GGG 0.341584 8_3:-35527104 Msa1286780:CDS
ATGTTGGTAACATGAAGTTT+AGG 0.350395 8_3:-35527105 Msa1286780:CDS
TTTATTCACTGTCAATTTCC+TGG 0.361000 8_3:+35526428 None:intergenic
AAGTTCAAGTACAATGTTAC+AGG 0.361419 8_3:-35526519 Msa1286780:CDS
TATAGGGTGAGTGGGTAGTA+TGG 0.366049 8_3:-35525250 Msa1286780:three_prime_UTR
GAAGGATTTACTTGCGGTAA+TGG 0.379250 8_3:-35525410 Msa1286780:three_prime_UTR
AATTTATCACCTAACATTGC+AGG 0.381514 8_3:+35525215 None:intergenic
CAGTGAGTAGTACCAGTCTT+AGG 0.383306 8_3:-35527168 Msa1286780:CDS
TCAGGACCAGCATAAATATA+TGG 0.383753 8_3:-35527233 Msa1286780:CDS
ATGCAAAAGAAGGATTATAA+GGG 0.390439 8_3:-35527352 Msa1286780:CDS
ACACTACAACTACAAGAATT+GGG 0.394132 8_3:-35527662 Msa1286780:CDS
TGACCCCAGCCTGCAATGTT+AGG 0.394505 8_3:-35525224 Msa1286780:three_prime_UTR
TCAATGAGTCGTGTGATATC+AGG 0.402861 8_3:+35525306 None:intergenic
ATCACCTAACATTGCAGGCT+GGG 0.405445 8_3:+35525220 None:intergenic
CGGCATCTTCATCGATCATT+GGG 0.408596 8_3:-35528557 Msa1286780:CDS
GTTGGCCAGTTTCAAAATAA+GGG 0.409153 8_3:-35525338 Msa1286780:three_prime_UTR
ATCAGCAGCTTTGACAATAC+TGG 0.420962 8_3:-35526313 Msa1286780:intron
AGCTGTAATGGAAGATGTCT+TGG 0.424271 8_3:+35526952 None:intergenic
ACGGCATCTTCATCGATCAT+TGG 0.427822 8_3:-35528558 Msa1286780:CDS
AAGGCTAGTTGCAATCTTGT+TGG 0.439609 8_3:-35527445 Msa1286780:CDS
TCAGTTAGAAGCGTTAGTTT+TGG 0.442082 8_3:-35527289 Msa1286780:CDS
GGGGTCGTAAATCGTCTTCT+GGG 0.444556 8_3:-35527084 Msa1286780:CDS
ATCCTTCTAGCTGGATTACC+TGG 0.444687 8_3:+35525426 None:intergenic
AACCAGGTAATCCAGCTAGA+AGG 0.446703 8_3:-35525428 Msa1286780:three_prime_UTR
CATCAATGTTGCAAAGTCAT+TGG 0.449370 8_3:-35526891 Msa1286780:intron
CGCAAGTAAATCCTTCTAGC+TGG 0.462244 8_3:+35525417 None:intergenic
TCCATTACAGCTGAAGGAAA+AGG 0.468562 8_3:-35526941 Msa1286780:CDS
CGAAAATCACAGATAAGAAC+AGG 0.470754 8_3:-35526994 Msa1286780:CDS
GATAAGAACAGGTGCAATCC+TGG 0.472976 8_3:-35526983 Msa1286780:CDS
CTTGATTTCGAGACTGAAGA+AGG 0.477777 8_3:+35527691 None:intergenic
GATGTCTTGGATTTATTACC+AGG 0.480862 8_3:+35526965 None:intergenic
AGAACATAATCGTCAACATA+AGG 0.482359 8_3:-35526349 Msa1286780:three_prime_UTR
CATTCTCTTTCCCTTGTCAA+AGG 0.484404 8_3:+35526454 None:intergenic
ACAAACTTAGCTTCATAACT+AGG 0.487569 8_3:+35527034 None:intergenic
CTCGTTGAGTTGGAGAATCA+TGG 0.489131 8_3:-35528596 Msa1286780:exon
TCAAATGTTAGCAGGACAAA+AGG 0.493414 8_3:-35527529 Msa1286780:CDS
AGTAGAAGCCTCAAGAGTTC+AGG 0.496950 8_3:-35527251 Msa1286780:CDS
TCACTCTGGTGAGGAGGCAG+TGG 0.497952 8_3:-35527728 Msa1286780:CDS
TTGATTGTTGAAGCTAACTC+TGG 0.505940 8_3:-35528035 Msa1286780:CDS
TATCACCTAACATTGCAGGC+TGG 0.507265 8_3:+35525219 None:intergenic
TCTTCTGGGAAGTCTAGTGT+TGG 0.508703 8_3:-35527070 Msa1286780:CDS
ACAGCTGAAGGAAAAGGAAA+AGG 0.511415 8_3:-35526935 Msa1286780:CDS
ATGCTGGTCCTGAACTCTTG+AGG 0.511672 8_3:+35527243 None:intergenic
TGAGGAGGCAGTGGCGTCGC+CGG 0.512983 8_3:-35527719 Msa1286780:CDS
AAAAGTCTCAAAAGTGGAGA+TGG 0.515736 8_3:-35527128 Msa1286780:CDS
AATCAACGTCAAATGTTAGC+AGG 0.515842 8_3:-35527537 Msa1286780:CDS
TGATGATGAAAAGCCACAAA+AGG 0.516913 8_3:+35525142 None:intergenic
AAGTCAAAATTTGCTCACTC+TGG 0.517195 8_3:-35527742 Msa1286780:CDS
TTTCACAGTCCTCGTTGAGT+TGG 0.519188 8_3:-35528606 Msa1286780:five_prime_UTR
AACAATTTGAAGCACCTATG+TGG 0.521866 8_3:-35528064 Msa1286780:CDS
GGATTATAAGGGGCATAAGA+AGG 0.525077 8_3:-35527341 Msa1286780:CDS
ATGAAGAAGGTGTTCTTGCA+AGG 0.525891 8_3:-35526398 Msa1286780:three_prime_UTR
ACTCGCGAGCAGACAACTGA+TGG 0.536082 8_3:+35527767 None:intergenic
TCACCTAACATTGCAGGCTG+GGG 0.537633 8_3:+35525221 None:intergenic
AACACCAAAAGTCTCAAAAG+TGG 0.540910 8_3:-35527134 Msa1286780:CDS
CTCTTGTATATAGGGTGAGT+GGG 0.541586 8_3:-35525258 Msa1286780:three_prime_UTR
ACATCTTCCATTACAGCTGA+AGG 0.548952 8_3:-35526947 Msa1286780:CDS
GGAAAAGGAATAATAATAGG+AGG 0.550465 8_3:-35526920 Msa1286780:CDS
CTTCTGGGAAGTCTAGTGTT+GGG 0.550470 8_3:-35527069 Msa1286780:CDS
AACAATCGTGTGCGAAACGA+CGG 0.550605 8_3:+35528662 None:intergenic
TGAGAGTATGATGCAAAAGA+AGG 0.550843 8_3:-35527362 Msa1286780:CDS
CAATGTGAGGCAAAGAAACC+AGG 0.556991 8_3:-35525444 Msa1286780:three_prime_UTR
ACACCTCCATATATTTATGC+TGG 0.557766 8_3:+35527227 None:intergenic
TCAAAAGTGGAGATGGATGT+TGG 0.563203 8_3:-35527121 Msa1286780:CDS
CACTACAACTACAAGAATTG+GGG 0.565346 8_3:-35527661 Msa1286780:CDS
TCTTCAGTCTCGAAATCAAG+AGG 0.567981 8_3:-35527688 Msa1286780:CDS
ACTCTTGTATATAGGGTGAG+TGG 0.571473 8_3:-35525259 Msa1286780:three_prime_UTR
CTTCTCAGAACTCGAATCGA+TGG 0.578175 8_3:+35528632 None:intergenic
CAACATAAGGATGACAAAGC+AGG 0.583166 8_3:-35526336 Msa1286780:three_prime_UTR
GTTTGTTTCAAAGCAGCAGA+GGG 0.585395 8_3:-35527017 Msa1286780:CDS
ATTTGCTCACTCTGGTGAGG+AGG 0.588243 8_3:-35527734 Msa1286780:CDS
TAAACAGCAGGGTTTAAGCA+AGG 0.588477 8_3:-35527608 Msa1286780:CDS
GAGACTGAAGAAGGAAGTGC+CGG 0.589263 8_3:+35527700 None:intergenic
TGAAGAAGGTGTTCTTGCAA+GGG 0.589743 8_3:-35526397 Msa1286780:three_prime_UTR
ACAATTTGAAGCACCTATGT+GGG 0.592746 8_3:-35528063 Msa1286780:CDS
ACAATCAAATCTGCCCACAT+AGG 0.600457 8_3:+35528050 None:intergenic
GTTGCAGAACTGATGATGAC+TGG 0.605883 8_3:-35527910 Msa1286780:intron
ATGGAAGCTTCTAAGAAGAA+CGG 0.610680 8_3:-35528577 Msa1286780:CDS
TGAAAGGTCTACAAGAAGCA+TGG 0.613540 8_3:-35527392 Msa1286780:CDS
CAGCTAGAAGGATTTACTTG+CGG 0.614400 8_3:-35525416 Msa1286780:three_prime_UTR
AAGGGAAAGAGAATGCTACC+AGG 0.619795 8_3:-35526446 Msa1286780:CDS
AAAATTTGCTCACTCTGGTG+AGG 0.622334 8_3:-35527737 Msa1286780:CDS
AAACAGCAGGGTTTAAGCAA+GGG 0.624269 8_3:-35527607 Msa1286780:CDS
AAGGGAAGATGCTTGAAACA+AGG 0.631180 8_3:-35527589 Msa1286780:CDS
CAGGGGAAAAGCTACGTCGA+AGG 0.638153 8_3:-35527464 Msa1286780:CDS
TGCAAAAGAAGGATTATAAG+GGG 0.638284 8_3:-35527351 Msa1286780:CDS
GAAGAAGGTGTTCTTGCAAG+GGG 0.643592 8_3:-35526396 Msa1286780:three_prime_UTR
AGTTCAAGTACAATGTTACA+GGG 0.653116 8_3:-35526518 Msa1286780:CDS
AAAAGTCAACAATCAATGTG+AGG 0.658578 8_3:-35525457 Msa1286780:three_prime_UTR
GTTGGTAACATGAAGTTTAG+GGG 0.667862 8_3:-35527103 Msa1286780:CDS
AGTTTGTTTCAAAGCAGCAG+AGG 0.674189 8_3:-35527018 Msa1286780:CDS
GGACCAGCATAAATATATGG+AGG 0.674367 8_3:-35527230 Msa1286780:CDS
ACTACAACTACAAGAATTGG+GGG 0.675114 8_3:-35527660 Msa1286780:CDS
CATGATTCTCCAACTCAACG+AGG 0.701825 8_3:+35528597 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTAACAGTTATTAATTTTA+GGG - chr8_3:35525659-35525678 Msa1286780:intron 10.0%
!! TAAACTAAAAAGTAAATTAT+AGG + chr8_3:35527210-35527229 None:intergenic 10.0%
!!! TAGAATGATAATATTTTTTT+TGG + chr8_3:35527965-35527984 None:intergenic 10.0%
!!! TGAAAAATTTGTTTCAATTA+AGG - chr8_3:35525519-35525538 Msa1286780:intron 15.0%
!!! GAAAAATTTGTTTCAATTAA+GGG - chr8_3:35525520-35525539 Msa1286780:intron 15.0%
!!! CATTAACAGTTATTAATTTT+AGG - chr8_3:35525658-35525677 Msa1286780:intron 15.0%
!!! GCTATTAATTTATGTTTTTA+AGG - chr8_3:35525690-35525709 Msa1286780:intron 15.0%
!! TGAATAAAGATAAAATTTGT+AGG + chr8_3:35526998-35527017 None:intergenic 15.0%
!!! CATATCTAGAATTAAATATT+TGG + chr8_3:35527869-35527888 None:intergenic 15.0%
!! AATTATTATCACATTATTAC+AGG - chr8_3:35528336-35528355 Msa1286780:intron 15.0%
!! ATTATTATCACATTATTACA+GGG - chr8_3:35528337-35528356 Msa1286780:intron 15.0%
!!! GCATTGCATTTTTTTTTTTT+AGG - chr8_3:35525441-35525460 Msa1286780:three_prime_UTR 20.0%
!! GTTGTAATTATATTACATAC+AGG - chr8_3:35525730-35525749 Msa1286780:intron 20.0%
!!! TTTGATTTCTTATGTTGTTT+TGG - chr8_3:35525880-35525899 Msa1286780:intron 20.0%
!!! TATTAATCTGAATGTTTTGT+TGG - chr8_3:35526185-35526204 Msa1286780:intron 20.0%
!! TGGATAAAAAGAATTATGAA+AGG - chr8_3:35526409-35526428 Msa1286780:three_prime_UTR 20.0%
!! AAAGGAAAAGGAATAATAAT+AGG - chr8_3:35526894-35526913 Msa1286780:CDS 20.0%
!! AAGTAAATTATAGGATATCT+AGG + chr8_3:35527201-35527220 None:intergenic 20.0%
!! AATAAAAATTGCAATGAAGA+AGG - chr8_3:35527406-35527425 Msa1286780:CDS 20.0%
!!! TGATAATATTTTTTTTGGAC+AGG + chr8_3:35527960-35527979 None:intergenic 20.0%
!!! ATCCCTTTTGGAATATTTTT+TGG - chr8_3:35525953-35525972 Msa1286780:intron 25.0%
!!! TCCCTTTTGGAATATTTTTT+GGG - chr8_3:35525954-35525973 Msa1286780:intron 25.0%
! ACCCAAAAAATATTCCAAAA+GGG + chr8_3:35525958-35525977 None:intergenic 25.0%
! AACCCAAAAAATATTCCAAA+AGG + chr8_3:35525959-35525978 None:intergenic 25.0%
!!! TTTTTTGGGTTTTCCATTTT+CGG - chr8_3:35525968-35525987 Msa1286780:intron 25.0%
! ATGCAAAAGAAGGATTATAA+GGG - chr8_3:35526465-35526484 Msa1286780:CDS 25.0%
!! TGATGCATTTGATAATCATT+AGG + chr8_3:35527094-35527113 None:intergenic 25.0%
!! TAACTGTCACTTAATACAAA+GGG + chr8_3:35527150-35527169 None:intergenic 25.0%
!! ATAACTGTCACTTAATACAA+AGG + chr8_3:35527151-35527170 None:intergenic 25.0%
! AATTATAGGATATCTAGGAA+AGG + chr8_3:35527196-35527215 None:intergenic 25.0%
! AACAAAAAAAACTCTACCAT+CGG - chr8_3:35527329-35527348 Msa1286780:CDS 25.0%
!!! ATTAAGTTGATCGAAAAGAT+TGG + chr8_3:35527825-35527844 None:intergenic 25.0%
! TATGCAATGTTGTCAAATAA+TGG + chr8_3:35528078-35528097 None:intergenic 25.0%
!!! GAGCATTGAAACAAAAAATA+CGG + chr8_3:35528288-35528307 None:intergenic 25.0%
!!! TTTTTTGTTTCAATGCTCTT+TGG - chr8_3:35528290-35528309 Msa1286780:intron 25.0%
!! TAATAATTATGCATTAGCCT+TGG + chr8_3:35528324-35528343 None:intergenic 25.0%
! TTTGTATTCCTCAAAAAGAA+TGG + chr8_3:35528444-35528463 None:intergenic 25.0%
!!! TTTTTCCCTTATTTTGAAAC+TGG + chr8_3:35528487-35528506 None:intergenic 25.0%
! TGTACTAACTCTTGTATATA+GGG - chr8_3:35528551-35528570 Msa1286780:CDS 25.0%
!! CAATGTTAGGTGATAAATTT+TGG - chr8_3:35528606-35528625 Msa1286780:five_prime_UTR 25.0%
!! TGCAAAAAGAATTTAAGGTT+TGG + chr8_3:35528652-35528671 None:intergenic 25.0%
! GGTAATGCAAAAAGAATTTA+AGG + chr8_3:35528657-35528676 None:intergenic 25.0%
! ATTCCGGATTTCACATTTTT+AGG - chr8_3:35525337-35525356 Msa1286780:three_prime_UTR 30.0%
! TTCCGGATTTCACATTTTTA+GGG - chr8_3:35525338-35525357 Msa1286780:three_prime_UTR 30.0%
AACCCTAAAAATGTGAAATC+CGG + chr8_3:35525343-35525362 None:intergenic 30.0%
! TTATTTGTTCTTCGTTTTCG+TGG - chr8_3:35525490-35525509 Msa1286780:intron 30.0%
TGAAAATATGTGAGTGAGTT+TGG - chr8_3:35525808-35525827 Msa1286780:intron 30.0%
! TGAGTGAGTTTGGATTTTTA+TGG - chr8_3:35525818-35525837 Msa1286780:intron 30.0%
TATTCCAAAAGGGATTCTTA+CGG + chr8_3:35525948-35525967 None:intergenic 30.0%
! GTTGCAATCAAATCATTTTC+AGG - chr8_3:35526025-35526044 Msa1286780:intron 30.0%
AACACTACAACTACAAGAAT+TGG - chr8_3:35526154-35526173 Msa1286780:intron 30.0%
ACACTACAACTACAAGAATT+GGG - chr8_3:35526155-35526174 Msa1286780:intron 30.0%
!!! TTGAAACAAGGTTCTAGTTT+TGG - chr8_3:35526240-35526259 Msa1286780:intron 30.0%
!!! GTTCTAGTTTTGGTTATGAA+GGG - chr8_3:35526250-35526269 Msa1286780:intron 30.0%
AGGATTGATGAGTGAAAAAT+CGG - chr8_3:35526308-35526327 Msa1286780:intron 30.0%
GATGCAAAAGAAGGATTATA+AGG - chr8_3:35526464-35526483 Msa1286780:CDS 30.0%
TGCAAAAGAAGGATTATAAG+GGG - chr8_3:35526466-35526485 Msa1286780:CDS 30.0%
!! ATGTTGGTAACATGAAGTTT+AGG - chr8_3:35526712-35526731 Msa1286780:intron 30.0%
!! TGTTGGTAACATGAAGTTTA+GGG - chr8_3:35526713-35526732 Msa1286780:intron 30.0%
ACAAACTTAGCTTCATAACT+AGG + chr8_3:35526786-35526805 None:intergenic 30.0%
GGAAAAGGAATAATAATAGG+AGG - chr8_3:35526897-35526916 Msa1286780:CDS 30.0%
AAAAATGCATGACTTGAAGA+CGG + chr8_3:35526964-35526983 None:intergenic 30.0%
! TGCATTTGATAATCATTAGG+TGG + chr8_3:35527091-35527110 None:intergenic 30.0%
AAGTTCAAGTACAATGTTAC+AGG - chr8_3:35527298-35527317 Msa1286780:CDS 30.0%
AGTTCAAGTACAATGTTACA+GGG - chr8_3:35527299-35527318 Msa1286780:CDS 30.0%
TTTATTCACTGTCAATTTCC+TGG + chr8_3:35527392-35527411 None:intergenic 30.0%
AGAACATAATCGTCAACATA+AGG - chr8_3:35527468-35527487 Msa1286780:CDS 30.0%
TTGGAAAGTTTACAGGATAA+TGG + chr8_3:35527728-35527747 None:intergenic 30.0%
ATTATCCTGTAAACTTTCCA+AGG - chr8_3:35527727-35527746 Msa1286780:CDS 30.0%
! CAACTTAATTTTTCTTGCCA+TGG - chr8_3:35527836-35527855 Msa1286780:intron 30.0%
!! TGTACTTCAGTTTTATGACT+TGG - chr8_3:35528230-35528249 Msa1286780:intron 30.0%
AAAAGTCAACAATCAATGTG+AGG - chr8_3:35528360-35528379 Msa1286780:intron 30.0%
! ATAGCAATCCATTCTTTTTG+AGG - chr8_3:35528433-35528452 Msa1286780:intron 30.0%
! GACTCATTGAAGCTTTATAT+TGG - chr8_3:35528524-35528543 Msa1286780:intron 30.0%
GTGTACTAACTCTTGTATAT+AGG - chr8_3:35528550-35528569 Msa1286780:CDS 30.0%
AATTTATCACCTAACATTGC+AGG + chr8_3:35528605-35528624 None:intergenic 30.0%
! TCTTTTTGCATTACCTTTTG+TGG - chr8_3:35528662-35528681 Msa1286780:five_prime_UTR 30.0%
! ATGGAAGCTTCTAAGAAGAA+CGG - chr8_3:35525240-35525259 Msa1286780:three_prime_UTR 35.0%
AAGAAATGAGAACAGAGTGT+TGG + chr8_3:35525298-35525317 None:intergenic 35.0%
!!! ACTCTCATTTTCATCGATTC+CGG - chr8_3:35525321-35525340 Msa1286780:three_prime_UTR 35.0%
! AACAATTTGAAGCACCTATG+TGG - chr8_3:35525753-35525772 Msa1286780:intron 35.0%
! ACAATTTGAAGCACCTATGT+GGG - chr8_3:35525754-35525773 Msa1286780:intron 35.0%
TTGATTGTTGAAGCTAACTC+TGG - chr8_3:35525782-35525801 Msa1286780:intron 35.0%
ATTCCAAAAGGGATTCTTAC+GGG + chr8_3:35525947-35525966 None:intergenic 35.0%
! AAGTCAAAATTTGCTCACTC+TGG - chr8_3:35526075-35526094 Msa1286780:intron 35.0%
CACTACAACTACAAGAATTG+GGG - chr8_3:35526156-35526175 Msa1286780:intron 35.0%
ACTACAACTACAAGAATTGG+GGG - chr8_3:35526157-35526176 Msa1286780:intron 35.0%
!! TGTTTTGTTGGATAAACAGC+AGG - chr8_3:35526197-35526216 Msa1286780:intron 35.0%
!! GTTTTGTTGGATAAACAGCA+GGG - chr8_3:35526198-35526217 Msa1286780:intron 35.0%
!!! GGTTCTAGTTTTGGTTATGA+AGG - chr8_3:35526249-35526268 Msa1286780:intron 35.0%
!!! TAGTTTTGGTTATGAAGGGA+AGG - chr8_3:35526254-35526273 Msa1286780:intron 35.0%
AATCAACGTCAAATGTTAGC+AGG - chr8_3:35526280-35526299 Msa1286780:intron 35.0%
TCAAATGTTAGCAGGACAAA+AGG - chr8_3:35526288-35526307 Msa1286780:intron 35.0%
GGATTGATGAGTGAAAAATC+GGG - chr8_3:35526309-35526328 Msa1286780:intron 35.0%
GATTGATGAGTGAAAAATCG+GGG - chr8_3:35526310-35526329 Msa1286780:intron 35.0%
! TGACTTTTGAACACAATACC+AGG - chr8_3:35526334-35526353 Msa1286780:three_prime_UTR 35.0%
! GACTTTTGAACACAATACCA+GGG - chr8_3:35526335-35526354 Msa1286780:three_prime_UTR 35.0%
! ACTTTTGAACACAATACCAG+GGG - chr8_3:35526336-35526355 Msa1286780:three_prime_UTR 35.0%
! TGTTGGAAGTTCAAGTTCTA+TGG - chr8_3:35526389-35526408 Msa1286780:three_prime_UTR 35.0%
! TGAGAGTATGATGCAAAAGA+AGG - chr8_3:35526455-35526474 Msa1286780:CDS 35.0%
!!! TCAGTTAGAAGCGTTAGTTT+TGG - chr8_3:35526528-35526547 Msa1286780:CDS 35.0%
!!! CAGTTAGAAGCGTTAGTTTT+GGG - chr8_3:35526529-35526548 Msa1286780:CDS 35.0%
TCAGGACCAGCATAAATATA+TGG - chr8_3:35526584-35526603 Msa1286780:intron 35.0%
ACACCTCCATATATTTATGC+TGG + chr8_3:35526593-35526612 None:intergenic 35.0%
! TACATGACTTTTCCTAAGAC+TGG + chr8_3:35526664-35526683 None:intergenic 35.0%
AACACCAAAAGTCTCAAAAG+TGG - chr8_3:35526683-35526702 Msa1286780:intron 35.0%
!!! ATCTCCACTTTTGAGACTTT+TGG + chr8_3:35526690-35526709 None:intergenic 35.0%
AAAAGTCTCAAAAGTGGAGA+TGG - chr8_3:35526689-35526708 Msa1286780:intron 35.0%
!! GTTGGTAACATGAAGTTTAG+GGG - chr8_3:35526714-35526733 Msa1286780:intron 35.0%
CGAAAATCACAGATAAGAAC+AGG - chr8_3:35526823-35526842 Msa1286780:intron 35.0%
GATGTCTTGGATTTATTACC+AGG + chr8_3:35526855-35526874 None:intergenic 35.0%
CATCAATGTTGCAAAGTCAT+TGG - chr8_3:35526926-35526945 Msa1286780:CDS 35.0%
TCTGAATGAGTTAGCAAATC+TGG - chr8_3:35527020-35527039 Msa1286780:CDS 35.0%
AAACTCTACCATCGGTAAAA+AGG - chr8_3:35527337-35527356 Msa1286780:CDS 35.0%
GTTGCTAGACATCTCAATTA+AGG + chr8_3:35527667-35527686 None:intergenic 35.0%
GAATGATTAATCACGTTCCT+TGG + chr8_3:35527747-35527766 None:intergenic 35.0%
AAATATTTGGTCAGAAGCCA+TGG + chr8_3:35527856-35527875 None:intergenic 35.0%
TTGTCAAATAATGGCTACTG+TGG + chr8_3:35528069-35528088 None:intergenic 35.0%
TGTTGTCAAATAGCAGCTAT+AGG + chr8_3:35528165-35528184 None:intergenic 35.0%
GACAACATTGTTTCAACTCA+CGG - chr8_3:35528178-35528197 Msa1286780:intron 35.0%
GAAACAAAAAATACGGCGAA+AGG + chr8_3:35528281-35528300 None:intergenic 35.0%
TTGAGGAATACAAAAACTCC+AGG - chr8_3:35528450-35528469 Msa1286780:intron 35.0%
AAAAACTCCAGGAAAGAAGT+TGG - chr8_3:35528461-35528480 Msa1286780:intron 35.0%
AGTTGGCCAGTTTCAAAATA+AGG - chr8_3:35528478-35528497 Msa1286780:intron 35.0%
GTTGGCCAGTTTCAAAATAA+GGG - chr8_3:35528479-35528498 Msa1286780:intron 35.0%
! TGATGATGAAAAGCCACAAA+AGG + chr8_3:35528678-35528697 None:intergenic 35.0%
ACAATCAAATCTGCCCACAT+AGG + chr8_3:35525770-35525789 None:intergenic 40.0%
! GGTTTTCCATTTTCGGTTCA+GGG - chr8_3:35525975-35525994 Msa1286780:intron 40.0%
GTAAAACCCTGAACCGAAAA+TGG + chr8_3:35525984-35526003 None:intergenic 40.0%
! AAAATTTGCTCACTCTGGTG+AGG - chr8_3:35526080-35526099 Msa1286780:intron 40.0%
CTTGATTTCGAGACTGAAGA+AGG + chr8_3:35526129-35526148 None:intergenic 40.0%
TCTTCAGTCTCGAAATCAAG+AGG - chr8_3:35526129-35526148 Msa1286780:intron 40.0%
AACTACAAGAATTGGGGGAA+AGG - chr8_3:35526162-35526181 Msa1286780:intron 40.0%
TAAACAGCAGGGTTTAAGCA+AGG - chr8_3:35526209-35526228 Msa1286780:intron 40.0%
AAACAGCAGGGTTTAAGCAA+GGG - chr8_3:35526210-35526229 Msa1286780:intron 40.0%
AAGGGAAGATGCTTGAAACA+AGG - chr8_3:35526228-35526247 Msa1286780:intron 40.0%
! AAGGCTAGTTGCAATCTTGT+TGG - chr8_3:35526372-35526391 Msa1286780:three_prime_UTR 40.0%
TGAAAGGTCTACAAGAAGCA+TGG - chr8_3:35526425-35526444 Msa1286780:exon 40.0%
! GGATTATAAGGGGCATAAGA+AGG - chr8_3:35526476-35526495 Msa1286780:CDS 40.0%
GGACCAGCATAAATATATGG+AGG - chr8_3:35526587-35526606 Msa1286780:intron 40.0%
TCAAAAGTGGAGATGGATGT+TGG - chr8_3:35526696-35526715 Msa1286780:intron 40.0%
! AGTTTGTTTCAAAGCAGCAG+AGG - chr8_3:35526799-35526818 Msa1286780:intron 40.0%
GTTTGTTTCAAAGCAGCAGA+GGG - chr8_3:35526800-35526819 Msa1286780:intron 40.0%
! AGCTGTAATGGAAGATGTCT+TGG + chr8_3:35526868-35526887 None:intergenic 40.0%
ACATCTTCCATTACAGCTGA+AGG - chr8_3:35526870-35526889 Msa1286780:intron 40.0%
TCCATTACAGCTGAAGGAAA+AGG - chr8_3:35526876-35526895 Msa1286780:intron 40.0%
! TCCTTTTCCTTCAGCTGTAA+TGG + chr8_3:35526880-35526899 None:intergenic 40.0%
ACAGCTGAAGGAAAAGGAAA+AGG - chr8_3:35526882-35526901 Msa1286780:intron 40.0%
ATGAGTTAGCAAATCTGGTC+CGG - chr8_3:35527025-35527044 Msa1286780:CDS 40.0%
! AATGCCTGTTTTATACGAGC+CGG + chr8_3:35527047-35527066 None:intergenic 40.0%
TATGTGCTTATCGAGAATGC+TGG - chr8_3:35527242-35527261 Msa1286780:CDS 40.0%
ATGTGCTTATCGAGAATGCT+GGG - chr8_3:35527243-35527262 Msa1286780:CDS 40.0%
! TGCTGGGTTTACATTTTCAC+AGG - chr8_3:35527259-35527278 Msa1286780:CDS 40.0%
TAAAAAGGAGGCCTTTGACA+AGG - chr8_3:35527352-35527371 Msa1286780:CDS 40.0%
AAAAAGGAGGCCTTTGACAA+GGG - chr8_3:35527353-35527372 Msa1286780:CDS 40.0%
CATTCTCTTTCCCTTGTCAA+AGG + chr8_3:35527366-35527385 None:intergenic 40.0%
!! ATGAAGAAGGTGTTCTTGCA+AGG - chr8_3:35527419-35527438 Msa1286780:CDS 40.0%
!! TGAAGAAGGTGTTCTTGCAA+GGG - chr8_3:35527420-35527439 Msa1286780:CDS 40.0%
CAACATAAGGATGACAAAGC+AGG - chr8_3:35527481-35527500 Msa1286780:CDS 40.0%
! ATCAGCAGCTTTGACAATAC+TGG - chr8_3:35527504-35527523 Msa1286780:CDS 40.0%
ACGTTCCTTGGAAAGTTTAC+AGG + chr8_3:35527735-35527754 None:intergenic 40.0%
AACACCTGTGTTGTCAATCA+CGG - chr8_3:35527990-35528009 Msa1286780:intron 40.0%
ACAGCAATGCTATAGTGTAG+TGG + chr8_3:35528140-35528159 None:intergenic 40.0%
CAGCTAGAAGGATTTACTTG+CGG - chr8_3:35528401-35528420 Msa1286780:intron 40.0%
GAAGGATTTACTTGCGGTAA+TGG - chr8_3:35528407-35528426 Msa1286780:intron 40.0%
TCAATGAGTCGTGTGATATC+AGG + chr8_3:35528514-35528533 None:intergenic 40.0%
ACTCTTGTATATAGGGTGAG+TGG - chr8_3:35528558-35528577 Msa1286780:CDS 40.0%
CTCTTGTATATAGGGTGAGT+GGG - chr8_3:35528559-35528578 Msa1286780:CDS 40.0%
AACAATCGTGTGCGAAACGA+CGG + chr8_3:35525158-35525177 None:intergenic 45.0%
CTTCTCAGAACTCGAATCGA+TGG + chr8_3:35525188-35525207 None:intergenic 45.0%
TTTCACAGTCCTCGTTGAGT+TGG - chr8_3:35525211-35525230 Msa1286780:three_prime_UTR 45.0%
CATGATTCTCCAACTCAACG+AGG + chr8_3:35525223-35525242 None:intergenic 45.0%
!! CTCGTTGAGTTGGAGAATCA+TGG - chr8_3:35525221-35525240 Msa1286780:three_prime_UTR 45.0%
ACGGCATCTTCATCGATCAT+TGG - chr8_3:35525259-35525278 Msa1286780:three_prime_UTR 45.0%
CGGCATCTTCATCGATCATT+GGG - chr8_3:35525260-35525279 Msa1286780:three_prime_UTR 45.0%
! CATCGATCATTGGGCTTTTC+TGG - chr8_3:35525269-35525288 Msa1286780:three_prime_UTR 45.0%
! GTTGCAGAACTGATGATGAC+TGG - chr8_3:35525907-35525926 Msa1286780:intron 45.0%
! GGGTTTTCCATTTTCGGTTC+AGG - chr8_3:35525974-35525993 Msa1286780:intron 45.0%
! CGGTTCAGGGTTTTACTGAA+TGG - chr8_3:35525988-35526007 Msa1286780:intron 45.0%
AGTAGAAGCCTCAAGAGTTC+AGG - chr8_3:35526566-35526585 Msa1286780:intron 45.0%
CAGTGAGTAGTACCAGTCTT+AGG - chr8_3:35526649-35526668 Msa1286780:intron 45.0%
! TCTTCTGGGAAGTCTAGTGT+TGG - chr8_3:35526747-35526766 Msa1286780:intron 45.0%
! CTTCTGGGAAGTCTAGTGTT+GGG - chr8_3:35526748-35526767 Msa1286780:intron 45.0%
GATAAGAACAGGTGCAATCC+TGG - chr8_3:35526834-35526853 Msa1286780:intron 45.0%
CTCTACCATCGGTAAAAAGG+AGG - chr8_3:35527340-35527359 Msa1286780:CDS 45.0%
! AAAGGCCTCCTTTTTACCGA+TGG + chr8_3:35527348-35527367 None:intergenic 45.0%
AAGGGAAAGAGAATGCTACC+AGG - chr8_3:35527371-35527390 Msa1286780:CDS 45.0%
!! GAAGAAGGTGTTCTTGCAAG+GGG - chr8_3:35527421-35527440 Msa1286780:CDS 45.0%
CAATCCGTGATTGACAACAC+AGG + chr8_3:35527997-35528016 None:intergenic 45.0%
GCTCTTTGGCAAATCTTCCA+AGG - chr8_3:35528304-35528323 Msa1286780:intron 45.0%
CAATGTGAGGCAAAGAAACC+AGG - chr8_3:35528373-35528392 Msa1286780:intron 45.0%
AACCAGGTAATCCAGCTAGA+AGG - chr8_3:35528389-35528408 Msa1286780:intron 45.0%
! ATCCTTCTAGCTGGATTACC+TGG + chr8_3:35528394-35528413 None:intergenic 45.0%
CGCAAGTAAATCCTTCTAGC+TGG + chr8_3:35528403-35528422 None:intergenic 45.0%
AAACTGGCCAACTTCTTTCC+TGG + chr8_3:35528471-35528490 None:intergenic 45.0%
TATAGGGTGAGTGGGTAGTA+TGG - chr8_3:35528567-35528586 Msa1286780:CDS 45.0%
ATCACCTAACATTGCAGGCT+GGG + chr8_3:35528600-35528619 None:intergenic 45.0%
TATCACCTAACATTGCAGGC+TGG + chr8_3:35528601-35528620 None:intergenic 45.0%
!! TTAAATTATAATTTAACAAA+AGG + chr8_3:35527699-35527718 None:intergenic 5.0%
!! TTGTTAAATTATAATTTAAA+AGG - chr8_3:35527700-35527719 Msa1286780:CDS 5.0%
CCAAAAGGGATTCTTACGGG+TGG + chr8_3:35525944-35525963 None:intergenic 50.0%
! CCACCCGTAAGAATCCCTTT+TGG - chr8_3:35525941-35525960 Msa1286780:intron 50.0%
ATTTGCTCACTCTGGTGAGG+AGG - chr8_3:35526083-35526102 Msa1286780:intron 50.0%
! GAGACTGAAGAAGGAAGTGC+CGG + chr8_3:35526120-35526139 None:intergenic 50.0%
ATGCTGGTCCTGAACTCTTG+AGG + chr8_3:35526577-35526596 None:intergenic 50.0%
AGGGGTCGTAAATCGTCTTC+TGG - chr8_3:35526732-35526751 Msa1286780:intron 50.0%
GGGGTCGTAAATCGTCTTCT+GGG - chr8_3:35526733-35526752 Msa1286780:intron 50.0%
! TGGTCCGGCTCGTATAAAAC+AGG - chr8_3:35527040-35527059 Msa1286780:CDS 50.0%
TCACCTAACATTGCAGGCTG+GGG + chr8_3:35528599-35528618 None:intergenic 50.0%
ACTCGCGAGCAGACAACTGA+TGG + chr8_3:35526053-35526072 None:intergenic 55.0%
! CTTCGACGTAGCTTTTCCCC+TGG + chr8_3:35526355-35526374 None:intergenic 55.0%
CAGGGGAAAAGCTACGTCGA+AGG - chr8_3:35526353-35526372 Msa1286780:three_prime_UTR 55.0%
TGACCCCAGCCTGCAATGTT+AGG - chr8_3:35528593-35528612 Msa1286780:exon 55.0%
TCACTCTGGTGAGGAGGCAG+TGG - chr8_3:35526089-35526108 Msa1286780:intron 60.0%
TGAGGAGGCAGTGGCGTCGC+CGG - chr8_3:35526098-35526117 Msa1286780:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 35525142 35528697 35525142 ID=Msa1286780;Name=Msa1286780
chr8_3 mRNA 35525142 35528697 35525142 ID=Msa1286780-mRNA-1;Parent=Msa1286780;Name=Msa1286780-mRNA-1;_AED=0.04;_eAED=0.04;_QI=98|1|1|1|0.8|0.66|6|465|389
chr8_3 exon 35525142 35525481 35525142 ID=Msa1286780-mRNA-1:exon:10458;Parent=Msa1286780-mRNA-1
chr8_3 exon 35526314 35526558 35526314 ID=Msa1286780-mRNA-1:exon:10457;Parent=Msa1286780-mRNA-1
chr8_3 exon 35526892 35527792 35526892 ID=Msa1286780-mRNA-1:exon:10456;Parent=Msa1286780-mRNA-1
chr8_3 exon 35527893 35527925 35527893 ID=Msa1286780-mRNA-1:exon:10455;Parent=Msa1286780-mRNA-1
chr8_3 exon 35528023 35528087 35528023 ID=Msa1286780-mRNA-1:exon:10454;Parent=Msa1286780-mRNA-1
chr8_3 exon 35528549 35528697 35528549 ID=Msa1286780-mRNA-1:exon:10453;Parent=Msa1286780-mRNA-1
chr8_3 five_prime_UTR 35528600 35528697 35528600 ID=Msa1286780-mRNA-1:five_prime_utr;Parent=Msa1286780-mRNA-1
chr8_3 CDS 35528549 35528599 35528549 ID=Msa1286780-mRNA-1:cds;Parent=Msa1286780-mRNA-1
chr8_3 CDS 35528023 35528087 35528023 ID=Msa1286780-mRNA-1:cds;Parent=Msa1286780-mRNA-1
chr8_3 CDS 35527893 35527925 35527893 ID=Msa1286780-mRNA-1:cds;Parent=Msa1286780-mRNA-1
chr8_3 CDS 35526892 35527792 35526892 ID=Msa1286780-mRNA-1:cds;Parent=Msa1286780-mRNA-1
chr8_3 CDS 35526439 35526558 35526439 ID=Msa1286780-mRNA-1:cds;Parent=Msa1286780-mRNA-1
chr8_3 three_prime_UTR 35526314 35526438 35526314 ID=Msa1286780-mRNA-1:three_prime_utr;Parent=Msa1286780-mRNA-1
chr8_3 three_prime_UTR 35525142 35525481 35525142 ID=Msa1286780-mRNA-1:three_prime_utr;Parent=Msa1286780-mRNA-1
Gene Sequence

>Msa1286780

ATGGAAGCTTCTAAGAAGAACGGCATCTTCATCGATCATTGGGCTTTTCTGGAACAATTTGAAGCACCTATGTGGGCAGATTTGATTGTTGAAGCTAACTCTGGTTATGAAAATATAACTGATGATGACTGGTTCAACGAAAGCCACCCGTTCCATCAGTTGTCTGCTCGCGAGTTAAAGTCAAAATTTGCTCACTCTGGTGAGGAGGCAGTGGCGTCGCCGGCACTTCCTTCTTCAGTCTCGAAATCAAGAGGAAAACACTACAACTACAAGAATTGGGGGAAAGGTATTAATCTGAATGTTTTGTTGGATAAACAGCAGGGTTTAAGCAAGGGAAGATGCTTGAAACAAGGTTCTAGTTTTGGTTATGAAGGGAAGGTCAAATCAACGTCAAATGTTAGCAGGACAAAAGGATTGATGAGTGAAAAATCGGGGTTGACTTTTGAACACAATACCAGGGGAAAAGCTACGTCGAAGGCTAGTTGCAATCTTGTTGGAAGTTCAAGTTCTATGGATAAAAAGAATTATGAAAGGTCTACAAGAAGCATGGTTACATCTGAGAGTATGATGCAAAAGAAGGATTATAAGGGGCATAAGAAGGTATCATGTGATGAGAAAAGCAAAAGTTCGTCAGTTAGAAGCGTTAGTTTTGGGAGAAGTGCGATTACAGTAGAAGCCTCAAGAGTTCAGGACCAGCATAAATATATGGAGGTGTCTAGTAAACAATGTGATCAGAAAAGTAGAAGTTCATCAGTGAGTAGTACCAGTCTTAGGAAAAGTCATGTAACACCAAAAGTCTCAAAAGTGGAGATGGATGTTGGTAACATGAAGTTTAGGGGTCGTAAATCGTCTTCTGGGAAGTCTAGTGTTGGGTCATGTTCAAATCCTAGTTATGAAGCTAAGTTTGTTTCAAAGCAGCAGAGGGCGAAAATCACAGATAAGAACAGGTGCAATCCTGGTAATAAATCCAAGACATCTTCCATTACAGCTGAAGGAAAAGGAAAAGGAATAATAATAGGAGGAAGTAACATCAATGTTGCAAAGTCATTGGTCAAAAGTCAATCTGTAAGTTCAAGTACAATGTTACAGGGAAAAGTCAACAAAAAAAACTCTACCATCGGTAAAAAGGAGGCCTTTGACAAGGGAAAGAGAATGCTACCAGGAAATTGA

Protein sequence

>Msa1286780

MEASKKNGIFIDHWAFLEQFEAPMWADLIVEANSGYENITDDDWFNESHPFHQLSARELKSKFAHSGEEAVASPALPSSVSKSRGKHYNYKNWGKGINLNVLLDKQQGLSKGRCLKQGSSFGYEGKVKSTSNVSRTKGLMSEKSGLTFEHNTRGKATSKASCNLVGSSSSMDKKNYERSTRSMVTSESMMQKKDYKGHKKVSCDEKSKSSSVRSVSFGRSAITVEASRVQDQHKYMEVSSKQCDQKSRSSSVSSTSLRKSHVTPKVSKVEMDVGNMKFRGRKSSSGKSSVGSCSNPSYEAKFVSKQQRAKITDKNRCNPGNKSKTSSITAEGKGKGIIIGGSNINVAKSLVKSQSVSSSTMLQGKVNKKNSTIGKKEAFDKGKRMLPGN*