Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1290330 | XP_003628658.1 | 91.279 | 172 | 11 | 1 | 1 | 168 | 1 | 172 | 6.41e-96 | 285 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1290330 | sp|Q9XIK0|PRIN2_ARATH | 61.585 | 164 | 56 | 2 | 4 | 165 | 21 | 179 | 1.26e-67 | 206 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1290330 | G7LFF5 | 91.279 | 172 | 11 | 1 | 1 | 168 | 1 | 172 | 3.06e-96 | 285 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1290330 | Msa1290390 | 0.966016 | 2.318825e-125 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1290330 | MtrunA17_Chr8g0364551 | 91.279 | 172 | 11 | 1 | 1 | 168 | 1 | 172 | 5.90e-100 | 285 |
| Msa1290330 | MtrunA17_Chr8g0364581 | 52.294 | 109 | 49 | 1 | 56 | 161 | 69 | 177 | 5.28e-36 | 123 |
| Msa1290330 | MtrunA17_Chr2g0329721 | 97.619 | 42 | 1 | 0 | 127 | 168 | 1 | 42 | 8.89e-27 | 95.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1290330 | AT1G10522.1 | 61.585 | 164 | 56 | 2 | 4 | 165 | 21 | 179 | 1.29e-68 | 206 |
| Msa1290330 | AT1G10522.2 | 61.585 | 164 | 56 | 2 | 4 | 165 | 21 | 179 | 1.29e-68 | 206 |
Find 47 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATTTAATAAAAGAGTTT+TGG | 0.257218 | 8_3:-45071784 | Msa1290330:five_prime_UTR |
| TACAACGAGAGACACTTTAT+TGG | 0.303926 | 8_3:+45069527 | None:intergenic |
| ACATTCTTACATTCCGAGTA+TGG | 0.321377 | 8_3:-45069709 | Msa1290330:CDS |
| AACATAGTGCTCGAAGTATT+TGG | 0.324970 | 8_3:-45069340 | Msa1290330:three_prime_UTR |
| GTGACCTTTCTGTTTATAGA+AGG | 0.338363 | 8_3:+45071616 | None:intergenic |
| GAATCAGCAAATTCAGGAAT+TGG | 0.339820 | 8_3:+45071529 | None:intergenic |
| TTTGCATTTGGTAGTGGTTT+GGG | 0.340802 | 8_3:+45071654 | None:intergenic |
| CTTACGGAATCAGCAAATTC+AGG | 0.365594 | 8_3:+45071523 | None:intergenic |
| CTGCGCGTACTGCTATCAAT+TGG | 0.368089 | 8_3:-45069603 | Msa1290330:CDS |
| TGAGAAACGTTGTTTGCATT+TGG | 0.378977 | 8_3:+45071642 | None:intergenic |
| GTTTGCATTTGGTAGTGGTT+TGG | 0.391225 | 8_3:+45071653 | None:intergenic |
| GAATCAGTTGAAGAAGTTGT+TGG | 0.395209 | 8_3:-45071366 | Msa1290330:CDS |
| GAGATAAAGCACTGCAAACT+TGG | 0.406820 | 8_3:-45071751 | Msa1290330:five_prime_UTR |
| GTCCTTGTCAACATGAGCTT+GGG | 0.422109 | 8_3:+45069579 | None:intergenic |
| AGTCCTTGTCAACATGAGCT+TGG | 0.433254 | 8_3:+45069578 | None:intergenic |
| GCAAATTCAGGAATTGGGTC+AGG | 0.441374 | 8_3:+45071535 | None:intergenic |
| CGCGCAGCTTGCGGTCCTCC+GGG | 0.457523 | 8_3:+45069619 | None:intergenic |
| GGTTGATCCTTTCATTGACA+TGG | 0.470497 | 8_3:-45069668 | Msa1290330:CDS |
| AATCAGCAAATTCAGGAATT+GGG | 0.480457 | 8_3:+45071530 | None:intergenic |
| TTAGTTTAGAATGATCGTAT+AGG | 0.484681 | 8_3:-45069408 | Msa1290330:three_prime_UTR |
| AAGCTCATGTTGACAAGGAC+TGG | 0.489002 | 8_3:-45069576 | Msa1290330:CDS |
| TGGAGGTCCTGGTACACTCT+TGG | 0.495600 | 8_3:-45069689 | Msa1290330:CDS |
| ACGTTGTTTGCATTTGGTAG+TGG | 0.495989 | 8_3:+45071648 | None:intergenic |
| TGCGCGTACTGCTATCAATT+GGG | 0.498467 | 8_3:-45069602 | Msa1290330:CDS |
| TATACGATCATTCTAAACTA+AGG | 0.500005 | 8_3:+45069410 | None:intergenic |
| GTATTCAGCAGCTCTAGTAA+TGG | 0.517459 | 8_3:+45071564 | None:intergenic |
| ATTTCCTTCTATAAACAGAA+AGG | 0.520411 | 8_3:-45071620 | Msa1290330:CDS |
| AACGAGAGATGGTACAAGAC+AGG | 0.524717 | 8_3:+45071702 | None:intergenic |
| AAGCATAGCGAAGGAATTGA+AGG | 0.524928 | 8_3:+45071679 | None:intergenic |
| GCTGATATTGTAAACGAAAG+AGG | 0.526912 | 8_3:-45069646 | Msa1290330:CDS |
| GGATCAACCAAGAGTGTACC+AGG | 0.536497 | 8_3:+45069682 | None:intergenic |
| TTGAAAGCTTATTGAGAAGG+TGG | 0.544406 | 8_3:+45071406 | None:intergenic |
| TTGACAAGGACTGGAATGAA+TGG | 0.551690 | 8_3:-45069567 | Msa1290330:CDS |
| TCTTTGAAAGCTTATTGAGA+AGG | 0.554547 | 8_3:+45071403 | None:intergenic |
| GGAATTGAAGGAACGAGAGA+TGG | 0.571262 | 8_3:+45071691 | None:intergenic |
| GTAAACGAAAGAGGATTGCC+CGG | 0.573161 | 8_3:-45069637 | Msa1290330:CDS |
| TGTACCAGGACCTCCATACT+CGG | 0.582407 | 8_3:+45069696 | None:intergenic |
| ATATCAGCCATGTCAATGAA+AGG | 0.593374 | 8_3:+45069661 | None:intergenic |
| ATAGCAGTACGCGCAGCTTG+CGG | 0.618963 | 8_3:+45069610 | None:intergenic |
| CAAATTCAGGAATTGGGTCA+GGG | 0.622665 | 8_3:+45071536 | None:intergenic |
| GGCCCAAGCTCATGTTGACA+AGG | 0.624353 | 8_3:-45069581 | Msa1290330:CDS |
| TTCTTACATTCCGAGTATGG+AGG | 0.636703 | 8_3:-45069706 | Msa1290330:CDS |
| GACTGGAATGAATGGACAGG+TGG | 0.643824 | 8_3:-45069559 | Msa1290330:CDS |
| AAGGACTGGAATGAATGGAC+AGG | 0.650369 | 8_3:-45069562 | Msa1290330:CDS |
| GTTTGGGAGAAGCATAGCGA+AGG | 0.664504 | 8_3:+45071670 | None:intergenic |
| AACGAAAGAGGATTGCCCGG+AGG | 0.743283 | 8_3:-45069634 | Msa1290330:CDS |
| AGTTGTTGGAGTTTGCACTG+AGG | 0.786173 | 8_3:-45071352 | Msa1290330:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTTAATAAAAGAGTTT+TGG | - | chr8_3:45069315-45069334 | Msa1290330:three_prime_UTR | 10.0% |
| !!! | CTATAATTTAAAATTAGTTT+TGG | - | chr8_3:45070170-45070189 | Msa1290330:intron | 10.0% |
| !!! | TTTTCACAAAAATAAAAAGT+GGG | + | chr8_3:45069624-45069643 | None:intergenic | 15.0% |
| !!! | ATTTTCACAAAAATAAAAAG+TGG | + | chr8_3:45069625-45069644 | None:intergenic | 15.0% |
| !!! | ATAAATAATCTTTTTGTTTG+TGG | - | chr8_3:45069643-45069662 | Msa1290330:CDS | 15.0% |
| !!! | TAAATAATCTTTTTGTTTGT+GGG | - | chr8_3:45069644-45069663 | Msa1290330:CDS | 15.0% |
| !! | TTTGTAATTTCAATACATTT+AGG | - | chr8_3:45070127-45070146 | Msa1290330:intron | 15.0% |
| !! | AAAAAAAGAGAGAAAACTTA+CGG | + | chr8_3:45069595-45069614 | None:intergenic | 20.0% |
| !!! | TATTTTCGTAATTTTGATAC+AGG | + | chr8_3:45069982-45070001 | None:intergenic | 20.0% |
| !! | AATTGAGTATATAACTGTTT+CGG | - | chr8_3:45070268-45070287 | Msa1290330:intron | 20.0% |
| !!! | TATATCTATTCTCTTTTTCT+TGG | - | chr8_3:45070847-45070866 | Msa1290330:intron | 20.0% |
| !! | ACAACACTTTGTATAAAAAT+AGG | + | chr8_3:45070888-45070907 | None:intergenic | 20.0% |
| !!! | CAAACTTGGTTTTTAAAGAA+TGG | - | chr8_3:45069362-45069381 | Msa1290330:three_prime_UTR | 25.0% |
| ! | ATTTCCTTCTATAAACAGAA+AGG | - | chr8_3:45069479-45069498 | Msa1290330:three_prime_UTR | 25.0% |
| !!! | CTTTGTTTTACTAGCTAATT+TGG | - | chr8_3:45069797-45069816 | Msa1290330:intron | 25.0% |
| !!! | ATGTATTTTGTTTGCCATTT+TGG | - | chr8_3:45070011-45070030 | Msa1290330:intron | 25.0% |
| ! | TTCATCAAAGTTATAGAAAG+GGG | + | chr8_3:45070219-45070238 | None:intergenic | 25.0% |
| ! | GTTCATCAAAGTTATAGAAA+GGG | + | chr8_3:45070220-45070239 | None:intergenic | 25.0% |
| ! | TGTTCATCAAAGTTATAGAA+AGG | + | chr8_3:45070221-45070240 | None:intergenic | 25.0% |
| ! | TCTATAACTTTGATGAACAT+AGG | - | chr8_3:45070222-45070241 | Msa1290330:intron | 25.0% |
| ! | CTATAACTTTGATGAACATA+GGG | - | chr8_3:45070223-45070242 | Msa1290330:intron | 25.0% |
| ! | TATGCAACAACATTCAATAA+AGG | + | chr8_3:45070351-45070370 | None:intergenic | 25.0% |
| ! | AAAATCATAAGCACAAATGT+AGG | + | chr8_3:45070386-45070405 | None:intergenic | 25.0% |
| ! | AACTAGGAGTTAAAAATAGT+AGG | - | chr8_3:45070745-45070764 | Msa1290330:intron | 25.0% |
| ! | ACACTTTGTATAAAAATAGG+AGG | + | chr8_3:45070885-45070904 | None:intergenic | 25.0% |
| !! | TAGTACACCTAAACTATTTT+TGG | - | chr8_3:45071279-45071298 | Msa1290330:intron | 25.0% |
| ! | TATACGATCATTCTAAACTA+AGG | + | chr8_3:45071692-45071711 | None:intergenic | 25.0% |
| !! | TTAGTTTAGAATGATCGTAT+AGG | - | chr8_3:45071691-45071710 | Msa1290330:CDS | 25.0% |
| AATCAGCAAATTCAGGAATT+GGG | + | chr8_3:45069572-45069591 | None:intergenic | 30.0% | |
| ! | TCTTTGAAAGCTTATTGAGA+AGG | + | chr8_3:45069699-45069718 | None:intergenic | 30.0% |
| AACAACTACTAGCATATTGA+AGG | + | chr8_3:45069959-45069978 | None:intergenic | 30.0% | |
| TTCAATACATTTAGGAACCA+TGG | - | chr8_3:45070135-45070154 | Msa1290330:intron | 30.0% | |
| TATAGAGTAAACAACTACCA+TGG | + | chr8_3:45070155-45070174 | None:intergenic | 30.0% | |
| GGAAAGATGTCATATTTGAA+GGG | - | chr8_3:45070192-45070211 | Msa1290330:intron | 30.0% | |
| TCATCAAAGTTATAGAAAGG+GGG | + | chr8_3:45070218-45070237 | None:intergenic | 30.0% | |
| ! | CCTATAGATTTTGCTAATAC+AGG | + | chr8_3:45070531-45070550 | None:intergenic | 30.0% |
| CCTGTATTAGCAAAATCTAT+AGG | - | chr8_3:45070528-45070547 | Msa1290330:intron | 30.0% | |
| CTAGTTGCATATATTCAACT+TGG | + | chr8_3:45070731-45070750 | None:intergenic | 30.0% | |
| ! | CAAGTTGAATATATGCAACT+AGG | - | chr8_3:45070729-45070748 | Msa1290330:intron | 30.0% |
| CAACCAAGAAAAAGAGAATA+GGG | - | chr8_3:45070777-45070796 | Msa1290330:intron | 30.0% | |
| ! | ATTCCCTATTCTCTTTTTCT+TGG | + | chr8_3:45070783-45070802 | None:intergenic | 30.0% |
| TTGCAAAATTTGATCAACCA+GGG | - | chr8_3:45070945-45070964 | Msa1290330:intron | 30.0% | |
| ACTAAGTGCTTTCTTCTATA+TGG | - | chr8_3:45071249-45071268 | Msa1290330:intron | 30.0% | |
| TGAAGCTCCAAAAATAGTTT+AGG | + | chr8_3:45071289-45071308 | None:intergenic | 30.0% | |
| !!! | AAAGAGTTTTGGAGTTAGCT+AGG | - | chr8_3:45069326-45069345 | Msa1290330:three_prime_UTR | 35.0% |
| !! | TTTGCATTTGGTAGTGGTTT+GGG | + | chr8_3:45069448-45069467 | None:intergenic | 35.0% |
| TGAGAAACGTTGTTTGCATT+TGG | + | chr8_3:45069460-45069479 | None:intergenic | 35.0% | |
| GTGACCTTTCTGTTTATAGA+AGG | + | chr8_3:45069486-45069505 | None:intergenic | 35.0% | |
| GAATCAGCAAATTCAGGAAT+TGG | + | chr8_3:45069573-45069592 | None:intergenic | 35.0% | |
| !! | TCTTTTTGTTTGTGGGTTTC+AGG | - | chr8_3:45069651-45069670 | Msa1290330:CDS | 35.0% |
| TTGAAAGCTTATTGAGAAGG+TGG | + | chr8_3:45069696-45069715 | None:intergenic | 35.0% | |
| GAATCAGTTGAAGAAGTTGT+TGG | - | chr8_3:45069733-45069752 | Msa1290330:intron | 35.0% | |
| !! | TAGTGAGCTTACTGTCATTT+TGG | - | chr8_3:45069932-45069951 | Msa1290330:intron | 35.0% |
| AACACTCACGATAACCAAAA+TGG | + | chr8_3:45070028-45070047 | None:intergenic | 35.0% | |
| !!! | AGTGTTTTGATCTTCGAAGT+TGG | - | chr8_3:45070042-45070061 | Msa1290330:intron | 35.0% |
| GGGAAAGATGTCATATTTGA+AGG | - | chr8_3:45070191-45070210 | Msa1290330:intron | 35.0% | |
| CCAACAATTAAAGTGTAGCA+TGG | + | chr8_3:45070296-45070315 | None:intergenic | 35.0% | |
| CCATGCTACACTTTAATTGT+TGG | - | chr8_3:45070293-45070312 | Msa1290330:intron | 35.0% | |
| ATAGACTGATCTTAACCTGA+AGG | + | chr8_3:45070463-45070482 | None:intergenic | 35.0% | |
| GCAACCAAGAAAAAGAGAAT+AGG | - | chr8_3:45070776-45070795 | Msa1290330:intron | 35.0% | |
| TAGGGAATGAAGAAGAAGAT+AGG | - | chr8_3:45070795-45070814 | Msa1290330:intron | 35.0% | |
| TTGTCAAATAGCAGTTACAG+TGG | - | chr8_3:45070904-45070923 | Msa1290330:intron | 35.0% | |
| GTTGCAAAATTTGATCAACC+AGG | - | chr8_3:45070944-45070963 | Msa1290330:intron | 35.0% | |
| ATGTTGTCAAATAGACGCTA+TGG | - | chr8_3:45071052-45071071 | Msa1290330:intron | 35.0% | |
| !! | ATTTTAGCACTGTAGTGTAG+CGG | - | chr8_3:45071079-45071098 | Msa1290330:intron | 35.0% |
| ATCATAATCACAGAATCCAC+AGG | + | chr8_3:45071349-45071368 | None:intergenic | 35.0% | |
| ACATTCTTACATTCCGAGTA+TGG | - | chr8_3:45071390-45071409 | Msa1290330:CDS | 35.0% | |
| ATATCAGCCATGTCAATGAA+AGG | + | chr8_3:45071441-45071460 | None:intergenic | 35.0% | |
| GCTGATATTGTAAACGAAAG+AGG | - | chr8_3:45071453-45071472 | Msa1290330:intron | 35.0% | |
| TACAACGAGAGACACTTTAT+TGG | + | chr8_3:45071575-45071594 | None:intergenic | 35.0% | |
| ! | AACATAGTGCTCGAAGTATT+TGG | - | chr8_3:45071759-45071778 | Msa1290330:five_prime_UTR | 35.0% |
| !! | GAGATAAAGCACTGCAAACT+TGG | - | chr8_3:45069348-45069367 | Msa1290330:three_prime_UTR | 40.0% |
| AAGCATAGCGAAGGAATTGA+AGG | + | chr8_3:45069423-45069442 | None:intergenic | 40.0% | |
| !! | GTTTGCATTTGGTAGTGGTT+TGG | + | chr8_3:45069449-45069468 | None:intergenic | 40.0% |
| ACGTTGTTTGCATTTGGTAG+TGG | + | chr8_3:45069454-45069473 | None:intergenic | 40.0% | |
| ! | GAGCGTTTTGTGGATGAAAA+GGG | + | chr8_3:45069516-45069535 | None:intergenic | 40.0% |
| !! | TCTAGTAATGGAGCGTTTTG+TGG | + | chr8_3:45069526-45069545 | None:intergenic | 40.0% |
| ! | GTATTCAGCAGCTCTAGTAA+TGG | + | chr8_3:45069538-45069557 | None:intergenic | 40.0% |
| CAAATTCAGGAATTGGGTCA+GGG | + | chr8_3:45069566-45069585 | None:intergenic | 40.0% | |
| CTTACGGAATCAGCAAATTC+AGG | + | chr8_3:45069579-45069598 | None:intergenic | 40.0% | |
| GGGAGTGAGCATAAGATTAA+TGG | - | chr8_3:45070243-45070262 | Msa1290330:intron | 40.0% | |
| !! | CATTCTTTTTCACCTTGCTC+TGG | - | chr8_3:45070316-45070335 | Msa1290330:intron | 40.0% |
| ! | TGAGAGTTGTTGTTACCTTC+AGG | - | chr8_3:45070445-45070464 | Msa1290330:intron | 40.0% |
| CATCCCACTCAACGTAATAT+GGG | + | chr8_3:45070577-45070596 | None:intergenic | 40.0% | |
| TCATCCCACTCAACGTAATA+TGG | + | chr8_3:45070578-45070597 | None:intergenic | 40.0% | |
| TAGCAACTATTTGACATCCC+TGG | + | chr8_3:45070965-45070984 | None:intergenic | 40.0% | |
| CAACATGTGGTACTACATAG+CGG | + | chr8_3:45071038-45071057 | None:intergenic | 40.0% | |
| AGCGTCTATTTGACAACATG+TGG | + | chr8_3:45071051-45071070 | None:intergenic | 40.0% | |
| TTGTCAAATAGACGCTATGG+TGG | - | chr8_3:45071055-45071074 | Msa1290330:intron | 40.0% | |
| CACAGGAAACAAGGTAAGTA+TGG | + | chr8_3:45071332-45071351 | None:intergenic | 40.0% | |
| ! | CATACTTACCTTGTTTCCTG+TGG | - | chr8_3:45071330-45071349 | Msa1290330:intron | 40.0% |
| TTCTTACATTCCGAGTATGG+AGG | - | chr8_3:45071393-45071412 | Msa1290330:CDS | 40.0% | |
| GGTTGATCCTTTCATTGACA+TGG | - | chr8_3:45071431-45071450 | Msa1290330:intron | 40.0% | |
| TTGACAAGGACTGGAATGAA+TGG | - | chr8_3:45071532-45071551 | Msa1290330:CDS | 40.0% | |
| AACGAGAGATGGTACAAGAC+AGG | + | chr8_3:45069400-45069419 | None:intergenic | 45.0% | |
| GGAATTGAAGGAACGAGAGA+TGG | + | chr8_3:45069411-45069430 | None:intergenic | 45.0% | |
| !! | GGAGCGTTTTGTGGATGAAA+AGG | + | chr8_3:45069517-45069536 | None:intergenic | 45.0% |
| GCAAATTCAGGAATTGGGTC+AGG | + | chr8_3:45069567-45069586 | None:intergenic | 45.0% | |
| TGTTTGTGGGTTTCAGGAGA+CGG | - | chr8_3:45069657-45069676 | Msa1290330:CDS | 45.0% | |
| AGTTGTTGGAGTTTGCACTG+AGG | - | chr8_3:45069747-45069766 | Msa1290330:intron | 45.0% | |
| AGGTGAACATATCCAGAGCA+AGG | + | chr8_3:45070331-45070350 | None:intergenic | 45.0% | |
| AGCACCCATATTACGTTGAG+TGG | - | chr8_3:45070570-45070589 | Msa1290330:intron | 45.0% | |
| GCACCCATATTACGTTGAGT+GGG | - | chr8_3:45070571-45070590 | Msa1290330:intron | 45.0% | |
| GTTGAGTGGGATGACCAAAT+AGG | - | chr8_3:45070584-45070603 | Msa1290330:intron | 45.0% | |
| GTGGGATGACCAAATAGGAT+TGG | - | chr8_3:45070589-45070608 | Msa1290330:intron | 45.0% | |
| CAGACACAGCCAATCCTATT+TGG | + | chr8_3:45070601-45070620 | None:intergenic | 45.0% | |
| GTGTTGTCAATCACAGATCG+CGG | + | chr8_3:45071127-45071146 | None:intergenic | 45.0% | |
| !! | CAACCAAAGGTAGTGGAGAA+AGG | + | chr8_3:45071203-45071222 | None:intergenic | 45.0% |
| CTTTCTCCACTACCTTTGGT+TGG | - | chr8_3:45071201-45071220 | Msa1290330:intron | 45.0% | |
| AGTCATTGCATGCCAACCAA+AGG | + | chr8_3:45071216-45071235 | None:intergenic | 45.0% | |
| CACAGAATCCACAGGAAACA+AGG | + | chr8_3:45071341-45071360 | None:intergenic | 45.0% | |
| GTAAACGAAAGAGGATTGCC+CGG | - | chr8_3:45071462-45071481 | Msa1290330:intron | 45.0% | |
| TGCGCGTACTGCTATCAATT+GGG | - | chr8_3:45071497-45071516 | Msa1290330:intron | 45.0% | |
| GTCCTTGTCAACATGAGCTT+GGG | + | chr8_3:45071523-45071542 | None:intergenic | 45.0% | |
| AGTCCTTGTCAACATGAGCT+TGG | + | chr8_3:45071524-45071543 | None:intergenic | 45.0% | |
| AAGCTCATGTTGACAAGGAC+TGG | - | chr8_3:45071523-45071542 | Msa1290330:intron | 45.0% | |
| AAGGACTGGAATGAATGGAC+AGG | - | chr8_3:45071537-45071556 | Msa1290330:CDS | 45.0% | |
| !!! | TATAATTTAAAATTAGTTTT+GGG | - | chr8_3:45070171-45070190 | Msa1290330:intron | 5.0% |
| ! | GTTTGGGAGAAGCATAGCGA+AGG | + | chr8_3:45069432-45069451 | None:intergenic | 50.0% |
| GTTGGAGTTTGCACTGAGGT+TGG | - | chr8_3:45069751-45069770 | Msa1290330:intron | 50.0% | |
| TCACAGATCGCGGAAGATAG+CGG | + | chr8_3:45071117-45071136 | None:intergenic | 50.0% | |
| CAGCCTTTCTCCACTACCTT+TGG | - | chr8_3:45071197-45071216 | Msa1290330:intron | 50.0% | |
| TGCATGCCAACCAAAGGTAG+TGG | + | chr8_3:45071210-45071229 | None:intergenic | 50.0% | |
| TGTACCAGGACCTCCATACT+CGG | + | chr8_3:45071406-45071425 | None:intergenic | 50.0% | |
| ! | GGATCAACCAAGAGTGTACC+AGG | + | chr8_3:45071420-45071439 | None:intergenic | 50.0% |
| CTGCGCGTACTGCTATCAAT+TGG | - | chr8_3:45071496-45071515 | Msa1290330:intron | 50.0% | |
| GACTGGAATGAATGGACAGG+TGG | - | chr8_3:45071540-45071559 | Msa1290330:CDS | 50.0% | |
| ! | GATCGCGGAAGATAGCGGTT+TGG | + | chr8_3:45071112-45071131 | None:intergenic | 55.0% |
| CATTCCGAGTATGGAGGTCC+TGG | - | chr8_3:45071399-45071418 | Msa1290330:CDS | 55.0% | |
| TGGAGGTCCTGGTACACTCT+TGG | - | chr8_3:45071410-45071429 | Msa1290330:CDS | 55.0% | |
| AACGAAAGAGGATTGCCCGG+AGG | - | chr8_3:45071465-45071484 | Msa1290330:intron | 55.0% | |
| ATAGCAGTACGCGCAGCTTG+CGG | + | chr8_3:45071492-45071511 | None:intergenic | 55.0% | |
| GGCCCAAGCTCATGTTGACA+AGG | - | chr8_3:45071518-45071537 | Msa1290330:intron | 55.0% | |
| ACGCGCAGCTTGCGGTCCTC+CGG | + | chr8_3:45071484-45071503 | None:intergenic | 70.0% | |
| CGCGCAGCTTGCGGTCCTCC+GGG | + | chr8_3:45071483-45071502 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 45069308 | 45071813 | 45069308 | ID=Msa1290330;Name=Msa1290330 |
| chr8_3 | mRNA | 45069308 | 45071813 | 45069308 | ID=Msa1290330-mRNA-1;Parent=Msa1290330;Name=Msa1290330-mRNA-1;_AED=0.01;_eAED=0.01;_QI=73|1|1|1|1|1|3|235|168 |
| chr8_3 | exon | 45069308 | 45069740 | 45069308 | ID=Msa1290330-mRNA-1:exon:12421;Parent=Msa1290330-mRNA-1 |
| chr8_3 | exon | 45071353 | 45071448 | 45071353 | ID=Msa1290330-mRNA-1:exon:12420;Parent=Msa1290330-mRNA-1 |
| chr8_3 | exon | 45071528 | 45071813 | 45071528 | ID=Msa1290330-mRNA-1:exon:12419;Parent=Msa1290330-mRNA-1 |
| chr8_3 | five_prime_UTR | 45071741 | 45071813 | 45071741 | ID=Msa1290330-mRNA-1:five_prime_utr;Parent=Msa1290330-mRNA-1 |
| chr8_3 | CDS | 45071528 | 45071740 | 45071528 | ID=Msa1290330-mRNA-1:cds;Parent=Msa1290330-mRNA-1 |
| chr8_3 | CDS | 45071353 | 45071448 | 45071353 | ID=Msa1290330-mRNA-1:cds;Parent=Msa1290330-mRNA-1 |
| chr8_3 | CDS | 45069543 | 45069740 | 45069543 | ID=Msa1290330-mRNA-1:cds;Parent=Msa1290330-mRNA-1 |
| chr8_3 | three_prime_UTR | 45069308 | 45069542 | 45069308 | ID=Msa1290330-mRNA-1:three_prime_utr;Parent=Msa1290330-mRNA-1 |
| Gene Sequence |
| Protein sequence |
