AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1424630


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1424630 MtrunA17_Chr2g0290131 91.646 407 29 2 1 407 1 402 0.0 729
Msa1424630 MtrunA17_Chr4g0076051 67.347 392 125 3 14 402 4 395 0.0 535
Msa1424630 MtrunA17_Chr2g0278181 69.608 306 91 2 99 402 1 306 3.57e-148 422
Msa1424630 MtrunA17_Chr7g0234191 41.687 403 215 10 5 402 49 436 1.74e-102 311
Msa1424630 MtrunA17_Chr3g0101961 39.782 367 205 8 29 389 21 377 7.31e-85 263
Msa1424630 MtrunA17_Chr5g0444651 35.550 391 222 15 10 383 12 389 1.51e-65 215
Msa1424630 MtrunA17_Chr5g0447771 33.509 379 227 8 40 401 64 434 1.68e-65 215
Msa1424630 MtrunA17_Chr8g0347591 32.343 303 186 8 80 379 91 377 1.31e-37 140
Msa1424630 MtrunA17_Chr7g0275621 27.577 388 237 13 19 391 26 384 4.32e-25 105
Msa1424630 MtrunA17_Chr8g0338731 28.421 190 129 4 8 197 7 189 3.00e-17 80.5
Msa1424630 MtrunA17_Chr7g0261921 39.806 103 61 1 99 200 1 103 2.09e-15 73.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1424630 AT5G47530.1 53.315 362 156 5 32 389 25 377 3.83e-142 410
Msa1424630 AT4G17280.1 50.378 397 182 7 9 400 10 396 7.60e-131 382
Msa1424630 AT5G35735.1 48.130 401 183 8 16 402 9 398 8.54e-119 352
Msa1424630 AT3G25290.1 43.223 391 196 12 19 395 13 391 5.88e-105 316
Msa1424630 AT3G25290.2 43.223 391 196 12 19 395 13 391 5.88e-105 316
Msa1424630 AT4G12980.1 42.338 385 201 7 18 390 13 388 2.30e-96 294
Msa1424630 AT3G59070.1 41.099 382 199 10 1 375 10 372 6.07e-83 261
Msa1424630 AT2G04850.1 34.828 379 218 10 40 399 29 397 2.30e-64 211
Msa1424630 AT5G48750.1 38.610 259 143 7 1 255 8 254 2.98e-54 181
Msa1424630 AT3G07570.1 37.278 169 98 2 212 380 207 367 5.61e-30 119
Msa1424630 AT3G61750.2 35.625 160 95 3 218 377 143 294 1.48e-24 103
Msa1424630 AT3G61750.1 35.625 160 95 3 218 377 220 371 2.46e-24 103
Msa1424630 AT3G07390.1 29.891 184 122 5 23 203 39 218 3.19e-17 81.6
Msa1424630 AT3G07390.2 44.737 76 39 1 32 107 48 120 2.05e-13 68.2
Msa1424630 AT4G18260.1 28.481 158 93 3 199 346 45 192 1.70e-11 65.1
Msa1424630 AT2G30890.1 26.471 170 115 3 216 380 54 218 3.46e-11 63.5

Find 125 sgRNAs with CRISPR-Local

Find 189 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TAGATATAGATACTGGATTT+TGG 0.220701 tig0025778:-4828 Msa1424630:three_prime_UTR
AGCATCATCAACATCTTTAA+AGG 0.222620 tig0025778:-5063 Msa1424630:CDS
ATGCAACAAAATATACAAAA+AGG 0.232567 tig0025778:+4773 None:intergenic
TATAGAGAGTTGGTGGGTTT+GGG 0.254962 tig0025778:+7457 None:intergenic
TTATAGAGAGTTGGTGGGTT+TGG 0.257611 tig0025778:+7456 None:intergenic
CTACTACTTTGGTTCATCTT+TGG 0.263788 tig0025778:-6821 Msa1424630:CDS
GCCTATATAGTTGGTGTTGC+TGG 0.268677 tig0025778:-5947 Msa1424630:CDS
TACTCAATCTAAGGAGAGTT+TGG 0.289007 tig0025778:-6742 Msa1424630:CDS
CAGCAGATCGCTACGATAAC+TGG 0.293780 tig0025778:-5017 Msa1424630:CDS
ATTGATGAAGTATAAGCTTT+AGG 0.319882 tig0025778:+6963 None:intergenic
CTTCTGCCTTGGAACCCTTC+AGG 0.326027 tig0025778:-5846 Msa1424630:intron
GGAACAAATGGTAATGGATA+TGG 0.345134 tig0025778:-4874 Msa1424630:CDS
CAAAGCTTGTGCTCCATTCA+TGG 0.345197 tig0025778:+7013 None:intergenic
CTTTAAAGGGTTTGATGCCT+TGG 0.361855 tig0025778:-5049 Msa1424630:CDS
TCAACATGGTTGTGAACTTA+AGG 0.366759 tig0025778:-7310 Msa1424630:exon
TCCTGTTGGAACTACTACTT+TGG 0.373099 tig0025778:-6832 Msa1424630:CDS
CATGAATGGAGCACAAGCTT+TGG 0.373312 tig0025778:-7012 Msa1424630:CDS
GAGAGTTTGGATCTTCGTTC+TGG 0.374390 tig0025778:-6729 Msa1424630:CDS
AAGTGAAGAGGTTGTGAGAT+TGG 0.376717 tig0025778:+7412 None:intergenic
ATGGTAATGGATATGGTTCT+AGG 0.376964 tig0025778:-4867 Msa1424630:CDS
GGGTGGCGTTGCTGTACTTT+TGG 0.394743 tig0025778:-4962 Msa1424630:CDS
CTACTGGAACCTTTACCATT+GGG 0.394836 tig0025778:-5112 Msa1424630:CDS
TAGTGCTAATACTCAATCTA+AGG 0.401924 tig0025778:-6751 Msa1424630:CDS
CACTGGCATTATTGCAGCAT+TGG 0.406523 tig0025778:-4983 Msa1424630:CDS
TGGCAAGATGGTGCTATGTC+TGG 0.406620 tig0025778:-6801 Msa1424630:CDS
GCTTATACTTCATCAATTGC+CGG 0.410077 tig0025778:-6957 Msa1424630:CDS
GCATCATCAACATCTTTAAA+GGG 0.412669 tig0025778:-5062 Msa1424630:CDS
CGTTCTGGTGCTTCTGAACA+AGG 0.418467 tig0025778:-6714 Msa1424630:CDS
CATAGTGAAATCCTGGAGTA+TGG 0.420412 tig0025778:-4698 Msa1424630:three_prime_UTR
TTGGTTCATCTTTGGCAAGA+TGG 0.435669 tig0025778:-6813 Msa1424630:CDS
TAAAGGGTTTGATGCCTTGG+AGG 0.436696 tig0025778:-5046 Msa1424630:CDS
ATTGGAGAGAGAGGAGGAAG+GGG 0.438288 tig0025778:+7430 None:intergenic
TGGGGAGTCTTGATGCCGTT+GGG 0.440117 tig0025778:-6052 Msa1424630:CDS
TTCATAGCATAGTGAAATCC+TGG 0.444279 tig0025778:-4705 Msa1424630:three_prime_UTR
ACTGAGATAGATATAGATAC+TGG 0.445998 tig0025778:-4835 Msa1424630:three_prime_UTR
TCAAGTCTGCAGACCCTGCT+TGG 0.447998 tig0025778:-6000 Msa1424630:CDS
GAGTGTTTGTAGTATACTCT+TGG 0.448168 tig0025778:-4750 Msa1424630:three_prime_UTR
AACAAGTTGCAAGGAATGAA+TGG 0.449100 tig0025778:-4895 Msa1424630:CDS
AGATTGGAGAGAGAGGAGGA+AGG 0.451634 tig0025778:+7428 None:intergenic
GATTGGAGAGAGAGGAGGAA+GGG 0.457016 tig0025778:+7429 None:intergenic
TGGATATGGTTCTAGGGTGT+AGG 0.460818 tig0025778:-4860 Msa1424630:exon
CAAGGAATGAATGGAACAAA+TGG 0.462291 tig0025778:-4886 Msa1424630:CDS
TCCAGCAACACCAACTATAT+AGG 0.465181 tig0025778:+5946 None:intergenic
GGTGTTGCTGGATGGGGTAC+CGG 0.465931 tig0025778:-5935 Msa1424630:CDS
ATGAATGGAACAAATGGTAA+TGG 0.468323 tig0025778:-4880 Msa1424630:CDS
ACTGGCATTATTGCAGCATT+GGG 0.469702 tig0025778:-4982 Msa1424630:CDS
AGAGAGTTGGTGGGTTTGGG+TGG 0.470809 tig0025778:+7460 None:intergenic
GGGTTATTATAGAGAGTTGG+TGG 0.476197 tig0025778:+7450 None:intergenic
AAGGGGTTATTATAGAGAGT+TGG 0.476615 tig0025778:+7447 None:intergenic
TATAGTTGGTGTTGCTGGAT+GGG 0.478511 tig0025778:-5942 Msa1424630:CDS
CTCTCTGCTAATTGTGTCGC+TGG 0.479571 tig0025778:+6933 None:intergenic
CAATCAGCTGCCTATATAGT+TGG 0.479959 tig0025778:-5956 Msa1424630:CDS
TCTACTGGAACCTTTACCAT+TGG 0.481797 tig0025778:-5113 Msa1424630:CDS
GAGTGCTAAATGCAATAAGC+TGG 0.482103 tig0025778:-6072 Msa1424630:CDS
TTGTGTTGTTGTTTGTGCTA+AGG 0.482521 tig0025778:+7238 None:intergenic
GGTGCTTCTGAACAAGGATC+AGG 0.484364 tig0025778:-6708 Msa1424630:CDS
TATATAGGCAGCTGATTGGC+AGG 0.484585 tig0025778:+5961 None:intergenic
GGTTGTGAGATTGGAGAGAG+AGG 0.485045 tig0025778:+7421 None:intergenic
GGGATCATCATCTTCTGCCT+TGG 0.486081 tig0025778:-5857 Msa1424630:CDS
GAAGATGTGAGATCCTTGTC+TGG 0.487322 tig0025778:+7035 None:intergenic
CAACTATATAGGCAGCTGAT+TGG 0.489184 tig0025778:+5957 None:intergenic
TGCTAATTGTGTCGCTGGAC+CGG 0.489743 tig0025778:+6938 None:intergenic
ATCACAAAATCAGATTCTAC+TGG 0.492868 tig0025778:-5128 Msa1424630:CDS
GATCTCACATCTTCCATGAA+TGG 0.494534 tig0025778:-7026 Msa1424630:CDS
AACCTTTACCATTGGGGTGT+CGG 0.496844 tig0025778:-5105 Msa1424630:CDS
ACCAAAGTAGTAGTTCCAAC+AGG 0.497576 tig0025778:+6831 None:intergenic
ATATAGTTGGTGTTGCTGGA+TGG 0.498343 tig0025778:-5943 Msa1424630:CDS
CTGGGGAGTCTTGATGCCGT+TGG 0.502768 tig0025778:-6053 Msa1424630:CDS
GGATATGGTTCTAGGGTGTA+GGG 0.503228 tig0025778:-4859 Msa1424630:exon
ATCCGACACCCCAATGGTAA+AGG 0.503836 tig0025778:+5103 None:intergenic
GCAAGTATTACTCTTCCTGT+TGG 0.510786 tig0025778:-6846 Msa1424630:CDS
TTAGGAGTTCCACTAGATTG+TGG 0.518776 tig0025778:+6981 None:intergenic
AAGCTTGGCAGTGACTCGGC+TGG 0.518836 tig0025778:-5908 Msa1424630:CDS
ACACAAACCGATGGGTAGCA+TGG 0.519624 tig0025778:-7067 Msa1424630:CDS
AACTCACCTCGTATCTCCAC+TGG 0.522653 tig0025778:-7148 Msa1424630:CDS
TTATTGCATTTAGCACTCCA+TGG 0.523173 tig0025778:+6077 None:intergenic
TGGGGTACCGGTCTCAAGCT+TGG 0.527745 tig0025778:-5923 Msa1424630:CDS
GTTGCAATTCCACAATCTAG+TGG 0.528492 tig0025778:-6990 Msa1424630:CDS
ATAGTTGGTGTTGCTGGATG+GGG 0.535576 tig0025778:-5941 Msa1424630:CDS
GGCATTATTGCAGCATTGGG+TGG 0.536995 tig0025778:-4979 Msa1424630:CDS
TGGTAATGGATATGGTTCTA+GGG 0.540128 tig0025778:-4866 Msa1424630:CDS
TGAGGAGATTGAAAGTGAAG+AGG 0.541064 tig0025778:+7400 None:intergenic
TATTGCATTTAGCACTCCAT+GGG 0.546826 tig0025778:+6078 None:intergenic
CTCATACCTGAAGGGTTCCA+AGG 0.549493 tig0025778:+5840 None:intergenic
GTCACTGCCAAGCTTGAGAC+CGG 0.549684 tig0025778:+5916 None:intergenic
AAATGATACAAAGTATCCAC+TGG 0.549921 tig0025778:+4656 None:intergenic
ACATGAAGGTAAAACCAAGC+AGG 0.551666 tig0025778:+5986 None:intergenic
AACTGGAAGCATGCGTACAC+TGG 0.553041 tig0025778:-5000 Msa1424630:CDS
TGTGATTGCAAGGTACTTGA+AGG 0.556632 tig0025778:-6026 Msa1424630:CDS
TACTGGAACCTTTACCATTG+GGG 0.558856 tig0025778:-5111 Msa1424630:CDS
GGTTATTATAGAGAGTTGGT+GGG 0.567435 tig0025778:+7451 None:intergenic
AGTGCTAAATGCAATAAGCT+GGG 0.569932 tig0025778:-6071 Msa1424630:CDS
CACAAACCGATGGGTAGCAT+GGG 0.570671 tig0025778:-7066 Msa1424630:CDS
CATGGATCATTGTGATCAAG+AGG 0.572443 tig0025778:-4930 Msa1424630:CDS
TCTCAAGCTTGGCAGTGACT+CGG 0.574366 tig0025778:-5912 Msa1424630:CDS
TCGCCATGCTATTATTCCAG+TGG 0.577374 tig0025778:-4672 Msa1424630:three_prime_UTR
TATTCAACTCATAGAACACT+CGG 0.580467 tig0025778:-5878 Msa1424630:CDS
CATGGCGAAAACCATACTCC+AGG 0.580782 tig0025778:+4687 None:intergenic
TGTGAGATTGGAGAGAGAGG+AGG 0.580916 tig0025778:+7424 None:intergenic
GTAGCACTCAATCTTGAATG+AGG 0.591825 tig0025778:+6897 None:intergenic
TGCTACACATGAAAATAATG+AGG 0.596383 tig0025778:-6880 Msa1424630:CDS
TCTGAACAAGGATCAGGCGG+TGG 0.598620 tig0025778:-6702 Msa1424630:CDS
GTATAACAAACACAAACCGA+TGG 0.599459 tig0025778:-7076 Msa1424630:CDS
TGGAGATACGAGGTGAGTTG+TGG 0.602619 tig0025778:+7152 None:intergenic
AAATCAGAGAACAAGTTGCA+AGG 0.608640 tig0025778:-4904 Msa1424630:CDS
CGTTGGGAGCTGTGATTGCA+AGG 0.616544 tig0025778:-6036 Msa1424630:CDS
TTGCGTATCCGACACCCCAA+TGG 0.617721 tig0025778:+5097 None:intergenic
TAATAGCCCATGCTACCCAT+CGG 0.617929 tig0025778:+7060 None:intergenic
ATCTGCTGCAGACACCTCCA+AGG 0.621895 tig0025778:+5032 None:intergenic
GACATAGCATTCAGACACTC+AGG 0.622339 tig0025778:-7098 Msa1424630:CDS
TATCCACTGGAATAATAGCA+TGG 0.624226 tig0025778:+4669 None:intergenic
CTGATTGGCAGGTAACATGA+AGG 0.627406 tig0025778:+5972 None:intergenic
CATGTAATCTCATACCTGAA+GGG 0.631087 tig0025778:+5832 None:intergenic
TATAACAAACACAAACCGAT+GGG 0.637410 tig0025778:-7075 Msa1424630:CDS
CATGAAGGTAAAACCAAGCA+GGG 0.639212 tig0025778:+5987 None:intergenic
CTAGTCATATCATGAGCTTG+AGG 0.649595 tig0025778:+6771 None:intergenic
GTGCTAAATGCAATAAGCTG+GGG 0.662810 tig0025778:-6070 Msa1424630:CDS
CTTGCAATCACAGCTCCCAA+CGG 0.668115 tig0025778:+6037 None:intergenic
ATTCAACTCATAGAACACTC+GGG 0.675546 tig0025778:-5877 Msa1424630:CDS
GCTTCTGAACAAGGATCAGG+CGG 0.676930 tig0025778:-6705 Msa1424630:CDS
TGGACATACGATCAAAACAC+AGG 0.688340 tig0025778:-7128 Msa1424630:CDS
ATGTTGTTATGATTGAGATG+AGG 0.696927 tig0025778:+7279 None:intergenic
AAGATGTGAGATCCTTGTCT+GGG 0.704804 tig0025778:+7036 None:intergenic
ATGGGCTATTAACCCAGACA+AGG 0.714059 tig0025778:-7048 Msa1424630:CDS
GTATGTCCAGTGGAGATACG+AGG 0.728963 tig0025778:+7142 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAACTACTAATAAAAT+TGG + tig0025778:5563-5582 None:intergenic 10.0%
!! AAGAAAAATGTATAAATAAA+GGG + tig0025778:6523-6542 None:intergenic 10.0%
!! TAAGAAAAATGTATAAATAA+AGG + tig0025778:6524-6543 None:intergenic 10.0%
!!! ATAATCAAAGTTTTAAATTG+CGG - tig0025778:5493-5512 Msa1424630:intron 15.0%
!!! AAATTGATTTTAGTTAAAGA+TGG - tig0025778:5702-5721 Msa1424630:intron 15.0%
!!! AATTGATTTTAGTTAAAGAT+GGG - tig0025778:5703-5722 Msa1424630:intron 15.0%
!!! AATATTTTAAATTGCATATG+TGG - tig0025778:6227-6246 Msa1424630:intron 15.0%
!! AATTAGAGTTATATTGTATT+GGG + tig0025778:6458-6477 None:intergenic 15.0%
!! TAATTAGAGTTATATTGTAT+TGG + tig0025778:6459-6478 None:intergenic 15.0%
!! AGAAAAATGTATAAATAAAG+GGG + tig0025778:6522-6541 None:intergenic 15.0%
!!! TTTGTTTTTGTTTTTGTGTT+GGG + tig0025778:4644-4663 None:intergenic 20.0%
!!! TAGTTTTTTTAGTGTTGATT+TGG - tig0025778:5573-5592 Msa1424630:intron 20.0%
!!! TTGGATTTTATTTGGTAATT+TGG - tig0025778:5875-5894 Msa1424630:CDS 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG + tig0025778:6389-6408 None:intergenic 20.0%
!! AAAGTGGAATATATTGTATT+GGG + tig0025778:6499-6518 None:intergenic 20.0%
!!! TTATGAGTTTTATTGAGTTT+TGG - tig0025778:7205-7224 Msa1424630:CDS 20.0%
!! TGCAACAAAATATACAAAAA+GGG + tig0025778:7238-7257 None:intergenic 20.0%
!! ATGCAACAAAATATACAAAA+AGG + tig0025778:7239-7258 None:intergenic 20.0%
!!! CTTTGTTTTTGTTTTTGTGT+TGG + tig0025778:4645-4664 None:intergenic 25.0%
! ATTGATGAAGTATAAGCTTT+AGG + tig0025778:5049-5068 None:intergenic 25.0%
! ATTATATCACCTTCAATCAA+AGG - tig0025778:5422-5441 Msa1424630:intron 25.0%
! TTATATCACCTTCAATCAAA+GGG - tig0025778:5423-5442 Msa1424630:intron 25.0%
!!! TGAACTTTTTTCTGTCAAAT+TGG - tig0025778:5637-5656 Msa1424630:intron 25.0%
!! AAATTGGTGAATTGTTGTTA+AGG - tig0025778:5653-5672 Msa1424630:intron 25.0%
!! AAGAAGGTTTGGATTTTATT+TGG - tig0025778:5867-5886 Msa1424630:CDS 25.0%
! GGTAATTTGGAAATTGATTA+AGG - tig0025778:5888-5907 Msa1424630:CDS 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG + tig0025778:6390-6409 None:intergenic 25.0%
!!! TGAAATGACTCAGTTATTTT+GGG + tig0025778:6411-6430 None:intergenic 25.0%
!! TTGAAATGACTCAGTTATTT+TGG + tig0025778:6412-6431 None:intergenic 25.0%
! GAAAGTGGAATATATTGTAT+TGG + tig0025778:6500-6519 None:intergenic 25.0%
!!! ATATACAAGGTTTTGAATTG+TGG - tig0025778:6594-6613 Msa1424630:intron 25.0%
!! TAGATATAGATACTGGATTT+TGG - tig0025778:7181-7200 Msa1424630:CDS 25.0%
!!! TGTGTTGGGTTTTTTTTATG+AGG + tig0025778:4630-4649 None:intergenic 30.0%
TTCCATCAAAAACATCAACA+TGG - tig0025778:4685-4704 Msa1424630:three_prime_UTR 30.0%
!! AACCATGTTGATGTTTTTGA+TGG + tig0025778:4690-4709 None:intergenic 30.0%
ATGTTGTTATGATTGAGATG+AGG + tig0025778:4733-4752 None:intergenic 30.0%
TATAACAAACACAAACCGAT+GGG - tig0025778:4934-4953 Msa1424630:CDS 30.0%
TGCTACACATGAAAATAATG+AGG - tig0025778:5129-5148 Msa1424630:CDS 30.0%
TAGTGCTAATACTCAATCTA+AGG - tig0025778:5258-5277 Msa1424630:intron 30.0%
!!! TAATTTTTTGTTCAGACCCA+TGG - tig0025778:5915-5934 Msa1424630:CDS 30.0%
TATTCAACTCATAGAACACT+CGG - tig0025778:6131-6150 Msa1424630:intron 30.0%
TGTATAAATAAAGGGGAAAG+TGG + tig0025778:6515-6534 None:intergenic 30.0%
TAAAAAAAGCAATGATGCTG+CGG - tig0025778:6704-6723 Msa1424630:CDS 30.0%
! AAACTTTTCCTACTGAATAC+AGG - tig0025778:6828-6847 Msa1424630:CDS 30.0%
! CTGATTTTGTGATCTTTGTT+TGG + tig0025778:6874-6893 None:intergenic 30.0%
ATCACAAAATCAGATTCTAC+TGG - tig0025778:6881-6900 Msa1424630:CDS 30.0%
AGCATCATCAACATCTTTAA+AGG - tig0025778:6946-6965 Msa1424630:CDS 30.0%
GCATCATCAACATCTTTAAA+GGG - tig0025778:6947-6966 Msa1424630:CDS 30.0%
ATGAATGGAACAAATGGTAA+TGG - tig0025778:7129-7148 Msa1424630:CDS 30.0%
ACTGAGATAGATATAGATAC+TGG - tig0025778:7174-7193 Msa1424630:CDS 30.0%
! AAATGATACAAAGTATCCAC+TGG + tig0025778:7356-7375 None:intergenic 30.0%
! GGTTATTATAGAGAGTTGGT+GGG + tig0025778:4561-4580 None:intergenic 35.0%
AAGGGGTTATTATAGAGAGT+TGG + tig0025778:4565-4584 None:intergenic 35.0%
TCAACATGGTTGTGAACTTA+AGG - tig0025778:4699-4718 Msa1424630:three_prime_UTR 35.0%
!! TTGTGTTGTTGTTTGTGCTA+AGG + tig0025778:4774-4793 None:intergenic 35.0%
GTATAACAAACACAAACCGA+TGG - tig0025778:4933-4952 Msa1424630:CDS 35.0%
GCTTATACTTCATCAATTGC+CGG - tig0025778:5052-5071 Msa1424630:CDS 35.0%
! CTACTACTTTGGTTCATCTT+TGG - tig0025778:5188-5207 Msa1424630:intron 35.0%
TACTCAATCTAAGGAGAGTT+TGG - tig0025778:5267-5286 Msa1424630:intron 35.0%
ACTATAGACCCTTTGATTGA+AGG + tig0025778:5434-5453 None:intergenic 35.0%
!! GTGATGGATCGTTAATATCA+CGG - tig0025778:5524-5543 Msa1424630:intron 35.0%
TCGTTAATATCACGGAGAAT+TGG - tig0025778:5532-5551 Msa1424630:intron 35.0%
TTAGATGTTACGCAACAAGA+AGG - tig0025778:5851-5870 Msa1424630:CDS 35.0%
TATTGCATTTAGCACTCCAT+GGG + tig0025778:5934-5953 None:intergenic 35.0%
TTATTGCATTTAGCACTCCA+TGG + tig0025778:5935-5954 None:intergenic 35.0%
AGTGCTAAATGCAATAAGCT+GGG - tig0025778:5938-5957 Msa1424630:CDS 35.0%
ATTCAACTCATAGAACACTC+GGG - tig0025778:6132-6151 Msa1424630:intron 35.0%
CATGTAATCTCATACCTGAA+GGG + tig0025778:6180-6199 None:intergenic 35.0%
ACATGTAATCTCATACCTGA+AGG + tig0025778:6181-6200 None:intergenic 35.0%
AGAAAATGGGTCAGATATTC+CGG + tig0025778:6376-6395 None:intergenic 35.0%
ATCTGTGTGAAAAACCAAAC+TGG - tig0025778:6544-6563 Msa1424630:intron 35.0%
AGCAAAAACCTGTATTCAGT+AGG + tig0025778:6839-6858 None:intergenic 35.0%
!! TACTTTTGGAAGCTTACACA+TGG - tig0025778:7061-7080 Msa1424630:CDS 35.0%
AAATCAGAGAACAAGTTGCA+AGG - tig0025778:7105-7124 Msa1424630:CDS 35.0%
AACAAGTTGCAAGGAATGAA+TGG - tig0025778:7114-7133 Msa1424630:CDS 35.0%
CAAGGAATGAATGGAACAAA+TGG - tig0025778:7123-7142 Msa1424630:CDS 35.0%
!! GGAACAAATGGTAATGGATA+TGG - tig0025778:7135-7154 Msa1424630:CDS 35.0%
!! ATGGTAATGGATATGGTTCT+AGG - tig0025778:7142-7161 Msa1424630:CDS 35.0%
!! TGGTAATGGATATGGTTCTA+GGG - tig0025778:7143-7162 Msa1424630:CDS 35.0%
GAGTGTTTGTAGTATACTCT+TGG - tig0025778:7259-7278 Msa1424630:CDS 35.0%
TTCATAGCATAGTGAAATCC+TGG - tig0025778:7304-7323 Msa1424630:CDS 35.0%
TATCCACTGGAATAATAGCA+TGG + tig0025778:7343-7362 None:intergenic 35.0%
!! TATAGAGAGTTGGTGGGTTT+GGG + tig0025778:4555-4574 None:intergenic 40.0%
!! TTATAGAGAGTTGGTGGGTT+TGG + tig0025778:4556-4575 None:intergenic 40.0%
GGGTTATTATAGAGAGTTGG+TGG + tig0025778:4562-4581 None:intergenic 40.0%
AAGTGAAGAGGTTGTGAGAT+TGG + tig0025778:4600-4619 None:intergenic 40.0%
TGAGGAGATTGAAAGTGAAG+AGG + tig0025778:4612-4631 None:intergenic 40.0%
!!! TGTTTTGATCGTATGTCCAG+TGG + tig0025778:4880-4899 None:intergenic 40.0%
TGGACATACGATCAAAACAC+AGG - tig0025778:4881-4900 Msa1424630:CDS 40.0%
AAGATGTGAGATCCTTGTCT+GGG + tig0025778:4976-4995 None:intergenic 40.0%
GATCTCACATCTTCCATGAA+TGG - tig0025778:4983-5002 Msa1424630:CDS 40.0%
GTTGCAATTCCACAATCTAG+TGG - tig0025778:5019-5038 Msa1424630:CDS 40.0%
TTAGGAGTTCCACTAGATTG+TGG + tig0025778:5031-5050 None:intergenic 40.0%
GTAGCACTCAATCTTGAATG+AGG + tig0025778:5115-5134 None:intergenic 40.0%
GCAAGTATTACTCTTCCTGT+TGG - tig0025778:5163-5182 Msa1424630:intron 40.0%
TCCTGTTGGAACTACTACTT+TGG - tig0025778:5177-5196 Msa1424630:intron 40.0%
ACCAAAGTAGTAGTTCCAAC+AGG + tig0025778:5181-5200 None:intergenic 40.0%
TTGGTTCATCTTTGGCAAGA+TGG - tig0025778:5196-5215 Msa1424630:intron 40.0%
CTAGTCATATCATGAGCTTG+AGG + tig0025778:5241-5260 None:intergenic 40.0%
TGTTACGCAACAAGAAGGTT+TGG - tig0025778:5856-5875 Msa1424630:CDS 40.0%
GAGTGCTAAATGCAATAAGC+TGG - tig0025778:5937-5956 Msa1424630:CDS 40.0%
GTGCTAAATGCAATAAGCTG+GGG - tig0025778:5939-5958 Msa1424630:CDS 40.0%
! TGTGATTGCAAGGTACTTGA+AGG - tig0025778:5983-6002 Msa1424630:CDS 40.0%
CATGAAGGTAAAACCAAGCA+GGG + tig0025778:6025-6044 None:intergenic 40.0%
ACATGAAGGTAAAACCAAGC+AGG + tig0025778:6026-6045 None:intergenic 40.0%
CAACTATATAGGCAGCTGAT+TGG + tig0025778:6055-6074 None:intergenic 40.0%
CAATCAGCTGCCTATATAGT+TGG - tig0025778:6053-6072 Msa1424630:CDS 40.0%
TCCAGCAACACCAACTATAT+AGG + tig0025778:6066-6085 None:intergenic 40.0%
!! ATATAGTTGGTGTTGCTGGA+TGG - tig0025778:6066-6085 Msa1424630:CDS 40.0%
!! TATAGTTGGTGTTGCTGGAT+GGG - tig0025778:6067-6086 Msa1424630:CDS 40.0%
GAAAATGGGTCAGATATTCC+GGG + tig0025778:6375-6394 None:intergenic 40.0%
! CCAAACTGGCTCAGATAAAA+CGG - tig0025778:6558-6577 Msa1424630:intron 40.0%
! CAAACTGGCTCAGATAAAAC+GGG - tig0025778:6559-6578 Msa1424630:intron 40.0%
!!! AAGGTTTTGAATTGTGGCTG+TGG - tig0025778:6600-6619 Msa1424630:intron 40.0%
TCAAAAGACGCATATCAGCA+AGG + tig0025778:6761-6780 None:intergenic 40.0%
! AGGTTTTTGCTCTGCTATTG+AGG - tig0025778:6848-6867 Msa1424630:CDS 40.0%
TCTACTGGAACCTTTACCAT+TGG - tig0025778:6896-6915 Msa1424630:CDS 40.0%
CTACTGGAACCTTTACCATT+GGG - tig0025778:6897-6916 Msa1424630:CDS 40.0%
TACTGGAACCTTTACCATTG+GGG - tig0025778:6898-6917 Msa1424630:CDS 40.0%
! CTTTAAAGGGTTTGATGCCT+TGG - tig0025778:6960-6979 Msa1424630:CDS 40.0%
ACTGGCATTATTGCAGCATT+GGG - tig0025778:7027-7046 Msa1424630:CDS 40.0%
CATGGATCATTGTGATCAAG+AGG - tig0025778:7079-7098 Msa1424630:CDS 40.0%
CATAGTGAAATCCTGGAGTA+TGG - tig0025778:7311-7330 Msa1424630:exon 40.0%
GACATAGCATTCAGACACTC+AGG - tig0025778:4911-4930 Msa1424630:CDS 45.0%
TAATAGCCCATGCTACCCAT+CGG + tig0025778:4952-4971 None:intergenic 45.0%
! ATGGGCTATTAACCCAGACA+AGG - tig0025778:4961-4980 Msa1424630:CDS 45.0%
GAAGATGTGAGATCCTTGTC+TGG + tig0025778:4977-4996 None:intergenic 45.0%
CAAAGCTTGTGCTCCATTCA+TGG + tig0025778:4999-5018 None:intergenic 45.0%
CATGAATGGAGCACAAGCTT+TGG - tig0025778:4997-5016 Msa1424630:CDS 45.0%
GAGAGTTTGGATCTTCGTTC+TGG - tig0025778:5280-5299 Msa1424630:intron 45.0%
AATTGCGGCTATGATCGTGA+TGG - tig0025778:5508-5527 Msa1424630:intron 45.0%
CTGATTGGCAGGTAACATGA+AGG + tig0025778:6040-6059 None:intergenic 45.0%
TATATAGGCAGCTGATTGGC+AGG + tig0025778:6051-6070 None:intergenic 45.0%
!! GCCTATATAGTTGGTGTTGC+TGG - tig0025778:6062-6081 Msa1424630:CDS 45.0%
!! ATAGTTGGTGTTGCTGGATG+GGG - tig0025778:6068-6087 Msa1424630:CDS 45.0%
! CCGTTTTATCTGAGCCAGTT+TGG + tig0025778:6561-6580 None:intergenic 45.0%
GACGGAGGGAGTAATATACA+AGG - tig0025778:6581-6600 Msa1424630:intron 45.0%
AACCTTTACCATTGGGGTGT+CGG - tig0025778:6904-6923 Msa1424630:CDS 45.0%
TAAAGGGTTTGATGCCTTGG+AGG - tig0025778:6963-6982 Msa1424630:CDS 45.0%
CACTGGCATTATTGCAGCAT+TGG - tig0025778:7026-7045 Msa1424630:CDS 45.0%
!! TGGATATGGTTCTAGGGTGT+AGG - tig0025778:7149-7168 Msa1424630:CDS 45.0%
!! GGATATGGTTCTAGGGTGTA+GGG - tig0025778:7150-7169 Msa1424630:CDS 45.0%
TCGCCATGCTATTATTCCAG+TGG - tig0025778:7337-7356 Msa1424630:five_prime_UTR 45.0%
ATTGGAGAGAGAGGAGGAAG+GGG + tig0025778:4582-4601 None:intergenic 50.0%
GATTGGAGAGAGAGGAGGAA+GGG + tig0025778:4583-4602 None:intergenic 50.0%
AGATTGGAGAGAGAGGAGGA+AGG + tig0025778:4584-4603 None:intergenic 50.0%
TGTGAGATTGGAGAGAGAGG+AGG + tig0025778:4588-4607 None:intergenic 50.0%
GGTTGTGAGATTGGAGAGAG+AGG + tig0025778:4591-4610 None:intergenic 50.0%
TGGAGATACGAGGTGAGTTG+TGG + tig0025778:4860-4879 None:intergenic 50.0%
AACTCACCTCGTATCTCCAC+TGG - tig0025778:4861-4880 Msa1424630:CDS 50.0%
GTATGTCCAGTGGAGATACG+AGG + tig0025778:4870-4889 None:intergenic 50.0%
ACACAAACCGATGGGTAGCA+TGG - tig0025778:4942-4961 Msa1424630:CDS 50.0%
CACAAACCGATGGGTAGCAT+GGG - tig0025778:4943-4962 Msa1424630:CDS 50.0%
! TGCTAATTGTGTCGCTGGAC+CGG + tig0025778:5074-5093 None:intergenic 50.0%
CTCTCTGCTAATTGTGTCGC+TGG + tig0025778:5079-5098 None:intergenic 50.0%
!! TGGCAAGATGGTGCTATGTC+TGG - tig0025778:5208-5227 Msa1424630:intron 50.0%
CGTTCTGGTGCTTCTGAACA+AGG - tig0025778:5295-5314 Msa1424630:intron 50.0%
GGTGCTTCTGAACAAGGATC+AGG - tig0025778:5301-5320 Msa1424630:intron 50.0%
GCTTCTGAACAAGGATCAGG+CGG - tig0025778:5304-5323 Msa1424630:intron 50.0%
CTTGCAATCACAGCTCCCAA+CGG + tig0025778:5975-5994 None:intergenic 50.0%
TCTCAAGCTTGGCAGTGACT+CGG - tig0025778:6097-6116 Msa1424630:intron 50.0%
GGGATCATCATCTTCTGCCT+TGG - tig0025778:6152-6171 Msa1424630:intron 50.0%
CTCATACCTGAAGGGTTCCA+AGG + tig0025778:6172-6191 None:intergenic 50.0%
ATGGGTCAGATATTCCGGGA+CGG + tig0025778:6371-6390 None:intergenic 50.0%
CTGGCTCAGATAAAACGGGA+CGG - tig0025778:6563-6582 Msa1424630:intron 50.0%
CTCAGATAAAACGGGACGGA+GGG - tig0025778:6567-6586 Msa1424630:intron 50.0%
ATGATGCTGCGGTCAGATTG+TGG - tig0025778:6715-6734 Msa1424630:CDS 50.0%
ATCCGACACCCCAATGGTAA+AGG + tig0025778:6909-6928 None:intergenic 50.0%
CAGCAGATCGCTACGATAAC+TGG - tig0025778:6992-7011 Msa1424630:CDS 50.0%
! AACTGGAAGCATGCGTACAC+TGG - tig0025778:7009-7028 Msa1424630:CDS 50.0%
! GGCATTATTGCAGCATTGGG+TGG - tig0025778:7030-7049 Msa1424630:CDS 50.0%
CATGGCGAAAACCATACTCC+AGG + tig0025778:7325-7344 None:intergenic 50.0%
TCTGAACAAGGATCAGGCGG+TGG - tig0025778:5307-5326 Msa1424630:intron 55.0%
TGGGGAGTCTTGATGCCGTT+GGG - tig0025778:5957-5976 Msa1424630:CDS 55.0%
CGTTGGGAGCTGTGATTGCA+AGG - tig0025778:5973-5992 Msa1424630:CDS 55.0%
TCAAGTCTGCAGACCCTGCT+TGG - tig0025778:6009-6028 Msa1424630:CDS 55.0%
GTCACTGCCAAGCTTGAGAC+CGG + tig0025778:6096-6115 None:intergenic 55.0%
CTTCTGCCTTGGAACCCTTC+AGG - tig0025778:6163-6182 Msa1424630:intron 55.0%
AACTACTACTCCCTCCGTCC+CGG - tig0025778:6354-6373 Msa1424630:intron 55.0%
GTCAGATATTCCGGGACGGA+GGG + tig0025778:6367-6386 None:intergenic 55.0%
GCTCAGATAAAACGGGACGG+AGG - tig0025778:6566-6585 Msa1424630:intron 55.0%
TTGCGTATCCGACACCCCAA+TGG + tig0025778:6915-6934 None:intergenic 55.0%
ATCTGCTGCAGACACCTCCA+AGG + tig0025778:6980-6999 None:intergenic 55.0%
! GGGTGGCGTTGCTGTACTTT+TGG - tig0025778:7047-7066 Msa1424630:CDS 55.0%
CTGGGGAGTCTTGATGCCGT+TGG - tig0025778:5956-5975 Msa1424630:CDS 60.0%
!! GGTGTTGCTGGATGGGGTAC+CGG - tig0025778:6074-6093 Msa1424630:CDS 60.0%
!! TGGGGTACCGGTCTCAAGCT+TGG - tig0025778:6086-6105 Msa1424630:intron 60.0%
! AAGCTTGGCAGTGACTCGGC+TGG - tig0025778:6101-6120 Msa1424630:intron 60.0%
GGTCAGATATTCCGGGACGG+AGG + tig0025778:6368-6387 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
tig0025778 gene 4552 7479 4552 ID=Msa1424630;Name=Msa1424630
tig0025778 mRNA 4552 7479 4552 ID=Msa1424630-mRNA-1;Parent=Msa1424630;Name=Msa1424630-mRNA-1;_AED=0.01;_eAED=0.01;_QI=152|1|1|1|1|1|3|309|407
tig0025778 exon 4552 5181 4552 ID=Msa1424630-mRNA-1:exon:3887;Parent=Msa1424630-mRNA-1
tig0025778 exon 5847 6101 5847 ID=Msa1424630-mRNA-1:exon:3886;Parent=Msa1424630-mRNA-1
tig0025778 exon 6680 7479 6680 ID=Msa1424630-mRNA-1:exon:3885;Parent=Msa1424630-mRNA-1
tig0025778 five_prime_UTR 7328 7479 7328 ID=Msa1424630-mRNA-1:five_prime_utr;Parent=Msa1424630-mRNA-1
tig0025778 CDS 6680 7327 6680 ID=Msa1424630-mRNA-1:cds;Parent=Msa1424630-mRNA-1
tig0025778 CDS 5847 6101 5847 ID=Msa1424630-mRNA-1:cds;Parent=Msa1424630-mRNA-1
tig0025778 CDS 4861 5181 4861 ID=Msa1424630-mRNA-1:cds;Parent=Msa1424630-mRNA-1
tig0025778 three_prime_UTR 4552 4860 4552 ID=Msa1424630-mRNA-1:three_prime_utr;Parent=Msa1424630-mRNA-1
Gene Sequence

>Msa1424630

ATGGTTGTGAACTTAAGGTTCATGTTCCTCATCTCAATCATAACAACATCTCTTTTTGTTACAACAACCTTAGCACAAACAACAACACAAACACAAACATGTAAATCACACAACTTCACAAACAACGAAGTTTTCACATCATGTCGTGATCTACCACAACTCACCTCGTATCTCCACTGGACATACGATCAAAACACAGGAAAACTCGACATAGCATTCAGACACTCAGGTATAACAAACACAAACCGATGGGTAGCATGGGCTATTAACCCAGACAAGGATCTCACATCTTCCATGAATGGAGCACAAGCTTTGGTTGCAATTCCACAATCTAGTGGAACTCCTAAAGCTTATACTTCATCAATTGCCGGTCCAGCGACACAATTAGCAGAGAGTAATATTAGTTATCCTCATTCAAGATTGAGTGCTACACATGAAAATAATGAGGTTACGATTTATGCAAGTATTACTCTTCCTGTTGGAACTACTACTTTGGTTCATCTTTGGCAAGATGGTGCTATGTCTGGTTCTACACCTCAAGCTCATGATATGACTAGTGCTAATACTCAATCTAAGGAGAGTTTGGATCTTCGTTCTGGTGCTTCTGAACAAGGATCAGGCGGTGGTTCTCTCAGTAGAAGAAGAAATACCCATGGAGTGCTAAATGCAATAAGCTGGGGAGTCTTGATGCCGTTGGGAGCTGTGATTGCAAGGTACTTGAAGGTGTTCAAGTCTGCAGACCCTGCTTGGTTTTACCTTCATGTTACCTGCCAATCAGCTGCCTATATAGTTGGTGTTGCTGGATGGGGTACCGGTCTCAAGCTTGGCAGTGACTCGGCTGGTGTTACATATTCAACTCATAGAACACTCGGGATCATCATCTTCTGCCTTGGAACCCTTCAGGTTTTTGCTCTGCTATTGAGGCCAAACAAAGATCACAAAATCAGATTCTACTGGAACCTTTACCATTGGGGTGTCGGATACGCAACTATCATCATCAGCATCATCAACATCTTTAAAGGGTTTGATGCCTTGGAGGTGTCTGCAGCAGATCGCTACGATAACTGGAAGCATGCGTACACTGGCATTATTGCAGCATTGGGTGGCGTTGCTGTACTTTTGGAAGCTTACACATGGATCATTGTGATCAAGAGGAAGAAATCAGAGAACAAGTTGCAAGGAATGAATGGAACAAATGGTAATGGATATGGTTCTAGGGTGTAG

Protein sequence

>Msa1424630

MVVNLRFMFLISIITTSLFVTTTLAQTTTQTQTCKSHNFTNNEVFTSCRDLPQLTSYLHWTYDQNTGKLDIAFRHSGITNTNRWVAWAINPDKDLTSSMNGAQALVAIPQSSGTPKAYTSSIAGPATQLAESNISYPHSRLSATHENNEVTIYASITLPVGTTTLVHLWQDGAMSGSTPQAHDMTSANTQSKESLDLRSGASEQGSGGGSLSRRRNTHGVLNAISWGVLMPLGAVIARYLKVFKSADPAWFYLHVTCQSAAYIVGVAGWGTGLKLGSDSAGVTYSTHRTLGIIIFCLGTLQVFALLLRPNKDHKIRFYWNLYHWGVGYATIIISIINIFKGFDALEVSAADRYDNWKHAYTGIIAALGGVAVLLEAYTWIIVIKRKKSENKLQGMNGTNGNGYGSRV*