AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1295940

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1295940 MtrunA17_Chr8g0373531 98.204 501 9 0 1 501 1 501 0.0 996
Msa1295940 MtrunA17_Chr5g0432581 82.800 500 85 1 1 499 1 500 0.0 861
Msa1295940 MtrunA17_Chr4g0034681 60.494 486 188 3 16 499 27 510 0.0 595
Msa1295940 MtrunA17_Chr3g0144361 60.334 479 187 3 7 484 17 493 0.0 582
Msa1295940 MtrunA17_Chr4g0036021 59.743 467 185 2 16 482 24 487 0.0 570
Msa1295940 MtrunA17_Chr5g0403831 55.717 481 210 2 11 489 23 502 0.0 536
Msa1295940 MtrunA17_Chr6g0485661 52.463 467 211 2 8 474 47 502 8.01e-169 486
Msa1295940 MtrunA17_Chr8g0390521 51.139 483 226 4 2 484 1 473 7.12e-163 471
Msa1295940 MtrunA17_Chr2g0282031 47.862 491 240 5 11 501 45 519 2.47e-155 452
Msa1295940 MtrunA17_Chr4g0021771 45.110 501 257 6 2 501 38 521 6.72e-153 446
Msa1295940 MtrunA17_Chr1g0213611 32.724 492 299 7 9 490 67 536 2.03e-73 242
Msa1295940 MtrunA17_Chr7g0214451 32.245 490 303 9 8 490 20 487 2.79e-71 235
Msa1295940 MtrunA17_Chr1g0213631 33.843 458 273 9 38 488 4 438 2.15e-67 223
Msa1295940 MtrunA17_Chr4g0039651 30.675 489 310 7 5 479 24 497 2.02e-62 211
Msa1295940 MtrunA17_Chr3g0115781 31.287 505 289 13 12 485 15 492 8.17e-61 207
Msa1295940 MtrunA17_Chr6g0457781 32.409 469 277 10 25 486 111 546 6.86e-58 201
Msa1295940 MtrunA17_Chr5g0420841 33.710 442 263 9 65 499 88 506 1.37e-57 199
Msa1295940 MtrunA17_Chr4g0032021 30.658 486 310 9 7 479 80 551 2.81e-57 199
Msa1295940 MtrunA17_Chr3g0115721 31.568 491 279 14 24 485 28 490 1.08e-56 196
Msa1295940 MtrunA17_Chr3g0115741 30.143 491 286 12 24 485 31 493 5.82e-56 194
Msa1295940 MtrunA17_Chr7g0250881 31.489 470 280 10 25 486 71 506 1.80e-55 193
Msa1295940 MtrunA17_Chr5g0417611 29.862 509 308 12 3 485 8 493 3.05e-54 190
Msa1295940 MtrunA17_Chr3g0085971 31.678 423 264 7 67 485 90 491 7.64e-54 189
Msa1295940 MtrunA17_Chr1g0155221 27.837 467 303 8 21 482 51 488 2.49e-53 187
Msa1295940 MtrunA17_Chr3g0078971 29.675 492 299 12 24 491 28 496 4.40e-53 187
Msa1295940 MtrunA17_Chr8g0373181 28.726 463 295 7 22 479 50 482 4.97e-53 186
Msa1295940 MtrunA17_Chr3g0128081 28.820 517 322 11 5 496 8 503 8.21e-53 186
Msa1295940 MtrunA17_Chr4g0048051 30.171 527 310 14 3 495 8 510 3.48e-52 184
Msa1295940 MtrunA17_Chr3g0078991 29.666 509 313 10 7 489 11 500 6.03e-52 184
Msa1295940 MtrunA17_Chr8g0390141 29.259 499 308 12 18 494 26 501 1.09e-51 183
Msa1295940 MtrunA17_Chr5g0394341 30.353 425 267 7 59 478 83 483 1.27e-51 183
Msa1295940 MtrunA17_Chr3g0115751 32.176 432 253 10 65 485 93 495 3.72e-51 182
Msa1295940 MtrunA17_Chr3g0128171 29.909 438 281 8 65 497 42 458 1.72e-50 179
Msa1295940 MtrunA17_Chr2g0303731 35.143 350 207 6 16 361 23 356 6.33e-50 180
Msa1295940 MtrunA17_Chr2g0303731 33.962 106 70 0 381 486 452 557 1.37e-13 73.2
Msa1295940 MtrunA17_Chr4g0048411 29.622 503 308 10 7 485 12 492 8.91e-50 178
Msa1295940 MtrunA17_Chr3g0115711 29.209 493 287 12 24 485 28 489 1.19e-49 177
Msa1295940 MtrunA17_Chr4g0065311 28.800 500 311 12 8 485 9 485 3.73e-49 176
Msa1295940 MtrunA17_Chr4g0066581 30.531 452 273 13 34 479 67 483 1.08e-48 174
Msa1295940 MtrunA17_Chr2g0303701 36.158 354 203 7 16 365 23 357 1.90e-48 176
Msa1295940 MtrunA17_Chr3g0078791 30.516 426 251 9 65 486 34 418 2.92e-48 172
Msa1295940 MtrunA17_Chr8g0390261 28.659 492 302 11 18 485 26 492 3.16e-48 174
Msa1295940 MtrunA17_Chr1g0164851 30.444 496 284 13 18 482 22 487 6.62e-48 173
Msa1295940 MtrunA17_Chr1g0164871 30.346 491 291 12 18 482 22 487 9.29e-48 172
Msa1295940 MtrunA17_Chr4g0065324 27.976 504 317 11 4 485 14 493 1.56e-47 172
Msa1295940 MtrunA17_Chr7g0273281 27.521 476 300 8 15 489 71 502 2.89e-47 171
Msa1295940 MtrunA17_Chr1g0205691 29.778 450 281 8 59 500 83 505 4.36e-47 171
Msa1295940 MtrunA17_Chr6g0486681 28.671 429 282 7 65 491 92 498 7.11e-47 170
Msa1295940 MtrunA17_Chr6g0486671 28.671 429 282 7 65 491 92 498 7.11e-47 170
Msa1295940 MtrunA17_Chr1g0205671 29.106 481 292 11 23 478 27 483 9.76e-47 169
Msa1295940 MtrunA17_Chr7g0259471 29.167 480 304 11 3 479 24 470 5.87e-46 167
Msa1295940 MtrunA17_Chr2g0286721 30.023 443 261 12 47 479 77 480 6.17e-46 167
Msa1295940 MtrunA17_Chr3g0119401 28.390 472 306 9 19 486 93 536 9.46e-46 167
Msa1295940 MtrunA17_Chr1g0205681 30.465 430 269 9 55 478 79 484 3.24e-45 165
Msa1295940 MtrunA17_Chr8g0376631 33.333 336 204 6 16 347 23 342 8.88e-44 162
Msa1295940 MtrunA17_Chr8g0376631 35.849 106 68 0 381 486 451 556 7.69e-15 77.0
Msa1295940 MtrunA17_Chr8g0373191 26.695 472 291 10 18 484 38 459 1.08e-43 160
Msa1295940 MtrunA17_Chr8g0376601 35.043 351 206 7 16 361 23 356 1.37e-43 162
Msa1295940 MtrunA17_Chr8g0376601 36.957 92 58 0 381 472 450 541 3.51e-11 65.5
Msa1295940 MtrunA17_Chr2g0290181 31.383 376 232 8 7 371 10 370 1.43e-43 162
Msa1295940 MtrunA17_Chr2g0290181 38.095 105 65 0 380 484 454 558 5.40e-16 80.9
Msa1295940 MtrunA17_Chr3g0121674 32.177 317 185 7 181 490 1 294 2.98e-43 155
Msa1295940 MtrunA17_Chr7g0259221 29.668 482 299 13 6 479 23 472 1.12e-42 158
Msa1295940 MtrunA17_Chr5g0445601 28.980 490 302 12 18 485 26 491 1.18e-42 158
Msa1295940 MtrunA17_Chr7g0257631 27.984 511 324 11 2 491 44 531 1.22e-42 159
Msa1295940 MtrunA17_Chr5g0437021 27.600 500 293 15 18 482 22 487 1.48e-41 155
Msa1295940 MtrunA17_Chr3g0115731 29.317 498 260 18 24 485 28 469 4.60e-40 151
Msa1295940 MtrunA17_Chr4g0004821 28.747 487 301 13 7 480 17 470 1.02e-38 147
Msa1295940 MtrunA17_Chr6g0486021 28.776 490 301 14 1 480 33 484 1.23e-38 147
Msa1295940 MtrunA17_Chr8g0376611 34.507 284 167 5 69 350 12 278 7.39e-38 145
Msa1295940 MtrunA17_Chr8g0376611 33.019 106 71 0 381 486 382 487 1.30e-13 73.2
Msa1295940 MtrunA17_Chr3g0144261 35.784 204 128 2 17 219 2 203 1.49e-32 132
Msa1295940 MtrunA17_Chr3g0144261 30.315 254 149 8 254 490 487 729 2.36e-21 97.8
Msa1295940 MtrunA17_Chr4g0065351 29.830 352 220 9 143 491 7 334 6.94e-31 122
Msa1295940 MtrunA17_Chr2g0290161 29.352 293 163 7 77 366 21 272 1.53e-29 121
Msa1295940 MtrunA17_Chr2g0290161 36.190 105 67 0 380 484 361 465 5.06e-12 68.2
Msa1295940 MtrunA17_Chr5g0407441 30.672 238 155 5 23 254 8 241 1.47e-25 110
Msa1295940 MtrunA17_Chr5g0407441 27.935 247 145 7 247 476 473 703 8.03e-16 80.5
Msa1295940 MtrunA17_Chr8g0370141 30.392 204 135 4 23 222 8 208 1.60e-25 108
Msa1295940 MtrunA17_Chr3g0146061 31.140 228 147 5 30 251 15 238 1.76e-24 107
Msa1295940 MtrunA17_Chr3g0146061 26.339 224 145 5 264 476 507 721 3.43e-17 84.7
Msa1295940 MtrunA17_Chr5g0419321 29.358 218 148 4 41 254 54 269 1.55e-23 104
Msa1295940 MtrunA17_Chr5g0419321 30.303 231 127 5 264 476 515 729 6.74e-18 87.0
Msa1295940 MtrunA17_Chr5g0404191 28.704 216 146 1 22 237 53 260 1.78e-23 100
Msa1295940 MtrunA17_Chr7g0273261 30.667 225 146 4 279 501 42 258 3.09e-23 99.0
Msa1295940 MtrunA17_Chr5g0434231 32.240 183 91 4 51 232 2 152 3.73e-21 90.1
Msa1295940 MtrunA17_Chr7g0273271 29.648 199 132 1 8 206 16 206 4.13e-18 83.2
Msa1295940 MtrunA17_Chr8g0370151 25.225 222 150 3 264 476 128 342 3.03e-15 77.4
Msa1295940 MtrunA17_Chr3g0115771 25.513 341 180 12 129 465 7 277 5.38e-15 75.5
Msa1295940 MtrunA17_Chr5g0434251 33.019 106 71 0 381 486 38 143 6.93e-15 72.4
Msa1295940 MtrunA17_Chr5g0446681 30.968 155 91 2 5 159 8 146 7.72e-13 69.3
Msa1295940 MtrunA17_Chr4g0000061 22.030 463 298 14 47 477 57 488 1.74e-12 69.7
Msa1295940 MtrunA17_Chr5g0404181 33.010 103 68 1 380 482 30 131 1.51e-11 62.0
Msa1295940 MtrunA17_Chr5g0434261 36.000 100 61 1 374 473 208 304 4.17e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1295940 AT4G36670.1 67.500 480 152 2 16 492 14 492 0.0 670
Msa1295940 AT2G18480.1 70.675 474 137 2 9 482 12 483 0.0 657
Msa1295940 AT3G18830.1 58.974 468 191 1 16 483 33 499 0.0 589
Msa1295940 AT2G16120.1 56.098 492 213 3 7 496 14 504 0.0 564
Msa1295940 AT2G16130.1 56.289 485 210 2 7 490 14 497 0.0 564
Msa1295940 AT2G20780.1 45.090 499 254 5 4 501 40 519 3.61e-151 442
Msa1295940 AT2G20780.2 44.880 459 233 5 44 501 22 461 7.76e-136 401
Msa1295940 AT2G43330.1 31.447 477 306 5 16 489 28 486 2.07e-65 220
Msa1295940 AT1G75220.1 30.472 466 291 6 21 482 50 486 1.64e-59 204
Msa1295940 AT5G16150.2 32.759 464 278 8 25 484 111 544 5.10e-58 201
Msa1295940 AT5G16150.1 32.759 464 278 8 25 484 111 544 5.10e-58 201
Msa1295940 AT5G16150.3 32.759 464 278 8 25 484 111 544 5.10e-58 201
Msa1295940 AT5G17010.1 33.735 415 252 6 69 479 104 499 9.17e-58 199
Msa1295940 AT5G17010.3 33.735 415 252 6 69 479 104 499 9.17e-58 199
Msa1295940 AT5G17010.4 33.735 415 252 6 69 479 104 499 9.17e-58 199
Msa1295940 AT5G26250.1 30.661 499 304 10 1 479 4 480 1.23e-57 199
Msa1295940 AT1G11260.1 30.470 489 290 13 20 482 25 489 2.75e-56 196
Msa1295940 AT5G27350.1 29.150 494 308 9 2 490 16 472 7.80e-56 194
Msa1295940 AT3G03090.1 31.938 454 285 9 34 479 62 499 2.04e-55 193
Msa1295940 AT3G05160.1 29.098 488 304 9 1 483 5 455 2.23e-55 192
Msa1295940 AT5G27360.1 28.858 499 303 10 2 490 20 476 1.38e-54 191
Msa1295940 AT1G50310.1 28.980 490 294 13 24 485 30 493 1.76e-54 191
Msa1295940 AT1G19450.1 29.424 469 294 7 20 482 50 487 1.91e-54 190
Msa1295940 AT5G59250.1 30.043 466 301 7 24 479 103 553 3.91e-54 191
Msa1295940 AT5G27360.3 28.858 499 303 10 2 490 68 524 5.14e-54 190
Msa1295940 AT3G19930.1 30.841 428 258 9 65 482 88 487 9.88e-54 189
Msa1295940 AT3G19930.2 30.841 428 258 9 65 482 88 487 9.88e-54 189
Msa1295940 AT3G05960.1 30.722 485 288 12 18 479 20 479 1.83e-53 188
Msa1295940 AT3G05165.3 28.884 502 293 11 1 486 14 467 1.92e-52 184
Msa1295940 AT3G05165.2 28.884 502 293 11 1 486 14 467 1.92e-52 184
Msa1295940 AT3G05165.1 28.884 502 293 11 1 486 14 467 1.92e-52 184
Msa1295940 AT3G19940.1 29.652 489 291 11 24 485 30 492 7.69e-52 184
Msa1295940 AT5G23270.1 29.672 519 298 14 2 485 7 493 3.43e-51 182
Msa1295940 AT4G02050.2 29.109 505 312 11 9 491 17 497 4.82e-51 182
Msa1295940 AT4G02050.1 29.109 505 312 11 9 491 17 497 4.82e-51 182
Msa1295940 AT4G21480.1 29.084 502 308 11 6 482 9 487 8.46e-51 181
Msa1295940 AT5G26340.1 30.247 486 294 11 24 485 28 492 9.02e-51 181
Msa1295940 AT3G05150.2 30.867 473 280 14 25 485 37 474 1.69e-50 179
Msa1295940 AT1G30220.1 36.932 352 198 7 16 361 25 358 4.09e-50 181
Msa1295940 AT1G30220.1 37.755 98 61 0 389 486 463 560 4.51e-15 78.2
Msa1295940 AT5G18840.1 28.807 486 309 11 7 486 28 482 7.86e-50 178
Msa1295940 AT3G05150.1 30.968 465 276 13 25 479 37 466 1.08e-49 177
Msa1295940 AT3G05150.3 30.968 465 276 13 25 479 37 466 1.08e-49 177
Msa1295940 AT3G05160.3 29.587 436 275 7 49 483 2 406 1.59e-49 175
Msa1295940 AT3G05160.2 29.587 436 275 7 49 483 2 406 1.59e-49 175
Msa1295940 AT1G77210.2 29.783 507 299 14 18 496 26 503 6.91e-49 176
Msa1295940 AT1G77210.1 29.783 507 299 14 18 496 26 503 6.91e-49 176
Msa1295940 AT1G54730.2 29.140 477 300 9 7 479 20 462 2.78e-48 173
Msa1295940 AT5G61520.1 27.885 520 314 14 1 485 1 494 2.57e-47 172
Msa1295940 AT1G08900.1 27.879 495 297 13 7 486 13 462 1.69e-46 168
Msa1295940 AT1G08900.2 27.879 495 297 13 7 486 13 462 1.69e-46 168
Msa1295940 AT1G08930.1 28.211 475 307 11 7 479 46 488 2.33e-46 169
Msa1295940 AT1G08930.2 28.211 475 307 11 7 479 46 488 2.33e-46 169
Msa1295940 AT1G08900.5 28.791 455 264 13 47 486 11 420 3.38e-46 166
Msa1295940 AT1G08900.3 28.791 455 264 13 47 486 45 454 3.38e-46 167
Msa1295940 AT5G61520.2 29.343 426 270 8 65 485 47 446 3.72e-46 167
Msa1295940 AT1G07340.1 29.545 484 290 12 20 478 24 481 6.10e-45 165
Msa1295940 AT1G05030.1 29.854 479 291 13 19 487 79 522 8.43e-45 165
Msa1295940 AT1G34580.1 29.039 489 297 12 24 485 29 494 6.28e-44 162
Msa1295940 AT4G04750.1 27.778 450 279 10 47 487 64 476 6.42e-44 162
Msa1295940 AT4G04750.2 27.778 450 279 10 47 487 64 476 6.42e-44 162
Msa1295940 AT4G04750.3 27.778 450 279 10 47 487 108 520 9.22e-44 162
Msa1295940 AT1G34580.2 30.140 428 270 9 65 485 39 444 1.11e-43 160
Msa1295940 AT3G05165.6 27.800 500 286 11 1 484 14 454 3.14e-43 160
Msa1295940 AT2G35740.1 32.800 375 221 11 2 361 1 359 3.81e-43 161
Msa1295940 AT2G35740.1 37.374 99 62 0 381 479 458 556 1.05e-13 73.9
Msa1295940 AT4G16480.2 32.240 366 226 8 5 361 8 360 1.56e-42 160
Msa1295940 AT4G16480.2 37.374 99 62 0 381 479 459 557 1.99e-14 76.3
Msa1295940 AT4G16480.3 32.240 366 226 8 5 361 8 360 1.56e-42 160
Msa1295940 AT4G16480.3 37.374 99 62 0 381 479 459 557 1.99e-14 76.3
Msa1295940 AT4G16480.1 32.240 366 226 8 5 361 8 360 1.56e-42 160
Msa1295940 AT4G16480.1 37.374 99 62 0 381 479 459 557 1.99e-14 76.3
Msa1295940 AT1G67300.2 29.980 497 301 13 1 485 32 493 1.87e-42 158
Msa1295940 AT1G08890.1 28.294 463 286 12 25 479 33 457 2.59e-42 157
Msa1295940 AT5G27360.2 28.571 406 252 7 89 490 1 372 3.29e-42 154
Msa1295940 AT5G27360.5 28.571 406 252 7 89 490 1 372 3.29e-42 154
Msa1295940 AT1G67300.1 29.719 498 300 14 1 485 32 492 3.84e-42 157
Msa1295940 AT1G67300.3 29.719 498 300 14 1 485 32 492 3.84e-42 157
Msa1295940 AT3G05155.1 27.158 475 307 8 8 479 17 455 3.84e-42 156
Msa1295940 AT1G54730.3 29.032 434 271 8 7 436 20 420 6.06e-42 155
Msa1295940 AT2G48020.2 27.536 483 302 11 6 481 19 460 1.78e-41 154
Msa1295940 AT2G48020.1 27.536 483 302 11 6 481 19 460 1.78e-41 154
Msa1295940 AT3G05165.4 28.899 436 247 10 1 420 14 402 2.08e-41 154
Msa1295940 AT3G05165.5 28.899 436 247 10 1 420 14 402 2.08e-41 154
Msa1295940 AT1G54730.5 27.673 477 286 10 7 479 20 441 4.62e-41 153
Msa1295940 AT1G05030.2 29.194 459 280 13 39 487 47 470 1.03e-39 150
Msa1295940 AT5G27360.4 27.869 427 257 9 2 418 20 405 2.87e-39 148
Msa1295940 AT1G79820.2 29.814 483 296 13 6 480 41 488 3.03e-39 149
Msa1295940 AT1G79820.1 29.814 483 296 13 6 480 41 488 3.03e-39 149
Msa1295940 AT4G04760.1 25.684 475 299 9 18 485 43 470 3.39e-39 149
Msa1295940 AT1G50310.2 29.076 368 227 11 131 490 14 355 3.83e-39 146
Msa1295940 AT4G04760.3 25.901 444 288 7 49 485 2 411 3.89e-39 147
Msa1295940 AT1G67300.6 30.137 438 256 14 1 425 32 432 1.96e-37 143
Msa1295940 AT1G67300.7 30.137 438 256 14 1 425 32 432 1.96e-37 143
Msa1295940 AT1G67300.4 30.536 429 248 14 1 416 32 423 2.88e-37 142
Msa1295940 AT1G67300.5 30.536 429 248 14 1 416 32 423 2.88e-37 142
Msa1295940 AT1G77210.3 30.159 378 228 10 127 496 5 354 7.15e-37 139
Msa1295940 AT1G08900.4 27.376 442 266 11 8 436 14 413 7.82e-37 141
Msa1295940 AT1G54730.9 29.310 406 250 8 7 408 20 392 2.19e-36 139
Msa1295940 AT1G54730.7 29.310 406 250 8 7 408 20 392 2.19e-36 139
Msa1295940 AT3G05400.1 24.532 481 328 9 6 484 14 461 4.64e-36 139
Msa1295940 AT1G08920.1 25.466 483 322 9 8 484 17 467 3.55e-35 137
Msa1295940 AT1G54730.4 27.419 434 257 9 7 436 20 399 6.04e-35 135
Msa1295940 AT4G04760.2 24.895 478 296 10 18 485 43 467 6.15e-34 134
Msa1295940 AT1G08920.2 25.306 490 321 10 8 484 17 474 8.13e-34 134
Msa1295940 AT1G79820.4 29.882 425 261 11 6 425 41 433 1.66e-33 132
Msa1295940 AT5G17010.2 29.398 415 206 10 69 479 105 436 1.37e-32 129
Msa1295940 AT3G05400.2 24.008 479 309 10 8 484 16 441 1.74e-31 126
Msa1295940 AT1G20840.2 31.325 249 161 5 17 261 2 244 1.25e-30 126
Msa1295940 AT1G20840.2 28.295 258 157 6 254 496 489 733 1.10e-16 83.6
Msa1295940 AT1G20840.1 31.325 249 161 5 17 261 2 244 1.25e-30 126
Msa1295940 AT1G20840.1 28.295 258 157 6 254 496 489 733 1.10e-16 83.6
Msa1295940 AT3G20460.1 23.353 501 312 16 4 484 40 488 1.24e-29 122
Msa1295940 AT3G51490.2 30.315 254 152 8 23 257 8 255 1.94e-29 123
Msa1295940 AT3G51490.2 29.961 257 155 8 249 492 486 730 4.22e-21 97.4
Msa1295940 AT3G51490.1 30.315 254 152 8 23 257 8 255 2.09e-29 122
Msa1295940 AT3G51490.1 29.839 248 159 6 249 492 486 722 3.28e-19 91.7
Msa1295940 AT1G54730.8 27.340 406 237 9 7 408 20 371 2.11e-29 119
Msa1295940 AT1G08920.3 25.057 435 289 8 8 436 17 420 6.86e-29 119
Msa1295940 AT1G54730.11 27.988 343 215 6 7 347 20 332 8.22e-28 114
Msa1295940 AT3G05155.2 26.377 345 216 7 8 349 17 326 2.14e-26 110
Msa1295940 AT4G35300.9 32.821 195 122 4 30 219 15 205 8.34e-26 112
Msa1295940 AT4G35300.9 27.682 289 179 7 208 483 446 717 2.55e-20 95.1
Msa1295940 AT4G35300.2 32.821 195 122 4 30 219 15 205 8.34e-26 112
Msa1295940 AT4G35300.2 27.682 289 179 7 208 483 446 717 2.55e-20 95.1
Msa1295940 AT4G35300.3 32.821 195 122 4 30 219 15 205 8.34e-26 112
Msa1295940 AT4G35300.3 27.682 289 179 7 208 483 446 717 2.55e-20 95.1
Msa1295940 AT4G35300.4 32.323 198 125 4 30 222 15 208 8.62e-26 112
Msa1295940 AT4G35300.4 27.682 289 179 7 208 483 456 727 2.82e-20 94.7
Msa1295940 AT4G35300.8 32.323 198 125 4 30 222 15 208 8.62e-26 112
Msa1295940 AT4G35300.8 27.682 289 179 7 208 483 456 727 2.82e-20 94.7
Msa1295940 AT4G35300.6 32.323 198 125 4 30 222 15 208 8.62e-26 112
Msa1295940 AT4G35300.6 27.682 289 179 7 208 483 456 727 2.82e-20 94.7
Msa1295940 AT4G35300.11 32.323 198 125 4 30 222 15 208 8.62e-26 112
Msa1295940 AT4G35300.11 27.682 289 179 7 208 483 456 727 2.82e-20 94.7
Msa1295940 AT4G35300.1 32.323 198 125 4 30 222 15 208 8.62e-26 112
Msa1295940 AT4G35300.1 27.682 289 179 7 208 483 456 727 2.82e-20 94.7
Msa1295940 AT4G35300.10 32.323 198 125 4 30 222 15 208 8.62e-26 112
Msa1295940 AT4G35300.10 27.682 289 179 7 208 483 456 727 2.82e-20 94.7
Msa1295940 AT4G35300.7 32.323 198 125 4 30 222 15 208 8.62e-26 112
Msa1295940 AT4G35300.7 27.682 289 179 7 208 483 456 727 2.82e-20 94.7
Msa1295940 AT3G51490.3 33.503 197 112 6 76 257 13 205 1.54e-24 107
Msa1295940 AT3G51490.3 29.961 257 155 8 249 492 436 680 4.02e-21 97.4
Msa1295940 AT1G54730.10 27.832 309 195 5 7 313 20 302 1.97e-24 104
Msa1295940 AT1G54730.6 27.832 309 195 5 7 313 20 302 1.97e-24 104
Msa1295940 AT2G48020.4 26.260 377 234 9 6 375 19 358 8.89e-24 103
Msa1295940 AT2G48020.3 25.429 350 219 8 6 350 19 331 8.14e-21 94.4
Msa1295940 AT4G35300.5 27.682 289 179 7 208 483 259 530 3.68e-20 94.0
Msa1295940 AT1G79820.3 27.757 263 179 5 6 263 41 297 3.29e-17 84.3
Msa1295940 AT1G76430.1 21.536 534 339 14 18 495 18 527 2.79e-11 66.2

Find 127 sgRNAs with CRISPR-Local

Find 203 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATGGTGTCCATTGTTTC+TGG 0.176174 8_3:+54460285 Msa1295940:CDS
ATTAGGCTTAAATTTGTTAA+AGG 0.219009 8_3:-54459914 None:intergenic
TATGTTGCTTTCTTTAATAT+TGG 0.219271 8_3:+54462558 Msa1295940:CDS
CTGAAGAGTGAAATTTAATT+AGG 0.222316 8_3:-54459931 None:intergenic
AAAGCTTTGCCTTTAGTTTC+AGG 0.224380 8_3:-54462795 None:intergenic
AGTATACGTTGAGGTCTAAT+TGG 0.236736 8_3:-54460072 None:intergenic
GTTGTTCATAAAGGAAGATT+TGG 0.239451 8_3:+54461525 Msa1295940:CDS
ATGTTGCTTTCTTTAATATT+GGG 0.247224 8_3:+54462559 Msa1295940:CDS
CATCCTTGGTGCAGGTCTAA+TGG 0.255622 8_3:+54461681 Msa1295940:CDS
ACCATTAAAATCGCGTAGTT+TGG 0.273263 8_3:-54461712 None:intergenic
AGCACCGGAGGAATGATTAT+TGG 0.277723 8_3:+54462441 Msa1295940:CDS
ACTCTTATATAAACACGTTT+TGG 0.285370 8_3:+54460092 Msa1295940:five_prime_UTR
GATTATTGGGCTTACGCTAT+TGG 0.285439 8_3:+54462455 Msa1295940:CDS
GTGTCCATTGTTTCTGGTTA+TGG 0.292976 8_3:+54460291 Msa1295940:CDS
GCTTTCTTTAATATTGGGCT+TGG 0.305984 8_3:+54462564 Msa1295940:CDS
GAACTATAAACCCAAGTAAT+AGG 0.312160 8_3:-54462588 None:intergenic
CCGGAACTTTGTATTGGTAT+TGG 0.317318 8_3:+54461841 Msa1295940:CDS
AGGATTCTTAACCTCTTTAC+CGG 0.321405 8_3:+54461822 Msa1295940:CDS
ATCCTTGGTGCAGGTCTAAT+GGG 0.322241 8_3:+54461682 Msa1295940:CDS
TTGGGCTTGGGCCTATTACT+TGG 0.331261 8_3:+54462577 Msa1295940:CDS
ATTGGTATTGGAATCTTGTT+AGG 0.334944 8_3:+54461853 Msa1295940:CDS
CATAGAAACAACAGCATTCA+TGG 0.337986 8_3:-54462673 None:intergenic
AACTAAAGGCAAAGCTTTAG+AGG 0.338165 8_3:+54462800 Msa1295940:CDS
CTTACCAAGGTGAAGGGGTT+TGG 0.344928 8_3:+54462163 Msa1295940:CDS
CTTAAATTTGTTAAAGGAAA+GGG 0.353702 8_3:-54459908 None:intergenic
ATTATTGGGCTTACGCTATT+GGG 0.354837 8_3:+54462456 Msa1295940:CDS
GCACCGGAGGAATGATTATT+GGG 0.356340 8_3:+54462442 Msa1295940:CDS
AGGCAAAGCTTTAGAGGAAA+TGG 0.362549 8_3:+54462806 Msa1295940:CDS
ATCATGATGATGATGGTTAA+AGG 0.362579 8_3:-54460189 None:intergenic
CTTTCTTTAATATTGGGCTT+GGG 0.375420 8_3:+54462565 Msa1295940:CDS
GCCTCAATATTGTTCATCCT+TGG 0.375575 8_3:+54461667 Msa1295940:CDS
TTGTTCATAAAGGAAGATTT+GGG 0.381071 8_3:+54461526 Msa1295940:CDS
GGAGGTTCTTCCGGCTGTTA+AGG 0.389503 8_3:-54461611 None:intergenic
GGACACCATTGAAGCAACTA+TGG 0.402346 8_3:-54460274 None:intergenic
TTGGTTATGCAAGGTCAATT+AGG 0.404112 8_3:+54462009 Msa1295940:CDS
TCTTTACCGGAACTTTGTAT+TGG 0.405403 8_3:+54461835 Msa1295940:CDS
TTGTGCCATAGTTGCTTCAA+TGG 0.411172 8_3:+54460269 Msa1295940:CDS
ATTTGTTGAACGTGTTCGTT+TGG 0.417351 8_3:-54460236 None:intergenic
TGGGCTTGGGCCTATTACTT+GGG 0.420201 8_3:+54462578 Msa1295940:CDS
GATATTTCCTTTGAAGTTGA+GGG 0.420965 8_3:+54462614 Msa1295940:CDS
GGAAGATGTGTTTGTGGTGT+AGG 0.426049 8_3:+54461736 Msa1295940:CDS
TGGAGCAATGTTGTTCATAA+AGG 0.432311 8_3:+54461516 Msa1295940:CDS
GAAATTTCAGCTGAATAAAC+CGG 0.433520 8_3:-54461784 None:intergenic
ATCTATAAAGCTATCACAAT+AGG 0.446017 8_3:+54462708 Msa1295940:CDS
TACTTCTATGAAGCAAATCA+TGG 0.449321 8_3:+54462907 Msa1295940:three_prime_UTR
CCAATACCAATACAAAGTTC+CGG 0.459728 8_3:-54461841 None:intergenic
GGCCCATAAAACGTTTCCAT+TGG 0.462640 8_3:-54462505 None:intergenic
ATAGGTAGAGATACTTTGTT+GGG 0.462738 8_3:-54460041 None:intergenic
ACATACTAGACCTTCTGTAT+TGG 0.463685 8_3:-54462882 None:intergenic
CCTTGCATAACCAACCATCT+TGG 0.464751 8_3:-54462000 None:intergenic
TTAAACCTATGTGCATTAGT+AGG 0.465555 8_3:+54461586 Msa1295940:CDS
TTGCTTGCAACTATTGGAGT+AGG 0.469034 8_3:+54462342 Msa1295940:CDS
ATTTGAGTTTGAAACTTGGT+TGG 0.470871 8_3:+54461905 Msa1295940:CDS
ATTTCTTCTGCTTCATCAAG+AGG 0.471846 8_3:+54461802 Msa1295940:CDS
GTCTAATTGGGTGAATATAT+AGG 0.477015 8_3:-54460059 None:intergenic
AATGTAATCGGAGGTTCTTC+CGG 0.477347 8_3:-54461620 None:intergenic
ATATTGTTCATCCTTGGTGC+AGG 0.483894 8_3:+54461673 Msa1295940:CDS
TATAGGTAGAGATACTTTGT+TGG 0.484855 8_3:-54460042 None:intergenic
TGTGTTTGTGGTGTAGGTGT+TGG 0.486277 8_3:+54461742 Msa1295940:CDS
AAATATTTGAGTTTGAAACT+TGG 0.488815 8_3:+54461901 Msa1295940:CDS
ATTTGTTATCATGATGATGA+TGG 0.491802 8_3:-54460196 None:intergenic
GTATTGGAGTTGCTGTGAAT+AGG 0.501629 8_3:+54462649 Msa1295940:CDS
GGTGCAGGTCTAATGGGGTA+TGG 0.502064 8_3:+54461688 Msa1295940:CDS
GTAGCGACGTCCAATGTAAT+CGG 0.502796 8_3:-54461632 None:intergenic
CAAAACGCTACTACAAATGA+AGG 0.504432 8_3:-54461955 None:intergenic
GTAGAGATACTTTGTTGGGT+AGG 0.505276 8_3:-54460037 None:intergenic
CCTTTGAAGTTGAGGGCACA+AGG 0.507181 8_3:+54462621 Msa1295940:CDS
AGATATTTCCTTTGAAGTTG+AGG 0.507195 8_3:+54462613 Msa1295940:CDS
GCTTAAATTTGTTAAAGGAA+AGG 0.508460 8_3:-54459909 None:intergenic
TGGATGTTAATTGCTGCAGT+TGG 0.510887 8_3:+54462222 Msa1295940:CDS
ATCATCATGATAACAAATCA+AGG 0.511062 8_3:+54460201 Msa1295940:exon
ACTATTTGAATTTAATTCCA+AGG 0.512456 8_3:-54462939 None:intergenic
GTATACGTTGAGGTCTAATT+GGG 0.515358 8_3:-54460071 None:intergenic
AATATTAAAGAAAGCAACAT+AGG 0.515377 8_3:-54462556 None:intergenic
GGATGTTAATTGCTGCAGTT+GGG 0.515910 8_3:+54462223 Msa1295940:CDS
CATACGTTGCGACGATGCTA+AGG 0.516022 8_3:-54462533 None:intergenic
AATACAAAGTTCCGGTAAAG+AGG 0.522406 8_3:-54461833 None:intergenic
ATGGTTGGAAGATGTGTTTG+TGG 0.525527 8_3:+54461730 Msa1295940:CDS
ATAGAAAGATATCACGTTGA+GGG 0.527433 8_3:+54460128 Msa1295940:five_prime_UTR
ACCAACCATCTTGGTGACTC+AGG 0.530664 8_3:-54461991 None:intergenic
TAAAAGAGACACATAATTGA+CGG 0.530938 8_3:-54459992 None:intergenic
CTTGGTTGGAGATTAATGCT+TGG 0.531239 8_3:+54461919 Msa1295940:CDS
AGGGCACAAGGAGCAAGTAT+TGG 0.532018 8_3:+54462633 Msa1295940:CDS
TTAGATACTGGTGTTATGAG+TGG 0.541644 8_3:+54461496 Msa1295940:intron
TGCGACGATGCTAAGGATCA+AGG 0.543348 8_3:-54462526 None:intergenic
CTTTGCTCTTATGATAGCAC+CGG 0.543480 8_3:+54461765 Msa1295940:CDS
CCTTGTGCCCTCAACTTCAA+AGG 0.544461 8_3:-54462621 None:intergenic
AATCATGGTTGTATAGACCT+TGG 0.545245 8_3:+54462922 Msa1295940:three_prime_UTR
AAGCCCAATAATCATTCCTC+CGG 0.546220 8_3:-54462445 None:intergenic
TATAAAGCTATCACAATAGG+TGG 0.548135 8_3:+54462711 Msa1295940:CDS
AGCTTTAGAGGAAATGGAGA+TGG 0.549739 8_3:+54462812 Msa1295940:CDS
AGCAACTATGGCACAAGCAA+AGG 0.549760 8_3:-54460262 None:intergenic
CTTTGCCTTTAGTTTCAGGA+AGG 0.554311 8_3:-54462791 None:intergenic
CAAAAGTCTTACCAAGGTGA+AGG 0.555642 8_3:+54462156 Msa1295940:CDS
GACCAACACCTTCTGTACGT+TGG 0.561189 8_3:+54462202 Msa1295940:CDS
TCATGCCACACAAAACAGTA+AGG 0.563201 8_3:-54463072 None:intergenic
AAAAGTCTTACCAAGGTGAA+GGG 0.564435 8_3:+54462157 Msa1295940:CDS
CTTTCCAAACCCCTTCACCT+TGG 0.567910 8_3:-54462167 None:intergenic
AGAAGCAGAACTTCGTCTCA+AGG 0.568665 8_3:+54462074 Msa1295940:CDS
AAAAGAGACACATAATTGAC+GGG 0.570962 8_3:-54459991 None:intergenic
GGAAGAACCTCCGATTACAT+TGG 0.573049 8_3:+54461622 Msa1295940:CDS
GCCTGAGTCACCAAGATGGT+TGG 0.574736 8_3:+54461990 Msa1295940:CDS
TATCCACCACGGTCAAGCTA+AGG 0.577471 8_3:-54462479 None:intergenic
TTAGTAGGATCCTTAACAGC+CGG 0.586504 8_3:+54461601 Msa1295940:CDS
AATCTAGTGTATCTTTAACA+TGG 0.593595 8_3:+54463029 Msa1295940:three_prime_UTR
CCAAGATGGTTGGTTATGCA+AGG 0.598261 8_3:+54462000 Msa1295940:CDS
ACACAACAAGAGGTTCTAGC+AGG 0.599568 8_3:+54461559 Msa1295940:CDS
AGAAATGGATCCAATACAGA+AGG 0.599938 8_3:+54462872 Msa1295940:CDS
ACCGTGGTGGATAAATCCAA+TGG 0.605429 8_3:+54462489 Msa1295940:CDS
ACCAAGGATGAACAATATTG+AGG 0.606197 8_3:-54461668 None:intergenic
TCCTTGGTGCAGGTCTAATG+GGG 0.608348 8_3:+54461683 Msa1295940:CDS
TCCATTGGATTTATCCACCA+CGG 0.609860 8_3:-54462490 None:intergenic
AGGATCCTACTAATGCACAT+AGG 0.612414 8_3:-54461591 None:intergenic
GGGCCTTAGCTTGACCGTGG+TGG 0.612776 8_3:+54462476 Msa1295940:CDS
AATCAGCGACACACAACAAG+AGG 0.618953 8_3:+54461549 Msa1295940:CDS
TAGAAAGATATCACGTTGAG+GGG 0.619442 8_3:+54460129 Msa1295940:five_prime_UTR
CAATGCCTGAGTCACCAAGA+TGG 0.623341 8_3:+54461986 Msa1295940:CDS
ATTAACATCCAACGTACAGA+AGG 0.625113 8_3:-54462210 None:intergenic
AAAGTCTTACCAAGGTGAAG+GGG 0.626980 8_3:+54462158 Msa1295940:CDS
CGTACCATAACCAGAAACAA+TGG 0.627128 8_3:-54460295 None:intergenic
CATAGAAAGATATCACGTTG+AGG 0.639136 8_3:+54460127 Msa1295940:five_prime_UTR
ATTGGGCCTTAGCTTGACCG+TGG 0.664117 8_3:+54462473 Msa1295940:CDS
CTACCTCAAAAGTCTTACCA+AGG 0.666345 8_3:+54462150 Msa1295940:CDS
ATCCAACGTACAGAAGGTGT+TGG 0.670561 8_3:-54462204 None:intergenic
GCGACGTCCAATGTAATCGG+AGG 0.683787 8_3:-54461629 None:intergenic
ACCCCATTAGACCTGCACCA+AGG 0.701724 8_3:-54461684 None:intergenic
TTATATAAGAGTATACGTTG+AGG 0.724727 8_3:-54460081 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTAAATAAAATTAAAAG+TGG - chr8_3:54460346-54460365 None:intergenic 10.0%
!! CAAAAGAAAAAAAAAATTAT+TGG - chr8_3:54460394-54460413 None:intergenic 10.0%
!!! TAAGTAAAAAAACTTTTTTT+AGG - chr8_3:54460550-54460569 None:intergenic 10.0%
!!! TTATATATCAAACTATTTTA+TGG + chr8_3:54461876-54461895 Msa1295940:CDS 10.0%
!!! TATATATCAAACTATTTTAT+GGG + chr8_3:54461877-54461896 Msa1295940:CDS 10.0%
!!! ATTATAAACGAAAAACTTTT+AGG + chr8_3:54460471-54460490 Msa1295940:intron 15.0%
!!! TTTTTACTTATATTAATGAC+CGG + chr8_3:54460560-54460579 Msa1295940:intron 15.0%
!! AAAATGAAAAAATTGAATAG+AGG + chr8_3:54460718-54460737 Msa1295940:intron 15.0%
!!! AATAAATTAACTTGAAGAAA+AGG - chr8_3:54460762-54460781 None:intergenic 15.0%
!!! TTCAAGTTAATTTATTTTGA+GGG + chr8_3:54460766-54460785 Msa1295940:intron 15.0%
!! TGATATTTCATTCATAATAA+TGG + chr8_3:54460823-54460842 Msa1295940:intron 15.0%
!!! TAATTTGAGTTTTTATTTTG+AGG + chr8_3:54460880-54460899 Msa1295940:intron 15.0%
!!! AATTTGAGTTTTTATTTTGA+GGG + chr8_3:54460881-54460900 Msa1295940:intron 15.0%
!!! AGAACAAATTTTTTTGTTTT+CGG + chr8_3:54461074-54461093 Msa1295940:intron 15.0%
!! AAATTGCATTGAAAATTAAA+TGG - chr8_3:54461192-54461211 None:intergenic 15.0%
!!! CTTAAATTTGTTAAAGGAAA+GGG - chr8_3:54459911-54459930 None:intergenic 20.0%
!!! ATTAGGCTTAAATTTGTTAA+AGG - chr8_3:54459917-54459936 None:intergenic 20.0%
!!! TTTTCGTTTATAATTGTGAT+CGG - chr8_3:54460465-54460484 None:intergenic 20.0%
!! GAGTCAAAAAAAAATATTTG+TGG - chr8_3:54460616-54460635 None:intergenic 20.0%
!!! CTTCAAGTTAATTTATTTTG+AGG + chr8_3:54460765-54460784 Msa1295940:intron 20.0%
!! ATAATGGTAACAATAAAAGA+AGG + chr8_3:54460839-54460858 Msa1295940:intron 20.0%
!!! ACATGATTAATTTTAGATAC+TGG + chr8_3:54461484-54461503 Msa1295940:intron 20.0%
!!! AAATATTTGAGTTTGAAACT+TGG + chr8_3:54461901-54461920 Msa1295940:CDS 20.0%
!! AATATTAAAGAAAGCAACAT+AGG - chr8_3:54462559-54462578 None:intergenic 20.0%
!!! TATGTTGCTTTCTTTAATAT+TGG + chr8_3:54462558-54462577 Msa1295940:CDS 20.0%
!!! ATGTTGCTTTCTTTAATATT+GGG + chr8_3:54462559-54462578 Msa1295940:CDS 20.0%
!!! ATTTTTACCACTTGATTTTT+TGG - chr8_3:54462844-54462863 None:intergenic 20.0%
!! ACTATTTGAATTTAATTCCA+AGG - chr8_3:54462942-54462961 None:intergenic 20.0%
!!! GCTTAAATTTGTTAAAGGAA+AGG - chr8_3:54459912-54459931 None:intergenic 25.0%
! CTGAAGAGTGAAATTTAATT+AGG - chr8_3:54459934-54459953 None:intergenic 25.0%
! TAAAAGAGACACATAATTGA+CGG - chr8_3:54459995-54460014 None:intergenic 25.0%
!!! TATGTGTCTCTTTTAGTTTT+CGG + chr8_3:54460000-54460019 Msa1295940:five_prime_UTR 25.0%
!! TTATATAAGAGTATACGTTG+AGG - chr8_3:54460084-54460103 None:intergenic 25.0%
!! ACTCTTATATAAACACGTTT+TGG + chr8_3:54460092-54460111 Msa1295940:five_prime_UTR 25.0%
!!! ATTTGTTATCATGATGATGA+TGG - chr8_3:54460199-54460218 None:intergenic 25.0%
! ATCATCATGATAACAAATCA+AGG + chr8_3:54460201-54460220 Msa1295940:exon 25.0%
! CATTTAACAATTAGTGTATG+TGG + chr8_3:54460496-54460515 Msa1295940:intron 25.0%
!!! GTTTTTGTTTCTGATTTTTG+TGG - chr8_3:54460642-54460661 None:intergenic 25.0%
! ACAAAAACATGAATGTAACT+AGG + chr8_3:54460654-54460673 Msa1295940:intron 25.0%
! GTGGTTAATTGAACTTTATA+TGG + chr8_3:54460689-54460708 Msa1295940:intron 25.0%
! AATATGCACTTAAACAACAA+GGG - chr8_3:54460936-54460955 None:intergenic 25.0%
! AATACGATGCTTATTTAAGA+CGG + chr8_3:54461399-54461418 Msa1295940:intron 25.0%
! TTGTTCATAAAGGAAGATTT+GGG + chr8_3:54461526-54461545 Msa1295940:CDS 25.0%
!!! TTGTTTTTACTTGACAAACT+TGG + chr8_3:54462396-54462415 Msa1295940:CDS 25.0%
! ATCTATAAAGCTATCACAAT+AGG + chr8_3:54462708-54462727 Msa1295940:CDS 25.0%
!! GTTTTTACCAAAAAATCAAG+TGG + chr8_3:54462834-54462853 Msa1295940:CDS 25.0%
! AAAATCAAGTGGTAAAAATG+TGG + chr8_3:54462845-54462864 Msa1295940:CDS 25.0%
! TAAAAATGTGGCAATAGAAA+TGG + chr8_3:54462857-54462876 Msa1295940:CDS 25.0%
!! CAATTCAACATTTTCTAATG+TGG - chr8_3:54462993-54463012 None:intergenic 25.0%
! AATCTAGTGTATCTTTAACA+TGG + chr8_3:54463029-54463048 Msa1295940:three_prime_UTR 25.0%
AAAAGAGACACATAATTGAC+GGG - chr8_3:54459994-54460013 None:intergenic 30.0%
ATAGGTAGAGATACTTTGTT+GGG - chr8_3:54460044-54460063 None:intergenic 30.0%
TATAGGTAGAGATACTTTGT+TGG - chr8_3:54460045-54460064 None:intergenic 30.0%
GTCTAATTGGGTGAATATAT+AGG - chr8_3:54460062-54460081 None:intergenic 30.0%
ATAGAAAGATATCACGTTGA+GGG + chr8_3:54460128-54460147 Msa1295940:five_prime_UTR 30.0%
!! ATCATGATGATGATGGTTAA+AGG - chr8_3:54460192-54460211 None:intergenic 30.0%
TTACTTATATTAATGACCGG+AGG + chr8_3:54460563-54460582 Msa1295940:intron 30.0%
!!! AACTAGGTATTGTTTTTACG+TGG + chr8_3:54460670-54460689 Msa1295940:intron 30.0%
ATATGCACTTAAACAACAAG+GGG - chr8_3:54460935-54460954 None:intergenic 30.0%
CAATATGCACTTAAACAACA+AGG - chr8_3:54460937-54460956 None:intergenic 30.0%
! TCAAACGTGAAACTTCTTTT+GGG - chr8_3:54461138-54461157 None:intergenic 30.0%
! TTCAAACGTGAAACTTCTTT+TGG - chr8_3:54461139-54461158 None:intergenic 30.0%
! ATACGATGCTTATTTAAGAC+GGG + chr8_3:54461400-54461419 Msa1295940:intron 30.0%
TCACAAATAAAACACAGACA+TGG + chr8_3:54461431-54461450 Msa1295940:intron 30.0%
GTTGTTCATAAAGGAAGATT+TGG + chr8_3:54461525-54461544 Msa1295940:CDS 30.0%
TTAAACCTATGTGCATTAGT+AGG + chr8_3:54461586-54461605 Msa1295940:CDS 30.0%
GAAATTTCAGCTGAATAAAC+CGG - chr8_3:54461787-54461806 None:intergenic 30.0%
! ATTGGTATTGGAATCTTGTT+AGG + chr8_3:54461853-54461872 Msa1295940:CDS 30.0%
! ATTTGAGTTTGAAACTTGGT+TGG + chr8_3:54461905-54461924 Msa1295940:CDS 30.0%
!!! CCTGCTTTTTTGAAAATTCT+TGG - chr8_3:54462300-54462319 None:intergenic 30.0%
! CCAAGAATTTTCAAAAAAGC+AGG + chr8_3:54462297-54462316 Msa1295940:CDS 30.0%
! AATCCAATGGAAACGTTTTA+TGG + chr8_3:54462502-54462521 Msa1295940:CDS 30.0%
! ATCCAATGGAAACGTTTTAT+GGG + chr8_3:54462503-54462522 Msa1295940:CDS 30.0%
CTTTCTTTAATATTGGGCTT+GGG + chr8_3:54462565-54462584 Msa1295940:CDS 30.0%
GAACTATAAACCCAAGTAAT+AGG - chr8_3:54462591-54462610 None:intergenic 30.0%
!! AGATATTTCCTTTGAAGTTG+AGG + chr8_3:54462613-54462632 Msa1295940:CDS 30.0%
!! GATATTTCCTTTGAAGTTGA+GGG + chr8_3:54462614-54462633 Msa1295940:CDS 30.0%
TATAAAGCTATCACAATAGG+TGG + chr8_3:54462711-54462730 Msa1295940:CDS 30.0%
! TTTTTCCTTCCTGAAACTAA+AGG + chr8_3:54462786-54462805 Msa1295940:CDS 30.0%
TACTTCTATGAAGCAAATCA+TGG + chr8_3:54462907-54462926 Msa1295940:three_prime_UTR 30.0%
GTATACGTTGAGGTCTAATT+GGG - chr8_3:54460074-54460093 None:intergenic 35.0%
AGTATACGTTGAGGTCTAAT+TGG - chr8_3:54460075-54460094 None:intergenic 35.0%
CATAGAAAGATATCACGTTG+AGG + chr8_3:54460127-54460146 Msa1295940:five_prime_UTR 35.0%
TAGAAAGATATCACGTTGAG+GGG + chr8_3:54460129-54460148 Msa1295940:five_prime_UTR 35.0%
! ATTTGTTGAACGTGTTCGTT+TGG - chr8_3:54460239-54460258 None:intergenic 35.0%
TCGTTTATAATTGTGATCGG+AGG - chr8_3:54460462-54460481 None:intergenic 35.0%
TCGATGAGTAAGTAAGGTAT+GGG - chr8_3:54460526-54460545 None:intergenic 35.0%
TTCGATGAGTAAGTAAGGTA+TGG - chr8_3:54460527-54460546 None:intergenic 35.0%
TTAGGTTCGATGAGTAAGTA+AGG - chr8_3:54460532-54460551 None:intergenic 35.0%
! TTTTGTCTTGAGTAATCCTC+CGG - chr8_3:54460582-54460601 None:intergenic 35.0%
! ATGTTACTTGATCCCACTTA+GGG - chr8_3:54461104-54461123 None:intergenic 35.0%
! TATGTTACTTGATCCCACTT+AGG - chr8_3:54461105-54461124 None:intergenic 35.0%
! TACGATGCTTATTTAAGACG+GGG + chr8_3:54461401-54461420 Msa1295940:intron 35.0%
!! TTAGATACTGGTGTTATGAG+TGG + chr8_3:54461496-54461515 Msa1295940:intron 35.0%
TGGAGCAATGTTGTTCATAA+AGG + chr8_3:54461516-54461535 Msa1295940:CDS 35.0%
ACCAAGGATGAACAATATTG+AGG - chr8_3:54461671-54461690 None:intergenic 35.0%
! TCCAAACTACGCGATTTTAA+TGG + chr8_3:54461711-54461730 Msa1295940:CDS 35.0%
ACCATTAAAATCGCGTAGTT+TGG - chr8_3:54461715-54461734 None:intergenic 35.0%
!! AACTACGCGATTTTAATGGT+TGG + chr8_3:54461715-54461734 Msa1295940:CDS 35.0%
ATTTCTTCTGCTTCATCAAG+AGG + chr8_3:54461802-54461821 Msa1295940:CDS 35.0%
AGGATTCTTAACCTCTTTAC+CGG + chr8_3:54461822-54461841 Msa1295940:CDS 35.0%
AATACAAAGTTCCGGTAAAG+AGG - chr8_3:54461836-54461855 None:intergenic 35.0%
TCTTTACCGGAACTTTGTAT+TGG + chr8_3:54461835-54461854 Msa1295940:CDS 35.0%
CCAATACCAATACAAAGTTC+CGG - chr8_3:54461844-54461863 None:intergenic 35.0%
CAAAACGCTACTACAAATGA+AGG - chr8_3:54461958-54461977 None:intergenic 35.0%
TTGGTTATGCAAGGTCAATT+AGG + chr8_3:54462009-54462028 Msa1295940:CDS 35.0%
AAGGATATAAAAATCGCTGC+TGG + chr8_3:54462093-54462112 Msa1295940:CDS 35.0%
AAAAGTCTTACCAAGGTGAA+GGG + chr8_3:54462157-54462176 Msa1295940:CDS 35.0%
ATTAACATCCAACGTACAGA+AGG - chr8_3:54462213-54462232 None:intergenic 35.0%
!!! CATTTTTTCGAACATGCAAC+TGG + chr8_3:54462249-54462268 Msa1295940:CDS 35.0%
! AAGCTTTTGCTTGCAACTAT+TGG + chr8_3:54462336-54462355 Msa1295940:CDS 35.0%
! AGACTTTTGCAAATTAGCAC+CGG + chr8_3:54462426-54462445 Msa1295940:CDS 35.0%
ATTATTGGGCTTACGCTATT+GGG + chr8_3:54462456-54462475 Msa1295940:CDS 35.0%
GCTTTCTTTAATATTGGGCT+TGG + chr8_3:54462564-54462583 Msa1295940:CDS 35.0%
CATAGAAACAACAGCATTCA+TGG - chr8_3:54462676-54462695 None:intergenic 35.0%
!!! GGAAGTTTTTTCATGTTTGC+TGG + chr8_3:54462732-54462751 Msa1295940:CDS 35.0%
!!! CTGGTATATCTGTTTTAGCT+TGG + chr8_3:54462751-54462770 Msa1295940:CDS 35.0%
! AAAGCTTTGCCTTTAGTTTC+AGG - chr8_3:54462798-54462817 None:intergenic 35.0%
! AACTAAAGGCAAAGCTTTAG+AGG + chr8_3:54462800-54462819 Msa1295940:CDS 35.0%
AGAAATGGATCCAATACAGA+AGG + chr8_3:54462872-54462891 Msa1295940:CDS 35.0%
ACATACTAGACCTTCTGTAT+TGG - chr8_3:54462885-54462904 None:intergenic 35.0%
AATCATGGTTGTATAGACCT+TGG + chr8_3:54462922-54462941 Msa1295940:three_prime_UTR 35.0%
! TTTTGCCTTACTGTTTTGTG+TGG + chr8_3:54463067-54463086 Msa1295940:three_prime_UTR 35.0%
GTAGAGATACTTTGTTGGGT+AGG - chr8_3:54460040-54460059 None:intergenic 40.0%
TTGTGCCATAGTTGCTTCAA+TGG + chr8_3:54460269-54460288 Msa1295940:CDS 40.0%
TCAATGGTGTCCATTGTTTC+TGG + chr8_3:54460285-54460304 Msa1295940:CDS 40.0%
!! GTGTCCATTGTTTCTGGTTA+TGG + chr8_3:54460291-54460310 Msa1295940:CDS 40.0%
CGTACCATAACCAGAAACAA+TGG - chr8_3:54460298-54460317 None:intergenic 40.0%
CGATGAGTAAGTAAGGTATG+GGG - chr8_3:54460525-54460544 None:intergenic 40.0%
! AGGGATTCAAGTTTAGTGAC+CGG + chr8_3:54460900-54460919 Msa1295940:intron 40.0%
! TGTTTTCGGTTTTCCCTAAG+TGG + chr8_3:54461088-54461107 Msa1295940:intron 40.0%
! GTTTTCGGTTTTCCCTAAGT+GGG + chr8_3:54461089-54461108 Msa1295940:intron 40.0%
!! GAAACTTCTTTTGGGAAGGA+GGG - chr8_3:54461130-54461149 None:intergenic 40.0%
!! TGAAACTTCTTTTGGGAAGG+AGG - chr8_3:54461131-54461150 None:intergenic 40.0%
!! ACGTGAAACTTCTTTTGGGA+AGG - chr8_3:54461134-54461153 None:intergenic 40.0%
! ACGATGCTTATTTAAGACGG+GGG + chr8_3:54461402-54461421 Msa1295940:intron 40.0%
AGGATCCTACTAATGCACAT+AGG - chr8_3:54461594-54461613 None:intergenic 40.0%
TTAGTAGGATCCTTAACAGC+CGG + chr8_3:54461601-54461620 Msa1295940:CDS 40.0%
AATGTAATCGGAGGTTCTTC+CGG - chr8_3:54461623-54461642 None:intergenic 40.0%
GCCTCAATATTGTTCATCCT+TGG + chr8_3:54461667-54461686 Msa1295940:CDS 40.0%
! ATATTGTTCATCCTTGGTGC+AGG + chr8_3:54461673-54461692 Msa1295940:CDS 40.0%
ATGGTTGGAAGATGTGTTTG+TGG + chr8_3:54461730-54461749 Msa1295940:CDS 40.0%
CTTTGCTCTTATGATAGCAC+CGG + chr8_3:54461765-54461784 Msa1295940:CDS 40.0%
! CCGGAACTTTGTATTGGTAT+TGG + chr8_3:54461841-54461860 Msa1295940:CDS 40.0%
CTTGGTTGGAGATTAATGCT+TGG + chr8_3:54461919-54461938 Msa1295940:CDS 40.0%
CTACCTCAAAAGTCTTACCA+AGG + chr8_3:54462150-54462169 Msa1295940:CDS 40.0%
! TCACCTTGGTAAGACTTTTG+AGG - chr8_3:54462156-54462175 None:intergenic 40.0%
CAAAAGTCTTACCAAGGTGA+AGG + chr8_3:54462156-54462175 Msa1295940:CDS 40.0%
AAAGTCTTACCAAGGTGAAG+GGG + chr8_3:54462158-54462177 Msa1295940:CDS 40.0%
TGGATGTTAATTGCTGCAGT+TGG + chr8_3:54462222-54462241 Msa1295940:CDS 40.0%
GGATGTTAATTGCTGCAGTT+GGG + chr8_3:54462223-54462242 Msa1295940:CDS 40.0%
TTGCTTGCAACTATTGGAGT+AGG + chr8_3:54462342-54462361 Msa1295940:CDS 40.0%
AAGCCCAATAATCATTCCTC+CGG - chr8_3:54462448-54462467 None:intergenic 40.0%
GATTATTGGGCTTACGCTAT+TGG + chr8_3:54462455-54462474 Msa1295940:CDS 40.0%
TCCATTGGATTTATCCACCA+CGG - chr8_3:54462493-54462512 None:intergenic 40.0%
GTATTGGAGTTGCTGTGAAT+AGG + chr8_3:54462649-54462668 Msa1295940:CDS 40.0%
! CTTTGCCTTTAGTTTCAGGA+AGG - chr8_3:54462794-54462813 None:intergenic 40.0%
!! AGGCAAAGCTTTAGAGGAAA+TGG + chr8_3:54462806-54462825 Msa1295940:CDS 40.0%
!! AGCTTTAGAGGAAATGGAGA+TGG + chr8_3:54462812-54462831 Msa1295940:CDS 40.0%
TCATGCCACACAAAACAGTA+AGG - chr8_3:54463075-54463094 None:intergenic 40.0%
AGCAACTATGGCACAAGCAA+AGG - chr8_3:54460265-54460284 None:intergenic 45.0%
GGACACCATTGAAGCAACTA+TGG - chr8_3:54460277-54460296 None:intergenic 45.0%
CAACAAGGGGATCAAGAAAC+CGG - chr8_3:54460922-54460941 None:intergenic 45.0%
AATCAGCGACACACAACAAG+AGG + chr8_3:54461549-54461568 Msa1295940:CDS 45.0%
! ACACAACAAGAGGTTCTAGC+AGG + chr8_3:54461559-54461578 Msa1295940:CDS 45.0%
GGAAGAACCTCCGATTACAT+TGG + chr8_3:54461622-54461641 Msa1295940:CDS 45.0%
GTAGCGACGTCCAATGTAAT+CGG - chr8_3:54461635-54461654 None:intergenic 45.0%
! ATCCTTGGTGCAGGTCTAAT+GGG + chr8_3:54461682-54461701 Msa1295940:CDS 45.0%
GGAAGATGTGTTTGTGGTGT+AGG + chr8_3:54461736-54461755 Msa1295940:CDS 45.0%
TGTGTTTGTGGTGTAGGTGT+TGG + chr8_3:54461742-54461761 Msa1295940:CDS 45.0%
CCTTGCATAACCAACCATCT+TGG - chr8_3:54462003-54462022 None:intergenic 45.0%
! CCAAGATGGTTGGTTATGCA+AGG + chr8_3:54462000-54462019 Msa1295940:CDS 45.0%
AGAAGCAGAACTTCGTCTCA+AGG + chr8_3:54462074-54462093 Msa1295940:CDS 45.0%
! ATCCAACGTACAGAAGGTGT+TGG - chr8_3:54462207-54462226 None:intergenic 45.0%
!! CTTTTGCAAATTAGCACCGG+AGG + chr8_3:54462429-54462448 Msa1295940:CDS 45.0%
! AGCACCGGAGGAATGATTAT+TGG + chr8_3:54462441-54462460 Msa1295940:CDS 45.0%
GCACCGGAGGAATGATTATT+GGG + chr8_3:54462442-54462461 Msa1295940:CDS 45.0%
!! ACCGTGGTGGATAAATCCAA+TGG + chr8_3:54462489-54462508 Msa1295940:CDS 45.0%
GGCCCATAAAACGTTTCCAT+TGG - chr8_3:54462508-54462527 None:intergenic 45.0%
!! AAATTATCATTATTAATTAT+TGG - chr8_3:54461315-54461334 None:intergenic 5.0%
!! AATAATTAATAATGATAATT+TGG + chr8_3:54461314-54461333 Msa1295940:intron 5.0%
! CATCCTTGGTGCAGGTCTAA+TGG + chr8_3:54461681-54461700 Msa1295940:CDS 50.0%
! TCCTTGGTGCAGGTCTAATG+GGG + chr8_3:54461683-54461702 Msa1295940:CDS 50.0%
CAATGCCTGAGTCACCAAGA+TGG + chr8_3:54461986-54462005 Msa1295940:CDS 50.0%
! ACCAACCATCTTGGTGACTC+AGG - chr8_3:54461994-54462013 None:intergenic 50.0%
CTTACCAAGGTGAAGGGGTT+TGG + chr8_3:54462163-54462182 Msa1295940:CDS 50.0%
CTTTCCAAACCCCTTCACCT+TGG - chr8_3:54462170-54462189 None:intergenic 50.0%
GACCAACACCTTCTGTACGT+TGG + chr8_3:54462202-54462221 Msa1295940:CDS 50.0%
TATCCACCACGGTCAAGCTA+AGG - chr8_3:54462482-54462501 None:intergenic 50.0%
TGCGACGATGCTAAGGATCA+AGG - chr8_3:54462529-54462548 None:intergenic 50.0%
CATACGTTGCGACGATGCTA+AGG - chr8_3:54462536-54462555 None:intergenic 50.0%
TTGGGCTTGGGCCTATTACT+TGG + chr8_3:54462577-54462596 Msa1295940:CDS 50.0%
TGGGCTTGGGCCTATTACTT+GGG + chr8_3:54462578-54462597 Msa1295940:CDS 50.0%
CCTTGTGCCCTCAACTTCAA+AGG - chr8_3:54462624-54462643 None:intergenic 50.0%
!! CCTTTGAAGTTGAGGGCACA+AGG + chr8_3:54462621-54462640 Msa1295940:CDS 50.0%
AGGGCACAAGGAGCAAGTAT+TGG + chr8_3:54462633-54462652 Msa1295940:CDS 50.0%
GGAGGTTCTTCCGGCTGTTA+AGG - chr8_3:54461614-54461633 None:intergenic 55.0%
GCGACGTCCAATGTAATCGG+AGG - chr8_3:54461632-54461651 None:intergenic 55.0%
ACCCCATTAGACCTGCACCA+AGG - chr8_3:54461687-54461706 None:intergenic 55.0%
GGTGCAGGTCTAATGGGGTA+TGG + chr8_3:54461688-54461707 Msa1295940:CDS 55.0%
GCCTGAGTCACCAAGATGGT+TGG + chr8_3:54461990-54462009 Msa1295940:CDS 55.0%
! ATTGGGCCTTAGCTTGACCG+TGG + chr8_3:54462473-54462492 Msa1295940:CDS 55.0%
! GGGCCTTAGCTTGACCGTGG+TGG + chr8_3:54462476-54462495 Msa1295940:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 54459907 54463119 54459907 ID=Msa1295940;Name=Msa1295940
chr8_3 mRNA 54459907 54463119 54459907 ID=Msa1295940-mRNA-1;Parent=Msa1295940;Name=Msa1295940-mRNA-1;_AED=0.01;_eAED=0.01;_QI=300|1|1|1|0|0|2|220|501
chr8_3 exon 54459907 54460312 54459907 ID=Msa1295940-mRNA-1:exon:15655;Parent=Msa1295940-mRNA-1
chr8_3 exon 54461500 54463119 54461500 ID=Msa1295940-mRNA-1:exon:15656;Parent=Msa1295940-mRNA-1
chr8_3 five_prime_UTR 54459907 54460206 54459907 ID=Msa1295940-mRNA-1:five_prime_utr;Parent=Msa1295940-mRNA-1
chr8_3 CDS 54460207 54460312 54460207 ID=Msa1295940-mRNA-1:cds;Parent=Msa1295940-mRNA-1
chr8_3 CDS 54461500 54462899 54461500 ID=Msa1295940-mRNA-1:cds;Parent=Msa1295940-mRNA-1
chr8_3 three_prime_UTR 54462900 54463119 54462900 ID=Msa1295940-mRNA-1:three_prime_utr;Parent=Msa1295940-mRNA-1
Gene Sequence

>Msa1295940

ATGATAACAAATCAAGGTGATAAAGAAGACCAAACGAACACGTTCAACAAATATGCCTTTGCTTGTGCCATAGTTGCTTCAATGGTGTCCATTGTTTCTGGTTATGATACTGGTGTTATGAGTGGAGCAATGTTGTTCATAAAGGAAGATTTGGGAATCAGCGACACACAACAAGAGGTTCTAGCAGGAATCTTAAACCTATGTGCATTAGTAGGATCCTTAACAGCCGGAAGAACCTCCGATTACATTGGACGTCGCTACACAATCTTCTTAGCCTCAATATTGTTCATCCTTGGTGCAGGTCTAATGGGGTATGGTCCAAACTACGCGATTTTAATGGTTGGAAGATGTGTTTGTGGTGTAGGTGTTGGCTTTGCTCTTATGATAGCACCGGTTTATTCAGCTGAAATTTCTTCTGCTTCATCAAGAGGATTCTTAACCTCTTTACCGGAACTTTGTATTGGTATTGGAATCTTGTTAGGTTATATATCAAACTATTTTATGGGAAAATATTTGAGTTTGAAACTTGGTTGGAGATTAATGCTTGGTATTGCAGCTTTGCCTTCATTTGTAGTAGCGTTTTGTATTTTAACAATGCCTGAGTCACCAAGATGGTTGGTTATGCAAGGTCAATTAGGAAAAGCGAAAAAAGTTCTATTGCAAGTTTCAAACACAACGCAAGAAGCAGAACTTCGTCTCAAGGATATAAAAATCGCTGCTGGTTTAGACGAAAATTGCAACGATGAAATTGTGAAGCTACCTCAAAAGTCTTACCAAGGTGAAGGGGTTTGGAAAGAGTTGATTTTAAGACCAACACCTTCTGTACGTTGGATGTTAATTGCTGCAGTTGGGATTCATTTTTTCGAACATGCAACTGGTATTGAAGCTGTTATGTTATATAGTCCAAGAATTTTCAAAAAAGCAGGTGTTACAAGTAAAGAAAAGCTTTTGCTTGCAACTATTGGAGTAGGTTTAACAAAAATTGTTTTTCTTTTAATTGCTTTGTTTTTACTTGACAAACTTGGTAGAAGAAGACTTTTGCAAATTAGCACCGGAGGAATGATTATTGGGCTTACGCTATTGGGCCTTAGCTTGACCGTGGTGGATAAATCCAATGGAAACGTTTTATGGGCCTTGATCCTTAGCATCGTCGCAACGTATGCCTATGTTGCTTTCTTTAATATTGGGCTTGGGCCTATTACTTGGGTTTATAGTTCAGAGATATTTCCTTTGAAGTTGAGGGCACAAGGAGCAAGTATTGGAGTTGCTGTGAATAGGACCATGAATGCTGTTGTTTCTATGACTTTTATTTCAATCTATAAAGCTATCACAATAGGTGGAAGTTTTTTCATGTTTGCTGGTATATCTGTTTTAGCTTGGTTGTTTTTCTACTTTTTCCTTCCTGAAACTAAAGGCAAAGCTTTAGAGGAAATGGAGATGGTTTTTACCAAAAAATCAAGTGGTAAAAATGTGGCAATAGAAATGGATCCAATACAGAAGGTCTAG
Protein sequence

>Msa1295940

MITNQGDKEDQTNTFNKYAFACAIVASMVSIVSGYDTGVMSGAMLFIKEDLGISDTQQEVLAGILNLCALVGSLTAGRTSDYIGRRYTIFLASILFILGAGLMGYGPNYAILMVGRCVCGVGVGFALMIAPVYSAEISSASSRGFLTSLPELCIGIGILLGYISNYFMGKYLSLKLGWRLMLGIAALPSFVVAFCILTMPESPRWLVMQGQLGKAKKVLLQVSNTTQEAELRLKDIKIAAGLDENCNDEIVKLPQKSYQGEGVWKELILRPTPSVRWMLIAAVGIHFFEHATGIEAVMLYSPRIFKKAGVTSKEKLLLATIGVGLTKIVFLLIALFLLDKLGRRRLLQISTGGMIIGLTLLGLSLTVVDKSNGNVLWALILSIVATYAYVAFFNIGLGPITWVYSSEIFPLKLRAQGASIGVAVNRTMNAVVSMTFISIYKAITIGGSFFMFAGISVLAWLFFYFFLPETKGKALEEMEMVFTKKSSGKNVAIEMDPIQKV*