Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1291650 | sp|Q9SJ44|UEV1C_ARATH | 60.366 | 164 | 10 | 2 | 1 | 164 | 37 | 145 | 4.08e-62 | 191 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1291650 | B7FF81 | 65.854 | 164 | 3 | 1 | 1 | 164 | 38 | 148 | 9.55e-68 | 212 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0657970 | Msa1291650 | 0.800011 | 1.759973e-48 | -8.615850e-47 |
| Msa1082500 | Msa1291650 | 0.809433 | 1.897206e-50 | -8.615850e-47 |
| Msa0484780 | Msa1291650 | 0.803670 | 3.119760e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1291650 | MtrunA17_Chr1g0177971 | 53.659 | 164 | 21 | 2 | 1 | 164 | 38 | 146 | 9.65e-53 | 164 |
| Msa1291650 | MtrunA17_Chr8g0391521 | 44.720 | 161 | 34 | 3 | 1 | 161 | 36 | 141 | 2.07e-38 | 128 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1291650 | AT2G36060.1 | 60.366 | 164 | 10 | 2 | 1 | 164 | 37 | 145 | 4.14e-63 | 191 |
| Msa1291650 | AT2G36060.3 | 59.146 | 164 | 11 | 2 | 1 | 164 | 37 | 144 | 1.85e-61 | 187 |
| Msa1291650 | AT2G36060.2 | 60.000 | 165 | 10 | 3 | 1 | 164 | 37 | 146 | 1.89e-61 | 187 |
| Msa1291650 | AT3G52560.1 | 49.390 | 164 | 28 | 2 | 1 | 164 | 38 | 146 | 3.22e-47 | 150 |
| Msa1291650 | AT3G52560.2 | 49.091 | 165 | 28 | 3 | 1 | 164 | 38 | 147 | 1.99e-45 | 146 |
| Msa1291650 | AT3G52560.3 | 49.091 | 165 | 28 | 3 | 1 | 164 | 1 | 110 | 2.15e-45 | 145 |
| Msa1291650 | AT3G52560.4 | 44.505 | 182 | 28 | 3 | 1 | 164 | 38 | 164 | 8.01e-43 | 140 |
| Msa1291650 | AT1G23260.2 | 45.342 | 161 | 33 | 2 | 1 | 161 | 1 | 106 | 1.01e-42 | 138 |
| Msa1291650 | AT1G23260.1 | 45.342 | 161 | 33 | 2 | 1 | 161 | 36 | 141 | 2.03e-42 | 139 |
| Msa1291650 | AT1G70660.2 | 43.827 | 162 | 36 | 2 | 1 | 162 | 36 | 142 | 1.30e-40 | 134 |
| Msa1291650 | AT1G70660.1 | 43.827 | 162 | 36 | 2 | 1 | 162 | 36 | 142 | 2.10e-40 | 134 |
| Msa1291650 | AT1G70650.2 | 43.827 | 162 | 36 | 2 | 1 | 162 | 472 | 578 | 4.35e-37 | 134 |
Find 50 sgRNAs with CRISPR-Local
Find 133 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAGTTTGAACCAAAGAAATT+TGG | 0.174425 | 8_3:+47129211 | Msa1291650:CDS |
| CTGCCATTTCTTTCTTCAGC+TGG | 0.199609 | 8_3:-47129282 | None:intergenic |
| ATGACATTTACATGCGCTTT+TGG | 0.270771 | 8_3:+47128175 | Msa1291650:CDS |
| AATTTGGGCTTCTTGCAAAT+TGG | 0.294147 | 8_3:+47129227 | Msa1291650:CDS |
| GCAAGAAGCCCAAATTTCTT+TGG | 0.297912 | 8_3:-47129220 | None:intergenic |
| TGCTAAAAGTAAGTTCCTTC+TGG | 0.317643 | 8_3:-47129334 | None:intergenic |
| TCCAAGGAACTTCAGATTGC+TGG | 0.330124 | 8_3:+47128086 | Msa1291650:five_prime_UTR |
| CTGATACCACACCAGTTTCA+TGG | 0.330928 | 8_3:-47129026 | None:intergenic |
| CTGGAGGCTGGACAAGCTTC+CGG | 0.358439 | 8_3:-47129315 | None:intergenic |
| GAGCTTGAACGAGGTGAAAA+AGG | 0.363928 | 8_3:+47128111 | Msa1291650:five_prime_UTR |
| AGTTTGAACCAAAGAAATTT+GGG | 0.364831 | 8_3:+47129212 | Msa1291650:CDS |
| TGCCATTTCTTTCTTCAGCT+GGG | 0.392353 | 8_3:-47129281 | None:intergenic |
| AGAAGAGATACTTACATTAT+GGG | 0.408444 | 8_3:-47128217 | None:intergenic |
| AAATGGCAGCCCCTCATAAC+CGG | 0.419954 | 8_3:+47129296 | Msa1291650:CDS |
| TCCATGACGCTTGGCTCAGC+CGG | 0.429765 | 8_3:+47126989 | Msa1291650:five_prime_UTR |
| CTCTGATAACAATGGATTCA+AGG | 0.431670 | 8_3:-47129165 | None:intergenic |
| TGGACAAGCTTCCGGTTATG+AGG | 0.443651 | 8_3:-47129307 | None:intergenic |
| AGTAAGTTCCTTCTGGAGGC+TGG | 0.451073 | 8_3:-47129327 | None:intergenic |
| TCCAGCAATCTGAAGTTCCT+TGG | 0.453074 | 8_3:-47128087 | None:intergenic |
| ACTTGTGTTAACCATGAAAC+TGG | 0.462151 | 8_3:+47129015 | Msa1291650:CDS |
| CAGAAAAGCCACCAAGTGTT+CGG | 0.466216 | 8_3:+47128971 | Msa1291650:CDS |
| TGTGGATAATAAACAAAGAA+AGG | 0.477145 | 8_3:-47126893 | None:intergenic |
| GAAGAGATACTTACATTATG+GGG | 0.506306 | 8_3:-47128216 | None:intergenic |
| CGTGAATGAAACCGAACACT+TGG | 0.516365 | 8_3:-47128982 | None:intergenic |
| GGACAAGCTTCCGGTTATGA+GGG | 0.527492 | 8_3:-47129306 | None:intergenic |
| GAAAAGAAGAACGCGAATTG+TGG | 0.528211 | 8_3:-47126911 | None:intergenic |
| CTAACCAACGACACTGGATC+CGG | 0.530087 | 8_3:-47127008 | None:intergenic |
| GAATGAAACCGAACACTTGG+TGG | 0.530824 | 8_3:-47128979 | None:intergenic |
| TCCGGCTGAGCCAAGCGTCA+TGG | 0.534232 | 8_3:-47126990 | None:intergenic |
| CAAAATCCATCCATGACGCT+TGG | 0.537360 | 8_3:+47126980 | Msa1291650:five_prime_UTR |
| GACCCAGCTGAAGAAAGAAA+TGG | 0.541436 | 8_3:+47129279 | Msa1291650:CDS |
| ACAACACTAACCAACGACAC+TGG | 0.562677 | 8_3:-47127014 | None:intergenic |
| TACTTTCAGACTGTACATGA+AGG | 0.576173 | 8_3:+47128907 | Msa1291650:intron |
| GAAGATGATATGAAAGCATG+TGG | 0.582910 | 8_3:-47129058 | None:intergenic |
| GCTGAGCCAAGCGTCATGGA+TGG | 0.584022 | 8_3:-47126986 | None:intergenic |
| TGGCACTGTTAGCTATTGAA+TGG | 0.584091 | 8_3:+47128143 | Msa1291650:exon |
| GATTACATCTCTGATAACAA+TGG | 0.592602 | 8_3:-47129173 | None:intergenic |
| TGCGCTTCAATGCAGTTCCA+AGG | 0.596013 | 8_3:+47128070 | Msa1291650:intron |
| TCAGCCGGATCCAGTGTCGT+TGG | 0.597999 | 8_3:+47127004 | Msa1291650:five_prime_UTR |
| AAGCTTGTCCAGCCTCCAGA+AGG | 0.603455 | 8_3:+47129319 | Msa1291650:CDS |
| GTTAGCTATTGAATGGATGA+TGG | 0.605015 | 8_3:+47128150 | Msa1291650:exon |
| AAGGAACTTCAGATTGCTGG+AGG | 0.606974 | 8_3:+47128089 | Msa1291650:five_prime_UTR |
| GACAAGCTTCCGGTTATGAG+GGG | 0.622492 | 8_3:-47129305 | None:intergenic |
| GTGGGTGTTGTGGATCTGAT+CGG | 0.654179 | 8_3:-47126952 | None:intergenic |
| TTGCTGGAGGAGCTTGAACG+AGG | 0.667991 | 8_3:+47128102 | Msa1291650:five_prime_UTR |
| TAAAAGTAAGTTCCTTCTGG+AGG | 0.670760 | 8_3:-47129331 | None:intergenic |
| AAGAGATACTTACATTATGG+GGG | 0.682580 | 8_3:-47128215 | None:intergenic |
| TTGGCAAAGAGAGTACAGCA+TGG | 0.708361 | 8_3:+47129246 | Msa1291650:CDS |
| TGTTAACCATGAAACTGGTG+TGG | 0.715494 | 8_3:+47129020 | Msa1291650:CDS |
| GCAAAGAGAGTACAGCATGG+AGG | 0.733074 | 8_3:+47129249 | Msa1291650:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCTATTTCTTTAAATTATA+TGG | - | chr8_3:47127490-47127509 | None:intergenic | 10.0% |
| !! | TAATTGAGTAAAAATGAAAA+CGG | - | chr8_3:47127057-47127076 | None:intergenic | 15.0% |
| !!! | TATGTAATTGTTGTTAATTT+TGG | + | chr8_3:47127180-47127199 | Msa1291650:intron | 15.0% |
| !!! | ATGTAATTGTTGTTAATTTT+GGG | + | chr8_3:47127181-47127200 | Msa1291650:intron | 15.0% |
| !!! | TTTTTTTTTTTTTTTACCGA+TGG | + | chr8_3:47127204-47127223 | Msa1291650:intron | 15.0% |
| !! | TGATAGTTTAAAAAGAAAAT+TGG | + | chr8_3:47127656-47127675 | Msa1291650:intron | 15.0% |
| !! | TAAAAAGAAAATTGGTAAAA+TGG | + | chr8_3:47127664-47127683 | Msa1291650:intron | 15.0% |
| !! | AAATATGTAGTATGAATTAT+TGG | + | chr8_3:47128766-47128785 | Msa1291650:intron | 15.0% |
| !! | ATTACAAAGACATAATTAAC+TGG | - | chr8_3:47127861-47127880 | None:intergenic | 20.0% |
| !! | ATATATCACTTCTTACTTAT+TGG | + | chr8_3:47128661-47128680 | Msa1291650:intron | 20.0% |
| ! | TGTGGATAATAAACAAAGAA+AGG | - | chr8_3:47126896-47126915 | None:intergenic | 25.0% |
| !! | AAAACTACATCGATGATTTT+AGG | - | chr8_3:47127151-47127170 | None:intergenic | 25.0% |
| !!! | TTTTTTTACCGATGGAATTT+TGG | + | chr8_3:47127212-47127231 | Msa1291650:intron | 25.0% |
| !! | ATTGAAATGTTCGATCATTT+TGG | + | chr8_3:47127332-47127351 | Msa1291650:intron | 25.0% |
| !! | ATGTTTCTGTATGAAGTTTA+AGG | + | chr8_3:47127434-47127453 | Msa1291650:intron | 25.0% |
| ! | AAAGAAAATTGGTAAAATGG+TGG | + | chr8_3:47127667-47127686 | Msa1291650:intron | 25.0% |
| ! | AAGAAAATTGGTAAAATGGT+GGG | + | chr8_3:47127668-47127687 | Msa1291650:intron | 25.0% |
| ! | CTGTAACTGAATTATAATTC+TGG | + | chr8_3:47127720-47127739 | Msa1291650:intron | 25.0% |
| ! | GATATGTACAAAATATTAGC+CGG | - | chr8_3:47127758-47127777 | None:intergenic | 25.0% |
| ! | AGAAGAGATACTTACATTAT+GGG | - | chr8_3:47128220-47128239 | None:intergenic | 25.0% |
| !!! | TAAACTGGTTCTAACAAATT+AGG | - | chr8_3:47128328-47128347 | None:intergenic | 25.0% |
| ! | AGTTTGAACCAAAGAAATTT+GGG | + | chr8_3:47129212-47129231 | Msa1291650:CDS | 25.0% |
| TTTCAAATATGTATTGCCTC+AGG | - | chr8_3:47127791-47127810 | None:intergenic | 30.0% | |
| TTCGAAATCCTAAAACTCAA+GGG | - | chr8_3:47127946-47127965 | None:intergenic | 30.0% | |
| ATTCGAAATCCTAAAACTCA+AGG | - | chr8_3:47127947-47127966 | None:intergenic | 30.0% | |
| !!! | TGAGTTTTAGGATTTCGAAT+TGG | + | chr8_3:47127947-47127966 | Msa1291650:intron | 30.0% |
| !!! | GAGTTTTAGGATTTCGAATT+GGG | + | chr8_3:47127948-47127967 | Msa1291650:intron | 30.0% |
| ! | AAAGGGTTATGTTTCTTTTG+TGG | + | chr8_3:47127989-47128008 | Msa1291650:intron | 30.0% |
| AAGAGATACTTACATTATGG+GGG | - | chr8_3:47128218-47128237 | None:intergenic | 30.0% | |
| GAAGAGATACTTACATTATG+GGG | - | chr8_3:47128219-47128238 | None:intergenic | 30.0% | |
| GAGAAGAGATACTTACATTA+TGG | - | chr8_3:47128221-47128240 | None:intergenic | 30.0% | |
| ATATTACGCACACCTAAAAA+TGG | - | chr8_3:47128249-47128268 | None:intergenic | 30.0% | |
| TTTGTTAGAACCAGTTTATG+TGG | + | chr8_3:47128330-47128349 | Msa1291650:intron | 30.0% | |
| ! | TTTATGCGAAGTGTTTACAT+CGG | + | chr8_3:47128491-47128510 | Msa1291650:intron | 30.0% |
| GTATGAATTATTGGTGTATC+TGG | + | chr8_3:47128775-47128794 | Msa1291650:intron | 30.0% | |
| TATCTGGAAATCTGAAAGTT+CGG | + | chr8_3:47128791-47128810 | Msa1291650:intron | 30.0% | |
| GATTACATCTCTGATAACAA+TGG | - | chr8_3:47129176-47129195 | None:intergenic | 30.0% | |
| CAGTTTGAACCAAAGAAATT+TGG | + | chr8_3:47129211-47129230 | Msa1291650:CDS | 30.0% | |
| !! | TGGATGGATTTTGTTGAAGT+GGG | - | chr8_3:47126973-47126992 | None:intergenic | 35.0% |
| !! | ATGGATGGATTTTGTTGAAG+TGG | - | chr8_3:47126974-47126993 | None:intergenic | 35.0% |
| ! | TTACCGATGGAATTTTGGAT+CGG | + | chr8_3:47127217-47127236 | Msa1291650:intron | 35.0% |
| TTATATGGATGTCAACGTGT+TGG | - | chr8_3:47127475-47127494 | None:intergenic | 35.0% | |
| ATGAATGTTACTGCATGTGT+CGG | + | chr8_3:47127514-47127533 | Msa1291650:intron | 35.0% | |
| AATCACACTTATCTCGTAGA+CGG | - | chr8_3:47127625-47127644 | None:intergenic | 35.0% | |
| GTTACAGAAAACTTGCACAA+AGG | - | chr8_3:47127707-47127726 | None:intergenic | 35.0% | |
| ! | ATTCTGGTTGTTCTTGTTTC+CGG | + | chr8_3:47127736-47127755 | Msa1291650:intron | 35.0% |
| CATATCATGTGTTTATCCTG+AGG | + | chr8_3:47127772-47127791 | Msa1291650:intron | 35.0% | |
| AATTGGGTGTGGTTAAAACA+TGG | + | chr8_3:47127964-47127983 | Msa1291650:intron | 35.0% | |
| TGTGGTTAAAACATGGAGAA+AGG | + | chr8_3:47127971-47127990 | Msa1291650:intron | 35.0% | |
| GTGGTTAAAACATGGAGAAA+GGG | + | chr8_3:47127972-47127991 | Msa1291650:intron | 35.0% | |
| GTTAGCTATTGAATGGATGA+TGG | + | chr8_3:47128150-47128169 | Msa1291650:exon | 35.0% | |
| ! | ATGACATTTACATGCGCTTT+TGG | + | chr8_3:47128175-47128194 | Msa1291650:CDS | 35.0% |
| !! | TCTTCTCTGCATCCATTTTT+AGG | + | chr8_3:47128234-47128253 | Msa1291650:intron | 35.0% |
| TATCCAACTTCCACATAAAC+TGG | - | chr8_3:47128343-47128362 | None:intergenic | 35.0% | |
| CTGTATTTGCACATGAACAT+TGG | + | chr8_3:47128441-47128460 | Msa1291650:intron | 35.0% | |
| ! | TCATTTTGTGCGTACTTAAC+AGG | + | chr8_3:47128848-47128867 | Msa1291650:intron | 35.0% |
| TACTTTCAGACTGTACATGA+AGG | + | chr8_3:47128907-47128926 | Msa1291650:intron | 35.0% | |
| ACTTGTGTTAACCATGAAAC+TGG | + | chr8_3:47129015-47129034 | Msa1291650:CDS | 35.0% | |
| ! | GAAGATGATATGAAAGCATG+TGG | - | chr8_3:47129061-47129080 | None:intergenic | 35.0% |
| !!! | GCACAATCTCTTTGCTTTTT+TGG | + | chr8_3:47129136-47129155 | Msa1291650:CDS | 35.0% |
| ! | CTCTGATAACAATGGATTCA+AGG | - | chr8_3:47129168-47129187 | None:intergenic | 35.0% |
| AATTTGGGCTTCTTGCAAAT+TGG | + | chr8_3:47129227-47129246 | Msa1291650:CDS | 35.0% | |
| TAAAAGTAAGTTCCTTCTGG+AGG | - | chr8_3:47129334-47129353 | None:intergenic | 35.0% | |
| GAAAAGAAGAACGCGAATTG+TGG | - | chr8_3:47126914-47126933 | None:intergenic | 40.0% | |
| !! | TTTTGTTGAAGTGGGTGTTG+TGG | - | chr8_3:47126965-47126984 | None:intergenic | 40.0% |
| TCACCGATCCAAAATTCCAT+CGG | - | chr8_3:47127223-47127242 | None:intergenic | 40.0% | |
| ! | TTCGAGCTGTGAATTTTGCT+CGG | + | chr8_3:47127250-47127269 | Msa1291650:intron | 40.0% |
| ! | TTTTGGATTCTGATGCGTGT+CGG | + | chr8_3:47127553-47127572 | Msa1291650:intron | 40.0% |
| ! | TGTTTCAGCCCTTGAGTTTT+AGG | + | chr8_3:47127935-47127954 | Msa1291650:intron | 40.0% |
| TTAGGATTTCGAATTGGGTG+TGG | + | chr8_3:47127953-47127972 | Msa1291650:intron | 40.0% | |
| TAAGCATGGGAGTAGTAACT+AGG | - | chr8_3:47128044-47128063 | None:intergenic | 40.0% | |
| AAGCGCACACATTTAAGCAT+GGG | - | chr8_3:47128057-47128076 | None:intergenic | 40.0% | |
| ! | GAACGAGGTGAAAAAGGTAT+TGG | + | chr8_3:47128117-47128136 | Msa1291650:five_prime_UTR | 40.0% |
| !! | GGTGAAAAAGGTATTGGTGA+TGG | + | chr8_3:47128123-47128142 | Msa1291650:five_prime_UTR | 40.0% |
| TGGCACTGTTAGCTATTGAA+TGG | + | chr8_3:47128143-47128162 | Msa1291650:exon | 40.0% | |
| ! | ATTTACATGCGCTTTTGGAC+TGG | + | chr8_3:47128180-47128199 | Msa1291650:CDS | 40.0% |
| GAACCAGTTTATGTGGAAGT+TGG | + | chr8_3:47128337-47128356 | Msa1291650:intron | 40.0% | |
| CTGTATTTGCACATGAACAC+TGG | + | chr8_3:47128576-47128595 | Msa1291650:intron | 40.0% | |
| ! | TTTTGTGCGTACTTAACAGG+TGG | + | chr8_3:47128851-47128870 | Msa1291650:intron | 40.0% |
| ! | GTACTTAACAGGTGGTTTTC+AGG | + | chr8_3:47128859-47128878 | Msa1291650:intron | 40.0% |
| TGTTAACCATGAAACTGGTG+TGG | + | chr8_3:47129020-47129039 | Msa1291650:CDS | 40.0% | |
| GCAAGAAGCCCAAATTTCTT+TGG | - | chr8_3:47129223-47129242 | None:intergenic | 40.0% | |
| ! | TGCCATTTCTTTCTTCAGCT+GGG | - | chr8_3:47129284-47129303 | None:intergenic | 40.0% |
| CAAAATCCATCCATGACGCT+TGG | + | chr8_3:47126980-47126999 | Msa1291650:five_prime_UTR | 45.0% | |
| ACAACACTAACCAACGACAC+TGG | - | chr8_3:47127017-47127036 | None:intergenic | 45.0% | |
| !!! | GCGTCGTTGGTGTTATGTTT+TGG | + | chr8_3:47127536-47127555 | Msa1291650:intron | 45.0% |
| GAAGCGCACACATTTAAGCA+TGG | - | chr8_3:47128058-47128077 | None:intergenic | 45.0% | |
| TCCAAGGAACTTCAGATTGC+TGG | + | chr8_3:47128086-47128105 | Msa1291650:five_prime_UTR | 45.0% | |
| ! | TCCAGCAATCTGAAGTTCCT+TGG | - | chr8_3:47128090-47128109 | None:intergenic | 45.0% |
| AAGGAACTTCAGATTGCTGG+AGG | + | chr8_3:47128089-47128108 | Msa1291650:five_prime_UTR | 45.0% | |
| GAGCTTGAACGAGGTGAAAA+AGG | + | chr8_3:47128111-47128130 | Msa1291650:five_prime_UTR | 45.0% | |
| !!! | TTTTGGACTGGCACCATCAT+CGG | + | chr8_3:47128192-47128211 | Msa1291650:CDS | 45.0% |
| ! | TATGCTCTGTTGCTTCAAGC+TGG | - | chr8_3:47128383-47128402 | None:intergenic | 45.0% |
| GCTCACAAGCAACTAAACAC+AGG | - | chr8_3:47128413-47128432 | None:intergenic | 45.0% | |
| GCTCACAAGCAACTAAACAC+AGG | - | chr8_3:47128413-47128432 | None:intergenic | 45.0% | |
| ! | CGTATGCCCTTCCTATGTTT+TGG | + | chr8_3:47128704-47128723 | Msa1291650:intron | 45.0% |
| !! | ATGCCCTTCCTATGTTTTGG+CGG | + | chr8_3:47128707-47128726 | Msa1291650:intron | 45.0% |
| GAAAAGACCCGCCAAAACAT+AGG | - | chr8_3:47128718-47128737 | None:intergenic | 45.0% | |
| !! | GAACACTTGGTGGCTTTTCT+GGG | - | chr8_3:47128972-47128991 | None:intergenic | 45.0% |
| CAGAAAAGCCACCAAGTGTT+CGG | + | chr8_3:47128971-47128990 | Msa1291650:CDS | 45.0% | |
| GAATGAAACCGAACACTTGG+TGG | - | chr8_3:47128982-47129001 | None:intergenic | 45.0% | |
| CGTGAATGAAACCGAACACT+TGG | - | chr8_3:47128985-47129004 | None:intergenic | 45.0% | |
| CTGATACCACACCAGTTTCA+TGG | - | chr8_3:47129029-47129048 | None:intergenic | 45.0% | |
| CATGAAACTGGTGTGGTATC+AGG | + | chr8_3:47129027-47129046 | Msa1291650:intron | 45.0% | |
| ! | TTGGCAAAGAGAGTACAGCA+TGG | + | chr8_3:47129246-47129265 | Msa1291650:CDS | 45.0% |
| GACCCAGCTGAAGAAAGAAA+TGG | + | chr8_3:47129279-47129298 | Msa1291650:CDS | 45.0% | |
| ! | CTGCCATTTCTTTCTTCAGC+TGG | - | chr8_3:47129285-47129304 | None:intergenic | 45.0% |
| ! | GTGGGTGTTGTGGATCTGAT+CGG | - | chr8_3:47126955-47126974 | None:intergenic | 50.0% |
| CTAACCAACGACACTGGATC+CGG | - | chr8_3:47127011-47127030 | None:intergenic | 50.0% | |
| TGATGCGTGTCGGACACTTT+GGG | + | chr8_3:47127563-47127582 | Msa1291650:intron | 50.0% | |
| TGCGCTTCAATGCAGTTCCA+AGG | + | chr8_3:47128070-47128089 | Msa1291650:intron | 50.0% | |
| TACATTATGGGGGCCGATGA+TGG | - | chr8_3:47128208-47128227 | None:intergenic | 50.0% | |
| !!! | TGCCCTTCCTATGTTTTGGC+GGG | + | chr8_3:47128708-47128727 | Msa1291650:intron | 50.0% |
| GACCCGCCAAAACATAGGAA+GGG | - | chr8_3:47128713-47128732 | None:intergenic | 50.0% | |
| AGACCCGCCAAAACATAGGA+AGG | - | chr8_3:47128714-47128733 | None:intergenic | 50.0% | |
| !! | CGAACACTTGGTGGCTTTTC+TGG | - | chr8_3:47128973-47128992 | None:intergenic | 50.0% |
| ! | GCAAAGAGAGTACAGCATGG+AGG | + | chr8_3:47129249-47129268 | Msa1291650:CDS | 50.0% |
| AAATGGCAGCCCCTCATAAC+CGG | + | chr8_3:47129296-47129315 | Msa1291650:CDS | 50.0% | |
| GACAAGCTTCCGGTTATGAG+GGG | - | chr8_3:47129308-47129327 | None:intergenic | 50.0% | |
| GGACAAGCTTCCGGTTATGA+GGG | - | chr8_3:47129309-47129328 | None:intergenic | 50.0% | |
| TGGACAAGCTTCCGGTTATG+AGG | - | chr8_3:47129310-47129329 | None:intergenic | 50.0% | |
| ! | AGTAAGTTCCTTCTGGAGGC+TGG | - | chr8_3:47129330-47129349 | None:intergenic | 50.0% |
| CTGATGCGTGTCGGACACTT+TGG | + | chr8_3:47127562-47127581 | Msa1291650:intron | 55.0% | |
| GATGCGTGTCGGACACTTTG+GGG | + | chr8_3:47127564-47127583 | Msa1291650:intron | 55.0% | |
| ATGCGTGTCGGACACTTTGG+GGG | + | chr8_3:47127565-47127584 | Msa1291650:intron | 55.0% | |
| TTGCTGGAGGAGCTTGAACG+AGG | + | chr8_3:47128102-47128121 | Msa1291650:five_prime_UTR | 55.0% | |
| AAGCTTGTCCAGCCTCCAGA+AGG | + | chr8_3:47129319-47129338 | Msa1291650:CDS | 55.0% | |
| GCTGAGCCAAGCGTCATGGA+TGG | - | chr8_3:47126989-47127008 | None:intergenic | 60.0% | |
| TCCATGACGCTTGGCTCAGC+CGG | + | chr8_3:47126989-47127008 | Msa1291650:five_prime_UTR | 60.0% | |
| TCAGCCGGATCCAGTGTCGT+TGG | + | chr8_3:47127004-47127023 | Msa1291650:five_prime_UTR | 60.0% | |
| ! | ACTGCATGTGTCGGCGTCGT+TGG | + | chr8_3:47127523-47127542 | Msa1291650:intron | 60.0% |
| CTGGAGGCTGGACAAGCTTC+CGG | - | chr8_3:47129318-47129337 | None:intergenic | 60.0% | |
| TCCGGCTGAGCCAAGCGTCA+TGG | - | chr8_3:47126993-47127012 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 47126863 | 47129354 | 47126863 | ID=Msa1291650;Name=Msa1291650 |
| chr8_3 | mRNA | 47126863 | 47129354 | 47126863 | ID=Msa1291650-mRNA-1;Parent=Msa1291650;Name=Msa1291650-mRNA-1;_AED=0.29;_eAED=0.29;_QI=240|0.66|0.5|1|0|0|4|0|164 |
| chr8_3 | exon | 47126863 | 47127025 | 47126863 | ID=Msa1291650-mRNA-1:exon:13117;Parent=Msa1291650-mRNA-1 |
| chr8_3 | exon | 47128085 | 47128224 | 47128085 | ID=Msa1291650-mRNA-1:exon:13118;Parent=Msa1291650-mRNA-1 |
| chr8_3 | exon | 47128916 | 47129041 | 47128916 | ID=Msa1291650-mRNA-1:exon:13119;Parent=Msa1291650-mRNA-1 |
| chr8_3 | exon | 47129049 | 47129354 | 47129049 | ID=Msa1291650-mRNA-1:exon:13120;Parent=Msa1291650-mRNA-1 |
| chr8_3 | five_prime_UTR | 47126863 | 47127025 | 47126863 | ID=Msa1291650-mRNA-1:five_prime_utr;Parent=Msa1291650-mRNA-1 |
| chr8_3 | five_prime_UTR | 47128085 | 47128161 | 47128085 | ID=Msa1291650-mRNA-1:five_prime_utr;Parent=Msa1291650-mRNA-1 |
| chr8_3 | CDS | 47128162 | 47128224 | 47128162 | ID=Msa1291650-mRNA-1:cds;Parent=Msa1291650-mRNA-1 |
| chr8_3 | CDS | 47128916 | 47129041 | 47128916 | ID=Msa1291650-mRNA-1:cds;Parent=Msa1291650-mRNA-1 |
| chr8_3 | CDS | 47129049 | 47129354 | 47129049 | ID=Msa1291650-mRNA-1:cds;Parent=Msa1291650-mRNA-1 |
| Gene Sequence |
| Protein sequence |
