AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1255340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1255340 MtrunA17_Chr8g0373531 98.603 501 7 0 1 501 1 501 0.0 999
Msa1255340 MtrunA17_Chr5g0432581 83.200 500 83 1 1 499 1 500 0.0 865
Msa1255340 MtrunA17_Chr4g0034681 60.494 486 188 3 16 499 27 510 0.0 596
Msa1255340 MtrunA17_Chr3g0144361 60.625 480 184 4 7 484 17 493 0.0 583
Msa1255340 MtrunA17_Chr4g0036021 59.743 467 185 2 16 482 24 487 0.0 570
Msa1255340 MtrunA17_Chr5g0403831 55.925 481 209 2 11 489 23 502 0.0 538
Msa1255340 MtrunA17_Chr6g0485661 52.677 467 210 2 8 474 47 502 2.08e-169 488
Msa1255340 MtrunA17_Chr8g0390521 51.346 483 225 4 2 484 1 473 1.56e-162 470
Msa1255340 MtrunA17_Chr2g0282031 48.148 486 236 5 16 501 50 519 1.12e-154 451
Msa1255340 MtrunA17_Chr4g0021771 44.910 501 258 6 2 501 38 521 4.85e-152 444
Msa1255340 MtrunA17_Chr1g0213611 32.724 492 299 7 9 490 67 536 6.51e-74 243
Msa1255340 MtrunA17_Chr7g0214451 32.106 489 305 8 8 490 20 487 2.16e-71 235
Msa1255340 MtrunA17_Chr1g0213631 33.917 457 274 7 38 488 4 438 1.57e-67 224
Msa1255340 MtrunA17_Chr4g0039651 29.448 489 316 7 5 479 24 497 2.85e-62 211
Msa1255340 MtrunA17_Chr3g0115781 30.891 505 291 11 12 485 15 492 1.88e-61 209
Msa1255340 MtrunA17_Chr6g0457781 32.051 468 280 9 25 486 111 546 4.35e-58 201
Msa1255340 MtrunA17_Chr4g0032021 30.658 486 310 9 7 479 80 551 1.08e-57 200
Msa1255340 MtrunA17_Chr5g0420841 33.710 442 263 9 65 499 88 506 1.46e-57 199
Msa1255340 MtrunA17_Chr7g0250881 31.702 470 279 10 25 486 71 506 4.69e-56 195
Msa1255340 MtrunA17_Chr3g0115721 31.365 491 280 14 24 485 28 490 5.53e-56 194
Msa1255340 MtrunA17_Chr3g0115741 30.204 490 287 11 24 485 31 493 6.00e-56 194
Msa1255340 MtrunA17_Chr5g0417611 29.862 509 308 12 3 485 8 493 1.22e-54 191
Msa1255340 MtrunA17_Chr3g0085971 31.678 423 264 7 67 485 90 491 2.67e-54 190
Msa1255340 MtrunA17_Chr3g0128081 28.820 517 322 11 5 496 8 503 4.21e-53 187
Msa1255340 MtrunA17_Chr1g0155221 27.623 467 304 8 21 482 51 488 7.19e-53 186
Msa1255340 MtrunA17_Chr8g0373181 29.247 465 290 10 22 479 50 482 1.39e-52 185
Msa1255340 MtrunA17_Chr3g0078971 29.472 492 300 12 24 491 28 496 2.06e-52 185
Msa1255340 MtrunA17_Chr4g0048051 30.171 527 310 14 3 495 8 510 2.75e-52 185
Msa1255340 MtrunA17_Chr3g0078991 29.666 509 313 10 7 489 11 500 3.00e-52 184
Msa1255340 MtrunA17_Chr5g0394341 30.353 425 267 7 59 478 83 483 8.12e-52 184
Msa1255340 MtrunA17_Chr3g0115751 31.106 434 255 8 65 485 93 495 1.53e-51 182
Msa1255340 MtrunA17_Chr8g0390141 29.058 499 309 12 18 494 26 501 1.14e-50 181
Msa1255340 MtrunA17_Chr2g0303731 35.143 350 207 6 16 361 23 356 2.26e-50 181
Msa1255340 MtrunA17_Chr2g0303731 33.962 106 70 0 381 486 452 557 1.39e-13 73.2
Msa1255340 MtrunA17_Chr3g0128171 30.365 438 279 9 65 497 42 458 6.08e-50 177
Msa1255340 MtrunA17_Chr4g0048411 29.800 500 305 10 7 482 12 489 7.56e-50 178
Msa1255340 MtrunA17_Chr3g0115711 29.006 493 288 10 24 485 28 489 1.13e-49 177
Msa1255340 MtrunA17_Chr4g0066581 30.752 452 272 13 34 479 67 483 4.64e-49 176
Msa1255340 MtrunA17_Chr3g0078791 30.516 426 251 9 65 486 34 418 1.23e-48 173
Msa1255340 MtrunA17_Chr8g0390261 28.659 492 302 11 18 485 26 492 1.68e-48 174
Msa1255340 MtrunA17_Chr4g0065311 28.600 500 312 12 8 485 9 485 1.72e-48 174
Msa1255340 MtrunA17_Chr2g0303701 36.158 354 203 7 16 365 23 357 2.21e-48 175
Msa1255340 MtrunA17_Chr1g0164851 30.550 491 290 12 18 482 22 487 4.60e-48 174
Msa1255340 MtrunA17_Chr1g0164871 30.346 491 291 12 18 482 22 487 6.25e-48 173
Msa1255340 MtrunA17_Chr1g0205671 29.314 481 291 11 23 478 27 483 1.09e-47 172
Msa1255340 MtrunA17_Chr1g0205691 29.778 450 281 8 59 500 83 505 2.91e-47 171
Msa1255340 MtrunA17_Chr6g0486681 28.671 429 282 7 65 491 92 498 3.32e-47 171
Msa1255340 MtrunA17_Chr6g0486671 28.671 429 282 7 65 491 92 498 3.32e-47 171
Msa1255340 MtrunA17_Chr4g0065324 27.778 504 318 11 4 485 14 493 7.60e-47 170
Msa1255340 MtrunA17_Chr7g0273281 27.311 476 301 8 15 489 71 502 1.51e-46 169
Msa1255340 MtrunA17_Chr7g0259471 29.167 480 304 11 3 479 24 470 2.63e-46 167
Msa1255340 MtrunA17_Chr1g0205681 30.698 430 268 9 55 478 79 484 3.64e-46 168
Msa1255340 MtrunA17_Chr3g0119401 28.602 472 305 9 19 486 93 536 4.18e-46 168
Msa1255340 MtrunA17_Chr2g0286721 30.248 443 260 12 47 479 77 480 7.71e-46 167
Msa1255340 MtrunA17_Chr8g0376631 33.631 336 203 6 16 347 23 342 4.89e-44 163
Msa1255340 MtrunA17_Chr8g0376631 35.849 106 68 0 381 486 451 556 7.43e-15 77.0
Msa1255340 MtrunA17_Chr8g0376601 35.328 351 205 7 16 361 23 356 4.97e-44 163
Msa1255340 MtrunA17_Chr8g0376601 36.957 92 58 0 381 472 450 541 3.39e-11 65.5
Msa1255340 MtrunA17_Chr3g0121674 32.177 317 185 7 181 490 1 294 1.07e-43 156
Msa1255340 MtrunA17_Chr2g0290181 31.467 375 231 8 7 370 10 369 1.17e-43 162
Msa1255340 MtrunA17_Chr2g0290181 38.095 105 65 0 380 484 454 558 5.40e-16 80.9
Msa1255340 MtrunA17_Chr8g0373191 26.483 472 292 10 18 484 38 459 1.68e-43 160
Msa1255340 MtrunA17_Chr7g0259221 29.668 482 299 13 6 479 23 472 7.13e-43 158
Msa1255340 MtrunA17_Chr5g0445601 28.221 489 307 11 18 485 26 491 5.19e-42 156
Msa1255340 MtrunA17_Chr7g0257631 27.789 511 325 11 2 491 44 531 6.32e-42 157
Msa1255340 MtrunA17_Chr5g0437021 27.600 500 293 15 18 482 22 487 9.47e-42 156
Msa1255340 MtrunA17_Chr6g0486021 28.571 490 302 14 1 480 33 484 1.32e-39 149
Msa1255340 MtrunA17_Chr3g0115731 28.942 501 258 17 24 485 28 469 1.84e-39 149
Msa1255340 MtrunA17_Chr4g0004821 28.747 487 301 13 7 480 17 470 3.59e-39 148
Msa1255340 MtrunA17_Chr8g0376611 34.495 287 169 5 69 353 12 281 6.69e-38 145
Msa1255340 MtrunA17_Chr8g0376611 33.019 106 71 0 381 486 382 487 1.34e-13 73.2
Msa1255340 MtrunA17_Chr3g0144261 35.294 204 129 2 17 219 2 203 4.81e-32 130
Msa1255340 MtrunA17_Chr3g0144261 30.315 254 149 8 254 490 487 729 2.63e-21 97.8
Msa1255340 MtrunA17_Chr4g0065351 29.545 352 221 9 143 491 7 334 3.45e-30 120
Msa1255340 MtrunA17_Chr2g0290161 29.352 293 163 7 77 366 21 272 1.49e-29 121
Msa1255340 MtrunA17_Chr2g0290161 36.190 105 67 0 380 484 361 465 4.89e-12 68.2
Msa1255340 MtrunA17_Chr8g0370141 30.392 204 135 4 23 222 8 208 1.42e-25 108
Msa1255340 MtrunA17_Chr5g0407441 30.252 238 156 5 23 254 8 241 3.48e-25 109
Msa1255340 MtrunA17_Chr5g0407441 27.935 247 145 7 247 476 473 703 5.50e-16 80.9
Msa1255340 MtrunA17_Chr3g0146061 31.140 228 147 5 30 251 15 238 1.38e-24 107
Msa1255340 MtrunA17_Chr3g0146061 26.339 224 145 5 264 476 507 721 3.06e-17 85.1
Msa1255340 MtrunA17_Chr5g0419321 29.358 218 148 4 41 254 54 269 1.36e-23 104
Msa1255340 MtrunA17_Chr5g0419321 30.303 231 127 5 264 476 515 729 7.37e-18 87.0
Msa1255340 MtrunA17_Chr5g0404191 28.704 216 146 1 22 237 53 260 1.98e-23 100
Msa1255340 MtrunA17_Chr7g0273261 30.667 225 146 4 279 501 42 258 2.86e-23 99.0
Msa1255340 MtrunA17_Chr5g0434231 32.240 183 91 4 51 232 2 152 3.38e-21 90.1
Msa1255340 MtrunA17_Chr7g0273271 29.648 199 132 1 8 206 16 206 3.86e-18 83.2
Msa1255340 MtrunA17_Chr8g0370151 25.225 222 150 3 264 476 128 342 2.50e-15 77.4
Msa1255340 MtrunA17_Chr5g0434251 33.019 106 71 0 381 486 38 143 6.73e-15 72.4
Msa1255340 MtrunA17_Chr3g0115771 25.220 341 181 12 129 465 7 277 2.99e-14 73.2
Msa1255340 MtrunA17_Chr4g0000061 22.246 463 297 14 47 477 57 488 4.38e-13 71.2
Msa1255340 MtrunA17_Chr5g0446681 30.968 155 91 2 5 159 8 146 7.58e-13 69.3
Msa1255340 MtrunA17_Chr5g0404181 33.010 103 68 1 380 482 30 131 1.55e-11 62.0
Msa1255340 MtrunA17_Chr5g0434261 36.000 100 61 1 374 473 208 304 4.29e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1255340 AT4G36670.1 67.500 480 152 2 16 492 14 492 0.0 670
Msa1255340 AT2G18480.1 70.675 474 137 2 9 482 12 483 0.0 658
Msa1255340 AT3G18830.1 58.974 468 191 1 16 483 33 499 0.0 590
Msa1255340 AT2G16120.1 56.098 492 213 3 7 496 14 504 0.0 565
Msa1255340 AT2G16130.1 56.289 485 210 2 7 490 14 497 0.0 565
Msa1255340 AT2G20780.1 45.090 499 254 5 4 501 40 519 5.94e-151 441
Msa1255340 AT2G20780.2 44.880 459 233 5 44 501 22 461 1.33e-135 400
Msa1255340 AT2G43330.1 31.447 477 306 5 16 489 28 486 8.50e-66 221
Msa1255340 AT1G75220.1 30.258 466 292 6 21 482 50 486 5.89e-59 202
Msa1255340 AT5G16150.2 32.974 464 277 8 25 484 111 544 1.46e-58 203
Msa1255340 AT5G16150.1 32.974 464 277 8 25 484 111 544 1.46e-58 203
Msa1255340 AT5G16150.3 32.974 464 277 8 25 484 111 544 1.46e-58 203
Msa1255340 AT5G17010.1 33.735 415 252 6 69 479 104 499 3.15e-58 201
Msa1255340 AT5G17010.3 33.735 415 252 6 69 479 104 499 3.15e-58 201
Msa1255340 AT5G17010.4 33.735 415 252 6 69 479 104 499 3.15e-58 201
Msa1255340 AT5G26250.1 30.661 499 304 10 1 479 4 480 7.94e-58 200
Msa1255340 AT1G11260.1 30.470 489 290 13 20 482 25 489 1.22e-56 197
Msa1255340 AT3G03090.1 31.938 454 285 9 34 479 62 499 8.56e-56 194
Msa1255340 AT5G27350.1 29.006 493 310 9 2 490 16 472 2.52e-55 192
Msa1255340 AT3G05160.1 28.893 488 305 9 1 483 5 455 7.14e-55 191
Msa1255340 AT1G50310.1 28.889 495 298 13 24 490 30 498 8.58e-55 192
Msa1255340 AT5G59250.1 30.043 466 301 7 24 479 103 553 4.38e-54 191
Msa1255340 AT5G27360.1 28.657 499 304 10 2 490 20 476 5.75e-54 189
Msa1255340 AT3G19930.1 30.841 428 258 9 65 482 88 487 5.79e-54 190
Msa1255340 AT3G19930.2 30.841 428 258 9 65 482 88 487 5.79e-54 190
Msa1255340 AT1G19450.1 29.211 469 295 7 20 482 50 487 8.70e-54 189
Msa1255340 AT3G05960.1 30.722 485 288 12 18 479 20 479 1.08e-53 189
Msa1255340 AT5G27360.3 28.657 499 304 10 2 490 68 524 1.88e-53 189
Msa1255340 AT3G19940.1 29.652 489 291 11 24 485 30 492 3.53e-52 185
Msa1255340 AT4G02050.2 29.307 505 311 11 9 491 17 497 4.86e-52 184
Msa1255340 AT4G02050.1 29.307 505 311 11 9 491 17 497 4.86e-52 184
Msa1255340 AT3G05165.3 28.685 502 294 11 1 486 14 467 5.86e-52 183
Msa1255340 AT3G05165.2 28.685 502 294 11 1 486 14 467 5.86e-52 183
Msa1255340 AT3G05165.1 28.685 502 294 11 1 486 14 467 5.86e-52 183
Msa1255340 AT4G21480.1 29.084 502 308 11 6 482 9 487 4.17e-51 182
Msa1255340 AT5G26340.1 30.247 486 294 11 24 485 28 492 4.32e-51 182
Msa1255340 AT5G23270.1 29.287 519 300 14 2 485 7 493 7.10e-51 181
Msa1255340 AT3G05150.2 31.013 474 278 14 25 485 37 474 2.41e-50 179
Msa1255340 AT1G30220.1 36.932 352 198 7 16 361 25 358 3.44e-50 181
Msa1255340 AT1G30220.1 37.755 98 61 0 389 486 463 560 4.35e-15 78.6
Msa1255340 AT5G18840.1 28.807 486 309 11 7 486 28 482 9.65e-50 177
Msa1255340 AT3G05150.1 30.901 466 275 13 25 479 37 466 1.56e-49 177
Msa1255340 AT3G05150.3 30.901 466 275 13 25 479 37 466 1.56e-49 177
Msa1255340 AT3G05160.3 29.358 436 276 7 49 483 2 406 7.41e-49 173
Msa1255340 AT3G05160.2 29.358 436 276 7 49 483 2 406 7.41e-49 173
Msa1255340 AT1G77210.2 29.389 507 301 13 18 496 26 503 7.49e-49 176
Msa1255340 AT1G77210.1 29.389 507 301 13 18 496 26 503 7.49e-49 176
Msa1255340 AT1G54730.2 29.350 477 299 10 7 479 20 462 5.04e-48 172
Msa1255340 AT1G08900.1 27.879 495 297 13 7 486 13 462 1.35e-46 169
Msa1255340 AT1G08900.2 27.879 495 297 13 7 486 13 462 1.35e-46 169
Msa1255340 AT5G61520.1 27.692 520 315 14 1 485 1 494 1.38e-46 170
Msa1255340 AT1G08900.5 28.791 455 264 13 47 486 11 420 2.15e-46 167
Msa1255340 AT1G08930.1 28.211 475 307 12 7 479 46 488 2.47e-46 169
Msa1255340 AT1G08930.2 28.211 475 307 12 7 479 46 488 2.47e-46 169
Msa1255340 AT1G08900.3 28.791 455 264 13 47 486 45 454 2.78e-46 167
Msa1255340 AT5G61520.2 28.604 437 281 8 65 496 47 457 1.94e-45 166
Msa1255340 AT1G07340.1 29.545 484 290 12 20 478 24 481 3.43e-45 166
Msa1255340 AT1G05030.1 30.063 479 290 13 19 487 79 522 3.92e-45 166
Msa1255340 AT1G34580.1 28.834 489 298 11 24 485 29 494 5.91e-44 162
Msa1255340 AT4G04750.1 27.778 450 279 10 47 487 64 476 7.10e-44 162
Msa1255340 AT4G04750.2 27.778 450 279 10 47 487 64 476 7.10e-44 162
Msa1255340 AT1G34580.2 29.907 428 271 8 65 485 39 444 1.02e-43 160
Msa1255340 AT4G04750.3 27.778 450 279 10 47 487 108 520 1.45e-43 162
Msa1255340 AT2G35740.1 32.172 373 226 10 2 361 1 359 1.83e-43 162
Msa1255340 AT2G35740.1 37.374 99 62 0 381 479 458 556 1.07e-13 73.9
Msa1255340 AT3G05165.6 27.600 500 287 11 1 484 14 454 9.02e-43 159
Msa1255340 AT4G16480.2 32.240 366 226 8 5 361 8 360 1.31e-42 160
Msa1255340 AT4G16480.2 37.374 99 62 0 381 479 459 557 2.23e-14 76.3
Msa1255340 AT4G16480.3 32.240 366 226 8 5 361 8 360 1.31e-42 160
Msa1255340 AT4G16480.3 37.374 99 62 0 381 479 459 557 2.23e-14 76.3
Msa1255340 AT4G16480.1 32.240 366 226 8 5 361 8 360 1.31e-42 160
Msa1255340 AT4G16480.1 37.374 99 62 0 381 479 459 557 2.23e-14 76.3
Msa1255340 AT1G08890.1 28.294 463 286 12 25 479 33 457 1.71e-42 157
Msa1255340 AT1G67300.2 30.181 497 300 14 1 485 32 493 7.34e-42 156
Msa1255340 AT3G05155.1 27.158 475 307 8 8 479 17 455 9.24e-42 155
Msa1255340 AT1G54730.3 29.032 434 271 9 7 436 20 420 9.37e-42 155
Msa1255340 AT5G27360.2 28.325 406 253 7 89 490 1 372 1.20e-41 153
Msa1255340 AT5G27360.5 28.325 406 253 7 89 490 1 372 1.20e-41 153
Msa1255340 AT1G67300.1 29.920 498 299 15 1 485 32 492 1.49e-41 155
Msa1255340 AT1G67300.3 29.920 498 299 15 1 485 32 492 1.49e-41 155
Msa1255340 AT2G48020.2 27.329 483 303 11 6 481 19 460 1.54e-41 155
Msa1255340 AT2G48020.1 27.329 483 303 11 6 481 19 460 1.54e-41 155
Msa1255340 AT3G05165.4 28.670 436 248 10 1 420 14 402 7.46e-41 153
Msa1255340 AT3G05165.5 28.670 436 248 10 1 420 14 402 7.46e-41 153
Msa1255340 AT1G54730.5 27.883 477 285 11 7 479 20 441 8.79e-41 152
Msa1255340 AT1G05030.2 29.412 459 279 13 39 487 47 470 5.77e-40 150
Msa1255340 AT1G79820.2 29.814 483 296 13 6 480 41 488 1.36e-39 150
Msa1255340 AT1G79820.1 29.814 483 296 13 6 480 41 488 1.36e-39 150
Msa1255340 AT1G50310.2 29.076 368 227 11 131 490 14 355 2.24e-39 147
Msa1255340 AT5G27360.4 27.635 427 258 9 2 418 20 405 1.06e-38 146
Msa1255340 AT4G04760.1 25.474 475 300 9 18 485 43 470 1.20e-38 147
Msa1255340 AT4G04760.3 25.676 444 289 7 49 485 2 411 1.61e-38 145
Msa1255340 AT1G77210.3 29.630 378 230 9 127 496 5 354 4.23e-37 140
Msa1255340 AT1G08900.4 27.376 442 266 11 8 436 14 413 6.22e-37 141
Msa1255340 AT1G67300.6 30.365 438 255 15 1 425 32 432 6.99e-37 142
Msa1255340 AT1G67300.7 30.365 438 255 15 1 425 32 432 6.99e-37 142
Msa1255340 AT1G67300.4 30.769 429 247 15 1 416 32 423 1.31e-36 140
Msa1255340 AT1G67300.5 30.769 429 247 15 1 416 32 423 1.31e-36 140
Msa1255340 AT1G54730.9 29.877 405 249 10 7 408 20 392 3.43e-36 139
Msa1255340 AT1G54730.7 29.877 405 249 10 7 408 20 392 3.43e-36 139
Msa1255340 AT3G05400.1 24.324 481 329 9 6 484 14 461 1.35e-35 138
Msa1255340 AT1G08920.1 25.466 483 322 10 8 484 17 467 9.49e-35 136
Msa1255340 AT1G54730.4 27.880 434 255 10 7 436 20 399 1.26e-34 135
Msa1255340 AT1G79820.4 29.882 425 261 11 6 425 41 433 1.18e-33 132
Msa1255340 AT1G08920.2 25.306 490 321 11 8 484 17 474 1.92e-33 132
Msa1255340 AT4G04760.2 24.686 478 297 10 18 485 43 467 2.68e-33 132
Msa1255340 AT5G17010.2 28.675 415 209 8 69 479 105 436 1.66e-32 129
Msa1255340 AT1G20840.2 31.325 249 161 5 17 261 2 244 4.64e-31 127
Msa1255340 AT1G20840.2 28.295 258 157 6 254 496 489 733 9.24e-17 84.0
Msa1255340 AT1G20840.1 31.325 249 161 5 17 261 2 244 4.64e-31 127
Msa1255340 AT1G20840.1 28.295 258 157 6 254 496 489 733 9.24e-17 84.0
Msa1255340 AT3G05400.2 23.800 479 310 10 8 484 16 441 5.86e-31 125
Msa1255340 AT3G20460.1 23.790 496 316 14 4 484 40 488 7.61e-30 122
Msa1255340 AT3G51490.2 30.196 255 153 8 23 258 8 256 9.23e-30 124
Msa1255340 AT3G51490.2 29.961 257 155 8 249 492 486 730 2.51e-21 98.2
Msa1255340 AT3G51490.1 30.196 255 153 8 23 258 8 256 1.06e-29 124
Msa1255340 AT3G51490.1 29.839 248 159 6 249 492 486 722 2.07e-19 92.0
Msa1255340 AT1G54730.8 27.901 405 236 11 7 408 20 371 2.35e-29 119
Msa1255340 AT1G08920.3 25.057 435 289 8 8 436 17 420 1.56e-28 118
Msa1255340 AT1G54730.11 28.280 343 214 7 7 347 20 332 1.39e-27 113
Msa1255340 AT3G05155.2 26.377 345 216 7 8 349 17 326 5.22e-26 108
Msa1255340 AT4G35300.4 32.323 198 125 4 30 222 15 208 6.57e-26 112
Msa1255340 AT4G35300.4 27.682 289 179 7 208 483 456 727 2.87e-20 94.7
Msa1255340 AT4G35300.8 32.323 198 125 4 30 222 15 208 6.57e-26 112
Msa1255340 AT4G35300.8 27.682 289 179 7 208 483 456 727 2.87e-20 94.7
Msa1255340 AT4G35300.6 32.323 198 125 4 30 222 15 208 6.57e-26 112
Msa1255340 AT4G35300.6 27.682 289 179 7 208 483 456 727 2.87e-20 94.7
Msa1255340 AT4G35300.11 32.323 198 125 4 30 222 15 208 6.57e-26 112
Msa1255340 AT4G35300.11 27.682 289 179 7 208 483 456 727 2.87e-20 94.7
Msa1255340 AT4G35300.1 32.323 198 125 4 30 222 15 208 6.57e-26 112
Msa1255340 AT4G35300.1 27.682 289 179 7 208 483 456 727 2.87e-20 94.7
Msa1255340 AT4G35300.10 32.323 198 125 4 30 222 15 208 6.57e-26 112
Msa1255340 AT4G35300.10 27.682 289 179 7 208 483 456 727 2.87e-20 94.7
Msa1255340 AT4G35300.7 32.323 198 125 4 30 222 15 208 6.57e-26 112
Msa1255340 AT4G35300.7 27.682 289 179 7 208 483 456 727 2.87e-20 94.7
Msa1255340 AT4G35300.9 32.821 195 122 4 30 219 15 205 6.84e-26 112
Msa1255340 AT4G35300.9 27.682 289 179 7 208 483 446 717 3.16e-20 94.7
Msa1255340 AT4G35300.2 32.821 195 122 4 30 219 15 205 6.84e-26 112
Msa1255340 AT4G35300.2 27.682 289 179 7 208 483 446 717 3.16e-20 94.7
Msa1255340 AT4G35300.3 32.821 195 122 4 30 219 15 205 6.84e-26 112
Msa1255340 AT4G35300.3 27.682 289 179 7 208 483 446 717 3.16e-20 94.7
Msa1255340 AT3G51490.3 33.333 198 113 6 76 258 13 206 7.20e-25 108
Msa1255340 AT3G51490.3 29.961 257 155 8 249 492 436 680 2.25e-21 98.2
Msa1255340 AT1G54730.10 28.155 309 194 6 7 313 20 302 3.03e-24 103
Msa1255340 AT1G54730.6 28.155 309 194 6 7 313 20 302 3.03e-24 103
Msa1255340 AT2G48020.4 26.260 377 234 9 6 375 19 358 7.93e-24 103
Msa1255340 AT2G48020.3 25.429 350 219 8 6 350 19 331 7.34e-21 94.4
Msa1255340 AT4G35300.5 27.682 289 179 7 208 483 259 530 4.13e-20 94.0
Msa1255340 AT1G79820.3 30.275 218 141 5 6 218 41 252 5.65e-17 83.6
Msa1255340 AT1G76430.1 21.429 532 342 14 18 495 18 527 3.63e-11 65.9

Find 123 sgRNAs with CRISPR-Local

Find 202 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAATGGTGTCCATTGTTTC+TGG 0.176174 8_2:-53827054 Msa1255340:CDS
ATTAGGCTTAAATTTGTTAA+AGG 0.219009 8_2:+53827425 None:intergenic
AAAGCTTTGCCTTTAGTTTC+AGG 0.224380 8_2:+53824588 None:intergenic
AGTATACGTTGAGGTCTAAT+TGG 0.236736 8_2:+53827267 None:intergenic
TATGTTGCTTTCTTTAATAT+TGG 0.239121 8_2:-53824825 Msa1255340:CDS
GTTGTTCATAAAGGAAGATT+TGG 0.239451 8_2:-53825858 Msa1255340:CDS
ATGTTGCTTTCTTTAATATT+GGG 0.247224 8_2:-53824824 Msa1255340:CDS
CATCCTTGGTGCAGGTCTAA+TGG 0.255622 8_2:-53825702 Msa1255340:CDS
AGCACTGGAGGAATGATTAT+TGG 0.255900 8_2:-53824942 Msa1255340:CDS
CTCAAGAGTGAAATTTAATT+AGG 0.266851 8_2:+53827408 None:intergenic
ACCATTAAAATCGCGTAGTT+TGG 0.273263 8_2:+53825671 None:intergenic
GATTATTGGGCTTACGCTAT+TGG 0.276072 8_2:-53824928 Msa1255340:CDS
ACTCTTATATAAACACGTTT+TGG 0.285370 8_2:-53827247 Msa1255340:five_prime_UTR
GTGTCCATTGTTTCTGGTTA+TGG 0.292976 8_2:-53827048 Msa1255340:intron
GCTTTCTTTAATATTGGGCT+TGG 0.305984 8_2:-53824819 Msa1255340:CDS
GAACTATAAACCCAAGTAAT+AGG 0.312160 8_2:+53824795 None:intergenic
CCGGAACTTTGTATTGGTAT+TGG 0.317318 8_2:-53825542 Msa1255340:CDS
AGGATTCTTAACCTCTTTAC+CGG 0.321405 8_2:-53825561 Msa1255340:CDS
ATCCTTGGTGCAGGTCTAAT+GGG 0.322241 8_2:-53825701 Msa1255340:CDS
TTGGGCTTGGGCCTATTACT+TGG 0.331261 8_2:-53824806 Msa1255340:CDS
ATTGGTATTGGAATCTTGTT+AGG 0.334944 8_2:-53825530 Msa1255340:CDS
AACTAAAGGCAAAGCTTTAG+AGG 0.338165 8_2:-53824583 Msa1255340:CDS
GCACTGGAGGAATGATTATT+GGG 0.352513 8_2:-53824941 Msa1255340:CDS
CTTAAATTTGTTAAAGGAAA+GGG 0.353702 8_2:+53827431 None:intergenic
ATTATTGGGCTTACGCTATT+GGG 0.356624 8_2:-53824927 Msa1255340:CDS
GAAATTTCAGCTGAATAAAC+TGG 0.361072 8_2:+53825599 None:intergenic
CTCACCAAGGTGAAGGGGTT+TGG 0.362291 8_2:-53825220 Msa1255340:CDS
AGGCAAAGCTTTAGAGGAAA+TGG 0.362549 8_2:-53824577 Msa1255340:CDS
ATCATGATGATGATGGTTAA+AGG 0.362579 8_2:+53827150 None:intergenic
CATGGAAACAACAGCATTCA+TGG 0.369966 8_2:+53824710 None:intergenic
CTTTCTTTAATATTGGGCTT+GGG 0.375420 8_2:-53824818 Msa1255340:CDS
GCCTCAATATTGTTCATCCT+TGG 0.375575 8_2:-53825716 Msa1255340:CDS
TTGTTCATAAAGGAAGATTT+GGG 0.381071 8_2:-53825857 Msa1255340:CDS
GGAGGTTCTTCCGGCTGTTA+AGG 0.389503 8_2:+53825772 None:intergenic
GGACACCATTGAAGCAACTA+TGG 0.402346 8_2:+53827065 None:intergenic
TCTTTACCGGAACTTTGTAT+TGG 0.405403 8_2:-53825548 Msa1255340:CDS
TTGTGCCATAGTTGCTTCAA+TGG 0.411172 8_2:-53827070 Msa1255340:CDS
ATTTGTTGAACGTGTTCGTT+TGG 0.417351 8_2:+53827103 None:intergenic
TGGGCTTGGGCCTATTACTT+GGG 0.420201 8_2:-53824805 Msa1255340:CDS
GATATTTCCTTTGAAGTTGA+GGG 0.420965 8_2:-53824769 Msa1255340:CDS
GGAAGATGTGTTTGTGGTGT+AGG 0.426049 8_2:-53825647 Msa1255340:CDS
TGGAGCAATGTTGTTCATAA+AGG 0.432311 8_2:-53825867 Msa1255340:CDS
GGCCCATAAAACATTTCCAT+TGG 0.444837 8_2:+53824878 None:intergenic
ATCTATAAAGCTATCACAAT+AGG 0.446017 8_2:-53824675 Msa1255340:CDS
TACTTCTATGAAGCAAATCA+TGG 0.449321 8_2:-53824476 Msa1255340:three_prime_UTR
TTGGTTATGCAAGGTCAATT+AGG 0.450727 8_2:-53825374 Msa1255340:CDS
CCAATACCAATACAAAGTTC+CGG 0.459728 8_2:+53825542 None:intergenic
ATAGGTAGAGATACTTTGTT+GGG 0.462738 8_2:+53827298 None:intergenic
ACATACTAGACCTTCTGTAT+TGG 0.463685 8_2:+53824501 None:intergenic
TTAAACCTATGTGCATTAGT+AGG 0.465555 8_2:-53825797 Msa1255340:CDS
ATTTGAGTTTGAAACTTGGT+TGG 0.470871 8_2:-53825478 Msa1255340:CDS
ATTTCTTCTGCTTCATCAAG+AGG 0.471846 8_2:-53825581 Msa1255340:CDS
GTCTAATTGGGTGAATATAT+AGG 0.477015 8_2:+53827280 None:intergenic
AATGTAATCGGAGGTTCTTC+CGG 0.477347 8_2:+53825763 None:intergenic
ATATTGTTCATCCTTGGTGC+AGG 0.483894 8_2:-53825710 Msa1255340:CDS
TATAGGTAGAGATACTTTGT+TGG 0.484855 8_2:+53827297 None:intergenic
TGTGTTTGTGGTGTAGGTGT+TGG 0.486277 8_2:-53825641 Msa1255340:CDS
AAATATTTGAGTTTGAAACT+TGG 0.488815 8_2:-53825482 Msa1255340:CDS
ATTTGTTATCATGATGATGA+TGG 0.491802 8_2:+53827143 None:intergenic
CGTATGTTGCGACGATGCTA+AGG 0.499758 8_2:+53824850 None:intergenic
GGTGCAGGTCTAATGGGGTA+TGG 0.502064 8_2:-53825695 Msa1255340:CDS
GTAGCGACGTCCAATGTAAT+CGG 0.502796 8_2:+53825751 None:intergenic
CAAAACGCTACTACAAATGA+AGG 0.504432 8_2:+53825428 None:intergenic
GTAGAGATACTTTGTTGGGT+AGG 0.505276 8_2:+53827302 None:intergenic
CCTTTGAAGTTGAGGGCACA+AGG 0.507181 8_2:-53824762 Msa1255340:CDS
AGATATTTCCTTTGAAGTTG+AGG 0.507195 8_2:-53824770 Msa1255340:CDS
GCTTAAATTTGTTAAAGGAA+AGG 0.508460 8_2:+53827430 None:intergenic
ATCATCATGATAACAAATCA+AGG 0.511062 8_2:-53827138 Msa1255340:exon
ACTATTTGAATTTAATTCCA+AGG 0.512456 8_2:+53824444 None:intergenic
TTACTTGCAACTATTGGAGT+AGG 0.513606 8_2:-53825041 Msa1255340:CDS
GTATACGTTGAGGTCTAATT+GGG 0.515358 8_2:+53827268 None:intergenic
CAAAAGTCTCACCAAGGTGA+AGG 0.519691 8_2:-53825227 Msa1255340:CDS
AATACAAAGTTCCGGTAAAG+AGG 0.522406 8_2:+53825550 None:intergenic
ATGGTTGGAAGATGTGTTTG+TGG 0.525527 8_2:-53825653 Msa1255340:CDS
ATAGAAAGATATCACGTTGA+GGG 0.527433 8_2:-53827211 Msa1255340:five_prime_UTR
ACCAACCACCTTGGTGACTC+AGG 0.530664 8_2:+53825392 None:intergenic
TAAAAGAGACACATAATTGA+CGG 0.530938 8_2:+53827347 None:intergenic
CTTGGTTGGAGATTAATGCT+TGG 0.531239 8_2:-53825464 Msa1255340:CDS
ATAGATTGAAATAAAAGTCA+TGG 0.531568 8_2:+53824692 None:intergenic
AGGGCACAAGGAGCAAGTAT+TGG 0.532018 8_2:-53824750 Msa1255340:CDS
CTTTCCAAACCCCTTCACCT+TGG 0.537035 8_2:+53825216 None:intergenic
AAAAGTCTCACCAAGGTGAA+GGG 0.542978 8_2:-53825226 Msa1255340:CDS
CCTTGTGCCCTCAACTTCAA+AGG 0.544461 8_2:+53824762 None:intergenic
AATCATGGTTGTATAGACCT+TGG 0.545245 8_2:-53824461 Msa1255340:three_prime_UTR
TATAAAGCTATCACAATAGG+TGG 0.548135 8_2:-53824672 Msa1255340:CDS
AGCTTTAGAGGAAATGGAGA+TGG 0.549739 8_2:-53824571 Msa1255340:CDS
AGCAACTATGGCACAAGCAA+AGG 0.549760 8_2:+53827077 None:intergenic
CTTTGCCTTTAGTTTCAGGA+AGG 0.554311 8_2:+53824592 None:intergenic
TGCGACGATGCTAAGGATCA+AGG 0.554761 8_2:+53824857 None:intergenic
TCAGATACTGGTGTTATGAG+TGG 0.559878 8_2:-53825887 Msa1255340:intron
GACCAACGCCTTCTGTACGT+TGG 0.561189 8_2:-53825181 Msa1255340:CDS
TCATGCCACACAAAACAGTA+AGG 0.563201 8_2:+53824311 None:intergenic
AGAAGCAGAACTTCGTCTCA+AGG 0.568665 8_2:-53825309 Msa1255340:CDS
TCCATTGGATTTATCTACCA+CGG 0.569730 8_2:+53824893 None:intergenic
AAAAGAGACACATAATTGAC+GGG 0.570962 8_2:+53827348 None:intergenic
GGAAGAACCTCCGATTACAT+TGG 0.573049 8_2:-53825761 Msa1255340:CDS
GCCTGAGTCACCAAGGTGGT+TGG 0.573571 8_2:-53825393 Msa1255340:CDS
TTAGTAGGATCCTTAACAGC+CGG 0.586504 8_2:-53825782 Msa1255340:CDS
AATCTAGTGTATCTTTAACA+TGG 0.593595 8_2:-53824354 Msa1255340:three_prime_UTR
ACACAACAAGAGGTTCTAGC+AGG 0.599568 8_2:-53825824 Msa1255340:CDS
AGAAATGGATCCAATACAGA+AGG 0.599938 8_2:-53824511 Msa1255340:CDS
CCAAGGTGGTTGGTTATGCA+AGG 0.600557 8_2:-53825383 Msa1255340:CDS
ACCGTGGTAGATAAATCCAA+TGG 0.600568 8_2:-53824894 Msa1255340:CDS
CCTTGCATAACCAACCACCT+TGG 0.601505 8_2:+53825383 None:intergenic
ACCAAGGATGAACAATATTG+AGG 0.606197 8_2:+53825715 None:intergenic
ATTAACATCCAACGTACAGA+AGG 0.606833 8_2:+53825173 None:intergenic
TCCTTGGTGCAGGTCTAATG+GGG 0.608348 8_2:-53825700 Msa1255340:CDS
AGGATCCTACTAATGCACAT+AGG 0.612414 8_2:+53825792 None:intergenic
AAAGTCTCACCAAGGTGAAG+GGG 0.615900 8_2:-53825225 Msa1255340:CDS
AATCAGTGACACACAACAAG+AGG 0.616657 8_2:-53825834 Msa1255340:CDS
TAGAAAGATATCACGTTGAG+GGG 0.619442 8_2:-53827210 Msa1255340:five_prime_UTR
CGTACCATAACCAGAAACAA+TGG 0.627128 8_2:+53827044 None:intergenic
TGGATGTTAATTGCTGCGGT+CGG 0.629602 8_2:-53825161 Msa1255340:CDS
CATAGAAAGATATCACGTTG+AGG 0.639136 8_2:-53827212 Msa1255340:five_prime_UTR
TAACAATGCCTGAGTCACCA+AGG 0.652487 8_2:-53825400 Msa1255340:CDS
ATCCAACGTACAGAAGGCGT+TGG 0.670561 8_2:+53825179 None:intergenic
ATTGGGTCTTAGCTTGACCG+TGG 0.672956 8_2:-53824910 Msa1255340:CDS
GCGACGTCCAATGTAATCGG+AGG 0.683787 8_2:+53825754 None:intergenic
ACGTTGGATGTTAATTGCTG+CGG 0.698864 8_2:-53825165 Msa1255340:CDS
ACCCCATTAGACCTGCACCA+AGG 0.701724 8_2:+53825699 None:intergenic
TTACCTCAAAAGTCTCACCA+AGG 0.718107 8_2:-53825233 Msa1255340:CDS
TTATATAAGAGTATACGTTG+AGG 0.724727 8_2:+53827258 None:intergenic
CAATGCCTGAGTCACCAAGG+TGG 0.763732 8_2:-53825397 Msa1255340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAGTAAATAAAATTAAAAG+TGG + chr8_2:53824725-53824744 None:intergenic 10.0%
!! CAAAAGAAAAAAAAAATTAT+TGG + chr8_2:53824773-53824792 None:intergenic 10.0%
!!! TTATATATCAAACTATTTTT+TGG - chr8_2:53826211-53826230 Msa1255340:intron 10.0%
!!! TATATATCAAACTATTTTTT+GGG - chr8_2:53826212-53826231 Msa1255340:intron 10.0%
!!! ATTATAAACGAAAAACTTTT+AGG - chr8_2:53824852-53824871 Msa1255340:CDS 15.0%
!!! CAAGTAAAAAAACTTTTTTT+AGG + chr8_2:53824931-53824950 None:intergenic 15.0%
!! AAATGAAAAAAATTGAATAG+AGG - chr8_2:53825099-53825118 Msa1255340:CDS 15.0%
!!! AATAAATTAACTTGAAGAAA+AGG + chr8_2:53825143-53825162 None:intergenic 15.0%
!!! TTCAAGTTAATTTATTTTGA+GGG - chr8_2:53825147-53825166 Msa1255340:CDS 15.0%
!! ATTTCATTCATAAAAAAAGA+AGG - chr8_2:53825208-53825227 Msa1255340:CDS 15.0%
!!! AATTTGAGTTTTTTATTTTG+AGG - chr8_2:53825250-53825269 Msa1255340:CDS 15.0%
!!! ATTTGAGTTTTTTATTTTGA+GGG - chr8_2:53825251-53825270 Msa1255340:CDS 15.0%
!! TTTGAATAAGCAAAATATAT+TGG + chr8_2:53825402-53825421 None:intergenic 15.0%
!!! AAGAACAAATTTTTTGTTTT+CGG - chr8_2:53825469-53825488 Msa1255340:CDS 15.0%
!! AAATTGCATTGAAAATTAAA+TGG + chr8_2:53825587-53825606 None:intergenic 15.0%
!! TATGTATATTATTCTCAATA+AGG - chr8_2:53825641-53825660 Msa1255340:CDS 15.0%
!!! CTTAAATTTGTTAAAGGAAA+GGG + chr8_2:53824290-53824309 None:intergenic 20.0%
!!! ATTAGGCTTAAATTTGTTAA+AGG + chr8_2:53824296-53824315 None:intergenic 20.0%
!!! TTTTCGTTTATAATTGTGAT+CGG + chr8_2:53824846-53824865 None:intergenic 20.0%
!!! TTTTTACTTGTATTAATGAC+CGG - chr8_2:53824941-53824960 Msa1255340:CDS 20.0%
!! TGAGTCAAAAAAAATATTTG+TGG + chr8_2:53824997-53825016 None:intergenic 20.0%
!!! CTTCAAGTTAATTTATTTTG+AGG - chr8_2:53825146-53825165 Msa1255340:CDS 20.0%
!!! CACTAAACTTTTTTTTTTGA+AGG + chr8_2:53825298-53825317 None:intergenic 20.0%
!! AAAAAAAAAAGTTTAGTGAC+CGG - chr8_2:53825300-53825319 Msa1255340:CDS 20.0%
!! TATTCTCAATAAGGATAATT+TGG - chr8_2:53825650-53825669 Msa1255340:CDS 20.0%
!!! AAATATTTGAGTTTGAAACT+TGG - chr8_2:53826236-53826255 Msa1255340:intron 20.0%
!!! TATGTTGCTTTCTTTAATAT+TGG - chr8_2:53826893-53826912 Msa1255340:intron 20.0%
!!! ATGTTGCTTTCTTTAATATT+GGG - chr8_2:53826894-53826913 Msa1255340:intron 20.0%
!! ATAGATTGAAATAAAAGTCA+TGG + chr8_2:53827029-53827048 None:intergenic 20.0%
!!! ATTTTTACCACTTGATTTTT+TGG + chr8_2:53827179-53827198 None:intergenic 20.0%
!! ACTATTTGAATTTAATTCCA+AGG + chr8_2:53827277-53827296 None:intergenic 20.0%
!!! GCTTAAATTTGTTAAAGGAA+AGG + chr8_2:53824291-53824310 None:intergenic 25.0%
! CTCAAGAGTGAAATTTAATT+AGG + chr8_2:53824313-53824332 None:intergenic 25.0%
! TAAAAGAGACACATAATTGA+CGG + chr8_2:53824374-53824393 None:intergenic 25.0%
!!! TATGTGTCTCTTTTAGTTTT+CGG - chr8_2:53824379-53824398 Msa1255340:three_prime_UTR 25.0%
!! TTATATAAGAGTATACGTTG+AGG + chr8_2:53824463-53824482 None:intergenic 25.0%
!! ACTCTTATATAAACACGTTT+TGG - chr8_2:53824471-53824490 Msa1255340:three_prime_UTR 25.0%
!!! ATTTGTTATCATGATGATGA+TGG + chr8_2:53824578-53824597 None:intergenic 25.0%
! ATCATCATGATAACAAATCA+AGG - chr8_2:53824580-53824599 Msa1255340:CDS 25.0%
! CATTTAACAATTAGTGTATG+TGG - chr8_2:53824877-53824896 Msa1255340:CDS 25.0%
!!! GTTTTTGTTTCTGATTTTTG+TGG + chr8_2:53825022-53825041 None:intergenic 25.0%
! ACAAAAACATGAATGTAACT+AGG - chr8_2:53825034-53825053 Msa1255340:CDS 25.0%
! GTGGTTAATTGAACTTTATA+TGG - chr8_2:53825069-53825088 Msa1255340:CDS 25.0%
!!! ACTTTTTTTTTTGAAGGAAC+CGG + chr8_2:53825292-53825311 None:intergenic 25.0%
! AATATGCACTTAAACAACAA+GGG + chr8_2:53825336-53825355 None:intergenic 25.0%
!!! TCAAACGTGAAACTTATTTT+GGG + chr8_2:53825533-53825552 None:intergenic 25.0%
!! TTCAAACGTGAAACTTATTT+TGG + chr8_2:53825534-53825553 None:intergenic 25.0%
! AATACGATGCTTATTTAAGA+CGG - chr8_2:53825735-53825754 Msa1255340:CDS 25.0%
! ACATGATTAATTTCAGATAC+TGG - chr8_2:53825819-53825838 Msa1255340:CDS 25.0%
! TTGTTCATAAAGGAAGATTT+GGG - chr8_2:53825861-53825880 Msa1255340:CDS 25.0%
!!! AACTTGCAATAGAACTTTTT+TGG + chr8_2:53826375-53826394 None:intergenic 25.0%
!!! TTGTTTTTACTTGACAAACT+TGG - chr8_2:53826731-53826750 Msa1255340:intron 25.0%
!! AATCCAATGGAAATGTTTTA+TGG - chr8_2:53826837-53826856 Msa1255340:intron 25.0%
!! ATCCAATGGAAATGTTTTAT+GGG - chr8_2:53826838-53826857 Msa1255340:intron 25.0%
! ATCTATAAAGCTATCACAAT+AGG - chr8_2:53827043-53827062 Msa1255340:intron 25.0%
!! GTTTTTACCAAAAAATCAAG+TGG - chr8_2:53827169-53827188 Msa1255340:five_prime_UTR 25.0%
! AAAATCAAGTGGTAAAAATG+TGG - chr8_2:53827180-53827199 Msa1255340:five_prime_UTR 25.0%
! TAAAAATGTGGCAATAGAAA+TGG - chr8_2:53827192-53827211 Msa1255340:five_prime_UTR 25.0%
!! CAATTCAACATTTTCTAATG+TGG + chr8_2:53827328-53827347 None:intergenic 25.0%
! AATCTAGTGTATCTTTAACA+TGG - chr8_2:53827364-53827383 Msa1255340:five_prime_UTR 25.0%
AAAAGAGACACATAATTGAC+GGG + chr8_2:53824373-53824392 None:intergenic 30.0%
ATAGGTAGAGATACTTTGTT+GGG + chr8_2:53824423-53824442 None:intergenic 30.0%
TATAGGTAGAGATACTTTGT+TGG + chr8_2:53824424-53824443 None:intergenic 30.0%
GTCTAATTGGGTGAATATAT+AGG + chr8_2:53824441-53824460 None:intergenic 30.0%
ATAGAAAGATATCACGTTGA+GGG - chr8_2:53824507-53824526 Msa1255340:CDS 30.0%
!! ATCATGATGATGATGGTTAA+AGG + chr8_2:53824571-53824590 None:intergenic 30.0%
!!! AACTAGGTATTGTTTTTACG+TGG - chr8_2:53825050-53825069 Msa1255340:CDS 30.0%
ATATGCACTTAAACAACAAG+GGG + chr8_2:53825335-53825354 None:intergenic 30.0%
CAATATGCACTTAAACAACA+AGG + chr8_2:53825337-53825356 None:intergenic 30.0%
! ATACGATGCTTATTTAAGAC+GGG - chr8_2:53825736-53825755 Msa1255340:CDS 30.0%
TCACAAATAAAACACAGACA+TGG - chr8_2:53825766-53825785 Msa1255340:CDS 30.0%
GTTGTTCATAAAGGAAGATT+TGG - chr8_2:53825860-53825879 Msa1255340:CDS 30.0%
TTAAACCTATGTGCATTAGT+AGG - chr8_2:53825921-53825940 Msa1255340:intron 30.0%
GAAATTTCAGCTGAATAAAC+TGG + chr8_2:53826122-53826141 None:intergenic 30.0%
! ATTGGTATTGGAATCTTGTT+AGG - chr8_2:53826188-53826207 Msa1255340:intron 30.0%
! ATTTGAGTTTGAAACTTGGT+TGG - chr8_2:53826240-53826259 Msa1255340:intron 30.0%
!!! CCAGCTTTTTTGAAAATTCT+TGG + chr8_2:53826635-53826654 None:intergenic 30.0%
! CCAAGAATTTTCAAAAAAGC+TGG - chr8_2:53826632-53826651 Msa1255340:intron 30.0%
! AAGCTTTTACTTGCAACTAT+TGG - chr8_2:53826671-53826690 Msa1255340:intron 30.0%
CTTTCTTTAATATTGGGCTT+GGG - chr8_2:53826900-53826919 Msa1255340:intron 30.0%
GAACTATAAACCCAAGTAAT+AGG + chr8_2:53826926-53826945 None:intergenic 30.0%
!! AGATATTTCCTTTGAAGTTG+AGG - chr8_2:53826948-53826967 Msa1255340:intron 30.0%
!! GATATTTCCTTTGAAGTTGA+GGG - chr8_2:53826949-53826968 Msa1255340:intron 30.0%
TATAAAGCTATCACAATAGG+TGG - chr8_2:53827046-53827065 Msa1255340:intron 30.0%
! TTTTTCCTTCCTGAAACTAA+AGG - chr8_2:53827121-53827140 Msa1255340:CDS 30.0%
TACTTCTATGAAGCAAATCA+TGG - chr8_2:53827242-53827261 Msa1255340:five_prime_UTR 30.0%
GTATACGTTGAGGTCTAATT+GGG + chr8_2:53824453-53824472 None:intergenic 35.0%
AGTATACGTTGAGGTCTAAT+TGG + chr8_2:53824454-53824473 None:intergenic 35.0%
CATAGAAAGATATCACGTTG+AGG - chr8_2:53824506-53824525 Msa1255340:CDS 35.0%
TAGAAAGATATCACGTTGAG+GGG - chr8_2:53824508-53824527 Msa1255340:CDS 35.0%
! ATTTGTTGAACGTGTTCGTT+TGG + chr8_2:53824618-53824637 None:intergenic 35.0%
TCGTTTATAATTGTGATCGG+AGG + chr8_2:53824843-53824862 None:intergenic 35.0%
TCGATGAGTAAGTAAGGTAT+GGG + chr8_2:53824907-53824926 None:intergenic 35.0%
TTCGATGAGTAAGTAAGGTA+TGG + chr8_2:53824908-53824927 None:intergenic 35.0%
TTAGGTTCGATGAGTAAGTA+AGG + chr8_2:53824913-53824932 None:intergenic 35.0%
TTACTTGTATTAATGACCGG+AGG - chr8_2:53824944-53824963 Msa1255340:CDS 35.0%
! TTTTGTCTTGAGTAATCCTC+CGG + chr8_2:53824963-53824982 None:intergenic 35.0%
! ATGTTACTTGATCCCACTTA+GGG + chr8_2:53825499-53825518 None:intergenic 35.0%
! TATGTTACTTGATCCCACTT+AGG + chr8_2:53825500-53825519 None:intergenic 35.0%
!!! GAAACTTATTTTGGGAAGGA+GGG + chr8_2:53825525-53825544 None:intergenic 35.0%
!!! TGAAACTTATTTTGGGAAGG+AGG + chr8_2:53825526-53825545 None:intergenic 35.0%
!!! ACGTGAAACTTATTTTGGGA+AGG + chr8_2:53825529-53825548 None:intergenic 35.0%
! TACGATGCTTATTTAAGACG+GGG - chr8_2:53825737-53825756 Msa1255340:CDS 35.0%
TGGAGCAATGTTGTTCATAA+AGG - chr8_2:53825851-53825870 Msa1255340:CDS 35.0%
ACCAAGGATGAACAATATTG+AGG + chr8_2:53826006-53826025 None:intergenic 35.0%
! TCCAAACTACGCGATTTTAA+TGG - chr8_2:53826046-53826065 Msa1255340:intron 35.0%
ACCATTAAAATCGCGTAGTT+TGG + chr8_2:53826050-53826069 None:intergenic 35.0%
!! AACTACGCGATTTTAATGGT+TGG - chr8_2:53826050-53826069 Msa1255340:intron 35.0%
ATTTCTTCTGCTTCATCAAG+AGG - chr8_2:53826137-53826156 Msa1255340:intron 35.0%
AGGATTCTTAACCTCTTTAC+CGG - chr8_2:53826157-53826176 Msa1255340:intron 35.0%
AATACAAAGTTCCGGTAAAG+AGG + chr8_2:53826171-53826190 None:intergenic 35.0%
TCTTTACCGGAACTTTGTAT+TGG - chr8_2:53826170-53826189 Msa1255340:intron 35.0%
CCAATACCAATACAAAGTTC+CGG + chr8_2:53826179-53826198 None:intergenic 35.0%
CAAAACGCTACTACAAATGA+AGG + chr8_2:53826293-53826312 None:intergenic 35.0%
TTGGTTATGCAAGGTCAATT+AGG - chr8_2:53826344-53826363 Msa1255340:intron 35.0%
AAGGATATAAAAATCGCTGC+TGG - chr8_2:53826428-53826447 Msa1255340:intron 35.0%
ATTAACATCCAACGTACAGA+AGG + chr8_2:53826548-53826567 None:intergenic 35.0%
TTACTTGCAACTATTGGAGT+AGG - chr8_2:53826677-53826696 Msa1255340:intron 35.0%
! AGACTTTTGCAAATTAGCAC+TGG - chr8_2:53826761-53826780 Msa1255340:intron 35.0%
ATTATTGGGCTTACGCTATT+GGG - chr8_2:53826791-53826810 Msa1255340:intron 35.0%
TCCATTGGATTTATCTACCA+CGG + chr8_2:53826828-53826847 None:intergenic 35.0%
GCTTTCTTTAATATTGGGCT+TGG - chr8_2:53826899-53826918 Msa1255340:intron 35.0%
!!! GGAAGTTTTTTCATGTTTGC+TGG - chr8_2:53827067-53827086 Msa1255340:CDS 35.0%
!!! CTGGTATATCTGTTTTAGCT+TGG - chr8_2:53827086-53827105 Msa1255340:CDS 35.0%
! AAAGCTTTGCCTTTAGTTTC+AGG + chr8_2:53827133-53827152 None:intergenic 35.0%
! AACTAAAGGCAAAGCTTTAG+AGG - chr8_2:53827135-53827154 Msa1255340:CDS 35.0%
AGAAATGGATCCAATACAGA+AGG - chr8_2:53827207-53827226 Msa1255340:five_prime_UTR 35.0%
ACATACTAGACCTTCTGTAT+TGG + chr8_2:53827220-53827239 None:intergenic 35.0%
AATCATGGTTGTATAGACCT+TGG - chr8_2:53827257-53827276 Msa1255340:five_prime_UTR 35.0%
! TTTTGCCTTACTGTTTTGTG+TGG - chr8_2:53827402-53827421 Msa1255340:five_prime_UTR 35.0%
GTAGAGATACTTTGTTGGGT+AGG + chr8_2:53824419-53824438 None:intergenic 40.0%
TTGTGCCATAGTTGCTTCAA+TGG - chr8_2:53824648-53824667 Msa1255340:CDS 40.0%
TCAATGGTGTCCATTGTTTC+TGG - chr8_2:53824664-53824683 Msa1255340:CDS 40.0%
!! GTGTCCATTGTTTCTGGTTA+TGG - chr8_2:53824670-53824689 Msa1255340:CDS 40.0%
CGTACCATAACCAGAAACAA+TGG + chr8_2:53824677-53824696 None:intergenic 40.0%
CGATGAGTAAGTAAGGTATG+GGG + chr8_2:53824906-53824925 None:intergenic 40.0%
! AGGGATTCAAGTTTAGTGAC+CGG - chr8_2:53825270-53825289 Msa1255340:CDS 40.0%
CAACAAGGGGATTAAGAAAC+CGG + chr8_2:53825322-53825341 None:intergenic 40.0%
! TGTTTTCGGTTTTCCCTAAG+TGG - chr8_2:53825483-53825502 Msa1255340:CDS 40.0%
! GTTTTCGGTTTTCCCTAAGT+GGG - chr8_2:53825484-53825503 Msa1255340:CDS 40.0%
!! TCAGATACTGGTGTTATGAG+TGG - chr8_2:53825831-53825850 Msa1255340:CDS 40.0%
AATCAGTGACACACAACAAG+AGG - chr8_2:53825884-53825903 Msa1255340:CDS 40.0%
AGGATCCTACTAATGCACAT+AGG + chr8_2:53825929-53825948 None:intergenic 40.0%
TTAGTAGGATCCTTAACAGC+CGG - chr8_2:53825936-53825955 Msa1255340:intron 40.0%
AATGTAATCGGAGGTTCTTC+CGG + chr8_2:53825958-53825977 None:intergenic 40.0%
GCCTCAATATTGTTCATCCT+TGG - chr8_2:53826002-53826021 Msa1255340:intron 40.0%
! ATATTGTTCATCCTTGGTGC+AGG - chr8_2:53826008-53826027 Msa1255340:intron 40.0%
ATGGTTGGAAGATGTGTTTG+TGG - chr8_2:53826065-53826084 Msa1255340:intron 40.0%
! CCGGAACTTTGTATTGGTAT+TGG - chr8_2:53826176-53826195 Msa1255340:intron 40.0%
CTTGGTTGGAGATTAATGCT+TGG - chr8_2:53826254-53826273 Msa1255340:intron 40.0%
TTACCTCAAAAGTCTCACCA+AGG - chr8_2:53826485-53826504 Msa1255340:intron 40.0%
AAAAGTCTCACCAAGGTGAA+GGG - chr8_2:53826492-53826511 Msa1255340:intron 40.0%
ACGTTGGATGTTAATTGCTG+CGG - chr8_2:53826553-53826572 Msa1255340:intron 40.0%
!!! CATTTTTTCGAACATGCGAC+TGG - chr8_2:53826584-53826603 Msa1255340:intron 40.0%
!! CTTTTGCAAATTAGCACTGG+AGG - chr8_2:53826764-53826783 Msa1255340:intron 40.0%
! AGCACTGGAGGAATGATTAT+TGG - chr8_2:53826776-53826795 Msa1255340:intron 40.0%
GCACTGGAGGAATGATTATT+GGG - chr8_2:53826777-53826796 Msa1255340:intron 40.0%
GATTATTGGGCTTACGCTAT+TGG - chr8_2:53826790-53826809 Msa1255340:intron 40.0%
ACCGTGGTAGATAAATCCAA+TGG - chr8_2:53826824-53826843 Msa1255340:intron 40.0%
GGCCCATAAAACATTTCCAT+TGG + chr8_2:53826843-53826862 None:intergenic 40.0%
CATGGAAACAACAGCATTCA+TGG + chr8_2:53827011-53827030 None:intergenic 40.0%
! CTTTGCCTTTAGTTTCAGGA+AGG + chr8_2:53827129-53827148 None:intergenic 40.0%
!! AGGCAAAGCTTTAGAGGAAA+TGG - chr8_2:53827141-53827160 Msa1255340:exon 40.0%
!! AGCTTTAGAGGAAATGGAGA+TGG - chr8_2:53827147-53827166 Msa1255340:exon 40.0%
TCATGCCACACAAAACAGTA+AGG + chr8_2:53827410-53827429 None:intergenic 40.0%
AGCAACTATGGCACAAGCAA+AGG + chr8_2:53824644-53824663 None:intergenic 45.0%
GGACACCATTGAAGCAACTA+TGG + chr8_2:53824656-53824675 None:intergenic 45.0%
! ACACAACAAGAGGTTCTAGC+AGG - chr8_2:53825894-53825913 Msa1255340:intron 45.0%
GGAAGAACCTCCGATTACAT+TGG - chr8_2:53825957-53825976 Msa1255340:intron 45.0%
GTAGCGACGTCCAATGTAAT+CGG + chr8_2:53825970-53825989 None:intergenic 45.0%
! ATCCTTGGTGCAGGTCTAAT+GGG - chr8_2:53826017-53826036 Msa1255340:intron 45.0%
GGAAGATGTGTTTGTGGTGT+AGG - chr8_2:53826071-53826090 Msa1255340:intron 45.0%
TGTGTTTGTGGTGTAGGTGT+TGG - chr8_2:53826077-53826096 Msa1255340:intron 45.0%
TAACAATGCCTGAGTCACCA+AGG - chr8_2:53826318-53826337 Msa1255340:intron 45.0%
AGAAGCAGAACTTCGTCTCA+AGG - chr8_2:53826409-53826428 Msa1255340:intron 45.0%
! TCACCTTGGTGAGACTTTTG+AGG + chr8_2:53826491-53826510 None:intergenic 45.0%
CAAAAGTCTCACCAAGGTGA+AGG - chr8_2:53826491-53826510 Msa1255340:intron 45.0%
AAAGTCTCACCAAGGTGAAG+GGG - chr8_2:53826493-53826512 Msa1255340:intron 45.0%
TGGATGTTAATTGCTGCGGT+CGG - chr8_2:53826557-53826576 Msa1255340:intron 45.0%
! CATCCTTGGTGCAGGTCTAA+TGG - chr8_2:53826016-53826035 Msa1255340:intron 50.0%
! TCCTTGGTGCAGGTCTAATG+GGG - chr8_2:53826018-53826037 Msa1255340:intron 50.0%
CCTTGCATAACCAACCACCT+TGG + chr8_2:53826338-53826357 None:intergenic 50.0%
! CCAAGGTGGTTGGTTATGCA+AGG - chr8_2:53826335-53826354 Msa1255340:intron 50.0%
CTTTCCAAACCCCTTCACCT+TGG + chr8_2:53826505-53826524 None:intergenic 50.0%
! ATCCAACGTACAGAAGGCGT+TGG + chr8_2:53826542-53826561 None:intergenic 50.0%
! ATTGGGTCTTAGCTTGACCG+TGG - chr8_2:53826808-53826827 Msa1255340:intron 50.0%
TGCGACGATGCTAAGGATCA+AGG + chr8_2:53826864-53826883 None:intergenic 50.0%
CGTATGTTGCGACGATGCTA+AGG + chr8_2:53826871-53826890 None:intergenic 50.0%
TTGGGCTTGGGCCTATTACT+TGG - chr8_2:53826912-53826931 Msa1255340:intron 50.0%
TGGGCTTGGGCCTATTACTT+GGG - chr8_2:53826913-53826932 Msa1255340:intron 50.0%
CCTTGTGCCCTCAACTTCAA+AGG + chr8_2:53826959-53826978 None:intergenic 50.0%
!! CCTTTGAAGTTGAGGGCACA+AGG - chr8_2:53826956-53826975 Msa1255340:intron 50.0%
AGGGCACAAGGAGCAAGTAT+TGG - chr8_2:53826968-53826987 Msa1255340:intron 50.0%
GGAGGTTCTTCCGGCTGTTA+AGG + chr8_2:53825949-53825968 None:intergenic 55.0%
GCGACGTCCAATGTAATCGG+AGG + chr8_2:53825967-53825986 None:intergenic 55.0%
ACCCCATTAGACCTGCACCA+AGG + chr8_2:53826022-53826041 None:intergenic 55.0%
GGTGCAGGTCTAATGGGGTA+TGG - chr8_2:53826023-53826042 Msa1255340:intron 55.0%
CAATGCCTGAGTCACCAAGG+TGG - chr8_2:53826321-53826340 Msa1255340:intron 55.0%
! ACCAACCACCTTGGTGACTC+AGG + chr8_2:53826329-53826348 None:intergenic 55.0%
CTCACCAAGGTGAAGGGGTT+TGG - chr8_2:53826498-53826517 Msa1255340:intron 55.0%
GACCAACGCCTTCTGTACGT+TGG - chr8_2:53826537-53826556 Msa1255340:intron 55.0%
GCCTGAGTCACCAAGGTGGT+TGG - chr8_2:53826325-53826344 Msa1255340:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 53824286 53827454 53824286 ID=Msa1255340;Name=Msa1255340
chr8_2 mRNA 53824286 53827454 53824286 ID=Msa1255340-mRNA-1;Parent=Msa1255340;Name=Msa1255340-mRNA-1;_AED=0.00;_eAED=0.00;_QI=300|1|1|1|1|1|2|220|501
chr8_2 exon 53824286 53825905 53824286 ID=Msa1255340-mRNA-1:exon:16695;Parent=Msa1255340-mRNA-1
chr8_2 exon 53827049 53827454 53827049 ID=Msa1255340-mRNA-1:exon:16694;Parent=Msa1255340-mRNA-1
chr8_2 five_prime_UTR 53827155 53827454 53827155 ID=Msa1255340-mRNA-1:five_prime_utr;Parent=Msa1255340-mRNA-1
chr8_2 CDS 53827049 53827154 53827049 ID=Msa1255340-mRNA-1:cds;Parent=Msa1255340-mRNA-1
chr8_2 CDS 53824506 53825905 53824506 ID=Msa1255340-mRNA-1:cds;Parent=Msa1255340-mRNA-1
chr8_2 three_prime_UTR 53824286 53824505 53824286 ID=Msa1255340-mRNA-1:three_prime_utr;Parent=Msa1255340-mRNA-1
Gene Sequence

>Msa1255340

ATGATAACAAATCAAGGTGATAAAGAAGACCAAACGAACACGTTCAACAAATATGCCTTTGCTTGTGCCATAGTTGCTTCAATGGTGTCCATTGTTTCTGGTTATGATACTGGTGTTATGAGTGGAGCAATGTTGTTCATAAAGGAAGATTTGGGAATCAGTGACACACAACAAGAGGTTCTAGCAGGAATCTTAAACCTATGTGCATTAGTAGGATCCTTAACAGCCGGAAGAACCTCCGATTACATTGGACGTCGCTACACAATCTTCTTAGCCTCAATATTGTTCATCCTTGGTGCAGGTCTAATGGGGTATGGTCCAAACTACGCGATTTTAATGGTTGGAAGATGTGTTTGTGGTGTAGGTGTTGGCTTTGCTCTTATGATAGCACCAGTTTATTCAGCTGAAATTTCTTCTGCTTCATCAAGAGGATTCTTAACCTCTTTACCGGAACTTTGTATTGGTATTGGAATCTTGTTAGGTTATATATCAAACTATTTTTTGGGAAAATATTTGAGTTTGAAACTTGGTTGGAGATTAATGCTTGGTATTGCAGCTTTGCCTTCATTTGTAGTAGCGTTTTGTATTTTAACAATGCCTGAGTCACCAAGGTGGTTGGTTATGCAAGGTCAATTAGGAAAAGCCAAAAAAGTTCTATTGCAAGTTTCAAACACAACGCAAGAAGCAGAACTTCGTCTCAAGGATATAAAAATCGCTGCTGGTTTAGACGAAAACTGCAACGATGAAATTGTGAAGTTACCTCAAAAGTCTCACCAAGGTGAAGGGGTTTGGAAAGAGTTGATTTTAAGACCAACGCCTTCTGTACGTTGGATGTTAATTGCTGCGGTCGGAATTCATTTTTTCGAACATGCGACTGGAATAGAAGCTGTTATGTTATATAGTCCAAGAATTTTCAAAAAAGCTGGTGTTACAAGTAAAGAAAAGCTTTTACTTGCAACTATTGGAGTAGGTTTAACAAAAATTGTTTTTCTTTTAATTGCTTTGTTTTTACTTGACAAACTTGGTAGAAGAAGACTTTTGCAAATTAGCACTGGAGGAATGATTATTGGGCTTACGCTATTGGGTCTTAGCTTGACCGTGGTAGATAAATCCAATGGAAATGTTTTATGGGCCTTGATCCTTAGCATCGTCGCAACATACGCTTATGTTGCTTTCTTTAATATTGGGCTTGGGCCTATTACTTGGGTTTATAGTTCAGAGATATTTCCTTTGAAGTTGAGGGCACAAGGAGCAAGTATTGGAGTTGCTGTGAATAGAACCATGAATGCTGTTGTTTCCATGACTTTTATTTCAATCTATAAAGCTATCACAATAGGTGGAAGTTTTTTCATGTTTGCTGGTATATCTGTTTTAGCTTGGTTGTTTTTCTACTTTTTCCTTCCTGAAACTAAAGGCAAAGCTTTAGAGGAAATGGAGATGGTTTTTACCAAAAAATCAAGTGGTAAAAATGTGGCAATAGAAATGGATCCAATACAGAAGGTCTAG
Protein sequence

>Msa1255340

MITNQGDKEDQTNTFNKYAFACAIVASMVSIVSGYDTGVMSGAMLFIKEDLGISDTQQEVLAGILNLCALVGSLTAGRTSDYIGRRYTIFLASILFILGAGLMGYGPNYAILMVGRCVCGVGVGFALMIAPVYSAEISSASSRGFLTSLPELCIGIGILLGYISNYFLGKYLSLKLGWRLMLGIAALPSFVVAFCILTMPESPRWLVMQGQLGKAKKVLLQVSNTTQEAELRLKDIKIAAGLDENCNDEIVKLPQKSHQGEGVWKELILRPTPSVRWMLIAAVGIHFFEHATGIEAVMLYSPRIFKKAGVTSKEKLLLATIGVGLTKIVFLLIALFLLDKLGRRRLLQISTGGMIIGLTLLGLSLTVVDKSNGNVLWALILSIVATYAYVAFFNIGLGPITWVYSSEIFPLKLRAQGASIGVAVNRTMNAVVSMTFISIYKAITIGGSFFMFAGISVLAWLFFYFFLPETKGKALEEMEMVFTKKSSGKNVAIEMDPIQKV*