Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1290390 | sp|Q9XIK0|PRIN2_ARATH | 44.444 | 171 | 74 | 4 | 7 | 171 | 24 | 179 | 2.45e-35 | 124 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1290390 | G7LFF5 | 69.832 | 179 | 42 | 4 | 1 | 174 | 1 | 172 | 5.91e-70 | 219 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1280120 | Msa1290390 | 0.803875 | 2.829248e-49 | -8.615850e-47 |
| Msa1290330 | Msa1290390 | 0.966016 | 2.318825e-125 | -8.615850e-47 |
| Msa0437710 | Msa1290390 | 0.802053 | 6.731733e-49 | -8.615850e-47 |
| Msa0509970 | Msa1290390 | 0.807663 | 4.528275e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1290390 | MtrunA17_Chr8g0364551 | 69.832 | 179 | 42 | 4 | 1 | 174 | 1 | 172 | 1.14e-73 | 219 |
| Msa1290390 | MtrunA17_Chr2g0329721 | 97.619 | 42 | 1 | 0 | 133 | 174 | 1 | 42 | 3.42e-28 | 99.4 |
| Msa1290390 | MtrunA17_Chr8g0364581 | 44.660 | 103 | 49 | 3 | 70 | 167 | 78 | 177 | 4.48e-22 | 87.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1290390 | AT1G10522.1 | 44.444 | 171 | 74 | 4 | 7 | 171 | 24 | 179 | 2.50e-36 | 124 |
| Msa1290390 | AT1G10522.2 | 44.444 | 171 | 74 | 4 | 7 | 171 | 24 | 179 | 2.50e-36 | 124 |
Find 46 sgRNAs with CRISPR-Local
Find 134 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAATTTAATAAAAGAGTTT+TGG | 0.257218 | 8_3:-45119535 | Msa1290390:five_prime_UTR |
| TACAACGAGAGACACTTTAT+TGG | 0.303926 | 8_3:+45117287 | None:intergenic |
| ACATTCTTACATTCCGAGTA+TGG | 0.321377 | 8_3:-45117469 | Msa1290390:CDS |
| AACATAGTGCTCGAAGTATT+TGG | 0.324970 | 8_3:-45117100 | Msa1290390:three_prime_UTR |
| GTGACCTTTCTGTTTATAGA+AGG | 0.338363 | 8_3:+45119367 | None:intergenic |
| GAATCAGCAAATTCAGGAAT+TGG | 0.339820 | 8_3:+45119281 | None:intergenic |
| TTTGCATTTGGTAGTGGTTT+GGG | 0.340802 | 8_3:+45119405 | None:intergenic |
| CTTACGGAATCAGCAAATTC+AGG | 0.365594 | 8_3:+45119275 | None:intergenic |
| CTGCGCGTACTGCTATCAAT+TGG | 0.368089 | 8_3:-45117363 | Msa1290390:CDS |
| TGAGAAACGTTGTTTGCATT+TGG | 0.378977 | 8_3:+45119393 | None:intergenic |
| GTTTGCATTTGGTAGTGGTT+TGG | 0.391225 | 8_3:+45119404 | None:intergenic |
| GAATCAGTTGAAGAAGTTGT+TGG | 0.395209 | 8_3:-45119118 | Msa1290390:CDS |
| GAGATAAAGCACTGCAAACT+TGG | 0.406820 | 8_3:-45119502 | Msa1290390:five_prime_UTR |
| GTCCTTGTCAACATGAGCTT+GGG | 0.422109 | 8_3:+45117339 | None:intergenic |
| AGTCCTTGTCAACATGAGCT+TGG | 0.433254 | 8_3:+45117338 | None:intergenic |
| CGCGCAGCTTGCGGTCCTCC+GGG | 0.457523 | 8_3:+45117379 | None:intergenic |
| GGTTGATCCTTTCATTGACA+TGG | 0.470497 | 8_3:-45117428 | Msa1290390:CDS |
| AATCAGCAAATTCAGGAATT+GGG | 0.480457 | 8_3:+45119282 | None:intergenic |
| TTAGTTTAGAATGATCGTAT+AGG | 0.484681 | 8_3:-45117168 | Msa1290390:three_prime_UTR |
| AAGCTCATGTTGACAAGGAC+TGG | 0.489002 | 8_3:-45117336 | Msa1290390:CDS |
| TGGAGGTCCTGGTACACTCT+TGG | 0.495600 | 8_3:-45117449 | Msa1290390:CDS |
| ACGTTGTTTGCATTTGGTAG+TGG | 0.495989 | 8_3:+45119399 | None:intergenic |
| TGCGCGTACTGCTATCAATT+GGG | 0.498467 | 8_3:-45117362 | Msa1290390:CDS |
| TATACGATCATTCTAAACTA+AGG | 0.500005 | 8_3:+45117170 | None:intergenic |
| GCAAATTCAGGAATTGGGTC+AGG | 0.504448 | 8_3:+45119287 | None:intergenic |
| GTATTCAGCAGCTCTAGTAA+TGG | 0.517459 | 8_3:+45119315 | None:intergenic |
| ATTTCCTTCTATAAACAGAA+AGG | 0.520411 | 8_3:-45119371 | Msa1290390:CDS |
| AACGAGAGATGGTACAAGAC+AGG | 0.524717 | 8_3:+45119453 | None:intergenic |
| AAGCATAGCGAAGGAATTGA+AGG | 0.524928 | 8_3:+45119430 | None:intergenic |
| GCTGATATTGTAAACGAAAG+AGG | 0.526912 | 8_3:-45117406 | Msa1290390:CDS |
| GGATCAACCAAGAGTGTACC+AGG | 0.536497 | 8_3:+45117442 | None:intergenic |
| TTGAAAGCTTATTGAGAAGG+TGG | 0.544406 | 8_3:+45119158 | None:intergenic |
| TTGACAAGGACTGGAATGAA+TGG | 0.551690 | 8_3:-45117327 | Msa1290390:CDS |
| TCTTTGAAAGCTTATTGAGA+AGG | 0.554547 | 8_3:+45119155 | None:intergenic |
| GGAATTGAAGGAACGAGAGA+TGG | 0.571262 | 8_3:+45119442 | None:intergenic |
| GTAAACGAAAGAGGATTGCC+CGG | 0.573161 | 8_3:-45117397 | Msa1290390:CDS |
| TGTACCAGGACCTCCATACT+CGG | 0.582407 | 8_3:+45117456 | None:intergenic |
| ATATCAGCCATGTCAATGAA+AGG | 0.593374 | 8_3:+45117421 | None:intergenic |
| ATAGCAGTACGCGCAGCTTG+CGG | 0.618963 | 8_3:+45117370 | None:intergenic |
| GGCCCAAGCTCATGTTGACA+AGG | 0.624353 | 8_3:-45117341 | Msa1290390:CDS |
| TTCTTACATTCCGAGTATGG+AGG | 0.636703 | 8_3:-45117466 | Msa1290390:CDS |
| GACTGGAATGAATGGACAGG+TGG | 0.643824 | 8_3:-45117319 | Msa1290390:CDS |
| AAGGACTGGAATGAATGGAC+AGG | 0.650369 | 8_3:-45117322 | Msa1290390:CDS |
| GTTTGGGAGAAGCATAGCGA+AGG | 0.664504 | 8_3:+45119421 | None:intergenic |
| AACGAAAGAGGATTGCCCGG+AGG | 0.743283 | 8_3:-45117394 | Msa1290390:CDS |
| AGTTGTTGGAGTTTGCACTG+AGG | 0.786173 | 8_3:-45119104 | Msa1290390:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAAATTTAATAAAAGAGTTT+TGG | - | chr8_3:45117075-45117094 | Msa1290390:three_prime_UTR | 10.0% |
| !!! | CTATAATTTAAAATTAGTTT+TGG | - | chr8_3:45117929-45117948 | Msa1290390:intron | 10.0% |
| !!! | TTTTCACAAAAATAAAAAGT+GGG | + | chr8_3:45117383-45117402 | None:intergenic | 15.0% |
| !!! | ATTTTCACAAAAATAAAAAG+TGG | + | chr8_3:45117384-45117403 | None:intergenic | 15.0% |
| !!! | ATAAATAATCTTTTTGTTTG+TGG | - | chr8_3:45117402-45117421 | Msa1290390:CDS | 15.0% |
| !!! | TAAATAATCTTTTTGTTTGT+GGG | - | chr8_3:45117403-45117422 | Msa1290390:CDS | 15.0% |
| !! | TTTGTAATTTCAATACATTT+AGG | - | chr8_3:45117886-45117905 | Msa1290390:intron | 15.0% |
| !! | AAAAAAAGAGAGAAAACTTA+CGG | + | chr8_3:45117354-45117373 | None:intergenic | 20.0% |
| !!! | TATTTTCGTAATTTTGATAC+AGG | + | chr8_3:45117741-45117760 | None:intergenic | 20.0% |
| !! | AATTGAGTATATAACTGTTT+CGG | - | chr8_3:45118027-45118046 | Msa1290390:intron | 20.0% |
| !!! | TATATCTATTCTCTTTTTCT+TGG | - | chr8_3:45118598-45118617 | Msa1290390:intron | 20.0% |
| !! | ACAACACTTTGTATAAAAAT+AGG | + | chr8_3:45118639-45118658 | None:intergenic | 20.0% |
| !!! | CAAACTTGGTTTTTAAAGAA+TGG | - | chr8_3:45117122-45117141 | Msa1290390:three_prime_UTR | 25.0% |
| ! | ATTTCCTTCTATAAACAGAA+AGG | - | chr8_3:45117239-45117258 | Msa1290390:three_prime_UTR | 25.0% |
| !!! | CTTTGTTTTACTAGCTAATT+TGG | - | chr8_3:45117556-45117575 | Msa1290390:intron | 25.0% |
| !!! | ATGTATTTTGTTTGCCATTT+TGG | - | chr8_3:45117770-45117789 | Msa1290390:intron | 25.0% |
| ! | TTCATCAAAGTTATAGAAAG+GGG | + | chr8_3:45117978-45117997 | None:intergenic | 25.0% |
| ! | GTTCATCAAAGTTATAGAAA+GGG | + | chr8_3:45117979-45117998 | None:intergenic | 25.0% |
| ! | TGTTCATCAAAGTTATAGAA+AGG | + | chr8_3:45117980-45117999 | None:intergenic | 25.0% |
| ! | TCTATAACTTTGATGAACAT+AGG | - | chr8_3:45117981-45118000 | Msa1290390:intron | 25.0% |
| ! | CTATAACTTTGATGAACATA+GGG | - | chr8_3:45117982-45118001 | Msa1290390:intron | 25.0% |
| ! | TATGCAACAACATTCAATAA+AGG | + | chr8_3:45118110-45118129 | None:intergenic | 25.0% |
| ! | AAAATCATAAGCACAAATGT+AGG | + | chr8_3:45118145-45118164 | None:intergenic | 25.0% |
| ! | AACTAGGAGTTAAAAATAGT+AGG | - | chr8_3:45118500-45118519 | Msa1290390:intron | 25.0% |
| ! | ACACTTTGTATAAAAATAGG+AGG | + | chr8_3:45118636-45118655 | None:intergenic | 25.0% |
| !! | TAGTACACCTAAACTATTTT+TGG | - | chr8_3:45119030-45119049 | Msa1290390:intron | 25.0% |
| ! | TATACGATCATTCTAAACTA+AGG | + | chr8_3:45119443-45119462 | None:intergenic | 25.0% |
| !! | TTAGTTTAGAATGATCGTAT+AGG | - | chr8_3:45119442-45119461 | Msa1290390:CDS | 25.0% |
| AATCAGCAAATTCAGGAATT+GGG | + | chr8_3:45117331-45117350 | None:intergenic | 30.0% | |
| ! | TCTTTGAAAGCTTATTGAGA+AGG | + | chr8_3:45117458-45117477 | None:intergenic | 30.0% |
| AACAACTACTAGCATATTGA+AGG | + | chr8_3:45117718-45117737 | None:intergenic | 30.0% | |
| TTCAATACATTTAGGAACCA+TGG | - | chr8_3:45117894-45117913 | Msa1290390:intron | 30.0% | |
| TATAGAGTAAACAACTACCA+TGG | + | chr8_3:45117914-45117933 | None:intergenic | 30.0% | |
| GGAAAGATGTCATATTTGAA+GGG | - | chr8_3:45117951-45117970 | Msa1290390:intron | 30.0% | |
| TCATCAAAGTTATAGAAAGG+GGG | + | chr8_3:45117977-45117996 | None:intergenic | 30.0% | |
| ! | CCTATAGATTTTGCTAATAC+AGG | + | chr8_3:45118290-45118309 | None:intergenic | 30.0% |
| CCTGTATTAGCAAAATCTAT+AGG | - | chr8_3:45118287-45118306 | Msa1290390:intron | 30.0% | |
| CTAGTTGCATATATTCAACT+TGG | + | chr8_3:45118486-45118505 | None:intergenic | 30.0% | |
| ! | CAAGTTGAATATATGCAACT+AGG | - | chr8_3:45118484-45118503 | Msa1290390:intron | 30.0% |
| CAACCAAGAAAAAGAGAATA+GGG | - | chr8_3:45118531-45118550 | Msa1290390:intron | 30.0% | |
| ! | ATTCCCTATTCTCTTTTTCT+TGG | + | chr8_3:45118537-45118556 | None:intergenic | 30.0% |
| TTGCAAAATTTGATCAACCA+GGG | - | chr8_3:45118696-45118715 | Msa1290390:intron | 30.0% | |
| ACTAAGTGCTTTCTTCTATA+TGG | - | chr8_3:45119000-45119019 | Msa1290390:intron | 30.0% | |
| TGAAGCTCCAAAAATAGTTT+AGG | + | chr8_3:45119040-45119059 | None:intergenic | 30.0% | |
| !!! | AAAGAGTTTTGGAGTTAGCT+AGG | - | chr8_3:45117086-45117105 | Msa1290390:three_prime_UTR | 35.0% |
| !! | TTTGCATTTGGTAGTGGTTT+GGG | + | chr8_3:45117208-45117227 | None:intergenic | 35.0% |
| TGAGAAACGTTGTTTGCATT+TGG | + | chr8_3:45117220-45117239 | None:intergenic | 35.0% | |
| GTGACCTTTCTGTTTATAGA+AGG | + | chr8_3:45117246-45117265 | None:intergenic | 35.0% | |
| GAATCAGCAAATTCAGGAAT+TGG | + | chr8_3:45117332-45117351 | None:intergenic | 35.0% | |
| !! | TCTTTTTGTTTGTGGGTTTC+AGG | - | chr8_3:45117410-45117429 | Msa1290390:CDS | 35.0% |
| TTGAAAGCTTATTGAGAAGG+TGG | + | chr8_3:45117455-45117474 | None:intergenic | 35.0% | |
| GAATCAGTTGAAGAAGTTGT+TGG | - | chr8_3:45117492-45117511 | Msa1290390:intron | 35.0% | |
| !! | TAGTGAGCTTACTGTCATTT+TGG | - | chr8_3:45117691-45117710 | Msa1290390:intron | 35.0% |
| AACACTCACGATAACCAAAA+TGG | + | chr8_3:45117787-45117806 | None:intergenic | 35.0% | |
| !!! | AGTGTTTTGATCTTCGAAGT+TGG | - | chr8_3:45117801-45117820 | Msa1290390:intron | 35.0% |
| GGGAAAGATGTCATATTTGA+AGG | - | chr8_3:45117950-45117969 | Msa1290390:intron | 35.0% | |
| CCAACAATTAAAGTGTAGCA+TGG | + | chr8_3:45118055-45118074 | None:intergenic | 35.0% | |
| CCATGCTACACTTTAATTGT+TGG | - | chr8_3:45118052-45118071 | Msa1290390:intron | 35.0% | |
| ATAGACTGATCTTAACCTGA+AGG | + | chr8_3:45118222-45118241 | None:intergenic | 35.0% | |
| GCAACCAAGAAAAAGAGAAT+AGG | - | chr8_3:45118530-45118549 | Msa1290390:intron | 35.0% | |
| TAGGGAATGAAGAAGAAGAT+AGG | - | chr8_3:45118549-45118568 | Msa1290390:intron | 35.0% | |
| TTGTCAAATAGCAGTTACAG+TGG | - | chr8_3:45118655-45118674 | Msa1290390:intron | 35.0% | |
| GTTGCAAAATTTGATCAACC+AGG | - | chr8_3:45118695-45118714 | Msa1290390:intron | 35.0% | |
| ATGTTGTCAAATAGACGCTA+TGG | - | chr8_3:45118803-45118822 | Msa1290390:intron | 35.0% | |
| !! | ATTTTAGCACTGTAGTGTAG+CGG | - | chr8_3:45118830-45118849 | Msa1290390:intron | 35.0% |
| ATCATAATCACAGAATCCAC+AGG | + | chr8_3:45119100-45119119 | None:intergenic | 35.0% | |
| ACATTCTTACATTCCGAGTA+TGG | - | chr8_3:45119141-45119160 | Msa1290390:CDS | 35.0% | |
| ATATCAGCCATGTCAATGAA+AGG | + | chr8_3:45119192-45119211 | None:intergenic | 35.0% | |
| GCTGATATTGTAAACGAAAG+AGG | - | chr8_3:45119204-45119223 | Msa1290390:intron | 35.0% | |
| TACAACGAGAGACACTTTAT+TGG | + | chr8_3:45119326-45119345 | None:intergenic | 35.0% | |
| ! | AACATAGTGCTCGAAGTATT+TGG | - | chr8_3:45119510-45119529 | Msa1290390:five_prime_UTR | 35.0% |
| !! | GAGATAAAGCACTGCAAACT+TGG | - | chr8_3:45117108-45117127 | Msa1290390:three_prime_UTR | 40.0% |
| AAGCATAGCGAAGGAATTGA+AGG | + | chr8_3:45117183-45117202 | None:intergenic | 40.0% | |
| !! | GTTTGCATTTGGTAGTGGTT+TGG | + | chr8_3:45117209-45117228 | None:intergenic | 40.0% |
| ACGTTGTTTGCATTTGGTAG+TGG | + | chr8_3:45117214-45117233 | None:intergenic | 40.0% | |
| ! | GAGCGTTTTGTGGATGAAAA+GGG | + | chr8_3:45117276-45117295 | None:intergenic | 40.0% |
| !! | TCTAGTAATGGAGCGTTTTG+TGG | + | chr8_3:45117286-45117305 | None:intergenic | 40.0% |
| ! | GTATTCAGCAGCTCTAGTAA+TGG | + | chr8_3:45117298-45117317 | None:intergenic | 40.0% |
| CTTACGGAATCAGCAAATTC+AGG | + | chr8_3:45117338-45117357 | None:intergenic | 40.0% | |
| GGGAGTGAGCATAAGATTAA+TGG | - | chr8_3:45118002-45118021 | Msa1290390:intron | 40.0% | |
| !! | CATTCTTTTTCACCTTGCTC+TGG | - | chr8_3:45118075-45118094 | Msa1290390:intron | 40.0% |
| ! | TGAGAGTTGTTGTTACCTTC+AGG | - | chr8_3:45118204-45118223 | Msa1290390:intron | 40.0% |
| CATCCCACTCAACGTAATAT+GGG | + | chr8_3:45118336-45118355 | None:intergenic | 40.0% | |
| TCATCCCACTCAACGTAATA+TGG | + | chr8_3:45118337-45118356 | None:intergenic | 40.0% | |
| TAGCAACTATTTGACATCCC+TGG | + | chr8_3:45118716-45118735 | None:intergenic | 40.0% | |
| CAACATGTGGTACTACATAG+CGG | + | chr8_3:45118789-45118808 | None:intergenic | 40.0% | |
| AGCGTCTATTTGACAACATG+TGG | + | chr8_3:45118802-45118821 | None:intergenic | 40.0% | |
| TTGTCAAATAGACGCTATGG+TGG | - | chr8_3:45118806-45118825 | Msa1290390:intron | 40.0% | |
| CACAGGAAACAAGGTAAGTA+TGG | + | chr8_3:45119083-45119102 | None:intergenic | 40.0% | |
| ! | CATACTTACCTTGTTTCCTG+TGG | - | chr8_3:45119081-45119100 | Msa1290390:intron | 40.0% |
| TTCTTACATTCCGAGTATGG+AGG | - | chr8_3:45119144-45119163 | Msa1290390:CDS | 40.0% | |
| GGTTGATCCTTTCATTGACA+TGG | - | chr8_3:45119182-45119201 | Msa1290390:intron | 40.0% | |
| TTGACAAGGACTGGAATGAA+TGG | - | chr8_3:45119283-45119302 | Msa1290390:CDS | 40.0% | |
| AACGAGAGATGGTACAAGAC+AGG | + | chr8_3:45117160-45117179 | None:intergenic | 45.0% | |
| GGAATTGAAGGAACGAGAGA+TGG | + | chr8_3:45117171-45117190 | None:intergenic | 45.0% | |
| !! | GGAGCGTTTTGTGGATGAAA+AGG | + | chr8_3:45117277-45117296 | None:intergenic | 45.0% |
| GCAAATTCAGGAATTGGGTC+AGG | + | chr8_3:45117326-45117345 | None:intergenic | 45.0% | |
| TGTTTGTGGGTTTCAGGAGA+CGG | - | chr8_3:45117416-45117435 | Msa1290390:CDS | 45.0% | |
| AGTTGTTGGAGTTTGCACTG+AGG | - | chr8_3:45117506-45117525 | Msa1290390:intron | 45.0% | |
| AGGTGAACATATCCAGAGCA+AGG | + | chr8_3:45118090-45118109 | None:intergenic | 45.0% | |
| AGCACCCATATTACGTTGAG+TGG | - | chr8_3:45118329-45118348 | Msa1290390:intron | 45.0% | |
| GCACCCATATTACGTTGAGT+GGG | - | chr8_3:45118330-45118349 | Msa1290390:intron | 45.0% | |
| GTTGAGTGGGATGACCAAAT+AGG | - | chr8_3:45118343-45118362 | Msa1290390:intron | 45.0% | |
| GTGGGATGACCAAATAGGAT+TGG | - | chr8_3:45118348-45118367 | Msa1290390:intron | 45.0% | |
| CAGACACAGCCAATCCTATT+TGG | + | chr8_3:45118360-45118379 | None:intergenic | 45.0% | |
| GTGTTGTCAATCACAGATCG+CGG | + | chr8_3:45118878-45118897 | None:intergenic | 45.0% | |
| !! | CAACCAAAGGTAGTGGAGAA+AGG | + | chr8_3:45118954-45118973 | None:intergenic | 45.0% |
| CTTTCTCCACTACCTTTGGT+TGG | - | chr8_3:45118952-45118971 | Msa1290390:intron | 45.0% | |
| AGTCATTGCATGCCAACCAA+AGG | + | chr8_3:45118967-45118986 | None:intergenic | 45.0% | |
| CACAGAATCCACAGGAAACA+AGG | + | chr8_3:45119092-45119111 | None:intergenic | 45.0% | |
| GTAAACGAAAGAGGATTGCC+CGG | - | chr8_3:45119213-45119232 | Msa1290390:intron | 45.0% | |
| TGCGCGTACTGCTATCAATT+GGG | - | chr8_3:45119248-45119267 | Msa1290390:intron | 45.0% | |
| GTCCTTGTCAACATGAGCTT+GGG | + | chr8_3:45119274-45119293 | None:intergenic | 45.0% | |
| AGTCCTTGTCAACATGAGCT+TGG | + | chr8_3:45119275-45119294 | None:intergenic | 45.0% | |
| AAGCTCATGTTGACAAGGAC+TGG | - | chr8_3:45119274-45119293 | Msa1290390:intron | 45.0% | |
| AAGGACTGGAATGAATGGAC+AGG | - | chr8_3:45119288-45119307 | Msa1290390:CDS | 45.0% | |
| !!! | TATAATTTAAAATTAGTTTT+GGG | - | chr8_3:45117930-45117949 | Msa1290390:intron | 5.0% |
| ! | GTTTGGGAGAAGCATAGCGA+AGG | + | chr8_3:45117192-45117211 | None:intergenic | 50.0% |
| GTTGGAGTTTGCACTGAGGT+TGG | - | chr8_3:45117510-45117529 | Msa1290390:intron | 50.0% | |
| TCACAGATCGCGGAAGATAG+CGG | + | chr8_3:45118868-45118887 | None:intergenic | 50.0% | |
| CAGCCTTTCTCCACTACCTT+TGG | - | chr8_3:45118948-45118967 | Msa1290390:intron | 50.0% | |
| TGCATGCCAACCAAAGGTAG+TGG | + | chr8_3:45118961-45118980 | None:intergenic | 50.0% | |
| TGTACCAGGACCTCCATACT+CGG | + | chr8_3:45119157-45119176 | None:intergenic | 50.0% | |
| ! | GGATCAACCAAGAGTGTACC+AGG | + | chr8_3:45119171-45119190 | None:intergenic | 50.0% |
| CTGCGCGTACTGCTATCAAT+TGG | - | chr8_3:45119247-45119266 | Msa1290390:intron | 50.0% | |
| GACTGGAATGAATGGACAGG+TGG | - | chr8_3:45119291-45119310 | Msa1290390:CDS | 50.0% | |
| ! | GATCGCGGAAGATAGCGGTT+TGG | + | chr8_3:45118863-45118882 | None:intergenic | 55.0% |
| CATTCCGAGTATGGAGGTCC+TGG | - | chr8_3:45119150-45119169 | Msa1290390:CDS | 55.0% | |
| TGGAGGTCCTGGTACACTCT+TGG | - | chr8_3:45119161-45119180 | Msa1290390:CDS | 55.0% | |
| AACGAAAGAGGATTGCCCGG+AGG | - | chr8_3:45119216-45119235 | Msa1290390:intron | 55.0% | |
| ATAGCAGTACGCGCAGCTTG+CGG | + | chr8_3:45119243-45119262 | None:intergenic | 55.0% | |
| GGCCCAAGCTCATGTTGACA+AGG | - | chr8_3:45119269-45119288 | Msa1290390:intron | 55.0% | |
| ACGCGCAGCTTGCGGTCCTC+CGG | + | chr8_3:45119235-45119254 | None:intergenic | 70.0% | |
| CGCGCAGCTTGCGGTCCTCC+GGG | + | chr8_3:45119234-45119253 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 45117068 | 45119564 | 45117068 | ID=Msa1290390;Name=Msa1290390 |
| chr8_3 | mRNA | 45117068 | 45119564 | 45117068 | ID=Msa1290390-mRNA-1;Parent=Msa1290390;Name=Msa1290390-mRNA-1;_AED=0.06;_eAED=0.06;_QI=73|0.33|0.75|0.75|1|1|4|235|174 |
| chr8_3 | exon | 45117068 | 45117500 | 45117068 | ID=Msa1290390-mRNA-1:exon:12457;Parent=Msa1290390-mRNA-1 |
| chr8_3 | exon | 45118388 | 45118406 | 45118388 | ID=Msa1290390-mRNA-1:exon:12456;Parent=Msa1290390-mRNA-1 |
| chr8_3 | exon | 45119105 | 45119200 | 45119105 | ID=Msa1290390-mRNA-1:exon:12455;Parent=Msa1290390-mRNA-1 |
| chr8_3 | exon | 45119280 | 45119564 | 45119280 | ID=Msa1290390-mRNA-1:exon:12454;Parent=Msa1290390-mRNA-1 |
| chr8_3 | five_prime_UTR | 45119492 | 45119564 | 45119492 | ID=Msa1290390-mRNA-1:five_prime_utr;Parent=Msa1290390-mRNA-1 |
| chr8_3 | CDS | 45119280 | 45119491 | 45119280 | ID=Msa1290390-mRNA-1:cds;Parent=Msa1290390-mRNA-1 |
| chr8_3 | CDS | 45119105 | 45119200 | 45119105 | ID=Msa1290390-mRNA-1:cds;Parent=Msa1290390-mRNA-1 |
| chr8_3 | CDS | 45118388 | 45118406 | 45118388 | ID=Msa1290390-mRNA-1:cds;Parent=Msa1290390-mRNA-1 |
| chr8_3 | CDS | 45117303 | 45117500 | 45117303 | ID=Msa1290390-mRNA-1:cds;Parent=Msa1290390-mRNA-1 |
| chr8_3 | three_prime_UTR | 45117068 | 45117302 | 45117068 | ID=Msa1290390-mRNA-1:three_prime_utr;Parent=Msa1290390-mRNA-1 |
| Gene Sequence |
| Protein sequence |
