Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1293550 | XP_003628547.1 | 84.797 | 296 | 9 | 2 | 1 | 260 | 1 | 296 | 1.23e-173 | 490 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1293550 | sp|Q45223|HBD_BRADU | 47.872 | 282 | 111 | 2 | 2 | 247 | 3 | 284 | 1.30e-88 | 267 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1293550 | G7LDR5 | 84.797 | 296 | 9 | 2 | 1 | 260 | 1 | 296 | 5.90e-174 | 490 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1244630 | Msa1293550 | 0.803837 | 2.881242e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1293550 | MtrunA17_Chr8g0360311 | 84.797 | 296 | 9 | 2 | 1 | 260 | 1 | 296 | 1.14e-177 | 490 |
| Msa1293550 | MtrunA17_Chr6g0485841 | 30.405 | 296 | 163 | 7 | 3 | 260 | 305 | 595 | 1.91e-26 | 107 |
| Msa1293550 | MtrunA17_Chr4g0067521 | 27.586 | 290 | 165 | 7 | 4 | 254 | 310 | 593 | 2.27e-21 | 93.2 |
| Msa1293550 | MtrunA17_Chr2g0295671 | 25.517 | 290 | 171 | 7 | 4 | 254 | 308 | 591 | 3.57e-19 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1293550 | AT3G15290.1 | 62.162 | 296 | 74 | 3 | 1 | 260 | 1 | 294 | 1.60e-130 | 371 |
| Msa1293550 | AT3G15290.2 | 65.652 | 230 | 57 | 3 | 50 | 260 | 9 | 235 | 9.28e-106 | 306 |
| Msa1293550 | AT4G29010.1 | 27.645 | 293 | 173 | 5 | 4 | 260 | 309 | 598 | 2.45e-25 | 105 |
| Msa1293550 | AT3G06860.1 | 25.952 | 289 | 169 | 7 | 4 | 253 | 312 | 594 | 1.10e-19 | 88.6 |
Find 69 sgRNAs with CRISPR-Local
Find 388 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTAAGTCTTCTGCTATTT+TGG | 0.170781 | 8_3:-50748779 | Msa1293550:CDS |
| TCCCGTGTCAATATCCTCTT+TGG | 0.290455 | 8_3:+50744984 | None:intergenic |
| ATCTCAATCAATTTCATCAT+TGG | 0.302650 | 8_3:+50748091 | None:intergenic |
| AGATTGAGAGAGTTGGGATT+TGG | 0.319886 | 8_3:+50748936 | None:intergenic |
| ATAACCTCCCAGGATTATTC+AGG | 0.326545 | 8_3:-50745078 | Msa1293550:CDS |
| TCTCAATCAATTTCATCATT+GGG | 0.329175 | 8_3:+50748092 | None:intergenic |
| CTTCTCGTCTCTAAAATGTT+TGG | 0.360620 | 8_3:-50744738 | Msa1293550:exon |
| GTGAAGATGATCGGCGTGAT+AGG | 0.361456 | 8_3:-50749093 | Msa1293550:CDS |
| CCACACTTGTACTGAACTTT+GGG | 0.364816 | 8_3:-50744688 | Msa1293550:three_prime_UTR |
| TTTGGAAAGAAGACGGTTGA+TGG | 0.367780 | 8_3:+50748954 | None:intergenic |
| TCTAAAATGTTTGGTTTCCT+TGG | 0.368515 | 8_3:-50744729 | Msa1293550:exon |
| ACCACACTTGTACTGAACTT+TGG | 0.372128 | 8_3:-50744689 | Msa1293550:three_prime_UTR |
| CGTGATAGGCGGTGGGCAGA+TGG | 0.376266 | 8_3:-50749079 | Msa1293550:CDS |
| TAGAGCTTGCAGACTTCATT+GGG | 0.378385 | 8_3:-50744927 | Msa1293550:CDS |
| TTAGAGCTTGCAGACTTCAT+TGG | 0.379697 | 8_3:-50744928 | Msa1293550:CDS |
| AGCTGTAGATTGAGAGAGTT+GGG | 0.384191 | 8_3:+50748930 | None:intergenic |
| AAGTTCTTCATGCTGGCCTT+GGG | 0.385707 | 8_3:-50744879 | Msa1293550:CDS |
| AAAGTTCTTCATGCTGGCCT+TGG | 0.388355 | 8_3:-50744880 | Msa1293550:CDS |
| TGAAATGCTTCATTTATCAT+AGG | 0.392247 | 8_3:+50745030 | None:intergenic |
| CTTCATTTATCATAGGCATA+AGG | 0.408796 | 8_3:+50745037 | None:intergenic |
| ACGGTTGATGGAAGAAGAAA+TGG | 0.413751 | 8_3:+50748966 | None:intergenic |
| ATGAAGTCTGCAAGCTCTAA+AGG | 0.417991 | 8_3:+50744931 | None:intergenic |
| GGCGGTGGGCAGATGGGATC+AGG | 0.421643 | 8_3:-50749072 | Msa1293550:CDS |
| CTATGAAGCCTGAATAATCC+TGG | 0.456473 | 8_3:+50745070 | None:intergenic |
| TGCCATGCATGGCTGTCAGT+TGG | 0.466231 | 8_3:+50749043 | None:intergenic |
| TATGTTGATGCTGGCAGACT+TGG | 0.468053 | 8_3:-50744820 | Msa1293550:CDS |
| TATTGACACGGGAATGAAGT+TGG | 0.472291 | 8_3:-50744974 | Msa1293550:CDS |
| GGAAGAAGAAATGGAAGAAG+AGG | 0.475686 | 8_3:+50748975 | None:intergenic |
| TGAAGTCTGCAAGCTCTAAA+GGG | 0.476098 | 8_3:+50744932 | None:intergenic |
| CTTGGAAGAAAACGAGGTAT+TGG | 0.477660 | 8_3:-50744802 | Msa1293550:CDS |
| GCTTGCAGACTTCATTGGGT+TGG | 0.479670 | 8_3:-50744923 | Msa1293550:CDS |
| GTGATAGGCGGTGGGCAGAT+GGG | 0.481302 | 8_3:-50749078 | Msa1293550:CDS |
| GCCATGCATGGCTGTCAGTT+GGG | 0.491078 | 8_3:+50749044 | None:intergenic |
| ATCCTCTTTGGTTGCAACGT+TGG | 0.493711 | 8_3:+50744996 | None:intergenic |
| CTTGAGAGTTGACATCTAGA+AGG | 0.494520 | 8_3:+50749010 | None:intergenic |
| ATGATCGGCGTGATAGGCGG+TGG | 0.509523 | 8_3:-50749087 | Msa1293550:CDS |
| AAGCTGTAGATTGAGAGAGT+TGG | 0.516901 | 8_3:+50748929 | None:intergenic |
| CTCAATCAATTTCATCATTG+GGG | 0.526279 | 8_3:+50748093 | None:intergenic |
| GTTGGGATTTGGAAAGAAGA+CGG | 0.529522 | 8_3:+50748947 | None:intergenic |
| GCAAGCTCTAAAGGGCCCAT+TGG | 0.540034 | 8_3:+50744940 | None:intergenic |
| ATTGACACGGGAATGAAGTT+GGG | 0.542886 | 8_3:-50744973 | Msa1293550:CDS |
| GTGAATATTTATTGTCCCCA+AGG | 0.546668 | 8_3:+50744863 | None:intergenic |
| GCTCTAAAGGGCCCATTGGA+TGG | 0.546955 | 8_3:+50744944 | None:intergenic |
| TTGGGTACTAACCATCCAAT+GGG | 0.547062 | 8_3:-50744955 | Msa1293550:CDS |
| GCTGACAACTTATTCTTCCA+AGG | 0.549625 | 8_3:+50744712 | None:intergenic |
| ATAATGAAAGTTCTTCATGC+TGG | 0.552134 | 8_3:-50744886 | Msa1293550:CDS |
| CTTGTACAGTATGTTGATGC+TGG | 0.566110 | 8_3:-50744829 | Msa1293550:CDS |
| AGCTATTGTTGAATCTGAAG+AGG | 0.569249 | 8_3:-50748836 | Msa1293550:CDS |
| GTTGGGTACTAACCATCCAA+TGG | 0.577080 | 8_3:-50744956 | Msa1293550:CDS |
| AGTTCTTCATGCTGGCCTTG+GGG | 0.587304 | 8_3:-50744878 | Msa1293550:CDS |
| ATGGCGGATGTGAAGATGAT+CGG | 0.590191 | 8_3:-50749102 | Msa1293550:CDS |
| GGTACACTACTGAAATTGAG+TGG | 0.591243 | 8_3:-50744667 | Msa1293550:three_prime_UTR |
| TATGAAGCCTGAATAATCCT+GGG | 0.592603 | 8_3:+50745071 | None:intergenic |
| AAATGTCGCATCAGAAGTGT+CGG | 0.592943 | 8_3:+50748057 | None:intergenic |
| TCAACATACTGTACAAGTAG+AGG | 0.598353 | 8_3:+50744835 | None:intergenic |
| GCAGACGTCGATGCCATGCA+TGG | 0.599710 | 8_3:+50749032 | None:intergenic |
| CACCAACGTTGCAACCAAAG+AGG | 0.600124 | 8_3:-50744998 | Msa1293550:CDS |
| TACTGTACAAGTAGAGGGCA+AGG | 0.600994 | 8_3:+50744841 | None:intergenic |
| CAAGACAGTAATAACCTCCC+AGG | 0.607252 | 8_3:-50745088 | Msa1293550:CDS |
| ACCAAAGAGGATATTGACAC+GGG | 0.632566 | 8_3:-50744985 | Msa1293550:CDS |
| CCCAAAGTTCAGTACAAGTG+TGG | 0.646716 | 8_3:+50744688 | None:intergenic |
| TCAATCAATTTCATCATTGG+GGG | 0.648416 | 8_3:+50748094 | None:intergenic |
| CAACATACTGTACAAGTAGA+GGG | 0.650224 | 8_3:+50744836 | None:intergenic |
| AACCAAAGAGGATATTGACA+CGG | 0.650319 | 8_3:-50744986 | Msa1293550:CDS |
| AAGATGATCGGCGTGATAGG+CGG | 0.661602 | 8_3:-50749090 | Msa1293550:CDS |
| GGCAGACTTGGAAGAAAACG+AGG | 0.681439 | 8_3:-50744808 | Msa1293550:CDS |
| AAATTGATTGAGATTGTGCG+AGG | 0.718002 | 8_3:-50748082 | Msa1293550:CDS |
| GAAGCCTGAATAATCCTGGG+AGG | 0.727589 | 8_3:+50745074 | None:intergenic |
| CCACAAAAGCACTATCACAG+AGG | 0.763398 | 8_3:-50748030 | Msa1293550:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAATTATAATTATACATAG+TGG | + | chr8_3:50745745-50745764 | None:intergenic | 10.0% |
| !! | CTATTATAGAAAATTTATTA+TGG | + | chr8_3:50746840-50746859 | None:intergenic | 10.0% |
| !! | GAAAATTTATTATGGTTTAT+GGG | + | chr8_3:50746832-50746851 | None:intergenic | 15.0% |
| !! | AGAAAATTTATTATGGTTTA+TGG | + | chr8_3:50746833-50746852 | None:intergenic | 15.0% |
| !! | TAGAATATACAAAAACAAAA+TGG | - | chr8_3:50747845-50747864 | Msa1293550:intron | 15.0% |
| !!! | TTAAATTATGAGTATTTTGT+CGG | - | chr8_3:50748363-50748382 | Msa1293550:intron | 15.0% |
| !!! | CACAATTTTAATCTATCAAA+TGG | + | chr8_3:50745553-50745572 | None:intergenic | 20.0% |
| !! | ATTATAATTATACATAGTGG+AGG | + | chr8_3:50745742-50745761 | None:intergenic | 20.0% |
| !! | GGATATTTAGATTTGATAAA+GGG | + | chr8_3:50747484-50747503 | None:intergenic | 20.0% |
| !! | AGGATATTTAGATTTGATAA+AGG | + | chr8_3:50747485-50747504 | None:intergenic | 20.0% |
| !!! | CATGAACTTTTTAAATAATG+TGG | - | chr8_3:50748088-50748107 | Msa1293550:CDS | 20.0% |
| !!! | TAAATTATGAGTATTTTGTC+GGG | - | chr8_3:50748364-50748383 | Msa1293550:intron | 20.0% |
| !! | TAGCAATATATTACATTCTA+GGG | + | chr8_3:50748407-50748426 | None:intergenic | 20.0% |
| !! | ATAGCAATATATTACATTCT+AGG | + | chr8_3:50748408-50748427 | None:intergenic | 20.0% |
| !! | TTAAAGGTAATTAAGCATAA+AGG | + | chr8_3:50748475-50748494 | None:intergenic | 20.0% |
| ! | AAAAAAGAAGAAGAAGAAGA+AGG | + | chr8_3:50745034-50745053 | None:intergenic | 25.0% |
| ! | CCGTTTACAATTTATGTTTA+CGG | + | chr8_3:50745241-50745260 | None:intergenic | 25.0% |
| ! | CCGTAAACATAAATTGTAAA+CGG | - | chr8_3:50745238-50745257 | Msa1293550:intron | 25.0% |
| ! | CGTAAACATAAATTGTAAAC+GGG | - | chr8_3:50745239-50745258 | Msa1293550:intron | 25.0% |
| ! | TTCTCTGAATGAAAAAATGT+AGG | + | chr8_3:50745266-50745285 | None:intergenic | 25.0% |
| ! | AAAAATTGCTAAACCAAATG+TGG | + | chr8_3:50745517-50745536 | None:intergenic | 25.0% |
| !!! | ACATTTGGTTTAGCAATTTT+TGG | - | chr8_3:50745516-50745535 | Msa1293550:intron | 25.0% |
| ! | TCTATCAAATGGAAAACAAT+AGG | + | chr8_3:50745542-50745561 | None:intergenic | 25.0% |
| ! | TCTCAATCAATTTCATCATT+GGG | + | chr8_3:50745633-50745652 | None:intergenic | 25.0% |
| ! | ATCTCAATCAATTTCATCAT+TGG | + | chr8_3:50745634-50745653 | None:intergenic | 25.0% |
| !!! | AATTGTTCTACTGTTTCTAT+TGG | + | chr8_3:50745944-50745963 | None:intergenic | 25.0% |
| ! | TAGTAAATAACAGTGTGAAT+TGG | - | chr8_3:50745965-50745984 | Msa1293550:intron | 25.0% |
| !! | TATTGAAAATTTTCTTGGTC+TGG | + | chr8_3:50746057-50746076 | None:intergenic | 25.0% |
| !! | GAGGTTATTGAAAATTTTCT+TGG | + | chr8_3:50746062-50746081 | None:intergenic | 25.0% |
| !!! | TTCTTCTTTTTCAAACATTC+TGG | - | chr8_3:50746347-50746366 | Msa1293550:intron | 25.0% |
| !!! | ATAAAGTGCTAAGACTTTTT+TGG | - | chr8_3:50746487-50746506 | Msa1293550:intron | 25.0% |
| ! | CAAAATGGTTTAGAAAAATC+CGG | - | chr8_3:50746708-50746727 | Msa1293550:intron | 25.0% |
| ! | AATCTAAATATCCTAAATCC+AGG | - | chr8_3:50747491-50747510 | Msa1293550:intron | 25.0% |
| ! | ACCTATCAAATATATAACGT+AGG | - | chr8_3:50747969-50747988 | Msa1293550:intron | 25.0% |
| ! | ACCTACGTTATATATTTGAT+AGG | + | chr8_3:50747973-50747992 | None:intergenic | 25.0% |
| ! | GAGGATAACTAAACAAAAAA+AGG | + | chr8_3:50748117-50748136 | None:intergenic | 25.0% |
| !!! | TTTTTGTTTAGTTATCCTCT+AGG | - | chr8_3:50748118-50748137 | Msa1293550:intron | 25.0% |
| ! | CATATGAAAATTCACCATTT+GGG | + | chr8_3:50748201-50748220 | None:intergenic | 25.0% |
| !!! | TCTAGGGTTAATTACATTTT+CGG | + | chr8_3:50748391-50748410 | None:intergenic | 25.0% |
| !!! | ATTGTTTTTATAATTTGCGC+TGG | - | chr8_3:50748588-50748607 | Msa1293550:intron | 25.0% |
| ! | TGAAATGCTTCATTTATCAT+AGG | + | chr8_3:50748695-50748714 | None:intergenic | 25.0% |
| AGAGAGGTCATTTAAATTAG+TGG | + | chr8_3:50744846-50744865 | None:intergenic | 30.0% | |
| GATCAGTTAAAATTTACACG+AGG | + | chr8_3:50745384-50745403 | None:intergenic | 30.0% | |
| TCAATCAATTTCATCATTGG+GGG | + | chr8_3:50745631-50745650 | None:intergenic | 30.0% | |
| CTCAATCAATTTCATCATTG+GGG | + | chr8_3:50745632-50745651 | None:intergenic | 30.0% | |
| ! | TAATTATACATAGTGGAGGA+TGG | + | chr8_3:50745738-50745757 | None:intergenic | 30.0% |
| GAACTAATTGTCAATGTATG+TGG | - | chr8_3:50745900-50745919 | Msa1293550:intron | 30.0% | |
| ! | AATTGGGAAGCTAAACTTTT+GGG | + | chr8_3:50746432-50746451 | None:intergenic | 30.0% |
| !!! | CTGTTTTGATGCAAAACAAA+AGG | + | chr8_3:50746653-50746672 | None:intergenic | 30.0% |
| GAAAATAGCTAAACCATTGA+AGG | + | chr8_3:50746810-50746829 | None:intergenic | 30.0% | |
| !! | GATGATGAGTATTGATTATG+GGG | + | chr8_3:50746977-50746996 | None:intergenic | 30.0% |
| !! | GGATGATGAGTATTGATTAT+GGG | + | chr8_3:50746978-50746997 | None:intergenic | 30.0% |
| !! | TGGATGATGAGTATTGATTA+TGG | + | chr8_3:50746979-50746998 | None:intergenic | 30.0% |
| ATAATCAATACTCATCATCC+AGG | - | chr8_3:50746978-50746997 | Msa1293550:intron | 30.0% | |
| GCAAAATATGTTTGGATCAA+GGG | + | chr8_3:50747067-50747086 | None:intergenic | 30.0% | |
| TGCAAAATATGTTTGGATCA+AGG | + | chr8_3:50747068-50747087 | None:intergenic | 30.0% | |
| AAACAGGTGCAAAATATGTT+TGG | + | chr8_3:50747075-50747094 | None:intergenic | 30.0% | |
| !! | TTTTGCACCTGTTTTTCTAT+CGG | - | chr8_3:50747081-50747100 | Msa1293550:intron | 30.0% |
| ! | ATATGATTCTGAGTTTTCCT+TGG | + | chr8_3:50747415-50747434 | None:intergenic | 30.0% |
| ! | TTTAGGAAGTGACTTTTGAT+TGG | + | chr8_3:50747442-50747461 | None:intergenic | 30.0% |
| CCTACATACATAAACATTGT+GGG | + | chr8_3:50747749-50747768 | None:intergenic | 30.0% | |
| ACCTACATACATAAACATTG+TGG | + | chr8_3:50747750-50747769 | None:intergenic | 30.0% | |
| GATATATGAGAAGAATCCTA+TGG | - | chr8_3:50747792-50747811 | Msa1293550:intron | 30.0% | |
| ACAGAATTGATAGAGTCATA+AGG | + | chr8_3:50747939-50747958 | None:intergenic | 30.0% | |
| !! | TCATTCCATGTTTCTAGAAT+TGG | - | chr8_3:50748009-50748028 | Msa1293550:intron | 30.0% |
| GCATATGAAAATTCACCATT+TGG | + | chr8_3:50748202-50748221 | None:intergenic | 30.0% | |
| ! | TGGTGAATTTTCATATGCAT+TGG | - | chr8_3:50748204-50748223 | Msa1293550:intron | 30.0% |
| ! | GGTGAATTTTCATATGCATT+GGG | - | chr8_3:50748205-50748224 | Msa1293550:intron | 30.0% |
| CTAAATCTTTCTTCCAAGTT+TGG | + | chr8_3:50748331-50748350 | None:intergenic | 30.0% | |
| CTTCATTTATCATAGGCATA+AGG | + | chr8_3:50748688-50748707 | None:intergenic | 30.0% | |
| ATAATGAAAGTTCTTCATGC+TGG | - | chr8_3:50748836-50748855 | Msa1293550:CDS | 30.0% | |
| !! | GAAGATGATTTTGAAGACTT+TGG | + | chr8_3:50748968-50748987 | None:intergenic | 30.0% |
| ! | TCTAAAATGTTTGGTTTCCT+TGG | - | chr8_3:50748993-50749012 | Msa1293550:CDS | 30.0% |
| TAATGAAATCAGCAACAGAG+AGG | + | chr8_3:50744862-50744881 | None:intergenic | 35.0% | |
| AGCTATTGTTGAATCTGAAG+AGG | - | chr8_3:50744886-50744905 | Msa1293550:CDS | 35.0% | |
| !! | TGCTAAGTCTTCTGCTATTT+TGG | - | chr8_3:50744943-50744962 | Msa1293550:CDS | 35.0% |
| AGCTAAATGAGTGATAGAGA+TGG | + | chr8_3:50744984-50745003 | None:intergenic | 35.0% | |
| ! | ATTTAGCTTCTTCTACCACA+AGG | - | chr8_3:50744996-50745015 | Msa1293550:CDS | 35.0% |
| ! | ACAATTGTCTTTTCCACTGT+TGG | - | chr8_3:50745097-50745116 | Msa1293550:CDS | 35.0% |
| TATGTTTACGGCCAATTCTA+TGG | + | chr8_3:50745229-50745248 | None:intergenic | 35.0% | |
| TGGGTCCCATATCAATTTAA+TGG | - | chr8_3:50745357-50745376 | Msa1293550:intron | 35.0% | |
| GGGTCCCATATCAATTTAAT+GGG | - | chr8_3:50745358-50745377 | Msa1293550:intron | 35.0% | |
| GAGGCCCATTAAATTGATAT+GGG | + | chr8_3:50745365-50745384 | None:intergenic | 35.0% | |
| GCAAGCATGGCTTATATAAT+TGG | + | chr8_3:50745460-50745479 | None:intergenic | 35.0% | |
| GAACTCATTTGATCATGACT+TGG | + | chr8_3:50745495-50745514 | None:intergenic | 35.0% | |
| GATCAAATGAGTTCCACATT+TGG | - | chr8_3:50745501-50745520 | Msa1293550:intron | 35.0% | |
| ! | TGTTTTGTGCCTTATCTACT+AGG | - | chr8_3:50745579-50745598 | Msa1293550:intron | 35.0% |
| TTCCTATCACCTAGTAGATA+AGG | + | chr8_3:50745591-50745610 | None:intergenic | 35.0% | |
| AAATTGATTGAGATTGTGCG+AGG | - | chr8_3:50745640-50745659 | Msa1293550:intron | 35.0% | |
| AATGTGAATGTTACCTGTGT+TGG | - | chr8_3:50745864-50745883 | Msa1293550:intron | 35.0% | |
| !! | TACTGTTTCTATTGGTGGAT+GGG | + | chr8_3:50745936-50745955 | None:intergenic | 35.0% |
| !! | TGTTCTACTGTTTCTATTGG+TGG | + | chr8_3:50745941-50745960 | None:intergenic | 35.0% |
| !!! | AGGGGTTATTTTAGCAGTTT+GGG | + | chr8_3:50746094-50746113 | None:intergenic | 35.0% |
| !!! | AAGGGGTTATTTTAGCAGTT+TGG | + | chr8_3:50746095-50746114 | None:intergenic | 35.0% |
| CGTTGAATATACTCTCCATA+TGG | - | chr8_3:50746195-50746214 | Msa1293550:intron | 35.0% | |
| AAAAAGAAGAACTGACGACA+AGG | + | chr8_3:50746338-50746357 | None:intergenic | 35.0% | |
| ! | TCAATGTCATTTACAAGCCA+GGG | + | chr8_3:50746401-50746420 | None:intergenic | 35.0% |
| ! | TTCAATGTCATTTACAAGCC+AGG | + | chr8_3:50746402-50746421 | None:intergenic | 35.0% |
| ! | GAATTGGGAAGCTAAACTTT+TGG | + | chr8_3:50746433-50746452 | None:intergenic | 35.0% |
| GCTGAATAACGAACAGAATT+GGG | + | chr8_3:50746448-50746467 | None:intergenic | 35.0% | |
| AGCTGAATAACGAACAGAAT+TGG | + | chr8_3:50746449-50746468 | None:intergenic | 35.0% | |
| CAACAAAATTCCTACCCAAA+AGG | - | chr8_3:50746521-50746540 | Msa1293550:intron | 35.0% | |
| AAAATTCCTACCCAAAAGGT+AGG | - | chr8_3:50746525-50746544 | Msa1293550:intron | 35.0% | |
| GCATCACATCAATCTCAAAA+TGG | - | chr8_3:50746693-50746712 | Msa1293550:intron | 35.0% | |
| TACCTTCTCAAGATCTTCAA+AGG | - | chr8_3:50746755-50746774 | Msa1293550:intron | 35.0% | |
| ! | AACCTTTGAAGATCTTGAGA+AGG | + | chr8_3:50746760-50746779 | None:intergenic | 35.0% |
| AACCATTGAAGGCTTTCAAT+GGG | + | chr8_3:50746799-50746818 | None:intergenic | 35.0% | |
| AAACCATTGAAGGCTTTCAA+TGG | + | chr8_3:50746800-50746819 | None:intergenic | 35.0% | |
| GTGAAGAAAAAGATGATTCC+TGG | + | chr8_3:50746999-50747018 | None:intergenic | 35.0% | |
| ! | TTTTTCTTCACTATGATCGC+AGG | - | chr8_3:50747008-50747027 | Msa1293550:intron | 35.0% |
| ! | TTTTCTTCACTATGATCGCA+GGG | - | chr8_3:50747009-50747028 | Msa1293550:intron | 35.0% |
| !! | GGGTTTTCAAGGAATTGAAA+GGG | + | chr8_3:50747206-50747225 | None:intergenic | 35.0% |
| ACTTTGTTACATAGCCTGTT+GGG | + | chr8_3:50747320-50747339 | None:intergenic | 35.0% | |
| AACTTTGTTACATAGCCTGT+TGG | + | chr8_3:50747321-50747340 | None:intergenic | 35.0% | |
| GGCTATGTAACAAAGTTAAC+TGG | - | chr8_3:50747324-50747343 | Msa1293550:intron | 35.0% | |
| !! | TCTCTCATTTTTGTAACCCT+CGG | - | chr8_3:50747356-50747375 | Msa1293550:intron | 35.0% |
| ! | ATTCTGAGTTTTCCTTGGAA+GGG | + | chr8_3:50747410-50747429 | None:intergenic | 35.0% |
| CAGCTTGGATGAAACAATTT+AGG | + | chr8_3:50747459-50747478 | None:intergenic | 35.0% | |
| ATCCTAAATCCAGGATATAG+AGG | - | chr8_3:50747500-50747519 | Msa1293550:intron | 35.0% | |
| ATGAAGGGGGAAAGATTAAA+GGG | + | chr8_3:50747578-50747597 | None:intergenic | 35.0% | |
| ACACTATTCAAAGATGAAGG+GGG | + | chr8_3:50747591-50747610 | None:intergenic | 35.0% | |
| CACACTATTCAAAGATGAAG+GGG | + | chr8_3:50747592-50747611 | None:intergenic | 35.0% | |
| CCACACTATTCAAAGATGAA+GGG | + | chr8_3:50747593-50747612 | None:intergenic | 35.0% | |
| ACCACACTATTCAAAGATGA+AGG | + | chr8_3:50747594-50747613 | None:intergenic | 35.0% | |
| TATTCAAGGACGAAGAAAGT+GGG | + | chr8_3:50747635-50747654 | None:intergenic | 35.0% | |
| ATGTGGGTCAGAATTGTAAT+AGG | + | chr8_3:50747676-50747695 | None:intergenic | 35.0% | |
| ACATACATAAACATTGTGGG+TGG | + | chr8_3:50747746-50747765 | None:intergenic | 35.0% | |
| CCCACAATGTTTATGTATGT+AGG | - | chr8_3:50747746-50747765 | Msa1293550:intron | 35.0% | |
| !! | GAATCCTATGGTTTTGCATA+TGG | - | chr8_3:50747804-50747823 | Msa1293550:intron | 35.0% |
| TTGTCCATATGCAAAACCAT+AGG | + | chr8_3:50747811-50747830 | None:intergenic | 35.0% | |
| GGTAAAAGAGTGATGCATTT+CGG | + | chr8_3:50747918-50747937 | None:intergenic | 35.0% | |
| ! | AGTGACCAATTCTAGAAACA+TGG | + | chr8_3:50748017-50748036 | None:intergenic | 35.0% |
| !! | ATGTTTCTAGAATTGGTCAC+TGG | - | chr8_3:50748016-50748035 | Msa1293550:intron | 35.0% |
| GACTAGAAAAACAGAACTAC+AGG | - | chr8_3:50748052-50748071 | Msa1293550:CDS | 35.0% | |
| GATTAATCCATTCGAGAATC+TGG | - | chr8_3:50748153-50748172 | Msa1293550:intron | 35.0% | |
| !! | AGAATCTGGAGAGCATTTAA+GGG | - | chr8_3:50748167-50748186 | Msa1293550:intron | 35.0% |
| ! | TCCTAGAAGCACATAATAAG+TGG | - | chr8_3:50748301-50748320 | Msa1293550:intron | 35.0% |
| ! | CCTAGAAGCACATAATAAGT+GGG | - | chr8_3:50748302-50748321 | Msa1293550:intron | 35.0% |
| AAAGAGGATATGCAGGTTAA+AGG | + | chr8_3:50748491-50748510 | None:intergenic | 35.0% | |
| TTTAACCTGCATATCCTCTT+TGG | - | chr8_3:50748490-50748509 | Msa1293550:intron | 35.0% | |
| GGAAAAGAAGAAAACCAAAG+AGG | + | chr8_3:50748507-50748526 | None:intergenic | 35.0% | |
| !!! | TTTGGTTTTCTTCTTTTCCC+TGG | - | chr8_3:50748508-50748527 | Msa1293550:intron | 35.0% |
| ATGAAACAGAAGAATCTCAG+AGG | + | chr8_3:50748535-50748554 | None:intergenic | 35.0% | |
| TCTTCTTATTCAAGACAGCT+AGG | - | chr8_3:50748555-50748574 | Msa1293550:intron | 35.0% | |
| TTCAATATGTATTGCAGGCT+TGG | - | chr8_3:50748611-50748630 | Msa1293550:intron | 35.0% | |
| TATGAAGCCTGAATAATCCT+GGG | + | chr8_3:50748654-50748673 | None:intergenic | 35.0% | |
| AACCAAAGAGGATATTGACA+CGG | - | chr8_3:50748736-50748755 | Msa1293550:intron | 35.0% | |
| GTGAATATTTATTGTCCCCA+AGG | + | chr8_3:50748862-50748881 | None:intergenic | 35.0% | |
| CAACATACTGTACAAGTAGA+GGG | + | chr8_3:50748889-50748908 | None:intergenic | 35.0% | |
| TCAACATACTGTACAAGTAG+AGG | + | chr8_3:50748890-50748909 | None:intergenic | 35.0% | |
| !! | CTTCTCGTCTCTAAAATGTT+TGG | - | chr8_3:50748984-50749003 | Msa1293550:CDS | 35.0% |
| CTTGAGAGTTGACATCTAGA+AGG | + | chr8_3:50744715-50744734 | None:intergenic | 40.0% | |
| GGAAGAAGAAATGGAAGAAG+AGG | + | chr8_3:50744750-50744769 | None:intergenic | 40.0% | |
| !! | ACGGTTGATGGAAGAAGAAA+TGG | + | chr8_3:50744759-50744778 | None:intergenic | 40.0% |
| TTTGGAAAGAAGACGGTTGA+TGG | + | chr8_3:50744771-50744790 | None:intergenic | 40.0% | |
| GTTGGGATTTGGAAAGAAGA+CGG | + | chr8_3:50744778-50744797 | None:intergenic | 40.0% | |
| AGATTGAGAGAGTTGGGATT+TGG | + | chr8_3:50744789-50744808 | None:intergenic | 40.0% | |
| AGCTGTAGATTGAGAGAGTT+GGG | + | chr8_3:50744795-50744814 | None:intergenic | 40.0% | |
| AAGCTGTAGATTGAGAGAGT+TGG | + | chr8_3:50744796-50744815 | None:intergenic | 40.0% | |
| ! | GTGACTTTTTGATCCAACAG+TGG | + | chr8_3:50745113-50745132 | None:intergenic | 40.0% |
| TCACTTGTGCACCATAGAAT+TGG | - | chr8_3:50745215-50745234 | Msa1293550:intron | 40.0% | |
| CGAGGCCCATTAAATTGATA+TGG | + | chr8_3:50745366-50745385 | None:intergenic | 40.0% | |
| TGCCTTATCTACTAGGTGAT+AGG | - | chr8_3:50745586-50745605 | Msa1293550:intron | 40.0% | |
| ATCAATTTCATCATTGGGGG+AGG | + | chr8_3:50745628-50745647 | None:intergenic | 40.0% | |
| ! | AAATGTCGCATCAGAAGTGT+CGG | + | chr8_3:50745668-50745687 | None:intergenic | 40.0% |
| !! | CACATTTTTCAGAGAACAGC+AGG | + | chr8_3:50745850-50745869 | None:intergenic | 40.0% |
| ! | GAATGTTACCTGTGTTGGTA+TGG | - | chr8_3:50745869-50745888 | Msa1293550:intron | 40.0% |
| !! | CTACTGTTTCTATTGGTGGA+TGG | + | chr8_3:50745937-50745956 | None:intergenic | 40.0% |
| TTAGCAGTTTGGGAAAGAAG+AGG | + | chr8_3:50746084-50746103 | None:intergenic | 40.0% | |
| ACAATCGGGGTAACAGTTAA+GGG | + | chr8_3:50746113-50746132 | None:intergenic | 40.0% | |
| CGAAAAAGAAAGTGAACCCA+AGG | + | chr8_3:50746177-50746196 | None:intergenic | 40.0% | |
| GAATATACTCTCCATATGGC+AGG | - | chr8_3:50746199-50746218 | Msa1293550:intron | 40.0% | |
| AATTCAATAGGCCTGCCATA+TGG | + | chr8_3:50746213-50746232 | None:intergenic | 40.0% | |
| AGCATGGGTCAGAATTCAAT+AGG | + | chr8_3:50746225-50746244 | None:intergenic | 40.0% | |
| TTCTGTTCGTTATTCAGCTG+TGG | - | chr8_3:50746450-50746469 | Msa1293550:intron | 40.0% | |
| AGCCATCAATTCCTTCTCAT+AGG | - | chr8_3:50746575-50746594 | Msa1293550:intron | 40.0% | |
| CACCTATGAGAAGGAATTGA+TGG | + | chr8_3:50746580-50746599 | None:intergenic | 40.0% | |
| CATCAATTCCTTCTCATAGG+TGG | - | chr8_3:50746578-50746597 | Msa1293550:intron | 40.0% | |
| GAACAAATCCACCTATGAGA+AGG | + | chr8_3:50746589-50746608 | None:intergenic | 40.0% | |
| GCCTTGCTGAAATACGAAAT+AGG | - | chr8_3:50746627-50746646 | Msa1293550:intron | 40.0% | |
| GCCTATTTCGTATTTCAGCA+AGG | + | chr8_3:50746631-50746650 | None:intergenic | 40.0% | |
| !!! | TCAAAGGTTTTGAGAGCTTC+AGG | - | chr8_3:50746771-50746790 | Msa1293550:intron | 40.0% |
| TAAATACCCCATTCCAGTAG+TGG | + | chr8_3:50746929-50746948 | None:intergenic | 40.0% | |
| ! | ACTGGAATGGGGTATTTATC+TGG | - | chr8_3:50746931-50746950 | Msa1293550:intron | 40.0% |
| TGATTATGGGGAGCTAAACA+AGG | + | chr8_3:50746965-50746984 | None:intergenic | 40.0% | |
| TGTTTGGATCAAGGGATCAT+TGG | + | chr8_3:50747059-50747078 | None:intergenic | 40.0% | |
| CAAAGGTCCGATAGAAAAAC+AGG | + | chr8_3:50747091-50747110 | None:intergenic | 40.0% | |
| ! | GTTTTTCTATCGGACCTTTG+TGG | - | chr8_3:50747091-50747110 | Msa1293550:intron | 40.0% |
| ! | ACAGAATTGAGTTGCAAGAG+GGG | + | chr8_3:50747158-50747177 | None:intergenic | 40.0% |
| ! | CACAGAATTGAGTTGCAAGA+GGG | + | chr8_3:50747159-50747178 | None:intergenic | 40.0% |
| ! | TCACAGAATTGAGTTGCAAG+AGG | + | chr8_3:50747160-50747179 | None:intergenic | 40.0% |
| !! | GGGGTTTTCAAGGAATTGAA+AGG | + | chr8_3:50747207-50747226 | None:intergenic | 40.0% |
| ! | ACAGTATGAAGGGGTTTTCA+AGG | + | chr8_3:50747217-50747236 | None:intergenic | 40.0% |
| TTTGTTACATAGCCTGTTGG+GGG | + | chr8_3:50747318-50747337 | None:intergenic | 40.0% | |
| CTTTGTTACATAGCCTGTTG+GGG | + | chr8_3:50747319-50747338 | None:intergenic | 40.0% | |
| ATTACACGGAGTAAATCCGA+GGG | + | chr8_3:50747375-50747394 | None:intergenic | 40.0% | |
| AATTACACGGAGTAAATCCG+AGG | + | chr8_3:50747376-50747395 | None:intergenic | 40.0% | |
| GGAGAGGTGATTGAATTACA+CGG | + | chr8_3:50747389-50747408 | None:intergenic | 40.0% | |
| ! | GATTCTGAGTTTTCCTTGGA+AGG | + | chr8_3:50747411-50747430 | None:intergenic | 40.0% |
| ATTTGATAAAGGGAGCAGCT+TGG | + | chr8_3:50747474-50747493 | None:intergenic | 40.0% | |
| TGCCTCTATATCCTGGATTT+AGG | + | chr8_3:50747505-50747524 | None:intergenic | 40.0% | |
| TGTTGAATGCCTCTATATCC+TGG | + | chr8_3:50747512-50747531 | None:intergenic | 40.0% | |
| GATGAAGGGGGAAAGATTAA+AGG | + | chr8_3:50747579-50747598 | None:intergenic | 40.0% | |
| CCCTTCATCTTTGAATAGTG+TGG | - | chr8_3:50747590-50747609 | Msa1293550:intron | 40.0% | |
| ATTCAAGGACGAAGAAAGTG+GGG | + | chr8_3:50747634-50747653 | None:intergenic | 40.0% | |
| CTATTCAAGGACGAAGAAAG+TGG | + | chr8_3:50747636-50747655 | None:intergenic | 40.0% | |
| TCACATGGAGAGTCTATTCA+AGG | + | chr8_3:50747649-50747668 | None:intergenic | 40.0% | |
| ATTGTAATAGGCCTGTCACA+TGG | + | chr8_3:50747664-50747683 | None:intergenic | 40.0% | |
| ! | TTGGTCACTGGCACTATTTT+TGG | - | chr8_3:50748028-50748047 | Msa1293550:intron | 40.0% |
| ATCTTTGCAGTTATGCCTAG+AGG | + | chr8_3:50748136-50748155 | None:intergenic | 40.0% | |
| !! | GAGAATCTGGAGAGCATTTA+AGG | - | chr8_3:50748166-50748185 | Msa1293550:intron | 40.0% |
| GAAAATTCACCATTTGGGAG+AGG | + | chr8_3:50748196-50748215 | None:intergenic | 40.0% | |
| !! | CTTGTTTTTCACTGGTTGGA+CGG | + | chr8_3:50748270-50748289 | None:intergenic | 40.0% |
| !! | GTCACTTGTTTTTCACTGGT+TGG | + | chr8_3:50748274-50748293 | None:intergenic | 40.0% |
| ACCAGTGAAAAACAAGTGAC+AGG | - | chr8_3:50748274-50748293 | Msa1293550:intron | 40.0% | |
| CCCACTTATTATGTGCTTCT+AGG | + | chr8_3:50748305-50748324 | None:intergenic | 40.0% | |
| GAAAACCAAAGAGGATATGC+AGG | + | chr8_3:50748498-50748517 | None:intergenic | 40.0% | |
| ! | GCTGGTTCAATATGTATTGC+AGG | - | chr8_3:50748606-50748625 | Msa1293550:intron | 40.0% |
| ATAACCTCCCAGGATTATTC+AGG | - | chr8_3:50748644-50748663 | Msa1293550:intron | 40.0% | |
| CTATGAAGCCTGAATAATCC+TGG | + | chr8_3:50748655-50748674 | None:intergenic | 40.0% | |
| ACCAAAGAGGATATTGACAC+GGG | - | chr8_3:50748737-50748756 | Msa1293550:intron | 40.0% | |
| TATTGACACGGGAATGAAGT+TGG | - | chr8_3:50748748-50748767 | Msa1293550:intron | 40.0% | |
| ATTGACACGGGAATGAAGTT+GGG | - | chr8_3:50748749-50748768 | Msa1293550:intron | 40.0% | |
| TTGGGTACTAACCATCCAAT+GGG | - | chr8_3:50748767-50748786 | Msa1293550:CDS | 40.0% | |
| !! | TGAAGTCTGCAAGCTCTAAA+GGG | + | chr8_3:50748793-50748812 | None:intergenic | 40.0% |
| ! | ATGAAGTCTGCAAGCTCTAA+AGG | + | chr8_3:50748794-50748813 | None:intergenic | 40.0% |
| TTAGAGCTTGCAGACTTCAT+TGG | - | chr8_3:50748794-50748813 | Msa1293550:CDS | 40.0% | |
| TAGAGCTTGCAGACTTCATT+GGG | - | chr8_3:50748795-50748814 | Msa1293550:CDS | 40.0% | |
| CTTGTACAGTATGTTGATGC+TGG | - | chr8_3:50748893-50748912 | Msa1293550:intron | 40.0% | |
| CTTGGAAGAAAACGAGGTAT+TGG | - | chr8_3:50748920-50748939 | Msa1293550:CDS | 40.0% | |
| GCTGACAACTTATTCTTCCA+AGG | + | chr8_3:50749013-50749032 | None:intergenic | 40.0% | |
| ACCACACTTGTACTGAACTT+TGG | - | chr8_3:50749033-50749052 | Msa1293550:CDS | 40.0% | |
| CCACACTTGTACTGAACTTT+GGG | - | chr8_3:50749034-50749053 | Msa1293550:CDS | 40.0% | |
| GGTACACTACTGAAATTGAG+TGG | - | chr8_3:50749055-50749074 | Msa1293550:CDS | 40.0% | |
| !! | ATGGCGGATGTGAAGATGAT+CGG | - | chr8_3:50744620-50744639 | Msa1293550:three_prime_UTR | 45.0% |
| GAAGAAGAAGGAACCTGTTG+AGG | + | chr8_3:50745022-50745041 | None:intergenic | 45.0% | |
| ATGTGTCCCACCAAATCATG+TGG | - | chr8_3:50745337-50745356 | Msa1293550:intron | 45.0% | |
| TGTGTCCCACCAAATCATGT+GGG | - | chr8_3:50745338-50745357 | Msa1293550:intron | 45.0% | |
| GATATGGGACCCACATGATT+TGG | + | chr8_3:50745350-50745369 | None:intergenic | 45.0% | |
| ! | GCTGATTCTAGAAGCAAGCA+TGG | + | chr8_3:50745473-50745492 | None:intergenic | 45.0% |
| !! | CCTCTGTGATAGTGCTTTTG+TGG | + | chr8_3:50745695-50745714 | None:intergenic | 45.0% |
| !! | CCACAAAAGCACTATCACAG+AGG | - | chr8_3:50745692-50745711 | Msa1293550:intron | 45.0% |
| ! | CATAGTGGAGGATGGTATCA+AGG | + | chr8_3:50745730-50745749 | None:intergenic | 45.0% |
| GAGAACAGCAGGAATGTATG+TGG | + | chr8_3:50745839-50745858 | None:intergenic | 45.0% | |
| ! | TGTTACCTGTGTTGGTATGG+TGG | - | chr8_3:50745872-50745891 | Msa1293550:intron | 45.0% |
| ATCTTCCACCATACCAACAC+AGG | + | chr8_3:50745880-50745899 | None:intergenic | 45.0% | |
| CAATCGGGGTAACAGTTAAG+GGG | + | chr8_3:50746112-50746131 | None:intergenic | 45.0% | |
| GACAATCGGGGTAACAGTTA+AGG | + | chr8_3:50746114-50746133 | None:intergenic | 45.0% | |
| ACCATTTCCTTCTCTCTCCT+TGG | - | chr8_3:50746157-50746176 | Msa1293550:intron | 45.0% | |
| CCATTTCCTTCTCTCTCCTT+GGG | - | chr8_3:50746158-50746177 | Msa1293550:intron | 45.0% | |
| !!! | TCTGCTTTGTTTTCTAGCCC+TGG | - | chr8_3:50746381-50746400 | Msa1293550:intron | 45.0% |
| !! | TTGCAACCTACCTTTTGGGT+AGG | + | chr8_3:50746534-50746553 | None:intergenic | 45.0% |
| ! | CCACTTGCAACCTACCTTTT+GGG | + | chr8_3:50746538-50746557 | None:intergenic | 45.0% |
| ! | ACCACTTGCAACCTACCTTT+TGG | + | chr8_3:50746539-50746558 | None:intergenic | 45.0% |
| ! | TGAGAAGGAATTGATGGCTC+TGG | + | chr8_3:50746574-50746593 | None:intergenic | 45.0% |
| !! | TATTTCAGCAAGGCGTTGTC+AGG | + | chr8_3:50746621-50746640 | None:intergenic | 45.0% |
| ! | GATGCTTCGAGAAGAGGTAT+GGG | + | chr8_3:50746678-50746697 | None:intergenic | 45.0% |
| TGATGCTTCGAGAAGAGGTA+TGG | + | chr8_3:50746679-50746698 | None:intergenic | 45.0% | |
| TGATGTGATGCTTCGAGAAG+AGG | + | chr8_3:50746684-50746703 | None:intergenic | 45.0% | |
| ! | AAATCCGGAAGCGTAAGTTC+AGG | - | chr8_3:50746723-50746742 | Msa1293550:intron | 45.0% |
| ! | AATCCGGAAGCGTAAGTTCA+GGG | - | chr8_3:50746724-50746743 | Msa1293550:intron | 45.0% |
| CTCCCATTGAAAGCCTTCAA+TGG | - | chr8_3:50746794-50746813 | Msa1293550:intron | 45.0% | |
| !!! | AGGGGATTTTTAGGGTTGAC+TGG | + | chr8_3:50746863-50746882 | None:intergenic | 45.0% |
| ! | AGGGAGTGAGGGGATTTTTA+GGG | + | chr8_3:50746871-50746890 | None:intergenic | 45.0% |
| ! | AAGGGAGTGAGGGGATTTTT+AGG | + | chr8_3:50746872-50746891 | None:intergenic | 45.0% |
| CACAATAACAAGGGAGTGAG+GGG | + | chr8_3:50746881-50746900 | None:intergenic | 45.0% | |
| CCACAATAACAAGGGAGTGA+GGG | + | chr8_3:50746882-50746901 | None:intergenic | 45.0% | |
| GCATGGAGCCACAATAACAA+GGG | + | chr8_3:50746890-50746909 | None:intergenic | 45.0% | |
| TGCATGGAGCCACAATAACA+AGG | + | chr8_3:50746891-50746910 | None:intergenic | 45.0% | |
| TATCGGACCTTTGTGGTGAT+GGG | - | chr8_3:50747098-50747117 | Msa1293550:intron | 45.0% | |
| CTGTCAGTGTCCACTTCAAT+GGG | + | chr8_3:50747128-50747147 | None:intergenic | 45.0% | |
| ! | CAGAATTGAGTTGCAAGAGG+GGG | + | chr8_3:50747157-50747176 | None:intergenic | 45.0% |
| GAAAGGGTTACAGCCACAAA+GGG | + | chr8_3:50747190-50747209 | None:intergenic | 45.0% | |
| TGAAAGGGTTACAGCCACAA+AGG | + | chr8_3:50747191-50747210 | None:intergenic | 45.0% | |
| CTGTTGGGAACAGTATGAAG+GGG | + | chr8_3:50747226-50747245 | None:intergenic | 45.0% | |
| GCTGTTGGGAACAGTATGAA+GGG | + | chr8_3:50747227-50747246 | None:intergenic | 45.0% | |
| TGCTGTTGGGAACAGTATGA+AGG | + | chr8_3:50747228-50747247 | None:intergenic | 45.0% | |
| GAGGAACTTCAACTGCTGTT+GGG | + | chr8_3:50747241-50747260 | None:intergenic | 45.0% | |
| AGAGGAACTTCAACTGCTGT+TGG | + | chr8_3:50747242-50747261 | None:intergenic | 45.0% | |
| GCAGTTGAAGTTCCTCTTGA+TGG | - | chr8_3:50747245-50747264 | Msa1293550:intron | 45.0% | |
| ATTGAACAGGGTCCATCAAG+AGG | + | chr8_3:50747260-50747279 | None:intergenic | 45.0% | |
| AGAAGAGCCAGGATTGAACA+GGG | + | chr8_3:50747272-50747291 | None:intergenic | 45.0% | |
| AAGAAGAGCCAGGATTGAAC+AGG | + | chr8_3:50747273-50747292 | None:intergenic | 45.0% | |
| AAGAAGACAGAAGAAGAGCC+AGG | + | chr8_3:50747283-50747302 | None:intergenic | 45.0% | |
| GAATAGACTCTCCATGTGAC+AGG | - | chr8_3:50747650-50747669 | Msa1293550:intron | 45.0% | |
| ! | TAGAGAACCTGCTGTTTGTG+TGG | + | chr8_3:50747719-50747738 | None:intergenic | 45.0% |
| CTAGAAACATGGAATGAGCG+TGG | + | chr8_3:50748006-50748025 | None:intergenic | 45.0% | |
| ATGCTCTCCAGATTCTCGAA+TGG | + | chr8_3:50748163-50748182 | None:intergenic | 45.0% | |
| !! | GCCTGTCACTTGTTTTTCAC+TGG | + | chr8_3:50748278-50748297 | None:intergenic | 45.0% |
| AATAAGTGGGCGACCAAACT+TGG | - | chr8_3:50748315-50748334 | Msa1293550:intron | 45.0% | |
| AGAAGAATCTCAGAGGACCA+GGG | + | chr8_3:50748528-50748547 | None:intergenic | 45.0% | |
| CAAGACAGTAATAACCTCCC+AGG | - | chr8_3:50748634-50748653 | Msa1293550:intron | 45.0% | |
| ATCCTCTTTGGTTGCAACGT+TGG | + | chr8_3:50748729-50748748 | None:intergenic | 45.0% | |
| TCCCGTGTCAATATCCTCTT+TGG | + | chr8_3:50748741-50748760 | None:intergenic | 45.0% | |
| GTTGGGTACTAACCATCCAA+TGG | - | chr8_3:50748766-50748785 | Msa1293550:intron | 45.0% | |
| ! | AAAGTTCTTCATGCTGGCCT+TGG | - | chr8_3:50748842-50748861 | Msa1293550:intron | 45.0% |
| !! | AAGTTCTTCATGCTGGCCTT+GGG | - | chr8_3:50748843-50748862 | Msa1293550:intron | 45.0% |
| TACTGTACAAGTAGAGGGCA+AGG | + | chr8_3:50748884-50748903 | None:intergenic | 45.0% | |
| TATGTTGATGCTGGCAGACT+TGG | - | chr8_3:50748902-50748921 | Msa1293550:intron | 45.0% | |
| CCCAAAGTTCAGTACAAGTG+TGG | + | chr8_3:50749037-50749056 | None:intergenic | 45.0% | |
| GTGAAGATGATCGGCGTGAT+AGG | - | chr8_3:50744629-50744648 | Msa1293550:three_prime_UTR | 50.0% | |
| AAGATGATCGGCGTGATAGG+CGG | - | chr8_3:50744632-50744651 | Msa1293550:three_prime_UTR | 50.0% | |
| TTCTACCACAAGGCCTCAAC+AGG | - | chr8_3:50745006-50745025 | Msa1293550:CDS | 50.0% | |
| !! | TGGGACCCACATGATTTGGT+GGG | + | chr8_3:50745346-50745365 | None:intergenic | 50.0% |
| ! | ATGGGACCCACATGATTTGG+TGG | + | chr8_3:50745347-50745366 | None:intergenic | 50.0% |
| GCAGTTTGGGAAAGAAGAGG+AGG | + | chr8_3:50746081-50746100 | None:intergenic | 50.0% | |
| ACACGACTCAACGACAATCG+GGG | + | chr8_3:50746126-50746145 | None:intergenic | 50.0% | |
| CACACGACTCAACGACAATC+GGG | + | chr8_3:50746127-50746146 | None:intergenic | 50.0% | |
| CCACACGACTCAACGACAAT+CGG | + | chr8_3:50746128-50746147 | None:intergenic | 50.0% | |
| CCCAAGGAGAGAGAAGGAAA+TGG | + | chr8_3:50746161-50746180 | None:intergenic | 50.0% | |
| AGTGAACCCAAGGAGAGAGA+AGG | + | chr8_3:50746167-50746186 | None:intergenic | 50.0% | |
| ! | AGAGCACCTGTTGATGCTGT+GGG | + | chr8_3:50746258-50746277 | None:intergenic | 50.0% |
| ! | TAGAGCACCTGTTGATGCTG+TGG | + | chr8_3:50746259-50746278 | None:intergenic | 50.0% |
| AGAAGGCAGTTTCTGCAGAG+GGG | + | chr8_3:50746289-50746308 | None:intergenic | 50.0% | |
| GAGAAGGCAGTTTCTGCAGA+GGG | + | chr8_3:50746290-50746309 | None:intergenic | 50.0% | |
| CAGAAACTGCCTTCTCCTCA+AGG | - | chr8_3:50746294-50746313 | Msa1293550:intron | 50.0% | |
| TGCCTTCTCCTCAAGGCTAA+GGG | - | chr8_3:50746301-50746320 | Msa1293550:intron | 50.0% | |
| !! | TTCCCTTAGCCTTGAGGAGA+AGG | + | chr8_3:50746306-50746325 | None:intergenic | 50.0% |
| !! | GTTTGCTTCCCTTAGCCTTG+AGG | + | chr8_3:50746312-50746331 | None:intergenic | 50.0% |
| CCCAAAAGGTAGGTTGCAAG+TGG | - | chr8_3:50746535-50746554 | Msa1293550:intron | 50.0% | |
| !! | ATTGATGGCTCTGGTGATGG+CGG | + | chr8_3:50746565-50746584 | None:intergenic | 50.0% |
| !! | GGAATTGATGGCTCTGGTGA+TGG | + | chr8_3:50746568-50746587 | None:intergenic | 50.0% |
| ! | ATCCGGAAGCGTAAGTTCAG+GGG | - | chr8_3:50746725-50746744 | Msa1293550:intron | 50.0% |
| ATCCCCTGAACTTACGCTTC+CGG | + | chr8_3:50746730-50746749 | None:intergenic | 50.0% | |
| !! | CCCTCACTCCCTTGTTATTG+TGG | - | chr8_3:50746879-50746898 | Msa1293550:intron | 50.0% |
| GCCACAATAACAAGGGAGTG+AGG | + | chr8_3:50746883-50746902 | None:intergenic | 50.0% | |
| AGGTCCTCCACTACTGGAAT+GGG | - | chr8_3:50746919-50746938 | Msa1293550:intron | 50.0% | |
| ATACCCCATTCCAGTAGTGG+AGG | + | chr8_3:50746926-50746945 | None:intergenic | 50.0% | |
| CTATCGGACCTTTGTGGTGA+TGG | - | chr8_3:50747097-50747116 | Msa1293550:intron | 50.0% | |
| ! | ATCGGACCTTTGTGGTGATG+GGG | - | chr8_3:50747099-50747118 | Msa1293550:intron | 50.0% |
| CCTGTCAGTGTCCACTTCAA+TGG | + | chr8_3:50747129-50747148 | None:intergenic | 50.0% | |
| CCATTGAAGTGGACACTGAC+AGG | - | chr8_3:50747126-50747145 | Msa1293550:intron | 50.0% | |
| CTGTGAACAGAGTCCCTTTG+TGG | - | chr8_3:50747174-50747193 | Msa1293550:intron | 50.0% | |
| ! | TGATGGACCCTGTTCAATCC+TGG | - | chr8_3:50747262-50747281 | Msa1293550:intron | 50.0% |
| ATAGCCTGTTGGGGGATGTA+GGG | + | chr8_3:50747310-50747329 | None:intergenic | 50.0% | |
| TCAATCACCTCTCCCTTCCA+AGG | - | chr8_3:50747395-50747414 | Msa1293550:intron | 50.0% | |
| ! | GAGTTTTCCTTGGAAGGGAG+AGG | + | chr8_3:50747405-50747424 | None:intergenic | 50.0% |
| TAAGGGTTGCCTCTCCCAAA+TGG | - | chr8_3:50748184-50748203 | Msa1293550:intron | 50.0% | |
| CAGAAGAATCTCAGAGGACC+AGG | + | chr8_3:50748529-50748548 | None:intergenic | 50.0% | |
| GAAGCCTGAATAATCCTGGG+AGG | + | chr8_3:50748651-50748670 | None:intergenic | 50.0% | |
| CACCAACGTTGCAACCAAAG+AGG | - | chr8_3:50748724-50748743 | Msa1293550:intron | 50.0% | |
| GCTTGCAGACTTCATTGGGT+TGG | - | chr8_3:50748799-50748818 | Msa1293550:CDS | 50.0% | |
| !! | AGTTCTTCATGCTGGCCTTG+GGG | - | chr8_3:50748844-50748863 | Msa1293550:intron | 50.0% |
| GGCAGACTTGGAAGAAAACG+AGG | - | chr8_3:50748914-50748933 | Msa1293550:CDS | 50.0% | |
| GCCATGCATGGCTGTCAGTT+GGG | + | chr8_3:50744681-50744700 | None:intergenic | 55.0% | |
| TGCCATGCATGGCTGTCAGT+TGG | + | chr8_3:50744682-50744701 | None:intergenic | 55.0% | |
| AGGAACCTGTTGAGGCCTTG+TGG | + | chr8_3:50745014-50745033 | None:intergenic | 55.0% | |
| CCGATTGTCGTTGAGTCGTG+TGG | - | chr8_3:50746125-50746144 | Msa1293550:intron | 55.0% | |
| ACCTTCCCCACAGCATCAAC+AGG | - | chr8_3:50746249-50746268 | Msa1293550:intron | 55.0% | |
| ACCTGTTGATGCTGTGGGGA+AGG | + | chr8_3:50746253-50746272 | None:intergenic | 55.0% | |
| GAGCACCTGTTGATGCTGTG+GGG | + | chr8_3:50746257-50746276 | None:intergenic | 55.0% | |
| GAAGGCAGTTTCTGCAGAGG+GGG | + | chr8_3:50746288-50746307 | None:intergenic | 55.0% | |
| GGAGAAGGCAGTTTCTGCAG+AGG | + | chr8_3:50746291-50746310 | None:intergenic | 55.0% | |
| CTGCCTTCTCCTCAAGGCTA+AGG | - | chr8_3:50746300-50746319 | Msa1293550:intron | 55.0% | |
| TGGCTCCATGCAAATCCGAG+AGG | - | chr8_3:50746899-50746918 | Msa1293550:intron | 55.0% | |
| GAGGACCTCTCGGATTTGCA+TGG | + | chr8_3:50746907-50746926 | None:intergenic | 55.0% | |
| ! | TCCAGTAGTGGAGGACCTCT+CGG | + | chr8_3:50746917-50746936 | None:intergenic | 55.0% |
| GAGGTCCTCCACTACTGGAA+TGG | - | chr8_3:50746918-50746937 | Msa1293550:intron | 55.0% | |
| GGTCCTCCACTACTGGAATG+GGG | - | chr8_3:50746920-50746939 | Msa1293550:intron | 55.0% | |
| !! | TCGGACCTTTGTGGTGATGG+GGG | - | chr8_3:50747100-50747119 | Msa1293550:intron | 55.0% |
| !! | GATGGGGGTACCCATTGAAG+TGG | - | chr8_3:50747115-50747134 | Msa1293550:intron | 55.0% |
| ! | ATTGAGTTGCAAGAGGGGGC+AGG | + | chr8_3:50747153-50747172 | None:intergenic | 55.0% |
| TGATCCCTACATCCCCCAAC+AGG | - | chr8_3:50747303-50747322 | Msa1293550:intron | 55.0% | |
| CATAGCCTGTTGGGGGATGT+AGG | + | chr8_3:50747311-50747330 | None:intergenic | 55.0% | |
| GTGGGGCAGGTTGTGAATGT+GGG | + | chr8_3:50747692-50747711 | None:intergenic | 55.0% | |
| ! | TGCTGTTTGTGTGGCCTGGT+GGG | + | chr8_3:50747710-50747729 | None:intergenic | 55.0% |
| ! | AACCTGCTGTTTGTGTGGCC+TGG | + | chr8_3:50747714-50747733 | None:intergenic | 55.0% |
| !! | GCTCTAAAGGGCCCATTGGA+TGG | + | chr8_3:50748781-50748800 | None:intergenic | 55.0% |
| !! | GCAAGCTCTAAAGGGCCCAT+TGG | + | chr8_3:50748785-50748804 | None:intergenic | 55.0% |
| ATGATCGGCGTGATAGGCGG+TGG | - | chr8_3:50744635-50744654 | Msa1293550:three_prime_UTR | 60.0% | |
| TGATCGGCGTGATAGGCGGT+GGG | - | chr8_3:50744636-50744655 | Msa1293550:three_prime_UTR | 60.0% | |
| GTGATAGGCGGTGGGCAGAT+GGG | - | chr8_3:50744644-50744663 | Msa1293550:three_prime_UTR | 60.0% | |
| GCCCAACTGACAGCCATGCA+TGG | - | chr8_3:50744677-50744696 | Msa1293550:three_prime_UTR | 60.0% | |
| GCAGACGTCGATGCCATGCA+TGG | + | chr8_3:50744693-50744712 | None:intergenic | 60.0% | |
| GTGGGGAAGGTCGTGAGCAT+GGG | + | chr8_3:50746240-50746259 | None:intergenic | 60.0% | |
| TGTGGGGAAGGTCGTGAGCA+TGG | + | chr8_3:50746241-50746260 | None:intergenic | 60.0% | |
| TCCGAGAGGTCCTCCACTAC+TGG | - | chr8_3:50746913-50746932 | Msa1293550:intron | 60.0% | |
| GGGTACCCCCATCACCACAA+AGG | + | chr8_3:50747108-50747127 | None:intergenic | 60.0% | |
| AAGTGGGGCTCAGGAGAGAG+AGG | + | chr8_3:50747619-50747638 | None:intergenic | 60.0% | |
| GGACGAAGAAAGTGGGGCTC+AGG | + | chr8_3:50747628-50747647 | None:intergenic | 60.0% | |
| GGTGGGGCAGGTTGTGAATG+TGG | + | chr8_3:50747693-50747712 | None:intergenic | 60.0% | |
| CATTCACAACCTGCCCCACC+AGG | - | chr8_3:50747693-50747712 | Msa1293550:intron | 60.0% | |
| GCTGTTTGTGTGGCCTGGTG+GGG | + | chr8_3:50747709-50747728 | None:intergenic | 60.0% | |
| ! | CTGCTGTTTGTGTGGCCTGG+TGG | + | chr8_3:50747711-50747730 | None:intergenic | 60.0% |
| CACCAGGCCACACAAACAGC+AGG | - | chr8_3:50747709-50747728 | Msa1293550:intron | 60.0% | |
| CGTGATAGGCGGTGGGCAGA+TGG | - | chr8_3:50744643-50744662 | Msa1293550:three_prime_UTR | 65.0% | |
| TTTGTGTGGCCTGGTGGGGC+AGG | + | chr8_3:50747705-50747724 | None:intergenic | 65.0% | |
| GGCGGTGGGCAGATGGGATC+AGG | - | chr8_3:50744650-50744669 | Msa1293550:three_prime_UTR | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 50744620 | 50749124 | 50744620 | ID=Msa1293550;Name=Msa1293550 |
| chr8_3 | mRNA | 50744620 | 50749124 | 50744620 | ID=Msa1293550-mRNA-1;Parent=Msa1293550;Name=Msa1293550-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0.33|0.25|1|0.33|0.25|4|127|260 |
| chr8_3 | exon | 50744620 | 50745116 | 50744620 | ID=Msa1293550-mRNA-1:exon:14141;Parent=Msa1293550-mRNA-1 |
| chr8_3 | exon | 50748031 | 50748136 | 50748031 | ID=Msa1293550-mRNA-1:exon:14140;Parent=Msa1293550-mRNA-1 |
| chr8_3 | exon | 50748767 | 50748856 | 50748767 | ID=Msa1293550-mRNA-1:exon:14139;Parent=Msa1293550-mRNA-1 |
| chr8_3 | exon | 50748908 | 50749124 | 50748908 | ID=Msa1293550-mRNA-1:exon:14138;Parent=Msa1293550-mRNA-1 |
| chr8_3 | CDS | 50748908 | 50749124 | 50748908 | ID=Msa1293550-mRNA-1:cds;Parent=Msa1293550-mRNA-1 |
| chr8_3 | CDS | 50748767 | 50748856 | 50748767 | ID=Msa1293550-mRNA-1:cds;Parent=Msa1293550-mRNA-1 |
| chr8_3 | CDS | 50748031 | 50748136 | 50748031 | ID=Msa1293550-mRNA-1:cds;Parent=Msa1293550-mRNA-1 |
| chr8_3 | CDS | 50744747 | 50745116 | 50744747 | ID=Msa1293550-mRNA-1:cds;Parent=Msa1293550-mRNA-1 |
| chr8_3 | three_prime_UTR | 50744620 | 50744746 | 50744620 | ID=Msa1293550-mRNA-1:three_prime_utr;Parent=Msa1293550-mRNA-1 |
| Gene Sequence |
| Protein sequence |
