AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1291900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1291900 MtrunA17_Chr8g0366401 99.390 164 1 0 1 164 1 164 1.43e-118 333
Msa1291900 MtrunA17_Chr4g0062221 51.948 154 71 2 7 160 3 153 4.01e-50 160
Msa1291900 MtrunA17_Chr8g0368681 52.349 149 70 1 12 160 7 154 7.82e-50 159
Msa1291900 MtrunA17_Chr5g0440931 46.622 148 76 1 9 156 4 148 3.55e-43 141
Msa1291900 MtrunA17_Chr6g0460211 45.946 148 77 1 9 156 4 148 1.03e-42 140
Msa1291900 MtrunA17_Chr7g0254731 46.575 146 75 1 9 154 4 146 1.05e-42 140
Msa1291900 MtrunA17_Chr3g0093271 45.890 146 76 1 9 154 55 197 2.95e-41 138
Msa1291900 MtrunA17_Chr1g0188171 44.898 147 78 1 10 156 5 148 4.28e-40 134
Msa1291900 MtrunA17_Chr1g0166281 43.537 147 80 1 10 156 5 148 2.21e-39 132
Msa1291900 MtrunA17_Chr1g0185001 36.806 144 87 1 9 152 4 143 1.93e-30 108
Msa1291900 MtrunA17_Chr7g0274101 37.838 148 89 1 10 157 5 149 7.68e-29 105
Msa1291900 MtrunA17_Chr4g0033601 36.986 146 87 3 16 159 4 146 7.49e-28 102
Msa1291900 MtrunA17_Chr7g0256171 38.356 146 85 2 16 159 4 146 5.85e-27 100
Msa1291900 MtrunA17_Chr8g0392951 35.915 142 87 2 15 156 22 159 6.67e-26 97.8
Msa1291900 MtrunA17_Chr5g0434951 35.507 138 85 2 17 154 4 137 1.66e-25 96.3
Msa1291900 MtrunA17_Chr3g0100541 36.054 147 76 1 9 155 44 172 4.12e-25 96.3
Msa1291900 MtrunA17_Chr1g0161211 37.063 143 87 1 17 159 46 185 5.72e-25 96.3
Msa1291900 MtrunA17_Chr1g0161211 43.836 73 40 1 83 155 37 108 3.27e-12 62.8
Msa1291900 MtrunA17_Chr5g0398751 36.170 141 85 3 10 150 5 140 1.90e-24 93.6
Msa1291900 MtrunA17_Chr8g0391691 40.299 134 77 1 17 150 36 166 2.34e-24 94.7
Msa1291900 MtrunA17_Chr8g0391691 43.939 66 37 0 93 158 36 101 5.66e-12 62.0
Msa1291900 MtrunA17_Chr6g0482731 34.266 143 89 2 15 156 24 162 2.80e-23 91.3
Msa1291900 MtrunA17_Chr1g0169581 34.532 139 90 1 17 155 4 141 7.37e-23 89.4
Msa1291900 MtrunA17_Chr3g0111371 34.043 141 86 2 17 157 5 138 8.49e-23 89.0
Msa1291900 MtrunA17_Chr3g0111371 41.935 62 36 0 91 152 3 64 4.45e-11 58.2
Msa1291900 MtrunA17_Chr2g0329371 34.247 146 93 2 16 159 63 207 1.92e-22 90.1
Msa1291900 MtrunA17_Chr5g0409441 33.566 143 92 1 14 156 19 158 1.92e-22 89.0
Msa1291900 MtrunA17_Chr6g0459231 31.884 138 90 1 13 150 4 137 8.08e-22 86.7
Msa1291900 MtrunA17_Chr7g0225921 33.813 139 87 2 13 150 2 136 9.86e-22 86.3
Msa1291900 MtrunA17_Chr1g0157131 33.125 160 98 3 10 167 372 524 6.35e-21 89.7
Msa1291900 MtrunA17_Chr1g0200601 32.571 175 112 2 9 183 327 495 9.62e-21 89.0
Msa1291900 MtrunA17_Chr7g0256701 35.036 137 87 2 17 151 73 209 2.90e-20 84.3
Msa1291900 MtrunA17_Chr7g0245231 29.114 158 109 1 2 159 15 169 4.67e-20 82.8
Msa1291900 MtrunA17_Chr7g0245911 31.818 154 99 3 10 157 40 193 5.53e-20 83.2
Msa1291900 MtrunA17_Chr4g0064231 31.210 157 93 3 17 158 64 220 5.98e-20 84.0
Msa1291900 MtrunA17_Chr4g0044961 30.070 143 95 1 15 157 55 192 6.34e-20 83.2
Msa1291900 MtrunA17_Chr3g0100511 33.333 144 78 1 9 152 44 169 7.34e-20 82.4
Msa1291900 MtrunA17_Chr3g0100561 34.028 144 77 1 9 152 44 169 1.16e-19 82.0
Msa1291900 MtrunA17_Chr7g0267751 35.211 142 86 2 10 151 433 568 1.83e-19 85.5
Msa1291900 MtrunA17_Chr5g0448721 35.211 142 86 2 10 151 394 529 3.02e-19 84.7
Msa1291900 MtrunA17_Chr6g0450921 29.114 158 109 1 2 159 14 168 4.98e-19 80.1
Msa1291900 MtrunA17_Chr7g0242561 29.091 165 102 2 10 174 354 503 9.51e-19 83.6
Msa1291900 MtrunA17_Chr4g0057651 33.577 137 81 2 17 150 6 135 1.61e-18 78.2
Msa1291900 MtrunA17_Chr3g0131181 32.298 161 100 3 9 169 326 477 2.46e-18 82.0
Msa1291900 MtrunA17_Chr3g0116141 33.582 134 77 2 21 150 9 134 2.69e-18 77.4
Msa1291900 MtrunA17_Chr4g0057661 33.577 137 81 2 17 150 6 135 2.85e-18 77.4
Msa1291900 MtrunA17_Chr3g0116151 33.582 134 77 2 21 150 10 135 3.03e-18 77.4
Msa1291900 MtrunA17_Chr1g0169621 28.659 164 93 2 17 156 4 167 3.80e-18 77.8
Msa1291900 MtrunA17_Chr5g0397101 34.722 144 85 3 10 151 364 500 4.08e-18 81.6
Msa1291900 MtrunA17_Chr4g0057641 32.847 137 82 2 17 150 6 135 8.57e-18 76.3
Msa1291900 MtrunA17_Chr1g0170281 33.803 142 88 2 10 151 416 551 1.02e-17 80.5
Msa1291900 MtrunA17_Chr5g0402331 30.435 138 89 3 17 152 48 180 1.88e-17 76.6
Msa1291900 MtrunA17_Chr5g0444171 31.544 149 97 2 10 158 390 533 2.11e-17 79.3
Msa1291900 MtrunA17_Chr8g0387671 32.704 159 98 3 10 166 364 515 2.30e-17 79.3
Msa1291900 MtrunA17_Chr0c02g0489761 32.394 142 91 2 10 151 376 512 3.29e-17 79.0
Msa1291900 MtrunA17_Chr8g0351681 31.250 144 94 3 12 150 44 187 5.74e-17 75.5
Msa1291900 MtrunA17_Chr3g0098951 31.169 154 96 2 10 157 381 530 7.17e-17 77.8
Msa1291900 MtrunA17_Chr8g0385341 32.168 143 91 2 9 151 327 463 9.11e-17 77.8
Msa1291900 MtrunA17_Chr1g0176751 32.394 142 90 2 10 151 422 557 1.01e-16 77.4
Msa1291900 MtrunA17_Chr5g0402361 30.435 138 89 3 17 152 220 352 2.13e-16 76.3
Msa1291900 MtrunA17_Chr5g0402361 27.451 153 107 1 17 169 48 196 4.53e-15 72.4
Msa1291900 MtrunA17_Chr4g0074811 31.081 148 97 2 10 157 389 531 3.62e-16 75.9
Msa1291900 MtrunA17_Chr5g0441691 29.577 142 95 2 10 151 366 502 5.24e-16 75.5
Msa1291900 MtrunA17_Chr1g0160151 34.247 146 83 2 16 154 21 160 6.41e-16 72.0
Msa1291900 MtrunA17_Chr4g0059951 28.221 163 100 4 13 174 374 520 9.59e-16 74.7
Msa1291900 MtrunA17_Chr8g0373691 32.374 139 89 2 18 155 54 188 1.15e-15 71.6
Msa1291900 MtrunA17_Chr1g0176421 32.824 131 82 2 10 140 459 583 8.07e-15 72.0
Msa1291900 MtrunA17_Chr4g0068501 28.889 135 93 2 16 148 15 148 6.60e-14 66.6
Msa1291900 MtrunA17_Chr3g0100461 43.478 69 35 1 82 150 38 102 1.17e-13 64.7
Msa1291900 MtrunA17_Chr8g0369111 28.659 164 94 4 12 155 53 213 2.40e-13 66.2
Msa1291900 MtrunA17_Chr1g0173541 26.061 165 107 2 10 174 350 499 3.03e-13 67.4
Msa1291900 MtrunA17_Chr7g0245371 29.299 157 96 3 18 162 25 178 7.13e-13 63.9
Msa1291900 MtrunA17_Chr5g0405421 27.607 163 109 3 10 169 399 555 1.01e-12 65.9
Msa1291900 MtrunA17_Chr7g0257751 25.455 165 108 2 10 174 356 505 5.67e-12 63.5
Msa1291900 MtrunA17_Chr3g0100501 35.821 67 43 0 92 158 71 137 1.43e-11 59.7
Msa1291900 MtrunA17_Chr3g0100471 38.028 71 44 0 9 79 44 114 4.41e-11 57.8
Msa1291900 MtrunA17_Chr3g0125311 30.065 153 96 4 16 157 12 164 4.66e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1291900 AT1G32250.1 76.074 163 34 3 6 163 3 165 6.99e-83 243
Msa1291900 AT3G03000.1 76.875 160 35 1 4 163 7 164 2.71e-78 231
Msa1291900 AT1G18530.1 53.020 149 69 1 12 160 2 149 1.53e-48 155
Msa1291900 AT3G25600.1 52.027 148 70 1 13 160 8 154 2.45e-47 152
Msa1291900 AT3G56800.1 46.622 148 76 1 9 156 4 148 4.69e-43 141
Msa1291900 AT2G41110.1 46.622 148 76 1 9 156 4 148 4.69e-43 141
Msa1291900 AT2G27030.1 46.622 148 76 1 9 156 4 148 4.69e-43 141
Msa1291900 AT1G66410.1 46.622 148 76 1 9 156 4 148 5.07e-43 141
Msa1291900 AT5G37780.1 46.622 148 76 1 9 156 4 148 5.07e-43 141
Msa1291900 AT2G27030.3 47.260 146 74 1 9 154 4 146 1.12e-42 141
Msa1291900 AT3G43810.1 45.946 148 77 1 9 156 4 148 1.42e-42 140
Msa1291900 AT5G21274.1 45.270 148 78 1 9 156 4 148 5.36e-42 139
Msa1291900 AT3G43810.2 46.575 146 75 1 9 154 4 146 9.18e-42 140
Msa1291900 AT2G41110.2 43.750 160 75 2 9 156 4 160 2.15e-39 132
Msa1291900 AT4G14640.1 42.857 147 81 1 6 152 2 145 3.69e-39 131
Msa1291900 AT5G37780.2 42.331 163 76 2 9 156 4 163 9.11e-39 131
Msa1291900 AT3G22930.1 43.836 146 79 1 9 154 27 169 7.07e-38 129
Msa1291900 AT5G37780.3 39.655 174 76 2 9 156 4 174 4.66e-37 127
Msa1291900 AT1G66410.2 43.671 158 76 2 9 156 4 158 1.34e-36 125
Msa1291900 AT5G37780.4 45.238 126 66 1 31 156 13 135 7.13e-34 117
Msa1291900 AT3G51920.1 38.514 148 88 1 12 159 7 151 4.79e-33 116
Msa1291900 AT2G41100.7 39.535 172 90 2 3 160 52 223 5.79e-33 119
Msa1291900 AT2G41100.7 35.772 123 66 2 41 150 1 123 7.59e-18 79.7
Msa1291900 AT2G41100.7 41.772 79 46 0 9 87 148 226 6.44e-14 68.9
Msa1291900 AT2G41100.6 39.535 172 90 2 3 160 52 223 5.79e-33 119
Msa1291900 AT2G41100.6 35.772 123 66 2 41 150 1 123 7.59e-18 79.7
Msa1291900 AT2G41100.6 41.772 79 46 0 9 87 148 226 6.44e-14 68.9
Msa1291900 AT2G41100.3 39.535 172 90 2 3 160 52 223 5.79e-33 119
Msa1291900 AT2G41100.3 35.772 123 66 2 41 150 1 123 7.59e-18 79.7
Msa1291900 AT2G41100.3 41.772 79 46 0 9 87 148 226 6.44e-14 68.9
Msa1291900 AT2G41100.4 39.535 172 90 2 3 160 87 258 9.90e-33 120
Msa1291900 AT2G41100.4 40.000 155 80 2 9 150 4 158 2.43e-31 116
Msa1291900 AT2G41100.4 41.772 79 46 0 9 87 183 261 7.86e-14 68.9
Msa1291900 AT2G41100.1 39.535 172 90 2 3 160 87 258 9.90e-33 120
Msa1291900 AT2G41100.1 40.000 155 80 2 9 150 4 158 2.43e-31 116
Msa1291900 AT2G41100.1 41.772 79 46 0 9 87 183 261 7.86e-14 68.9
Msa1291900 AT4G14640.2 42.857 126 69 1 31 156 9 131 1.40e-32 114
Msa1291900 AT3G43810.4 46.087 115 59 1 42 156 1 112 2.04e-31 110
Msa1291900 AT3G43810.3 46.087 115 59 1 42 156 1 112 2.04e-31 110
Msa1291900 AT1G66410.4 46.087 115 59 1 42 156 1 112 2.33e-31 110
Msa1291900 AT1G66410.3 46.087 115 59 1 42 156 1 112 2.33e-31 110
Msa1291900 AT2G41090.1 41.667 144 78 1 9 152 4 141 1.27e-30 111
Msa1291900 AT1G05990.1 35.135 148 92 2 16 161 4 149 7.65e-27 100
Msa1291900 AT4G03290.1 34.932 146 93 1 16 159 4 149 9.74e-26 97.4
Msa1291900 AT2G43290.1 35.762 151 93 2 16 162 64 214 1.03e-25 99.0
Msa1291900 AT3G59440.1 37.086 151 89 3 13 161 47 193 5.64e-25 96.7
Msa1291900 AT1G18210.2 33.094 139 86 1 17 155 23 154 7.58e-25 95.5
Msa1291900 AT1G18210.1 33.094 139 86 1 17 155 23 154 7.58e-25 95.5
Msa1291900 AT5G37770.1 31.034 145 99 1 15 158 15 159 5.18e-24 93.2
Msa1291900 AT5G37770.2 31.034 145 99 1 15 158 15 159 5.18e-24 93.2
Msa1291900 AT1G12310.1 36.170 141 85 2 10 150 6 141 3.99e-23 90.5
Msa1291900 AT3G07490.1 37.671 146 86 2 16 159 4 146 5.44e-23 90.5
Msa1291900 AT4G14640.3 38.393 112 66 1 6 117 2 110 1.07e-22 88.6
Msa1291900 AT1G24620.1 35.897 156 91 2 14 169 34 180 2.09e-22 89.7
Msa1291900 AT1G24620.1 41.250 80 46 1 79 157 22 101 2.63e-11 60.5
Msa1291900 AT3G22930.2 39.815 108 62 1 9 116 27 131 3.24e-22 87.8
Msa1291900 AT4G12860.1 34.247 146 91 2 16 159 4 146 3.99e-22 88.2
Msa1291900 AT1G62820.1 34.752 141 87 2 10 150 6 141 6.03e-22 87.4
Msa1291900 AT1G66400.1 31.884 138 93 1 15 152 13 149 1.02e-21 87.0
Msa1291900 AT1G73630.1 29.286 140 92 1 17 156 20 152 2.48e-21 86.3
Msa1291900 AT4G09570.1 36.364 143 85 2 9 151 322 458 1.84e-20 88.6
Msa1291900 AT1G35670.1 36.364 143 85 2 9 151 323 459 2.27e-20 88.2
Msa1291900 AT2G15680.1 29.577 142 95 1 15 156 48 184 2.38e-20 84.3
Msa1291900 AT5G42380.1 32.847 137 90 1 15 151 47 181 2.59e-20 84.3
Msa1291900 AT4G37010.1 30.667 150 101 1 10 159 20 166 3.01e-20 83.6
Msa1291900 AT4G37010.2 30.667 150 101 1 10 159 24 170 3.24e-20 83.6
Msa1291900 AT3G50360.1 32.168 143 94 1 17 159 27 166 3.86e-20 83.6
Msa1291900 AT4G38230.1 32.500 160 102 2 10 169 178 331 3.97e-20 86.7
Msa1291900 AT4G38230.4 32.500 160 102 2 10 169 322 475 4.23e-20 87.4
Msa1291900 AT4G38230.3 32.500 160 102 2 10 169 322 475 4.23e-20 87.4
Msa1291900 AT4G38230.2 32.500 160 102 2 10 169 352 505 5.05e-20 87.4
Msa1291900 AT2G17290.1 35.915 142 85 2 10 151 383 518 5.05e-20 87.4
Msa1291900 AT2G17290.2 35.915 142 85 2 10 151 383 518 5.05e-20 87.4
Msa1291900 AT2G41100.2 36.641 131 69 2 44 160 3 133 1.90e-19 82.4
Msa1291900 AT2G41100.2 41.772 79 46 0 9 87 58 136 1.75e-14 69.3
Msa1291900 AT4G35310.2 33.125 160 98 3 10 169 395 545 2.75e-19 85.5
Msa1291900 AT4G35310.1 33.125 160 98 3 10 169 395 545 2.75e-19 85.5
Msa1291900 AT3G51850.1 29.091 165 102 2 10 174 352 501 7.50e-19 84.0
Msa1291900 AT1G76040.1 32.895 152 97 2 10 161 171 317 8.23e-19 82.8
Msa1291900 AT1G76040.4 32.895 152 97 2 10 161 171 317 8.23e-19 82.8
Msa1291900 AT3G50770.1 33.974 156 96 3 2 155 54 204 9.23e-19 80.5
Msa1291900 AT1G76040.2 32.895 152 97 2 10 161 409 555 1.47e-18 83.2
Msa1291900 AT2G38910.1 32.000 150 96 2 10 159 432 575 2.12e-18 82.8
Msa1291900 AT1G74740.1 28.916 166 101 4 10 174 357 506 9.76e-18 80.9
Msa1291900 AT5G19360.1 30.573 157 104 2 10 166 366 517 1.11e-17 80.9
Msa1291900 AT1G76640.1 30.405 148 94 2 8 151 13 155 1.77e-17 76.3
Msa1291900 AT3G10190.1 32.609 138 87 4 17 152 70 203 2.17e-17 77.0
Msa1291900 AT3G10190.1 36.145 83 51 2 76 156 52 134 2.00e-11 60.8
Msa1291900 AT3G03400.1 32.824 131 85 3 18 147 6 134 3.72e-17 74.7
Msa1291900 AT5G17470.1 27.407 135 93 2 18 150 3 134 5.93e-17 74.3
Msa1291900 AT2G17890.1 31.677 161 101 3 10 167 408 562 8.42e-17 78.2
Msa1291900 AT2G36180.1 28.058 139 100 0 18 156 1 139 1.70e-16 73.2
Msa1291900 AT4G04720.2 30.872 149 98 2 10 158 377 520 1.75e-16 77.4
Msa1291900 AT4G04720.1 30.872 149 98 2 10 158 377 520 1.75e-16 77.4
Msa1291900 AT5G23580.1 31.469 143 92 2 9 151 319 455 2.52e-16 76.6
Msa1291900 AT5G12180.1 31.690 142 92 2 10 151 371 507 2.58e-16 76.6
Msa1291900 AT1G61950.1 30.247 162 103 4 10 168 397 551 2.60e-16 76.6
Msa1291900 AT4G21940.2 31.081 148 97 2 10 157 399 541 2.64e-16 76.6
Msa1291900 AT4G21940.1 31.081 148 97 2 10 157 399 541 2.87e-16 76.6
Msa1291900 AT4G04740.4 30.769 143 94 2 8 150 364 501 3.80e-16 76.3
Msa1291900 AT4G04740.6 30.769 143 94 2 8 150 364 501 3.80e-16 76.3
Msa1291900 AT4G04740.5 30.769 143 94 2 8 150 364 501 3.80e-16 76.3
Msa1291900 AT4G04740.3 30.769 143 94 2 8 150 364 501 3.80e-16 76.3
Msa1291900 AT4G04740.1 30.769 143 94 2 8 150 364 501 3.80e-16 76.3
Msa1291900 AT4G04740.7 30.769 143 94 2 8 150 364 501 3.80e-16 76.3
Msa1291900 AT4G04695.1 31.333 150 96 3 10 158 329 472 7.12e-16 75.5
Msa1291900 AT2G41410.1 30.405 148 99 3 16 161 69 214 8.06e-16 73.2
Msa1291900 AT2G41100.5 42.500 80 46 0 9 88 4 83 8.17e-16 71.6
Msa1291900 AT2G41100.5 48.529 68 35 0 93 160 12 79 4.34e-15 69.7
Msa1291900 AT4G23650.1 33.333 144 87 3 10 151 376 512 8.72e-16 75.1
Msa1291900 AT2G31500.1 31.579 152 97 3 10 158 364 511 1.61e-15 74.3
Msa1291900 AT1G76650.1 29.730 148 100 1 4 151 30 173 1.89e-15 71.2
Msa1291900 AT1G76650.3 29.730 148 100 1 4 151 30 173 1.89e-15 71.2
Msa1291900 AT1G50700.1 29.054 148 100 2 10 157 371 513 1.93e-15 74.3
Msa1291900 AT3G20410.2 29.730 148 99 2 10 157 389 531 2.44e-15 73.9
Msa1291900 AT3G20410.1 29.730 148 99 2 10 157 389 531 2.44e-15 73.9
Msa1291900 AT3G10660.2 30.986 142 92 2 10 151 484 619 2.62e-15 73.9
Msa1291900 AT3G10660.1 30.986 142 92 2 10 151 484 619 2.62e-15 73.9
Msa1291900 AT5G04870.1 29.299 157 103 3 10 165 448 597 2.89e-15 73.9
Msa1291900 AT3G03410.1 29.545 132 81 1 19 150 4 123 8.21e-15 68.6
Msa1291900 AT4G04700.1 31.915 141 91 2 10 150 329 464 2.09e-14 71.2
Msa1291900 AT4G36070.2 29.193 161 105 3 10 167 371 525 2.20e-14 71.2
Msa1291900 AT4G36070.1 29.814 161 104 4 10 167 371 525 2.29e-14 71.2
Msa1291900 AT4G04710.2 30.556 144 91 3 10 151 330 466 1.26e-13 68.9
Msa1291900 AT4G04710.1 30.556 144 91 3 10 151 343 479 1.32e-13 68.9
Msa1291900 AT1G18890.1 26.506 166 105 4 10 174 361 510 1.32e-13 68.9
Msa1291900 AT4G04710.3 30.556 144 91 3 10 151 316 452 1.52e-13 68.6
Msa1291900 AT3G51850.2 28.244 131 90 1 10 140 352 478 1.83e-13 68.6
Msa1291900 AT2G41860.2 26.667 165 106 2 10 174 352 501 1.95e-13 68.6
Msa1291900 AT2G41860.1 26.667 165 106 2 10 174 352 501 2.11e-13 68.2
Msa1291900 AT5G66210.1 30.719 153 97 3 10 159 362 508 2.98e-13 67.8
Msa1291900 AT5G66210.2 30.719 153 97 3 10 159 362 508 2.98e-13 67.8
Msa1291900 AT3G57530.1 28.743 167 99 5 10 174 361 509 6.38e-13 67.0
Msa1291900 AT1G76650.2 30.405 148 89 3 4 151 30 163 8.85e-13 63.9
Msa1291900 AT5G44460.1 30.667 150 95 3 18 158 29 178 1.17e-12 63.9
Msa1291900 AT4G04710.4 30.137 146 91 4 10 151 343 481 5.66e-12 63.9
Msa1291900 AT4G20780.1 29.012 162 98 2 18 162 30 191 8.62e-12 61.6
Msa1291900 AT1G50700.2 25.287 174 99 3 10 157 371 539 1.22e-11 63.2
Msa1291900 AT4G04740.2 28.467 137 93 2 4 140 360 491 1.57e-11 62.8
Msa1291900 AT5G12480.1 25.904 166 107 3 10 174 357 507 2.36e-11 62.4
Msa1291900 AT5G12480.2 25.904 166 107 3 10 174 263 413 2.40e-11 62.4
Msa1291900 AT4G26470.1 24.375 160 104 2 12 155 53 211 2.91e-11 60.8
Msa1291900 AT4G26470.3 24.375 160 104 2 12 155 116 274 4.04e-11 61.2
Msa1291900 AT5G07320.1 27.338 139 92 1 12 150 32 161 5.44e-11 61.2
Msa1291900 AT5G61810.1 28.571 133 86 2 18 150 37 160 5.70e-11 61.2

Find 66 sgRNAs with CRISPR-Local

Find 289 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGCTCATTCGATGGCGAAAT+TGG 0.147589 8_3:+47482832 Msa1291900:CDS
ATAGATGTACACCCCGTATA+TGG 0.259365 8_3:+47484637 Msa1291900:three_prime_UTR
AGTTTAGTTCTAACTGTGTT+AGG 0.285909 8_3:-47482586 None:intergenic
CATCTTGGTATCCCCATATA+CGG 0.299913 8_3:-47484650 None:intergenic
ATCAGCTTCCTTTATCATTC+CGG 0.310862 8_3:-47482882 None:intergenic
AATGATAAAGGAAGCTGATA+TGG 0.347682 8_3:+47482886 Msa1291900:CDS
AGCAGCTACGGCAGCTGTTT+AGG 0.355154 8_3:+47482765 Msa1291900:CDS
GCCTTCAACCAATCCATGTT+TGG 0.357217 8_3:-47484353 None:intergenic
GCAATGTTGTGTGATGAAAT+AGG 0.361274 8_3:+47484374 Msa1291900:CDS
CTCGGAGTTTGTTGCGTTGG+TGG 0.393848 8_3:+47482703 Msa1291900:CDS
TGTTTGATCGGGATGGGAAC+GGG 0.402665 8_3:+47482789 Msa1291900:CDS
TCCTTTCCTCAGATAGGAAA+AGG 0.414752 8_3:-47484508 None:intergenic
AACTCCCTTCTCCGTTCGCT+TGG 0.424274 8_3:+47482605 Msa1291900:CDS
CCTTCTAACTGCTCCGCGCT+TGG 0.431687 8_3:-47482635 None:intergenic
GTTTAGTTCTAACTGTGTTA+GGG 0.435285 8_3:-47482585 None:intergenic
GGAGTTGACCGGAATGATAA+AGG 0.436113 8_3:+47482874 Msa1291900:CDS
GCTCATTCGATGGCGAAATT+GGG 0.438523 8_3:+47482833 Msa1291900:CDS
CCAAGCGCGGAGCAGTTAGA+AGG 0.441339 8_3:+47482635 Msa1291900:CDS
TTACTCAATAAGAAATAAAC+AGG 0.443327 8_3:-47484612 None:intergenic
TAGATGTACACCCCGTATAT+GGG 0.454422 8_3:+47484638 Msa1291900:three_prime_UTR
CCGTAGCTGCTCCTCCGTGT+AGG 0.455735 8_3:-47482753 None:intergenic
CGTAGCTGCTCCTCCGTGTA+GGG 0.455738 8_3:-47482752 None:intergenic
GTTTATCACGGCAGCGGAGT+TGG 0.457314 8_3:+47482811 Msa1291900:CDS
GGTGGCGCCGGAGTTGTTGC+CGG 0.458089 8_3:+47482721 Msa1291900:CDS
AGCTGTTTAGGATGTTTGAT+CGG 0.458136 8_3:+47482777 Msa1291900:CDS
GTTTGTTGCGTTGGTGGCGC+CGG 0.461261 8_3:+47482709 Msa1291900:CDS
GAAATTGGGACATGCTTTAA+CGG 0.463358 8_3:+47482847 Msa1291900:CDS
GCTGTTTAGGATGTTTGATC+GGG 0.475869 8_3:+47482778 Msa1291900:CDS
TAACGGATTGATAGAATTCT+CGG 0.480262 8_3:+47482685 Msa1291900:CDS
TTCGAAGGCCAAACATGGAT+TGG 0.486850 8_3:+47484345 Msa1291900:CDS
GACTTTGCCGGCAACAACTC+CGG 0.488122 8_3:-47482728 None:intergenic
ATGTTTGATCGGGATGGGAA+CGG 0.488859 8_3:+47482788 Msa1291900:CDS
GCCAAACATGGATTGGTTGA+AGG 0.495278 8_3:+47484352 Msa1291900:CDS
TCCGTGTAGGGAGACTTTGC+CGG 0.497634 8_3:-47482740 None:intergenic
ATCTTGGTATCCCCATATAC+GGG 0.500410 8_3:-47484649 None:intergenic
CCTGGCTCCTTTCCTCAGAT+AGG 0.501876 8_3:-47484514 None:intergenic
CAATGTTGTGTGATGAAATA+GGG 0.507872 8_3:+47484375 Msa1291900:CDS
CCTATCTGAGGAAAGGAGCC+AGG 0.512040 8_3:+47484514 Msa1291900:three_prime_UTR
TTTAGGATGTTTGATCGGGA+TGG 0.512208 8_3:+47482782 Msa1291900:CDS
TTAGGATGTTTGATCGGGAT+GGG 0.515191 8_3:+47482783 Msa1291900:CDS
ATTCTCGGAGTTTGTTGCGT+TGG 0.516039 8_3:+47482700 Msa1291900:CDS
GTTCGTCGTCTAATTTCACT+TGG 0.534691 8_3:-47482508 None:intergenic
TTAACGGCGGAGGAGTTGAC+CGG 0.536669 8_3:+47482863 Msa1291900:CDS
TAAACCAAGCGAACGGAGAA+GGG 0.538024 8_3:-47482609 None:intergenic
AGCGGAGTTGGCTCATTCGA+TGG 0.541873 8_3:+47482823 Msa1291900:CDS
TACTGATGGAGCTAGTGCTT+AGG 0.541980 8_3:+47484448 Msa1291900:three_prime_UTR
TTAAACCAAGCGAACGGAGA+AGG 0.543878 8_3:-47482610 None:intergenic
GTTGTTTCCTGCAGATTCGA+AGG 0.547875 8_3:+47484330 Msa1291900:intron
GACTGGTTGTAAACTACTGA+TGG 0.548289 8_3:+47484434 Msa1291900:exon
GGGACATGCTTTAACGGCGG+AGG 0.548601 8_3:+47482853 Msa1291900:CDS
CCTTTCCTCAGATAGGAAAA+GGG 0.563857 8_3:-47484507 None:intergenic
AGAGCAGACACAAACAATAA+CGG 0.570896 8_3:+47482668 Msa1291900:CDS
CGTTGTTTCGATCAAATGAT+CGG 0.580857 8_3:-47482556 None:intergenic
GCAGATTCGAAGGCCAAACA+TGG 0.584496 8_3:+47484340 Msa1291900:intron
GAAGCTGATATGGATGGTGA+TGG 0.585363 8_3:+47482896 Msa1291900:CDS
GGATGGGAACGGGTTTATCA+CGG 0.588947 8_3:+47482799 Msa1291900:CDS
AAATGACTCAACGAAGGGAA+AGG 0.596659 8_3:-47484404 None:intergenic
CCTACACGGAGGAGCAGCTA+CGG 0.598678 8_3:+47482753 Msa1291900:CDS
AGATGTACACCCCGTATATG+GGG 0.615678 8_3:+47484639 Msa1291900:three_prime_UTR
AAGCTGATATGGATGGTGAT+GGG 0.620375 8_3:+47482897 Msa1291900:CDS
GAACGGGTTTATCACGGCAG+CGG 0.638183 8_3:+47482805 Msa1291900:CDS
ATTGGGACATGCTTTAACGG+CGG 0.651338 8_3:+47482850 Msa1291900:CDS
ATAAAGGAAGCTGATATGGA+TGG 0.659744 8_3:+47482890 Msa1291900:CDS
GCTTGGTTTAAAACCAAGCG+CGG 0.668627 8_3:+47482622 Msa1291900:CDS
TCATTTGATCGAAACAACGA+CGG 0.715484 8_3:+47482560 Msa1291900:CDS
TCTTGGTATCCCCATATACG+GGG 0.721859 8_3:-47484648 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GATAATTTATTAATTTTCAT+TGG + chr8_3:47483141-47483160 Msa1291900:intron 10.0%
!!! AATTATACAACATATTTTTT+AGG - chr8_3:47483855-47483874 None:intergenic 10.0%
!!! TTAATTTACTATTTTGTTTT+AGG + chr8_3:47483993-47484012 Msa1291900:intron 10.0%
!!! TAATTTACTATTTTGTTTTA+GGG + chr8_3:47483994-47484013 Msa1291900:intron 10.0%
!!! GATAATTTATTAATTTTCAT+TGG + chr8_3:47483141-47483160 Msa1291900:intron 10.0%
!!! AATTATACAACATATTTTTT+AGG - chr8_3:47483855-47483874 None:intergenic 10.0%
!!! TTAATTTACTATTTTGTTTT+AGG + chr8_3:47483993-47484012 Msa1291900:intron 10.0%
!!! TAATTTACTATTTTGTTTTA+GGG + chr8_3:47483994-47484013 Msa1291900:intron 10.0%
!!! GGATTAAATTATTTTCTATA+TGG - chr8_3:47483223-47483242 None:intergenic 15.0%
!! TTGTATAGTTTAAAAATGAT+AGG + chr8_3:47483407-47483426 Msa1291900:intron 15.0%
!! TGTATAGTTTAAAAATGATA+GGG + chr8_3:47483408-47483427 Msa1291900:intron 15.0%
!!! ATATTTTTTAGGAAGAAATA+TGG - chr8_3:47483844-47483863 None:intergenic 15.0%
!! AATCAATCAAATAAAACAAA+GGG - chr8_3:47484189-47484208 None:intergenic 15.0%
!!! GGATTAAATTATTTTCTATA+TGG - chr8_3:47483223-47483242 None:intergenic 15.0%
!! TTGTATAGTTTAAAAATGAT+AGG + chr8_3:47483407-47483426 Msa1291900:intron 15.0%
!! TGTATAGTTTAAAAATGATA+GGG + chr8_3:47483408-47483427 Msa1291900:intron 15.0%
!!! ATATTTTTTAGGAAGAAATA+TGG - chr8_3:47483844-47483863 None:intergenic 15.0%
!! AATCAATCAAATAAAACAAA+GGG - chr8_3:47484189-47484208 None:intergenic 15.0%
!!! TTATCTTTTGCTGTAAAAAT+AGG + chr8_3:47483284-47483303 Msa1291900:intron 20.0%
!! TTGGATAAACAATTTATTTG+TGG - chr8_3:47483370-47483389 None:intergenic 20.0%
!! ATATTCTATTGAATACATCA+AGG - chr8_3:47483512-47483531 None:intergenic 20.0%
!!! ACTTTGAAATTTCCTTTTTT+AGG + chr8_3:47484125-47484144 Msa1291900:intron 20.0%
!! GAATCAATCAAATAAAACAA+AGG - chr8_3:47484190-47484209 None:intergenic 20.0%
!! TTACTCAATAAGAAATAAAC+AGG - chr8_3:47484615-47484634 None:intergenic 20.0%
!!! TTATCTTTTGCTGTAAAAAT+AGG + chr8_3:47483284-47483303 Msa1291900:intron 20.0%
!! TTGGATAAACAATTTATTTG+TGG - chr8_3:47483370-47483389 None:intergenic 20.0%
!! ATATTCTATTGAATACATCA+AGG - chr8_3:47483512-47483531 None:intergenic 20.0%
!!! ACTTTGAAATTTCCTTTTTT+AGG + chr8_3:47484125-47484144 Msa1291900:intron 20.0%
!! GAATCAATCAAATAAAACAA+AGG - chr8_3:47484190-47484209 None:intergenic 20.0%
!! TTACTCAATAAGAAATAAAC+AGG - chr8_3:47484615-47484634 None:intergenic 20.0%
! TCTCTTTATCTCTTTATTAG+AGG + chr8_3:47482997-47483016 Msa1291900:intron 25.0%
!! TTTTCTTTTCTTTTCATGAG+GGG - chr8_3:47483244-47483263 None:intergenic 25.0%
!! CTTTTCTTTTCTTTTCATGA+GGG - chr8_3:47483245-47483264 None:intergenic 25.0%
!! TCTTTTCTTTTCTTTTCATG+AGG - chr8_3:47483246-47483265 None:intergenic 25.0%
!! AGTTTGATATCATTGTTTCT+AGG + chr8_3:47483434-47483453 Msa1291900:intron 25.0%
!!! GTTTGATATCATTGTTTCTA+GGG + chr8_3:47483435-47483454 Msa1291900:intron 25.0%
! AAGGAAAATGAAACTCAATT+TGG - chr8_3:47483493-47483512 None:intergenic 25.0%
! CACACTTTGTAAATCTTTAA+TGG + chr8_3:47483536-47483555 Msa1291900:intron 25.0%
! CTTAGAAAAAAAAATTACGC+TGG - chr8_3:47483792-47483811 None:intergenic 25.0%
!!! AAACACTTTTTATGCTTTTG+AGG - chr8_3:47484100-47484119 None:intergenic 25.0%
! ATGTTACAGTGAATTGAAAA+TGG - chr8_3:47484235-47484254 None:intergenic 25.0%
! AAATATTTCTCCAATGACTT+TGG + chr8_3:47484278-47484297 Msa1291900:intron 25.0%
! TCTCTTTATCTCTTTATTAG+AGG + chr8_3:47482997-47483016 Msa1291900:intron 25.0%
!! TTTTCTTTTCTTTTCATGAG+GGG - chr8_3:47483244-47483263 None:intergenic 25.0%
!! CTTTTCTTTTCTTTTCATGA+GGG - chr8_3:47483245-47483264 None:intergenic 25.0%
!! TCTTTTCTTTTCTTTTCATG+AGG - chr8_3:47483246-47483265 None:intergenic 25.0%
!! AGTTTGATATCATTGTTTCT+AGG + chr8_3:47483434-47483453 Msa1291900:intron 25.0%
!!! GTTTGATATCATTGTTTCTA+GGG + chr8_3:47483435-47483454 Msa1291900:intron 25.0%
! AAGGAAAATGAAACTCAATT+TGG - chr8_3:47483493-47483512 None:intergenic 25.0%
! CACACTTTGTAAATCTTTAA+TGG + chr8_3:47483536-47483555 Msa1291900:intron 25.0%
! CTTAGAAAAAAAAATTACGC+TGG - chr8_3:47483792-47483811 None:intergenic 25.0%
!!! AAACACTTTTTATGCTTTTG+AGG - chr8_3:47484100-47484119 None:intergenic 25.0%
! ATGTTACAGTGAATTGAAAA+TGG - chr8_3:47484235-47484254 None:intergenic 25.0%
! AAATATTTCTCCAATGACTT+TGG + chr8_3:47484278-47484297 Msa1291900:intron 25.0%
!! GTTTAGTTCTAACTGTGTTA+GGG - chr8_3:47482588-47482607 None:intergenic 30.0%
!! AGTTTAGTTCTAACTGTGTT+AGG - chr8_3:47482589-47482608 None:intergenic 30.0%
!! TAACGGATTGATAGAATTCT+CGG + chr8_3:47482685-47482704 Msa1291900:CDS 30.0%
AATGATAAAGGAAGCTGATA+TGG + chr8_3:47482886-47482905 Msa1291900:CDS 30.0%
!!! TGCTGCTTTTGATAATTCTT+GGG + chr8_3:47482958-47482977 Msa1291900:CDS 30.0%
TCGGTAGATAAGTTCAAATA+AGG - chr8_3:47483074-47483093 None:intergenic 30.0%
TAGTCACACAACACTTATTT+CGG - chr8_3:47483093-47483112 None:intergenic 30.0%
!! TTGTTTCTAGGGACTAAATA+AGG + chr8_3:47483446-47483465 Msa1291900:intron 30.0%
! GGTCTCTATCAATTTTCTTT+CGG - chr8_3:47483472-47483491 None:intergenic 30.0%
!! TGTGTAAACTCTTAGTCTTA+AGG + chr8_3:47483740-47483759 Msa1291900:intron 30.0%
! ACTTGACTATTTTGTAGTAC+TGG + chr8_3:47483950-47483969 Msa1291900:intron 30.0%
!!! TGTTTTAGGGAAATGTTAAC+CGG + chr8_3:47484007-47484026 Msa1291900:intron 30.0%
CAATGTTGTGTGATGAAATA+GGG + chr8_3:47484375-47484394 Msa1291900:CDS 30.0%
TCACAAGATCCAAAAATTGA+TGG - chr8_3:47484540-47484559 None:intergenic 30.0%
!! GTTTAGTTCTAACTGTGTTA+GGG - chr8_3:47482588-47482607 None:intergenic 30.0%
!! AGTTTAGTTCTAACTGTGTT+AGG - chr8_3:47482589-47482608 None:intergenic 30.0%
!! TAACGGATTGATAGAATTCT+CGG + chr8_3:47482685-47482704 Msa1291900:CDS 30.0%
AATGATAAAGGAAGCTGATA+TGG + chr8_3:47482886-47482905 Msa1291900:CDS 30.0%
!!! TGCTGCTTTTGATAATTCTT+GGG + chr8_3:47482958-47482977 Msa1291900:CDS 30.0%
TCGGTAGATAAGTTCAAATA+AGG - chr8_3:47483074-47483093 None:intergenic 30.0%
TAGTCACACAACACTTATTT+CGG - chr8_3:47483093-47483112 None:intergenic 30.0%
!! TTGTTTCTAGGGACTAAATA+AGG + chr8_3:47483446-47483465 Msa1291900:intron 30.0%
! GGTCTCTATCAATTTTCTTT+CGG - chr8_3:47483472-47483491 None:intergenic 30.0%
!! TGTGTAAACTCTTAGTCTTA+AGG + chr8_3:47483740-47483759 Msa1291900:intron 30.0%
! ACTTGACTATTTTGTAGTAC+TGG + chr8_3:47483950-47483969 Msa1291900:intron 30.0%
!!! TGTTTTAGGGAAATGTTAAC+CGG + chr8_3:47484007-47484026 Msa1291900:intron 30.0%
CAATGTTGTGTGATGAAATA+GGG + chr8_3:47484375-47484394 Msa1291900:CDS 30.0%
TCACAAGATCCAAAAATTGA+TGG - chr8_3:47484540-47484559 None:intergenic 30.0%
! CGTTGTTTCGATCAAATGAT+CGG - chr8_3:47482559-47482578 None:intergenic 35.0%
TCATTTGATCGAAACAACGA+CGG + chr8_3:47482560-47482579 Msa1291900:CDS 35.0%
!!! TTGGTTTTAAACCAAGCGAA+CGG - chr8_3:47482619-47482638 None:intergenic 35.0%
AGAGCAGACACAAACAATAA+CGG + chr8_3:47482668-47482687 Msa1291900:CDS 35.0%
! AGCTGTTTAGGATGTTTGAT+CGG + chr8_3:47482777-47482796 Msa1291900:CDS 35.0%
GAAATTGGGACATGCTTTAA+CGG + chr8_3:47482847-47482866 Msa1291900:CDS 35.0%
ATCAGCTTCCTTTATCATTC+CGG - chr8_3:47482885-47482904 None:intergenic 35.0%
ATAAAGGAAGCTGATATGGA+TGG + chr8_3:47482890-47482909 Msa1291900:CDS 35.0%
!!! CTGCTGCTTTTGATAATTCT+TGG + chr8_3:47482957-47482976 Msa1291900:CDS 35.0%
ATCCAAATAAGCTTCTCACT+AGG + chr8_3:47483384-47483403 Msa1291900:intron 35.0%
AACCTAGTGAGAAGCTTATT+TGG - chr8_3:47483389-47483408 None:intergenic 35.0%
GGATATAGCTCATCAAAGTT+AGG - chr8_3:47483771-47483790 None:intergenic 35.0%
TGATTTCTTAACCAGTACCT+CGG - chr8_3:47484038-47484057 None:intergenic 35.0%
CTGGTTAAGGAACCTAAAAA+AGG - chr8_3:47484140-47484159 None:intergenic 35.0%
AGCTGGCAACAAATATGTTT+CGG - chr8_3:47484305-47484324 None:intergenic 35.0%
GCAATGTTGTGTGATGAAAT+AGG + chr8_3:47484374-47484393 Msa1291900:CDS 35.0%
CACAAAAATGACTCAACGAA+GGG - chr8_3:47484412-47484431 None:intergenic 35.0%
! CGTTGTTTCGATCAAATGAT+CGG - chr8_3:47482559-47482578 None:intergenic 35.0%
TCATTTGATCGAAACAACGA+CGG + chr8_3:47482560-47482579 Msa1291900:CDS 35.0%
!!! TTGGTTTTAAACCAAGCGAA+CGG - chr8_3:47482619-47482638 None:intergenic 35.0%
AGAGCAGACACAAACAATAA+CGG + chr8_3:47482668-47482687 Msa1291900:CDS 35.0%
! AGCTGTTTAGGATGTTTGAT+CGG + chr8_3:47482777-47482796 Msa1291900:CDS 35.0%
GAAATTGGGACATGCTTTAA+CGG + chr8_3:47482847-47482866 Msa1291900:CDS 35.0%
ATCAGCTTCCTTTATCATTC+CGG - chr8_3:47482885-47482904 None:intergenic 35.0%
ATAAAGGAAGCTGATATGGA+TGG + chr8_3:47482890-47482909 Msa1291900:CDS 35.0%
!!! CTGCTGCTTTTGATAATTCT+TGG + chr8_3:47482957-47482976 Msa1291900:CDS 35.0%
ATCCAAATAAGCTTCTCACT+AGG + chr8_3:47483384-47483403 Msa1291900:intron 35.0%
AACCTAGTGAGAAGCTTATT+TGG - chr8_3:47483389-47483408 None:intergenic 35.0%
GGATATAGCTCATCAAAGTT+AGG - chr8_3:47483771-47483790 None:intergenic 35.0%
TGATTTCTTAACCAGTACCT+CGG - chr8_3:47484038-47484057 None:intergenic 35.0%
CTGGTTAAGGAACCTAAAAA+AGG - chr8_3:47484140-47484159 None:intergenic 35.0%
AGCTGGCAACAAATATGTTT+CGG - chr8_3:47484305-47484324 None:intergenic 35.0%
GCAATGTTGTGTGATGAAAT+AGG + chr8_3:47484374-47484393 Msa1291900:CDS 35.0%
CACAAAAATGACTCAACGAA+GGG - chr8_3:47484412-47484431 None:intergenic 35.0%
GTTCGTCGTCTAATTTCACT+TGG - chr8_3:47482511-47482530 None:intergenic 40.0%
! GCTGTTTAGGATGTTTGATC+GGG + chr8_3:47482778-47482797 Msa1291900:CDS 40.0%
! TTTAGGATGTTTGATCGGGA+TGG + chr8_3:47482782-47482801 Msa1291900:CDS 40.0%
TTAGGATGTTTGATCGGGAT+GGG + chr8_3:47482783-47482802 Msa1291900:CDS 40.0%
AAGCTGATATGGATGGTGAT+GGG + chr8_3:47482897-47482916 Msa1291900:CDS 40.0%
! TGATGGGATGATCAGTTTTC+AGG + chr8_3:47482913-47482932 Msa1291900:CDS 40.0%
TCAACTCACGATGACAATGT+TGG + chr8_3:47483691-47483710 Msa1291900:intron 40.0%
GGAGACCACTTACATACATT+CGG + chr8_3:47483904-47483923 Msa1291900:intron 40.0%
GAGACCACTTACATACATTC+GGG + chr8_3:47483905-47483924 Msa1291900:intron 40.0%
ATGACCCGAATGTATGTAAG+TGG - chr8_3:47483912-47483931 None:intergenic 40.0%
ATTTCTTAACCAGTACCTCG+GGG - chr8_3:47484036-47484055 None:intergenic 40.0%
GATTTCTTAACCAGTACCTC+GGG - chr8_3:47484037-47484056 None:intergenic 40.0%
ATGTTTCGGTCCAAAGTCAT+TGG - chr8_3:47484291-47484310 None:intergenic 40.0%
AAATGACTCAACGAAGGGAA+AGG - chr8_3:47484407-47484426 None:intergenic 40.0%
CCACAAAAATGACTCAACGA+AGG - chr8_3:47484413-47484432 None:intergenic 40.0%
!!! CCTTCGTTGAGTCATTTTTG+TGG + chr8_3:47484410-47484429 Msa1291900:CDS 40.0%
!!! TGAGTCATTTTTGTGGAGAC+TGG + chr8_3:47484417-47484436 Msa1291900:CDS 40.0%
! GACTGGTTGTAAACTACTGA+TGG + chr8_3:47484434-47484453 Msa1291900:exon 40.0%
CCTTTCCTCAGATAGGAAAA+GGG - chr8_3:47484510-47484529 None:intergenic 40.0%
TCCTTTCCTCAGATAGGAAA+AGG - chr8_3:47484511-47484530 None:intergenic 40.0%
! AGATCCAAAAATTGATGGCC+TGG - chr8_3:47484535-47484554 None:intergenic 40.0%
ATAGATGTACACCCCGTATA+TGG + chr8_3:47484637-47484656 Msa1291900:three_prime_UTR 40.0%
TAGATGTACACCCCGTATAT+GGG + chr8_3:47484638-47484657 Msa1291900:three_prime_UTR 40.0%
!! TGGTGTTGCTTCTTGTTCAT+TGG - chr8_3:47482491-47482510 None:intergenic 40.0%
GTTCGTCGTCTAATTTCACT+TGG - chr8_3:47482511-47482530 None:intergenic 40.0%
! GCTGTTTAGGATGTTTGATC+GGG + chr8_3:47482778-47482797 Msa1291900:CDS 40.0%
! TTTAGGATGTTTGATCGGGA+TGG + chr8_3:47482782-47482801 Msa1291900:CDS 40.0%
TTAGGATGTTTGATCGGGAT+GGG + chr8_3:47482783-47482802 Msa1291900:CDS 40.0%
AAGCTGATATGGATGGTGAT+GGG + chr8_3:47482897-47482916 Msa1291900:CDS 40.0%
! TGATGGGATGATCAGTTTTC+AGG + chr8_3:47482913-47482932 Msa1291900:CDS 40.0%
TCAACTCACGATGACAATGT+TGG + chr8_3:47483691-47483710 Msa1291900:intron 40.0%
GGAGACCACTTACATACATT+CGG + chr8_3:47483904-47483923 Msa1291900:intron 40.0%
GAGACCACTTACATACATTC+GGG + chr8_3:47483905-47483924 Msa1291900:intron 40.0%
ATGACCCGAATGTATGTAAG+TGG - chr8_3:47483912-47483931 None:intergenic 40.0%
ATTTCTTAACCAGTACCTCG+GGG - chr8_3:47484036-47484055 None:intergenic 40.0%
GATTTCTTAACCAGTACCTC+GGG - chr8_3:47484037-47484056 None:intergenic 40.0%
ATGTTTCGGTCCAAAGTCAT+TGG - chr8_3:47484291-47484310 None:intergenic 40.0%
AAATGACTCAACGAAGGGAA+AGG - chr8_3:47484407-47484426 None:intergenic 40.0%
CCACAAAAATGACTCAACGA+AGG - chr8_3:47484413-47484432 None:intergenic 40.0%
!!! CCTTCGTTGAGTCATTTTTG+TGG + chr8_3:47484410-47484429 Msa1291900:CDS 40.0%
!!! TGAGTCATTTTTGTGGAGAC+TGG + chr8_3:47484417-47484436 Msa1291900:CDS 40.0%
! GACTGGTTGTAAACTACTGA+TGG + chr8_3:47484434-47484453 Msa1291900:exon 40.0%
CCTTTCCTCAGATAGGAAAA+GGG - chr8_3:47484510-47484529 None:intergenic 40.0%
TCCTTTCCTCAGATAGGAAA+AGG - chr8_3:47484511-47484530 None:intergenic 40.0%
! AGATCCAAAAATTGATGGCC+TGG - chr8_3:47484535-47484554 None:intergenic 40.0%
ATAGATGTACACCCCGTATA+TGG + chr8_3:47484637-47484656 Msa1291900:three_prime_UTR 40.0%
TAGATGTACACCCCGTATAT+GGG + chr8_3:47484638-47484657 Msa1291900:three_prime_UTR 40.0%
TAAACCAAGCGAACGGAGAA+GGG - chr8_3:47482612-47482631 None:intergenic 45.0%
TTAAACCAAGCGAACGGAGA+AGG - chr8_3:47482613-47482632 None:intergenic 45.0%
! GCTTGGTTTAAAACCAAGCG+CGG + chr8_3:47482622-47482641 Msa1291900:CDS 45.0%
!! ATTCTCGGAGTTTGTTGCGT+TGG + chr8_3:47482700-47482719 Msa1291900:CDS 45.0%
ATGTTTGATCGGGATGGGAA+CGG + chr8_3:47482788-47482807 Msa1291900:CDS 45.0%
GCTCATTCGATGGCGAAATT+GGG + chr8_3:47482833-47482852 Msa1291900:CDS 45.0%
ATTGGGACATGCTTTAACGG+CGG + chr8_3:47482850-47482869 Msa1291900:CDS 45.0%
GGAGTTGACCGGAATGATAA+AGG + chr8_3:47482874-47482893 Msa1291900:CDS 45.0%
GAAGCTGATATGGATGGTGA+TGG + chr8_3:47482896-47482915 Msa1291900:CDS 45.0%
GTGACTGCCTCACTTGTAAT+TGG + chr8_3:47483883-47483902 Msa1291900:intron 45.0%
GTGGTCTCCAATTACAAGTG+AGG - chr8_3:47483893-47483912 None:intergenic 45.0%
TTTCTTAACCAGTACCTCGG+GGG - chr8_3:47484035-47484054 None:intergenic 45.0%
GCAGGAAACAACAAGTTAGC+TGG - chr8_3:47484322-47484341 None:intergenic 45.0%
! GTTGTTTCCTGCAGATTCGA+AGG + chr8_3:47484330-47484349 Msa1291900:intron 45.0%
TTCGAAGGCCAAACATGGAT+TGG + chr8_3:47484345-47484364 Msa1291900:CDS 45.0%
!! GCCAAACATGGATTGGTTGA+AGG + chr8_3:47484352-47484371 Msa1291900:CDS 45.0%
GCCTTCAACCAATCCATGTT+TGG - chr8_3:47484356-47484375 None:intergenic 45.0%
TACTGATGGAGCTAGTGCTT+AGG + chr8_3:47484448-47484467 Msa1291900:three_prime_UTR 45.0%
! TCGTACCCTTTTCCTATCTG+AGG + chr8_3:47484502-47484521 Msa1291900:three_prime_UTR 45.0%
! CCCTTTTCCTATCTGAGGAA+AGG + chr8_3:47484507-47484526 Msa1291900:three_prime_UTR 45.0%
AGATGTACACCCCGTATATG+GGG + chr8_3:47484639-47484658 Msa1291900:three_prime_UTR 45.0%
TAAACCAAGCGAACGGAGAA+GGG - chr8_3:47482612-47482631 None:intergenic 45.0%
TTAAACCAAGCGAACGGAGA+AGG - chr8_3:47482613-47482632 None:intergenic 45.0%
! GCTTGGTTTAAAACCAAGCG+CGG + chr8_3:47482622-47482641 Msa1291900:CDS 45.0%
!! ATTCTCGGAGTTTGTTGCGT+TGG + chr8_3:47482700-47482719 Msa1291900:CDS 45.0%
ATGTTTGATCGGGATGGGAA+CGG + chr8_3:47482788-47482807 Msa1291900:CDS 45.0%
GCTCATTCGATGGCGAAATT+GGG + chr8_3:47482833-47482852 Msa1291900:CDS 45.0%
ATTGGGACATGCTTTAACGG+CGG + chr8_3:47482850-47482869 Msa1291900:CDS 45.0%
GGAGTTGACCGGAATGATAA+AGG + chr8_3:47482874-47482893 Msa1291900:CDS 45.0%
GAAGCTGATATGGATGGTGA+TGG + chr8_3:47482896-47482915 Msa1291900:CDS 45.0%
GTGACTGCCTCACTTGTAAT+TGG + chr8_3:47483883-47483902 Msa1291900:intron 45.0%
GTGGTCTCCAATTACAAGTG+AGG - chr8_3:47483893-47483912 None:intergenic 45.0%
TTTCTTAACCAGTACCTCGG+GGG - chr8_3:47484035-47484054 None:intergenic 45.0%
GCAGGAAACAACAAGTTAGC+TGG - chr8_3:47484322-47484341 None:intergenic 45.0%
! GTTGTTTCCTGCAGATTCGA+AGG + chr8_3:47484330-47484349 Msa1291900:intron 45.0%
TTCGAAGGCCAAACATGGAT+TGG + chr8_3:47484345-47484364 Msa1291900:CDS 45.0%
!! GCCAAACATGGATTGGTTGA+AGG + chr8_3:47484352-47484371 Msa1291900:CDS 45.0%
GCCTTCAACCAATCCATGTT+TGG - chr8_3:47484356-47484375 None:intergenic 45.0%
TACTGATGGAGCTAGTGCTT+AGG + chr8_3:47484448-47484467 Msa1291900:three_prime_UTR 45.0%
! TCGTACCCTTTTCCTATCTG+AGG + chr8_3:47484502-47484521 Msa1291900:three_prime_UTR 45.0%
! CCCTTTTCCTATCTGAGGAA+AGG + chr8_3:47484507-47484526 Msa1291900:three_prime_UTR 45.0%
AGATGTACACCCCGTATATG+GGG + chr8_3:47484639-47484658 Msa1291900:three_prime_UTR 45.0%
!! ATAAATTTGAAAAAAATTAT+TGG + chr8_3:47484587-47484606 Msa1291900:three_prime_UTR 5.0%
!! ATAAATTTGAAAAAAATTAT+TGG + chr8_3:47484587-47484606 Msa1291900:three_prime_UTR 5.0%
TGTTTGATCGGGATGGGAAC+GGG + chr8_3:47482789-47482808 Msa1291900:CDS 50.0%
! GGATGGGAACGGGTTTATCA+CGG + chr8_3:47482799-47482818 Msa1291900:CDS 50.0%
GGCTCATTCGATGGCGAAAT+TGG + chr8_3:47482832-47482851 Msa1291900:CDS 50.0%
AAGTGAGGCAGTCACGATAG+AGG - chr8_3:47483878-47483897 None:intergenic 50.0%
! TGTTTGGCCTTCGAATCTGC+AGG - chr8_3:47484340-47484359 None:intergenic 50.0%
GCAGATTCGAAGGCCAAACA+TGG + chr8_3:47484340-47484359 Msa1291900:intron 50.0%
! GGAGCCAGGCCATCAATTTT+TGG + chr8_3:47484528-47484547 Msa1291900:three_prime_UTR 50.0%
TGTTTGATCGGGATGGGAAC+GGG + chr8_3:47482789-47482808 Msa1291900:CDS 50.0%
! GGATGGGAACGGGTTTATCA+CGG + chr8_3:47482799-47482818 Msa1291900:CDS 50.0%
GGCTCATTCGATGGCGAAAT+TGG + chr8_3:47482832-47482851 Msa1291900:CDS 50.0%
AAGTGAGGCAGTCACGATAG+AGG - chr8_3:47483878-47483897 None:intergenic 50.0%
! TGTTTGGCCTTCGAATCTGC+AGG - chr8_3:47484340-47484359 None:intergenic 50.0%
GCAGATTCGAAGGCCAAACA+TGG + chr8_3:47484340-47484359 Msa1291900:intron 50.0%
! GGAGCCAGGCCATCAATTTT+TGG + chr8_3:47484528-47484547 Msa1291900:three_prime_UTR 50.0%
AACTCCCTTCTCCGTTCGCT+TGG + chr8_3:47482605-47482624 Msa1291900:CDS 55.0%
!! CTCGGAGTTTGTTGCGTTGG+TGG + chr8_3:47482703-47482722 Msa1291900:CDS 55.0%
GACTTTGCCGGCAACAACTC+CGG - chr8_3:47482731-47482750 None:intergenic 55.0%
TCCGTGTAGGGAGACTTTGC+CGG - chr8_3:47482743-47482762 None:intergenic 55.0%
AGCAGCTACGGCAGCTGTTT+AGG + chr8_3:47482765-47482784 Msa1291900:CDS 55.0%
! GAACGGGTTTATCACGGCAG+CGG + chr8_3:47482805-47482824 Msa1291900:CDS 55.0%
GTTTATCACGGCAGCGGAGT+TGG + chr8_3:47482811-47482830 Msa1291900:CDS 55.0%
! AGCGGAGTTGGCTCATTCGA+TGG + chr8_3:47482823-47482842 Msa1291900:CDS 55.0%
TTAACGGCGGAGGAGTTGAC+CGG + chr8_3:47482863-47482882 Msa1291900:CDS 55.0%
AGGTTCCTTAACCAGTGCCC+CGG + chr8_3:47484145-47484164 Msa1291900:intron 55.0%
TCTTGTTAACCAGTGCCCCC+GGG - chr8_3:47484166-47484185 None:intergenic 55.0%
! GTCTTGTTAACCAGTGCCCC+CGG - chr8_3:47484167-47484186 None:intergenic 55.0%
CCTGGCTCCTTTCCTCAGAT+AGG - chr8_3:47484517-47484536 None:intergenic 55.0%
CCTATCTGAGGAAAGGAGCC+AGG + chr8_3:47484514-47484533 Msa1291900:three_prime_UTR 55.0%
AACTCCCTTCTCCGTTCGCT+TGG + chr8_3:47482605-47482624 Msa1291900:CDS 55.0%
!! CTCGGAGTTTGTTGCGTTGG+TGG + chr8_3:47482703-47482722 Msa1291900:CDS 55.0%
GACTTTGCCGGCAACAACTC+CGG - chr8_3:47482731-47482750 None:intergenic 55.0%
TCCGTGTAGGGAGACTTTGC+CGG - chr8_3:47482743-47482762 None:intergenic 55.0%
AGCAGCTACGGCAGCTGTTT+AGG + chr8_3:47482765-47482784 Msa1291900:CDS 55.0%
! GAACGGGTTTATCACGGCAG+CGG + chr8_3:47482805-47482824 Msa1291900:CDS 55.0%
GTTTATCACGGCAGCGGAGT+TGG + chr8_3:47482811-47482830 Msa1291900:CDS 55.0%
! AGCGGAGTTGGCTCATTCGA+TGG + chr8_3:47482823-47482842 Msa1291900:CDS 55.0%
TTAACGGCGGAGGAGTTGAC+CGG + chr8_3:47482863-47482882 Msa1291900:CDS 55.0%
AGGTTCCTTAACCAGTGCCC+CGG + chr8_3:47484145-47484164 Msa1291900:intron 55.0%
TCTTGTTAACCAGTGCCCCC+GGG - chr8_3:47484166-47484185 None:intergenic 55.0%
! GTCTTGTTAACCAGTGCCCC+CGG - chr8_3:47484167-47484186 None:intergenic 55.0%
CCTGGCTCCTTTCCTCAGAT+AGG - chr8_3:47484517-47484536 None:intergenic 55.0%
CCTATCTGAGGAAAGGAGCC+AGG + chr8_3:47484514-47484533 Msa1291900:three_prime_UTR 55.0%
CCTTCTAACTGCTCCGCGCT+TGG - chr8_3:47482638-47482657 None:intergenic 60.0%
CCAAGCGCGGAGCAGTTAGA+AGG + chr8_3:47482635-47482654 Msa1291900:CDS 60.0%
!! GTTTGTTGCGTTGGTGGCGC+CGG + chr8_3:47482709-47482728 Msa1291900:CDS 60.0%
GCCGGCAAAGTCTCCCTACA+CGG + chr8_3:47482739-47482758 Msa1291900:CDS 60.0%
GGCAAAGTCTCCCTACACGG+AGG + chr8_3:47482742-47482761 Msa1291900:CDS 60.0%
CGTAGCTGCTCCTCCGTGTA+GGG - chr8_3:47482755-47482774 None:intergenic 60.0%
CCTACACGGAGGAGCAGCTA+CGG + chr8_3:47482753-47482772 Msa1291900:CDS 60.0%
GGGACATGCTTTAACGGCGG+AGG + chr8_3:47482853-47482872 Msa1291900:CDS 60.0%
AATGTTAACCGGTGCCCCCG+AGG + chr8_3:47484018-47484037 Msa1291900:intron 60.0%
GGTTCCTTAACCAGTGCCCC+GGG + chr8_3:47484146-47484165 Msa1291900:intron 60.0%
GTTCCTTAACCAGTGCCCCG+GGG + chr8_3:47484147-47484166 Msa1291900:intron 60.0%
TTCCTTAACCAGTGCCCCGG+GGG + chr8_3:47484148-47484167 Msa1291900:intron 60.0%
CTTGTTAACCAGTGCCCCCG+GGG - chr8_3:47484165-47484184 None:intergenic 60.0%
CCTTCTAACTGCTCCGCGCT+TGG - chr8_3:47482638-47482657 None:intergenic 60.0%
CCAAGCGCGGAGCAGTTAGA+AGG + chr8_3:47482635-47482654 Msa1291900:CDS 60.0%
!! GTTTGTTGCGTTGGTGGCGC+CGG + chr8_3:47482709-47482728 Msa1291900:CDS 60.0%
GCCGGCAAAGTCTCCCTACA+CGG + chr8_3:47482739-47482758 Msa1291900:CDS 60.0%
GGCAAAGTCTCCCTACACGG+AGG + chr8_3:47482742-47482761 Msa1291900:CDS 60.0%
CGTAGCTGCTCCTCCGTGTA+GGG - chr8_3:47482755-47482774 None:intergenic 60.0%
CCTACACGGAGGAGCAGCTA+CGG + chr8_3:47482753-47482772 Msa1291900:CDS 60.0%
GGGACATGCTTTAACGGCGG+AGG + chr8_3:47482853-47482872 Msa1291900:CDS 60.0%
AATGTTAACCGGTGCCCCCG+AGG + chr8_3:47484018-47484037 Msa1291900:intron 60.0%
GGTTCCTTAACCAGTGCCCC+GGG + chr8_3:47484146-47484165 Msa1291900:intron 60.0%
GTTCCTTAACCAGTGCCCCG+GGG + chr8_3:47484147-47484166 Msa1291900:intron 60.0%
TTCCTTAACCAGTGCCCCGG+GGG + chr8_3:47484148-47484167 Msa1291900:intron 60.0%
CTTGTTAACCAGTGCCCCCG+GGG - chr8_3:47484165-47484184 None:intergenic 60.0%
CCGTAGCTGCTCCTCCGTGT+AGG - chr8_3:47482756-47482775 None:intergenic 65.0%
! AACCAGTACCTCGGGGGCAC+CGG - chr8_3:47484029-47484048 None:intergenic 65.0%
CCGTAGCTGCTCCTCCGTGT+AGG - chr8_3:47482756-47482775 None:intergenic 65.0%
! AACCAGTACCTCGGGGGCAC+CGG - chr8_3:47484029-47484048 None:intergenic 65.0%
! GGTGGCGCCGGAGTTGTTGC+CGG + chr8_3:47482721-47482740 Msa1291900:CDS 70.0%
AACCGGTGCCCCCGAGGTAC+TGG + chr8_3:47484024-47484043 Msa1291900:intron 70.0%
!! TGCCCCCGGGGCACTGGTTA+AGG - chr8_3:47484153-47484172 None:intergenic 70.0%
! GGTGGCGCCGGAGTTGTTGC+CGG + chr8_3:47482721-47482740 Msa1291900:CDS 70.0%
AACCGGTGCCCCCGAGGTAC+TGG + chr8_3:47484024-47484043 Msa1291900:intron 70.0%
!! TGCCCCCGGGGCACTGGTTA+AGG - chr8_3:47484153-47484172 None:intergenic 70.0%
! AACCAGTGCCCCGGGGGCAC+TGG + chr8_3:47484154-47484173 Msa1291900:intron 75.0%
AACCAGTGCCCCCGGGGCAC+TGG - chr8_3:47484159-47484178 None:intergenic 75.0%
! AACCAGTGCCCCGGGGGCAC+TGG + chr8_3:47484154-47484173 Msa1291900:intron 75.0%
AACCAGTGCCCCCGGGGCAC+TGG - chr8_3:47484159-47484178 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 47482491 47484667 47482491 ID=Msa1291900;Name=Msa1291900
chr8_3 mRNA 47482491 47484667 47482491 ID=Msa1291900-mRNA-1;Parent=Msa1291900;Name=Msa1291900-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0|0.5|1|1|1|2|222|196
chr8_3 exon 47482491 47482979 47482491 ID=Msa1291900-mRNA-1:exon:13193;Parent=Msa1291900-mRNA-1
chr8_3 exon 47484344 47484667 47484344 ID=Msa1291900-mRNA-1:exon:13194;Parent=Msa1291900-mRNA-1
chr8_3 CDS 47482491 47482979 47482491 ID=Msa1291900-mRNA-1:cds;Parent=Msa1291900-mRNA-1
chr8_3 CDS 47484344 47484445 47484344 ID=Msa1291900-mRNA-1:cds;Parent=Msa1291900-mRNA-1
chr8_3 three_prime_UTR 47484446 47484667 47484446 ID=Msa1291900-mRNA-1:three_prime_utr;Parent=Msa1291900-mRNA-1
Gene Sequence

>Msa1291900

ATGAACAAGAAGCAACACCAAGTGAAATTAGACGACGAACAAATCTCTGAATTACGCGAAATATTCCGATCATTTGATCGAAACAACGACGGAACCCTAACACAGTTAGAACTAAACTCCCTTCTCCGTTCGCTTGGTTTAAAACCAAGCGCGGAGCAGTTAGAAGGATTTATACAAAGAGCAGACACAAACAATAACGGATTGATAGAATTCTCGGAGTTTGTTGCGTTGGTGGCGCCGGAGTTGTTGCCGGCAAAGTCTCCCTACACGGAGGAGCAGCTACGGCAGCTGTTTAGGATGTTTGATCGGGATGGGAACGGGTTTATCACGGCAGCGGAGTTGGCTCATTCGATGGCGAAATTGGGACATGCTTTAACGGCGGAGGAGTTGACCGGAATGATAAAGGAAGCTGATATGGATGGTGATGGGATGATCAGTTTTCAGGAGTTTGCTCAAGCTATTACTTCTGCTGCTTTTGATAATTCTTGGATTCGAAGGCCAAACATGGATTGGTTGAAGGCAATGTTGTGTGATGAAATAGGGTCGAAGCCTTTCCCTTCGTTGAGTCATTTTTGTGGAGACTGGTTGTAA
Protein sequence

>Msa1291900

MNKKQHQVKLDDEQISELREIFRSFDRNNDGTLTQLELNSLLRSLGLKPSAEQLEGFIQRADTNNNGLIEFSEFVALVAPELLPAKSPYTEEQLRQLFRMFDRDGNGFITAAELAHSMAKLGHALTAEELTGMIKEADMDGDGMISFQEFAQAITSAAFDNSWIRRPNMDWLKAMLCDEIGSKPFPSLSHFCGDWL*