Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0012170 | Msa1295990 | 0.809691 | 1.669814e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 109 sgRNAs with CRISPR-Local
Find 283 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAATATATTTATTTAAAT+TGG | 0.163231 | 8_3:-54531678 | Msa1295990:three_prime_UTR |
| TATACCATCTTATACATTAA+TGG | 0.204934 | 8_3:+54532172 | None:intergenic |
| CACTCTACAGGGGCTATTTC+GGG | 0.222409 | 8_3:-54536523 | Msa1295990:CDS |
| TCACTCTACAGGGGCTATTT+CGG | 0.240025 | 8_3:-54536524 | Msa1295990:CDS |
| AAGTGATATACCTGATTATA+TGG | 0.249343 | 8_3:-54531745 | Msa1295990:three_prime_UTR |
| TTGGGTTGGCTTAGTGGTAT+TGG | 0.279102 | 8_3:-54531879 | Msa1295990:three_prime_UTR |
| ATTCTCACCGGTGTCAATTT+AGG | 0.291595 | 8_3:-54531814 | Msa1295990:three_prime_UTR |
| GCAGCTTTCAAATTGGTAAT+AGG | 0.291646 | 8_3:-54531920 | Msa1295990:three_prime_UTR |
| GCTTAGAGTTATCTGAAAAT+TGG | 0.294451 | 8_3:-54533995 | Msa1295990:three_prime_UTR |
| GTCGCAGACTTTGATTGCTT+TGG | 0.305875 | 8_3:+54533949 | None:intergenic |
| GTTAAATAGATGCCACTAGA+AGG | 0.318756 | 8_3:-54532136 | Msa1295990:three_prime_UTR |
| CGAATTTGTTGTCTGAGCTT+GGG | 0.322964 | 8_3:-54533873 | Msa1295990:three_prime_UTR |
| TAGTGGTATTGGCTTGGACC+TGG | 0.325052 | 8_3:-54531868 | Msa1295990:three_prime_UTR |
| ATCTGCTTCAGATTGCTAAA+AGG | 0.345099 | 8_3:+54535980 | None:intergenic |
| TTCGGGTGCACAAGAGTGTT+TGG | 0.353912 | 8_3:-54536506 | Msa1295990:CDS |
| AGCATGTTTCCACGTACTTT+GGG | 0.355918 | 8_3:+54536387 | None:intergenic |
| GGTAAGACTAAGACTCAAAA+TGG | 0.356579 | 8_3:-54532391 | Msa1295990:three_prime_UTR |
| ACCCACTTGGGTTGGCTTAG+TGG | 0.361608 | 8_3:-54531885 | Msa1295990:three_prime_UTR |
| TTATGCGGCAGCTTTCAAAT+TGG | 0.368696 | 8_3:-54531927 | Msa1295990:three_prime_UTR |
| CATTTAGTTTCTGTTTAGAT+TGG | 0.371875 | 8_3:+54533836 | None:intergenic |
| GTTTGTTGTAAAATTGACTT+TGG | 0.377955 | 8_3:-54531962 | Msa1295990:three_prime_UTR |
| AACTATAGAAATCAAAATAA+AGG | 0.387328 | 8_3:-54535947 | Msa1295990:intron |
| GAGCATGTTTCCACGTACTT+TGG | 0.387967 | 8_3:+54536386 | None:intergenic |
| TTGGCTTAGTGGTATTGGCT+TGG | 0.388657 | 8_3:-54531874 | Msa1295990:three_prime_UTR |
| ACGAATTTGTTGTCTGAGCT+TGG | 0.390870 | 8_3:-54533874 | Msa1295990:three_prime_UTR |
| CAAGAGTGTTTGGAGAGGTT+GGG | 0.399103 | 8_3:-54536496 | Msa1295990:CDS |
| ATCCAAGTTTCAATTACATA+AGG | 0.413002 | 8_3:+54535389 | None:intergenic |
| TATCTAAATCCCATATAATC+AGG | 0.425612 | 8_3:+54531735 | None:intergenic |
| CATAATCTGAATCACTCTAC+AGG | 0.431353 | 8_3:-54536535 | Msa1295990:CDS |
| GACTTTGATTGCTTTGGAGT+TGG | 0.431608 | 8_3:+54533955 | None:intergenic |
| GAGGATAGTGGGTGGATTGA+GGG | 0.435009 | 8_3:-54532459 | Msa1295990:three_prime_UTR |
| TGTTGTTTCAGTTTGTTCCT+TGG | 0.436857 | 8_3:-54532490 | Msa1295990:intron |
| TTGTGTTTGTAGAAATTGAT+AGG | 0.436973 | 8_3:-54532008 | Msa1295990:three_prime_UTR |
| TTCATGCCCTTGATCTAAAT+AGG | 0.439822 | 8_3:-54532235 | Msa1295990:three_prime_UTR |
| GGTAAGGAATTTCTTAGAGC+TGG | 0.444368 | 8_3:-54536448 | Msa1295990:CDS |
| AGAGGATAGTGGGTGGATTG+AGG | 0.446470 | 8_3:-54532460 | Msa1295990:three_prime_UTR |
| AGTGGTATTGGCTTGGACCT+GGG | 0.447450 | 8_3:-54531867 | Msa1295990:three_prime_UTR |
| ACAAGAGTGTTTGGAGAGGT+TGG | 0.449160 | 8_3:-54536497 | Msa1295990:CDS |
| CTCACCGGTGTCAATTTAGG+TGG | 0.449646 | 8_3:-54531811 | Msa1295990:three_prime_UTR |
| TCAATCCTTGTGAAGCAGAC+TGG | 0.451465 | 8_3:+54533917 | None:intergenic |
| TAGAGATGGTTGTGGTTGGT+AGG | 0.452140 | 8_3:-54535366 | Msa1295990:three_prime_UTR |
| TTACATTTCGACATGGGAAT+GGG | 0.455740 | 8_3:-54532207 | Msa1295990:three_prime_UTR |
| CTGCTTCACAAGGATTGAAA+TGG | 0.456014 | 8_3:-54533912 | Msa1295990:three_prime_UTR |
| AAAGTATCCTATTTAGATCA+AGG | 0.462240 | 8_3:+54532228 | None:intergenic |
| AGAGATGGTTGTGGTTGGTA+GGG | 0.462889 | 8_3:-54535365 | Msa1295990:three_prime_UTR |
| TTTGTTGTAAAATTGACTTT+GGG | 0.470862 | 8_3:-54531961 | Msa1295990:three_prime_UTR |
| AGCAATCTGAAGCAGATTTG+AGG | 0.471492 | 8_3:-54535974 | Msa1295990:three_prime_UTR |
| TGCCTTATGTAATTGAAACT+TGG | 0.474359 | 8_3:-54535391 | Msa1295990:three_prime_UTR |
| TTCAGGTAAGTAGAAGGTGT+TGG | 0.476213 | 8_3:-54536058 | Msa1295990:intron |
| TTTACATTTCGACATGGGAA+TGG | 0.480866 | 8_3:-54532208 | Msa1295990:three_prime_UTR |
| TGTTGTGTTTACGATGTTGT+GGG | 0.481996 | 8_3:-54536424 | Msa1295990:CDS |
| GCTCAGTTGACGGTTCTTGA+AGG | 0.498376 | 8_3:-54536367 | Msa1295990:intron |
| TGTTTCAGTTTGTTCCTTGG+TGG | 0.498782 | 8_3:-54532487 | Msa1295990:intron |
| TTGTTCCTTGGTGGGTTGAG+AGG | 0.502042 | 8_3:-54532478 | Msa1295990:three_prime_UTR |
| TGGTAGAATTTCCCTTCTAG+TGG | 0.503528 | 8_3:+54532124 | None:intergenic |
| AGTGATATACCTGATTATAT+GGG | 0.505320 | 8_3:-54531744 | Msa1295990:three_prime_UTR |
| TGTTGGAGTATATGAAGCTC+TGG | 0.505904 | 8_3:-54536041 | Msa1295990:three_prime_UTR |
| TGGTGGGTTGAGAGGATAGT+GGG | 0.506063 | 8_3:-54532470 | Msa1295990:three_prime_UTR |
| GTTTCAGTTTGTTCCTTGGT+GGG | 0.507205 | 8_3:-54532486 | Msa1295990:intron |
| TGCTTTCAGAACCATGATGT+TGG | 0.508552 | 8_3:-54532061 | Msa1295990:three_prime_UTR |
| AGCACCATTAATGTATAAGA+TGG | 0.509670 | 8_3:-54532176 | Msa1295990:three_prime_UTR |
| GTGGGTGGATTGAGGGTCAA+AGG | 0.513095 | 8_3:-54532452 | Msa1295990:three_prime_UTR |
| TTGGTGGGTTGAGAGGATAG+TGG | 0.516245 | 8_3:-54532471 | Msa1295990:three_prime_UTR |
| GAATTTGTTGTCTGAGCTTG+GGG | 0.516659 | 8_3:-54533872 | Msa1295990:three_prime_UTR |
| TAGAGTTATCTGAAAATTGG+TGG | 0.516895 | 8_3:-54533992 | Msa1295990:three_prime_UTR |
| GTTGGTAGGGAATTGAAACT+TGG | 0.518117 | 8_3:-54535352 | Msa1295990:three_prime_UTR |
| GCTGAAATGCAACGTTGGTA+AGG | 0.521379 | 8_3:-54536464 | Msa1295990:CDS |
| AAGGCATAACTCTATGAGAA+AGG | 0.524823 | 8_3:+54535999 | None:intergenic |
| TTACGTGTGAGTATTCTGTT+TGG | 0.526399 | 8_3:-54532272 | Msa1295990:three_prime_UTR |
| TGGAGAGGTTGGGCTTCAGA+TGG | 0.529757 | 8_3:-54536486 | Msa1295990:CDS |
| AATAGAAAACCCACTTGGGT+TGG | 0.530725 | 8_3:-54531893 | Msa1295990:three_prime_UTR |
| GTGGAAACATGCTCAGTTGA+CGG | 0.542285 | 8_3:-54536377 | Msa1295990:CDS |
| ATGTTGTGTTTACGATGTTG+TGG | 0.545397 | 8_3:-54536425 | Msa1295990:CDS |
| GGATTAGAGATGGTTGTGGT+TGG | 0.545697 | 8_3:-54535370 | Msa1295990:three_prime_UTR |
| TTAAATAGATGCCACTAGAA+GGG | 0.547168 | 8_3:-54532135 | Msa1295990:three_prime_UTR |
| GTTTCAATAGAAAACCCACT+TGG | 0.555923 | 8_3:-54531898 | Msa1295990:three_prime_UTR |
| GATACTTTACATTTCGACAT+GGG | 0.559870 | 8_3:-54532213 | Msa1295990:three_prime_UTR |
| CTTGGATTAGAGAGCTAGAG+AGG | 0.567279 | 8_3:-54535334 | Msa1295990:intron |
| AAGTATCCTATTTAGATCAA+GGG | 0.582875 | 8_3:+54532229 | None:intergenic |
| ATAATCTGAATCACTCTACA+GGG | 0.583290 | 8_3:-54536534 | Msa1295990:CDS |
| TCGAGGAGGAGCACACTCCC+AGG | 0.583952 | 8_3:+54531850 | None:intergenic |
| ATTGAAACTTGGATTAGAGA+TGG | 0.584113 | 8_3:-54535380 | Msa1295990:three_prime_UTR |
| AAGGGCATGAAGCACACATA+GGG | 0.586573 | 8_3:+54532247 | None:intergenic |
| TGTTGTGGGTGTGTCTGTGT+TGG | 0.586833 | 8_3:-54536410 | Msa1295990:CDS |
| TCACCGGTGTCAATTTAGGT+GGG | 0.589557 | 8_3:-54531810 | Msa1295990:three_prime_UTR |
| GAAAGCCAGTCTGCTTCACA+AGG | 0.590388 | 8_3:-54533922 | Msa1295990:three_prime_UTR |
| CAAGGGCATGAAGCACACAT+AGG | 0.591480 | 8_3:+54532246 | None:intergenic |
| TTTCAATAGAAAACCCACTT+GGG | 0.593475 | 8_3:-54531897 | Msa1295990:three_prime_UTR |
| GTCTCAAGTTCGATTCTCAC+CGG | 0.594194 | 8_3:-54531826 | Msa1295990:three_prime_UTR |
| ACTTGGATTAGAGATGGTTG+TGG | 0.603295 | 8_3:-54535374 | Msa1295990:three_prime_UTR |
| GGATACTTTACATTTCGACA+TGG | 0.611653 | 8_3:-54532214 | Msa1295990:three_prime_UTR |
| GCATGTGATGTGTAATCTCA+TGG | 0.617206 | 8_3:-54536187 | Msa1295990:three_prime_UTR |
| TGGGATAAACTAAAATTATG+CGG | 0.621268 | 8_3:-54531942 | Msa1295990:three_prime_UTR |
| CAACAAGTAATGTAATGTTG+TGG | 0.624706 | 8_3:+54532104 | None:intergenic |
| TGGGTTGAGAGGATAGTGGG+TGG | 0.630521 | 8_3:-54532467 | Msa1295990:three_prime_UTR |
| CTGTGTTGGCCCAAAGTACG+TGG | 0.633159 | 8_3:-54536396 | Msa1295990:CDS |
| ACCACTAAGCCAACCCAAGT+GGG | 0.633812 | 8_3:+54531884 | None:intergenic |
| ACTATCCTCTCAACCCACCA+AGG | 0.641297 | 8_3:+54532473 | None:intergenic |
| AGATGGCTGAAATGCAACGT+TGG | 0.657203 | 8_3:-54536469 | Msa1295990:CDS |
| TACCACTAAGCCAACCCAAG+TGG | 0.657900 | 8_3:+54531883 | None:intergenic |
| ATGAGTTTGCTCGAGAACTG+AGG | 0.663154 | 8_3:-54533816 | Msa1295990:three_prime_UTR |
| TGGGAGTGTGCTCCTCCTCG+AGG | 0.663184 | 8_3:-54531848 | Msa1295990:three_prime_UTR |
| TAACCCACCTAAATTGACAC+CGG | 0.665504 | 8_3:+54531807 | None:intergenic |
| ATGTGATGATACTTTGTCGA+AGG | 0.672951 | 8_3:-54536251 | Msa1295990:exon |
| ATTCATGTTTCATGTCAATG+TGG | 0.686472 | 8_3:-54532306 | Msa1295990:three_prime_UTR |
| GTGCACAAGAGTGTTTGGAG+AGG | 0.688600 | 8_3:-54536501 | Msa1295990:CDS |
| GAATCGAACTTGAGACCTCG+AGG | 0.695897 | 8_3:+54531833 | None:intergenic |
| TAATCTGAATCACTCTACAG+GGG | 0.710260 | 8_3:-54536533 | Msa1295990:CDS |
| TCGAACTTGAGACCTCGAGG+AGG | 0.712524 | 8_3:+54531836 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTAATATATTTATTTAAAT+TGG | - | chr8_3:54536457-54536476 | Msa1295990:CDS | 0.0% |
| !! | AAAAATAATACATAATAGTT+AGG | + | chr8_3:54532705-54532724 | None:intergenic | 10.0% |
| !! | TTTAAATAGATAACTTAAAT+TGG | + | chr8_3:54534634-54534653 | None:intergenic | 10.0% |
| !! | TATATATCAATTTATATGTA+TGG | + | chr8_3:54534887-54534906 | None:intergenic | 10.0% |
| !! | AAAAACAAAATAAATGAAAA+AGG | - | chr8_3:54535233-54535252 | Msa1295990:intron | 10.0% |
| !! | AAAAAATTAAAAAATGAATG+GGG | + | chr8_3:54536495-54536514 | None:intergenic | 10.0% |
| !!! | TTACTTAATCTTATTTTTAC+AGG | - | chr8_3:54531848-54531867 | Msa1295990:three_prime_UTR | 15.0% |
| !! | AACTATAGAAATCAAAATAA+AGG | - | chr8_3:54532188-54532207 | Msa1295990:three_prime_UTR | 15.0% |
| !! | TTATTGAGATTATTATTTCA+CGG | - | chr8_3:54532483-54532502 | Msa1295990:intron | 15.0% |
| !!! | AATTTTGACCAAAATTATTA+TGG | - | chr8_3:54532587-54532606 | Msa1295990:intron | 15.0% |
| !! | TTATATTAGCAATTAGAAAA+GGG | + | chr8_3:54532943-54532962 | None:intergenic | 15.0% |
| !! | TAATTGCTAATATAAGTTAT+TGG | - | chr8_3:54532948-54532967 | Msa1295990:intron | 15.0% |
| !!! | AAATAGATAAATTTTCAAGT+TGG | + | chr8_3:54533628-54533647 | None:intergenic | 15.0% |
| !! | ACTTAATCTAATACTTTGAT+TGG | - | chr8_3:54531998-54532017 | Msa1295990:three_prime_UTR | 20.0% |
| !!! | AGAATATCCAAATAATTTTC+AGG | - | chr8_3:54532060-54532079 | Msa1295990:three_prime_UTR | 20.0% |
| !! | GTAAAATATACATCAAAGTA+TGG | - | chr8_3:54532210-54532229 | Msa1295990:three_prime_UTR | 20.0% |
| !! | AAGAATTTGTATATGCATAA+AGG | + | chr8_3:54532334-54532353 | None:intergenic | 20.0% |
| !! | TATTGAGATTATTATTTCAC+GGG | - | chr8_3:54532484-54532503 | Msa1295990:intron | 20.0% |
| !!! | TAAAAGTGCCATAATAATTT+TGG | + | chr8_3:54532598-54532617 | None:intergenic | 20.0% |
| !!! | AAAATTATTATGGCACTTTT+AGG | - | chr8_3:54532597-54532616 | Msa1295990:intron | 20.0% |
| !!! | TATGTATTATTTTTGCCTTA+TGG | - | chr8_3:54532711-54532730 | Msa1295990:intron | 20.0% |
| !!! | AGTTCTCAAATTTAGAATTT+TGG | - | chr8_3:54532906-54532925 | Msa1295990:intron | 20.0% |
| !! | CTTATATTAGCAATTAGAAA+AGG | + | chr8_3:54532944-54532963 | None:intergenic | 20.0% |
| !! | CATTTAATGACAAATATGAA+GGG | + | chr8_3:54533193-54533212 | None:intergenic | 20.0% |
| !! | TCATTTAATGACAAATATGA+AGG | + | chr8_3:54533194-54533213 | None:intergenic | 20.0% |
| !! | TTTGTCATTAAATGATTAGT+TGG | - | chr8_3:54533199-54533218 | Msa1295990:intron | 20.0% |
| !!! | TTTTGTGATATGCTTTTATA+AGG | - | chr8_3:54533257-54533276 | Msa1295990:intron | 20.0% |
| !!! | GACTTTGTTAATGATTTTTT+TGG | - | chr8_3:54533419-54533438 | Msa1295990:intron | 20.0% |
| !!! | TTTGTTAATGATTTTTTTGG+TGG | - | chr8_3:54533422-54533441 | Msa1295990:intron | 20.0% |
| !!! | AAGTTGTTTTGATTTAGTTT+TGG | - | chr8_3:54533461-54533480 | Msa1295990:intron | 20.0% |
| !! | AATTTAGTGTATTGAATTGT+AGG | + | chr8_3:54533697-54533716 | None:intergenic | 20.0% |
| !!! | CTATTAATTGCTATTCTATA+AGG | + | chr8_3:54533787-54533806 | None:intergenic | 20.0% |
| !! | TTTGTAAACTTTCATAATTC+TGG | - | chr8_3:54534098-54534117 | Msa1295990:intron | 20.0% |
| !!! | TTTTCATATACTGATATATC+AGG | - | chr8_3:54534345-54534364 | Msa1295990:intron | 20.0% |
| !! | ATATCTGAAAAATGTGTTTA+TGG | - | chr8_3:54534384-54534403 | Msa1295990:intron | 20.0% |
| !! | TTACATATGAAATGCATTAT+TGG | - | chr8_3:54534570-54534589 | Msa1295990:intron | 20.0% |
| !! | GTGATAATTATTTGATTCTT+TGG | - | chr8_3:54534691-54534710 | Msa1295990:intron | 20.0% |
| !! | AATTAGTTCCATATATTCTT+AGG | - | chr8_3:54534798-54534817 | Msa1295990:intron | 20.0% |
| !! | ATTAGTTCCATATATTCTTA+GGG | - | chr8_3:54534799-54534818 | Msa1295990:intron | 20.0% |
| !! | TTCTAAACAAATTTGATACT+TGG | + | chr8_3:54534829-54534848 | None:intergenic | 20.0% |
| !! | ATCGTAATATAAAAAACACA+TGG | + | chr8_3:54534864-54534883 | None:intergenic | 20.0% |
| !!! | AGATTTTGTTAAGTTTTCTA+AGG | - | chr8_3:54535353-54535372 | Msa1295990:three_prime_UTR | 20.0% |
| !!! | GATTTTGTTAAGTTTTCTAA+GGG | - | chr8_3:54535354-54535373 | Msa1295990:three_prime_UTR | 20.0% |
| !! | TCAAAACATTTGAATTATCA+AGG | + | chr8_3:54535388-54535407 | None:intergenic | 20.0% |
| !! | TATACCATCTTATACATTAA+TGG | + | chr8_3:54535966-54535985 | None:intergenic | 20.0% |
| !!! | TTTGTTGTAAAATTGACTTT+GGG | - | chr8_3:54536174-54536193 | Msa1295990:intron | 20.0% |
| !! | CTTCTTCAACAAAAAAAAAA+AGG | - | chr8_3:54536357-54536376 | Msa1295990:intron | 20.0% |
| ! | CTACTTACCTGAAAATTATT+TGG | + | chr8_3:54532070-54532089 | None:intergenic | 25.0% |
| !!! | ATAATTTTCAGGTAAGTAGA+AGG | - | chr8_3:54532071-54532090 | Msa1295990:three_prime_UTR | 25.0% |
| ! | AATAATCTCAATAAGACGAA+AGG | + | chr8_3:54532477-54532496 | None:intergenic | 25.0% |
| ! | CAAATCAAAGTAAGCTAATA+AGG | + | chr8_3:54532646-54532665 | None:intergenic | 25.0% |
| ! | CAATCATCAAATCAAATACA+TGG | + | chr8_3:54532680-54532699 | None:intergenic | 25.0% |
| ! | ATCCAAGTTTCAATTACATA+AGG | + | chr8_3:54532749-54532768 | None:intergenic | 25.0% |
| ! | TTAACATGAAACAAATCAAG+AGG | + | chr8_3:54532862-54532881 | None:intergenic | 25.0% |
| ! | TTGTATTCCAAAAATCCTTA+TGG | - | chr8_3:54532997-54533016 | Msa1295990:intron | 25.0% |
| ! | GGAATCATTATATAAGATGA+GGG | + | chr8_3:54533172-54533191 | None:intergenic | 25.0% |
| !! | GATTAGTTGGAATGATAAAT+AGG | - | chr8_3:54533212-54533231 | Msa1295990:intron | 25.0% |
| ! | TTTCAGTTAAAAGTAATGTC+AGG | - | chr8_3:54533331-54533350 | Msa1295990:intron | 25.0% |
| ! | GTTCTAATTAAGTTAGTTCA+AGG | - | chr8_3:54533483-54533502 | Msa1295990:intron | 25.0% |
| !! | AAAAAGGTGAGATTTTCATA+AGG | - | chr8_3:54533838-54533857 | Msa1295990:three_prime_UTR | 25.0% |
| !!! | AAGTATATGTAGTTTCTAGT+TGG | - | chr8_3:54534019-54534038 | Msa1295990:intron | 25.0% |
| !!! | AGTATATGTAGTTTCTAGTT+GGG | - | chr8_3:54534020-54534039 | Msa1295990:intron | 25.0% |
| !! | CATTTAGTTTCTGTTTAGAT+TGG | + | chr8_3:54534302-54534321 | None:intergenic | 25.0% |
| ! | TGCTTCTAATTCATTAAATG+AGG | - | chr8_3:54534417-54534436 | Msa1295990:intron | 25.0% |
| !!! | ATTTTGACCACATTATAAAC+AGG | - | chr8_3:54534750-54534769 | Msa1295990:intron | 25.0% |
| !! | TTTTGACCACATTATAAACA+GGG | - | chr8_3:54534751-54534770 | Msa1295990:intron | 25.0% |
| ! | ATAGTACACACAGATTAAAA+GGG | + | chr8_3:54534962-54534981 | None:intergenic | 25.0% |
| ! | AATAGTACACACAGATTAAA+AGG | + | chr8_3:54534963-54534982 | None:intergenic | 25.0% |
| !! | AAACAAAGCTTATGCTTTTA+TGG | + | chr8_3:54535205-54535224 | None:intergenic | 25.0% |
| ! | AAAATACAGAAAAACAAAGC+AGG | + | chr8_3:54535269-54535288 | None:intergenic | 25.0% |
| ! | ATGACATAAATCCAATCTAA+CGG | + | chr8_3:54535423-54535442 | None:intergenic | 25.0% |
| ! | AAGTATCCTATTTAGATCAA+GGG | + | chr8_3:54535909-54535928 | None:intergenic | 25.0% |
| !! | AAAGTATCCTATTTAGATCA+AGG | + | chr8_3:54535910-54535929 | None:intergenic | 25.0% |
| ! | TTGTGTTTGTAGAAATTGAT+AGG | - | chr8_3:54536127-54536146 | Msa1295990:intron | 25.0% |
| !!! | GTTTGTTGTAAAATTGACTT+TGG | - | chr8_3:54536173-54536192 | Msa1295990:intron | 25.0% |
| ! | TGGGATAAACTAAAATTATG+CGG | - | chr8_3:54536193-54536212 | Msa1295990:three_prime_UTR | 25.0% |
| ! | AAGTGATATACCTGATTATA+TGG | - | chr8_3:54536390-54536409 | Msa1295990:CDS | 25.0% |
| ! | AGTGATATACCTGATTATAT+GGG | - | chr8_3:54536391-54536410 | Msa1295990:CDS | 25.0% |
| ! | TATCTAAATCCCATATAATC+AGG | + | chr8_3:54536403-54536422 | None:intergenic | 25.0% |
| ATAATCTGAATCACTCTACA+GGG | - | chr8_3:54531601-54531620 | Msa1295990:three_prime_UTR | 30.0% | |
| TGCATGTAACGATATAACTA+TGG | - | chr8_3:54532414-54532433 | Msa1295990:three_prime_UTR | 30.0% | |
| ACATGTTGAAGACATAACTA+TGG | - | chr8_3:54532507-54532526 | Msa1295990:intron | 30.0% | |
| TGCCTTATGTAATTGAAACT+TGG | - | chr8_3:54532744-54532763 | Msa1295990:intron | 30.0% | |
| ! | ATTGAAACTTGGATTAGAGA+TGG | - | chr8_3:54532755-54532774 | Msa1295990:intron | 30.0% |
| ! | GATTTGTTTCATGTTAAAGC+TGG | - | chr8_3:54532865-54532884 | Msa1295990:intron | 30.0% |
| TATAAGTTATTGGACTGCTA+TGG | - | chr8_3:54532958-54532977 | Msa1295990:intron | 30.0% | |
| ! | TTACTCTAAGGGATTTAATG+TGG | - | chr8_3:54533029-54533048 | Msa1295990:intron | 30.0% |
| !! | TTCTATTTGTTGGTTCACTA+AGG | - | chr8_3:54533064-54533083 | Msa1295990:intron | 30.0% |
| !! | TCTATTTGTTGGTTCACTAA+GGG | - | chr8_3:54533065-54533084 | Msa1295990:intron | 30.0% |
| TTGTTCATGTGAATCATTTG+TGG | - | chr8_3:54533111-54533130 | Msa1295990:intron | 30.0% | |
| AATCATTTGTGGAATCAACT+TGG | - | chr8_3:54533122-54533141 | Msa1295990:intron | 30.0% | |
| GGGAATCATTATATAAGATG+AGG | + | chr8_3:54533173-54533192 | None:intergenic | 30.0% | |
| ! | GATTATGAGATGTTGTTGTT+TGG | - | chr8_3:54533390-54533409 | Msa1295990:intron | 30.0% |
| !!! | TTTTTTGGTGGATTTAGTCT+TGG | - | chr8_3:54533434-54533453 | Msa1295990:intron | 30.0% |
| !!! | ATTTTCATAAGGTATTGTGC+TGG | - | chr8_3:54533849-54533868 | Msa1295990:three_prime_UTR | 30.0% |
| GTATTCTAGTGTGAAAATCT+TGG | - | chr8_3:54533937-54533956 | Msa1295990:three_prime_UTR | 30.0% | |
| TGCATATTTGCAATCACAAA+AGG | + | chr8_3:54534075-54534094 | None:intergenic | 30.0% | |
| GTAAACTTTCATAATTCTGG+TGG | - | chr8_3:54534101-54534120 | Msa1295990:intron | 30.0% | |
| ACTCTAAGCTGAAAACAAAT+TGG | + | chr8_3:54534129-54534148 | None:intergenic | 30.0% | |
| GCTTAGAGTTATCTGAAAAT+TGG | - | chr8_3:54534140-54534159 | Msa1295990:intron | 30.0% | |
| TAGAGTTATCTGAAAATTGG+TGG | - | chr8_3:54534143-54534162 | Msa1295990:intron | 30.0% | |
| TTTCCTCTCAAAAAAACTTG+AGG | - | chr8_3:54534533-54534552 | Msa1295990:intron | 30.0% | |
| TTCCTCTCAAAAAAACTTGA+GGG | - | chr8_3:54534534-54534553 | Msa1295990:intron | 30.0% | |
| AAATGCATTATTGGAGAGTT+AGG | - | chr8_3:54534579-54534598 | Msa1295990:intron | 30.0% | |
| TTTAAATGCCCACTCATATT+TGG | - | chr8_3:54534648-54534667 | Msa1295990:intron | 30.0% | |
| ! | TCATAGAGTGAAATTTTCCT+TGG | - | chr8_3:54535086-54535105 | Msa1295990:intron | 30.0% |
| TAACATATGCTTAAACACCA+AGG | + | chr8_3:54535106-54535125 | None:intergenic | 30.0% | |
| ! | TGGATTATATAGAGAAGCAT+AGG | + | chr8_3:54535175-54535194 | None:intergenic | 30.0% |
| !! | GTTTTAGCATAACATAGTTG+TGG | - | chr8_3:54535586-54535605 | Msa1295990:intron | 30.0% |
| ATTCATGTTTCATGTCAATG+TGG | - | chr8_3:54535829-54535848 | Msa1295990:intron | 30.0% | |
| GATACTTTACATTTCGACAT+GGG | - | chr8_3:54535922-54535941 | Msa1295990:intron | 30.0% | |
| AGCACCATTAATGTATAAGA+TGG | - | chr8_3:54535959-54535978 | Msa1295990:three_prime_UTR | 30.0% | |
| TTAAATAGATGCCACTAGAA+GGG | - | chr8_3:54536000-54536019 | Msa1295990:three_prime_UTR | 30.0% | |
| CAACAAGTAATGTAATGTTG+TGG | + | chr8_3:54536034-54536053 | None:intergenic | 30.0% | |
| TTTCAATAGAAAACCCACTT+GGG | - | chr8_3:54536238-54536257 | Msa1295990:three_prime_UTR | 30.0% | |
| CATAATCTGAATCACTCTAC+AGG | - | chr8_3:54531600-54531619 | Msa1295990:three_prime_UTR | 35.0% | |
| TAATCTGAATCACTCTACAG+GGG | - | chr8_3:54531602-54531621 | Msa1295990:three_prime_UTR | 35.0% | |
| ATGTTGTGTTTACGATGTTG+TGG | - | chr8_3:54531710-54531729 | Msa1295990:three_prime_UTR | 35.0% | |
| TGTTGTGTTTACGATGTTGT+GGG | - | chr8_3:54531711-54531730 | Msa1295990:three_prime_UTR | 35.0% | |
| ATGTGATGATACTTTGTCGA+AGG | - | chr8_3:54531884-54531903 | Msa1295990:three_prime_UTR | 35.0% | |
| TATCAGCACAAAGAAAGACT+CGG | + | chr8_3:54532041-54532060 | None:intergenic | 35.0% | |
| AAGGCATAACTCTATGAGAA+AGG | + | chr8_3:54532139-54532158 | None:intergenic | 35.0% | |
| ATCTGCTTCAGATTGCTAAA+AGG | + | chr8_3:54532158-54532177 | None:intergenic | 35.0% | |
| !!! | TTCCATTTTTTCATCCCCTT+AGG | - | chr8_3:54532388-54532407 | Msa1295990:three_prime_UTR | 35.0% |
| TACCTAAGGGGATGAAAAAA+TGG | + | chr8_3:54532393-54532412 | None:intergenic | 35.0% | |
| ACTAATGCGAGATTATTGTG+TGG | - | chr8_3:54532451-54532470 | Msa1295990:three_prime_UTR | 35.0% | |
| AGGCAAAATCTGTTACCATA+AGG | + | chr8_3:54532729-54532748 | None:intergenic | 35.0% | |
| GAAGTGAGAAGAATGAGTAT+TGG | + | chr8_3:54532836-54532855 | None:intergenic | 35.0% | |
| CATGAAACAAATCAAGAGGA+AGG | + | chr8_3:54532858-54532877 | None:intergenic | 35.0% | |
| TTGTTTCATGTTAAAGCTGG+TGG | - | chr8_3:54532868-54532887 | Msa1295990:intron | 35.0% | |
| ! | GTAAGCACCATAAGGATTTT+TGG | + | chr8_3:54533007-54533026 | None:intergenic | 35.0% |
| GAGTAATAGTAAGCACCATA+AGG | + | chr8_3:54533015-54533034 | None:intergenic | 35.0% | |
| TGGTGCTTACTATTACTCTA+AGG | - | chr8_3:54533017-54533036 | Msa1295990:intron | 35.0% | |
| GGTGCTTACTATTACTCTAA+GGG | - | chr8_3:54533018-54533037 | Msa1295990:intron | 35.0% | |
| ATTTAATGTGGCAGCAATTG+TGG | - | chr8_3:54533041-54533060 | Msa1295990:intron | 35.0% | |
| ! | GCAATTGTGGTTCTATTTGT+TGG | - | chr8_3:54533054-54533073 | Msa1295990:intron | 35.0% |
| GACAAGTGTACTTGATGAAA+AGG | + | chr8_3:54533814-54533833 | None:intergenic | 35.0% | |
| TTCATCAAGTACACTTGTCT+CGG | - | chr8_3:54533815-54533834 | Msa1295990:three_prime_UTR | 35.0% | |
| TTTATGTGTCTAACTGCCAA+TGG | - | chr8_3:54533874-54533893 | Msa1295990:three_prime_UTR | 35.0% | |
| TTTCCATTGCAACATTCCAT+TGG | + | chr8_3:54533893-54533912 | None:intergenic | 35.0% | |
| GAATGTTGCAATGGAAATTC+TGG | - | chr8_3:54533896-54533915 | Msa1295990:three_prime_UTR | 35.0% | |
| CTTCAAAATGTCTAGCATAC+TGG | + | chr8_3:54534002-54534021 | None:intergenic | 35.0% | |
| !! | ATATGTAGTTTCTAGTTGGG+TGG | - | chr8_3:54534023-54534042 | Msa1295990:intron | 35.0% |
| TACTGATATATCAGGTATGC+TGG | - | chr8_3:54534353-54534372 | Msa1295990:intron | 35.0% | |
| CATGAATGGTACAATGACAA+TGG | + | chr8_3:54534469-54534488 | None:intergenic | 35.0% | |
| CATTGTCATTGTACCATTCA+TGG | - | chr8_3:54534467-54534486 | Msa1295990:intron | 35.0% | |
| TCATTGTACCATTCATGGAT+TGG | - | chr8_3:54534472-54534491 | Msa1295990:intron | 35.0% | |
| CATTGTACCATTCATGGATT+GGG | - | chr8_3:54534473-54534492 | Msa1295990:intron | 35.0% | |
| !!! | ATCCCTCAAGTTTTTTTGAG+AGG | + | chr8_3:54534539-54534558 | None:intergenic | 35.0% |
| CATTGTCCCTGTTTATAATG+TGG | + | chr8_3:54534760-54534779 | None:intergenic | 35.0% | |
| TGGAATGCCCTAAGAATATA+TGG | + | chr8_3:54534809-54534828 | None:intergenic | 35.0% | |
| TGTTGAAATGTGCAGTCATT+TGG | + | chr8_3:54535144-54535163 | None:intergenic | 35.0% | |
| !!! | TATGCTTTTATGGTGTCATC+TGG | + | chr8_3:54535195-54535214 | None:intergenic | 35.0% |
| TAGACTAACTTAGCAAAACC+AGG | + | chr8_3:54535324-54535343 | None:intergenic | 35.0% | |
| TTGTTACTAGACCGTTAGAT+TGG | - | chr8_3:54535409-54535428 | Msa1295990:intron | 35.0% | |
| GATTGGATTTATGTCATGTG+TGG | - | chr8_3:54535426-54535445 | Msa1295990:intron | 35.0% | |
| CGAGCTTGGCTTAATTTAAT+TGG | + | chr8_3:54535464-54535483 | None:intergenic | 35.0% | |
| !!! | TGATTGCTGCTGATGTTTTT+TGG | - | chr8_3:54535486-54535505 | Msa1295990:intron | 35.0% |
| !!! | GATTGCTGCTGATGTTTTTT+GGG | - | chr8_3:54535487-54535506 | Msa1295990:intron | 35.0% |
| !! | TGTTGTTTCAGTTTGTTCCT+TGG | - | chr8_3:54535645-54535664 | Msa1295990:intron | 35.0% |
| ! | TTGTGTTCACTTCATTTTGC+AGG | - | chr8_3:54535723-54535742 | Msa1295990:intron | 35.0% |
| GGTAAGACTAAGACTCAAAA+TGG | - | chr8_3:54535744-54535763 | Msa1295990:intron | 35.0% | |
| TGGCTTATGTGTGTAAAAAC+TGG | - | chr8_3:54535764-54535783 | Msa1295990:intron | 35.0% | |
| TTACGTGTGAGTATTCTGTT+TGG | - | chr8_3:54535863-54535882 | Msa1295990:intron | 35.0% | |
| TTCATGCCCTTGATCTAAAT+AGG | - | chr8_3:54535900-54535919 | Msa1295990:intron | 35.0% | |
| GGATACTTTACATTTCGACA+TGG | - | chr8_3:54535921-54535940 | Msa1295990:intron | 35.0% | |
| TTTACATTTCGACATGGGAA+TGG | - | chr8_3:54535927-54535946 | Msa1295990:intron | 35.0% | |
| TTACATTTCGACATGGGAAT+GGG | - | chr8_3:54535928-54535947 | Msa1295990:intron | 35.0% | |
| GTTAAATAGATGCCACTAGA+AGG | - | chr8_3:54535999-54536018 | Msa1295990:three_prime_UTR | 35.0% | |
| !! | TAGAGCTTTTTCCAACATCA+TGG | + | chr8_3:54536088-54536107 | None:intergenic | 35.0% |
| ! | GCAGCTTTCAAATTGGTAAT+AGG | - | chr8_3:54536215-54536234 | Msa1295990:three_prime_UTR | 35.0% |
| GTTTCAATAGAAAACCCACT+TGG | - | chr8_3:54536237-54536256 | Msa1295990:three_prime_UTR | 35.0% | |
| !! | AACATTTGCGACTGTTTTGA+AGG | - | chr8_3:54536531-54536550 | Msa1295990:CDS | 35.0% |
| !! | ACATTTGCGACTGTTTTGAA+GGG | - | chr8_3:54536532-54536551 | Msa1295990:CDS | 35.0% |
| GGTAAGGAATTTCTTAGAGC+TGG | - | chr8_3:54531687-54531706 | Msa1295990:three_prime_UTR | 40.0% | |
| AGCATGTTTCCACGTACTTT+GGG | + | chr8_3:54531751-54531770 | None:intergenic | 40.0% | |
| GCATGTGATGTGTAATCTCA+TGG | - | chr8_3:54531948-54531967 | Msa1295990:three_prime_UTR | 40.0% | |
| ! | TTCAGGTAAGTAGAAGGTGT+TGG | - | chr8_3:54532077-54532096 | Msa1295990:three_prime_UTR | 40.0% |
| TGTTGGAGTATATGAAGCTC+TGG | - | chr8_3:54532094-54532113 | Msa1295990:three_prime_UTR | 40.0% | |
| ! | AGCAATCTGAAGCAGATTTG+AGG | - | chr8_3:54532161-54532180 | Msa1295990:three_prime_UTR | 40.0% |
| TCAAACCAGCTCATGAGAAA+TGG | - | chr8_3:54532279-54532298 | Msa1295990:three_prime_UTR | 40.0% | |
| TCGTTACATGCACTACCTAA+GGG | + | chr8_3:54532406-54532425 | None:intergenic | 40.0% | |
| ATCGTTACATGCACTACCTA+AGG | + | chr8_3:54532407-54532426 | None:intergenic | 40.0% | |
| TGACTGAGTTGTGTGACTTA+GGG | - | chr8_3:54532620-54532639 | Msa1295990:intron | 40.0% | |
| ! | ACTTGGATTAGAGATGGTTG+TGG | - | chr8_3:54532761-54532780 | Msa1295990:intron | 40.0% |
| ! | GTTGGTAGGGAATTGAAACT+TGG | - | chr8_3:54532783-54532802 | Msa1295990:intron | 40.0% |
| GACTGCTATGGCTCTTAAAA+TGG | - | chr8_3:54532970-54532989 | Msa1295990:intron | 40.0% | |
| TACGCTTGACATATCTAGCT+AGG | - | chr8_3:54533288-54533307 | Msa1295990:intron | 40.0% | |
| ACTTATGATTGAATCCCGCA+TGG | - | chr8_3:54533660-54533679 | Msa1295990:intron | 40.0% | |
| AGTACACTTGTCTCGGAAAA+AGG | - | chr8_3:54533822-54533841 | Msa1295990:three_prime_UTR | 40.0% | |
| !! | GACTTTGATTGCTTTGGAGT+TGG | + | chr8_3:54534183-54534202 | None:intergenic | 40.0% |
| CTGCTTCACAAGGATTGAAA+TGG | - | chr8_3:54534223-54534242 | Msa1295990:intron | 40.0% | |
| ! | TTGAAATGGTCTTTTGCTGC+TGG | - | chr8_3:54534237-54534256 | Msa1295990:intron | 40.0% |
| !! | ACGAATTTGTTGTCTGAGCT+TGG | - | chr8_3:54534261-54534280 | Msa1295990:intron | 40.0% |
| !! | CGAATTTGTTGTCTGAGCTT+GGG | - | chr8_3:54534262-54534281 | Msa1295990:intron | 40.0% |
| !! | GAATTTGTTGTCTGAGCTTG+GGG | - | chr8_3:54534263-54534282 | Msa1295990:intron | 40.0% |
| AATGCCCACTCATATTTGGT+TGG | - | chr8_3:54534652-54534671 | Msa1295990:intron | 40.0% | |
| CAGTCCAACCAAATATGAGT+GGG | + | chr8_3:54534659-54534678 | None:intergenic | 40.0% | |
| ! | TTCAACCCATCTTGTTGTAG+GGG | + | chr8_3:54535060-54535079 | None:intergenic | 40.0% |
| ! | CTTCAACCCATCTTGTTGTA+GGG | + | chr8_3:54535061-54535080 | None:intergenic | 40.0% |
| ! | ACTTCAACCCATCTTGTTGT+AGG | + | chr8_3:54535062-54535081 | None:intergenic | 40.0% |
| CAGAAAAACAAAGCAGGTGT+AGG | + | chr8_3:54535263-54535282 | None:intergenic | 40.0% | |
| !!! | TGATGTTTTTTGGGCTGCAT+TGG | - | chr8_3:54535496-54535515 | Msa1295990:intron | 40.0% |
| ! | TGTTTCAGTTTGTTCCTTGG+TGG | - | chr8_3:54535648-54535667 | Msa1295990:intron | 40.0% |
| ! | GTTTCAGTTTGTTCCTTGGT+GGG | - | chr8_3:54535649-54535668 | Msa1295990:intron | 40.0% |
| TGGTAGAATTTCCCTTCTAG+TGG | + | chr8_3:54536014-54536033 | None:intergenic | 40.0% | |
| TGCTTTCAGAACCATGATGT+TGG | - | chr8_3:54536074-54536093 | Msa1295990:intron | 40.0% | |
| TTATGCGGCAGCTTTCAAAT+TGG | - | chr8_3:54536208-54536227 | Msa1295990:three_prime_UTR | 40.0% | |
| AATAGAAAACCCACTTGGGT+TGG | - | chr8_3:54536242-54536261 | Msa1295990:three_prime_UTR | 40.0% | |
| ! | ATTCTCACCGGTGTCAATTT+AGG | - | chr8_3:54536321-54536340 | Msa1295990:intron | 40.0% |
| TAACCCACCTAAATTGACAC+CGG | + | chr8_3:54536331-54536350 | None:intergenic | 40.0% | |
| TCACTCTACAGGGGCTATTT+CGG | - | chr8_3:54531611-54531630 | Msa1295990:three_prime_UTR | 45.0% | |
| !! | ACAAGAGTGTTTGGAGAGGT+TGG | - | chr8_3:54531638-54531657 | Msa1295990:three_prime_UTR | 45.0% |
| !! | CAAGAGTGTTTGGAGAGGTT+GGG | - | chr8_3:54531639-54531658 | Msa1295990:three_prime_UTR | 45.0% |
| AGATGGCTGAAATGCAACGT+TGG | - | chr8_3:54531666-54531685 | Msa1295990:three_prime_UTR | 45.0% | |
| GCTGAAATGCAACGTTGGTA+AGG | - | chr8_3:54531671-54531690 | Msa1295990:three_prime_UTR | 45.0% | |
| GAGCATGTTTCCACGTACTT+TGG | + | chr8_3:54531752-54531771 | None:intergenic | 45.0% | |
| GTGGAAACATGCTCAGTTGA+CGG | - | chr8_3:54531758-54531777 | Msa1295990:three_prime_UTR | 45.0% | |
| AGCATCCATTTCTCATGAGC+TGG | + | chr8_3:54532287-54532306 | None:intergenic | 45.0% | |
| CGTTACATGCACTACCTAAG+GGG | + | chr8_3:54532405-54532424 | None:intergenic | 45.0% | |
| GTGACTGAGTTGTGTGACTT+AGG | - | chr8_3:54532619-54532638 | Msa1295990:intron | 45.0% | |
| GGATTAGAGATGGTTGTGGT+TGG | - | chr8_3:54532765-54532784 | Msa1295990:intron | 45.0% | |
| TAGAGATGGTTGTGGTTGGT+AGG | - | chr8_3:54532769-54532788 | Msa1295990:intron | 45.0% | |
| ! | AGAGATGGTTGTGGTTGGTA+GGG | - | chr8_3:54532770-54532789 | Msa1295990:intron | 45.0% |
| ! | CTTGGATTAGAGAGCTAGAG+AGG | - | chr8_3:54532801-54532820 | Msa1295990:intron | 45.0% |
| ATTGAATCCCGCATGGTAGT+TGG | - | chr8_3:54533667-54533686 | Msa1295990:intron | 45.0% | |
| CTGCCAATGGAATGTTGCAA+TGG | - | chr8_3:54533887-54533906 | Msa1295990:three_prime_UTR | 45.0% | |
| GTCGCAGACTTTGATTGCTT+TGG | + | chr8_3:54534189-54534208 | None:intergenic | 45.0% | |
| TCAATCCTTGTGAAGCAGAC+TGG | + | chr8_3:54534221-54534240 | None:intergenic | 45.0% | |
| ! | ATGAGTTTGCTCGAGAACTG+AGG | - | chr8_3:54534319-54534338 | Msa1295990:intron | 45.0% |
| GATATATCAGGTATGCTGGC+TGG | - | chr8_3:54534357-54534376 | Msa1295990:intron | 45.0% | |
| TGAGAGACCCAATCCATGAA+TGG | + | chr8_3:54534483-54534502 | None:intergenic | 45.0% | |
| CCAGTCCAACCAAATATGAG+TGG | + | chr8_3:54534660-54534679 | None:intergenic | 45.0% | |
| CCACTCATATTTGGTTGGAC+TGG | - | chr8_3:54534657-54534676 | Msa1295990:intron | 45.0% | |
| GGTAGTCACTACAACAAGAG+GGG | + | chr8_3:54535039-54535058 | None:intergenic | 45.0% | |
| GGGTAGTCACTACAACAAGA+GGG | + | chr8_3:54535040-54535059 | None:intergenic | 45.0% | |
| TGACTACCCCTACAACAAGA+TGG | - | chr8_3:54535051-54535070 | Msa1295990:intron | 45.0% | |
| GACTACCCCTACAACAAGAT+GGG | - | chr8_3:54535052-54535071 | Msa1295990:intron | 45.0% | |
| ! | CTTAGCAAAACCAGGAGTGT+AGG | + | chr8_3:54535316-54535335 | None:intergenic | 45.0% |
| TGTTGACATGGTCTGTGTGA+TGG | - | chr8_3:54535534-54535553 | Msa1295990:intron | 45.0% | |
| ! | AAGGGCATGAAGCACACATA+GGG | + | chr8_3:54535891-54535910 | None:intergenic | 45.0% |
| !! | TTGGGTTGGCTTAGTGGTAT+TGG | - | chr8_3:54536256-54536275 | Msa1295990:exon | 45.0% |
| !! | TTGGCTTAGTGGTATTGGCT+TGG | - | chr8_3:54536261-54536280 | Msa1295990:exon | 45.0% |
| GTCTCAAGTTCGATTCTCAC+CGG | - | chr8_3:54536309-54536328 | Msa1295990:intron | 45.0% | |
| ! | TCACCGGTGTCAATTTAGGT+GGG | - | chr8_3:54536325-54536344 | Msa1295990:intron | 45.0% |
| !! | AAAAAAATTAAAAAATGAAT+GGG | + | chr8_3:54536496-54536515 | None:intergenic | 5.0% |
| !! | AAAAAAAATTAAAAAATGAA+TGG | + | chr8_3:54536497-54536516 | None:intergenic | 5.0% |
| ! | CACTCTACAGGGGCTATTTC+GGG | - | chr8_3:54531612-54531631 | Msa1295990:three_prime_UTR | 50.0% |
| !! | TTCGGGTGCACAAGAGTGTT+TGG | - | chr8_3:54531629-54531648 | Msa1295990:three_prime_UTR | 50.0% |
| !! | GTGCACAAGAGTGTTTGGAG+AGG | - | chr8_3:54531634-54531653 | Msa1295990:three_prime_UTR | 50.0% |
| TGTTGTGGGTGTGTCTGTGT+TGG | - | chr8_3:54531725-54531744 | Msa1295990:three_prime_UTR | 50.0% | |
| GCTCAGTTGACGGTTCTTGA+AGG | - | chr8_3:54531768-54531787 | Msa1295990:three_prime_UTR | 50.0% | |
| TAGGTCAGCCAACTACCATG+CGG | + | chr8_3:54533678-54533697 | None:intergenic | 50.0% | |
| GAAAGCCAGTCTGCTTCACA+AGG | - | chr8_3:54534213-54534232 | Msa1295990:intron | 50.0% | |
| GGGGTAGTCACTACAACAAG+AGG | + | chr8_3:54535041-54535060 | None:intergenic | 50.0% | |
| TCCATTTCCACCTACACTCC+TGG | - | chr8_3:54535303-54535322 | Msa1295990:intron | 50.0% | |
| ! | ACCAGGAGTGTAGGTGGAAA+TGG | + | chr8_3:54535307-54535326 | None:intergenic | 50.0% |
| ! | AGCAAAACCAGGAGTGTAGG+TGG | + | chr8_3:54535313-54535332 | None:intergenic | 50.0% |
| TCTGCCTACTGCTGTTGACA+TGG | - | chr8_3:54535522-54535541 | Msa1295990:intron | 50.0% | |
| CAGACCATGTCAACAGCAGT+AGG | + | chr8_3:54535529-54535548 | None:intergenic | 50.0% | |
| !! | TTGTTCCTTGGTGGGTTGAG+AGG | - | chr8_3:54535657-54535676 | Msa1295990:intron | 50.0% |
| ACTATCCTCTCAACCCACCA+AGG | + | chr8_3:54535665-54535684 | None:intergenic | 50.0% | |
| !! | TTGGTGGGTTGAGAGGATAG+TGG | - | chr8_3:54535664-54535683 | Msa1295990:intron | 50.0% |
| !! | TGGTGGGTTGAGAGGATAGT+GGG | - | chr8_3:54535665-54535684 | Msa1295990:intron | 50.0% |
| !! | AGAGGATAGTGGGTGGATTG+AGG | - | chr8_3:54535675-54535694 | Msa1295990:intron | 50.0% |
| !! | GAGGATAGTGGGTGGATTGA+GGG | - | chr8_3:54535676-54535695 | Msa1295990:intron | 50.0% |
| ! | CAAGGGCATGAAGCACACAT+AGG | + | chr8_3:54535892-54535911 | None:intergenic | 50.0% |
| ACCACTAAGCCAACCCAAGT+GGG | + | chr8_3:54536254-54536273 | None:intergenic | 50.0% | |
| TACCACTAAGCCAACCCAAG+TGG | + | chr8_3:54536255-54536274 | None:intergenic | 50.0% | |
| !! | TAGTGGTATTGGCTTGGACC+TGG | - | chr8_3:54536267-54536286 | Msa1295990:exon | 50.0% |
| !! | AGTGGTATTGGCTTGGACCT+GGG | - | chr8_3:54536268-54536287 | Msa1295990:CDS | 50.0% |
| GAATCGAACTTGAGACCTCG+AGG | + | chr8_3:54536305-54536324 | None:intergenic | 50.0% | |
| ! | CTCACCGGTGTCAATTTAGG+TGG | - | chr8_3:54536324-54536343 | Msa1295990:intron | 50.0% |
| TGGAGAGGTTGGGCTTCAGA+TGG | - | chr8_3:54531649-54531668 | Msa1295990:three_prime_UTR | 55.0% | |
| ! | CTGTGTTGGCCCAAAGTACG+TGG | - | chr8_3:54531739-54531758 | Msa1295990:three_prime_UTR | 55.0% |
| AGGTCAGCCAACTACCATGC+GGG | + | chr8_3:54533677-54533696 | None:intergenic | 55.0% | |
| CAGCAGCAATCAGACGAGCT+TGG | + | chr8_3:54535478-54535497 | None:intergenic | 55.0% | |
| !! | TGGGTTGAGAGGATAGTGGG+TGG | - | chr8_3:54535668-54535687 | Msa1295990:intron | 55.0% |
| !! | GTGGGTGGATTGAGGGTCAA+AGG | - | chr8_3:54535683-54535702 | Msa1295990:intron | 55.0% |
| !! | ACCCACTTGGGTTGGCTTAG+TGG | - | chr8_3:54536250-54536269 | Msa1295990:exon | 55.0% |
| TCGAACTTGAGACCTCGAGG+AGG | + | chr8_3:54536302-54536321 | None:intergenic | 55.0% | |
| ! | TCGAGGAGGAGCACACTCCC+AGG | + | chr8_3:54536288-54536307 | None:intergenic | 65.0% |
| ! | TGGGAGTGTGCTCCTCCTCG+AGG | - | chr8_3:54536287-54536306 | Msa1295990:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 54531597 | 54536560 | 54531597 | ID=Msa1295990;Name=Msa1295990 |
| chr8_3 | mRNA | 54531597 | 54536560 | 54531597 | ID=Msa1295990-mRNA-1;Parent=Msa1295990;Name=Msa1295990-mRNA-1;_AED=0.33;_eAED=0.33;_QI=0|1|0.83|1|0.2|0.16|6|1429|70 |
| chr8_3 | exon | 54531597 | 54532501 | 54531597 | ID=Msa1295990-mRNA-1:exon:15690;Parent=Msa1295990-mRNA-1 |
| chr8_3 | exon | 54533791 | 54534016 | 54533791 | ID=Msa1295990-mRNA-1:exon:15689;Parent=Msa1295990-mRNA-1 |
| chr8_3 | exon | 54535335 | 54535417 | 54535335 | ID=Msa1295990-mRNA-1:exon:15688;Parent=Msa1295990-mRNA-1 |
| chr8_3 | exon | 54535948 | 54536075 | 54535948 | ID=Msa1295990-mRNA-1:exon:15687;Parent=Msa1295990-mRNA-1 |
| chr8_3 | exon | 54536181 | 54536287 | 54536181 | ID=Msa1295990-mRNA-1:exon:15686;Parent=Msa1295990-mRNA-1 |
| chr8_3 | exon | 54536368 | 54536560 | 54536368 | ID=Msa1295990-mRNA-1:exon:15685;Parent=Msa1295990-mRNA-1 |
| chr8_3 | CDS | 54536368 | 54536560 | 54536368 | ID=Msa1295990-mRNA-1:cds;Parent=Msa1295990-mRNA-1 |
| chr8_3 | CDS | 54536268 | 54536287 | 54536268 | ID=Msa1295990-mRNA-1:cds;Parent=Msa1295990-mRNA-1 |
| chr8_3 | three_prime_UTR | 54536181 | 54536267 | 54536181 | ID=Msa1295990-mRNA-1:three_prime_utr;Parent=Msa1295990-mRNA-1 |
| chr8_3 | three_prime_UTR | 54535948 | 54536075 | 54535948 | ID=Msa1295990-mRNA-1:three_prime_utr;Parent=Msa1295990-mRNA-1 |
| chr8_3 | three_prime_UTR | 54535335 | 54535417 | 54535335 | ID=Msa1295990-mRNA-1:three_prime_utr;Parent=Msa1295990-mRNA-1 |
| chr8_3 | three_prime_UTR | 54533791 | 54534016 | 54533791 | ID=Msa1295990-mRNA-1:three_prime_utr;Parent=Msa1295990-mRNA-1 |
| chr8_3 | three_prime_UTR | 54531597 | 54532501 | 54531597 | ID=Msa1295990-mRNA-1:three_prime_utr;Parent=Msa1295990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
