Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1296540 | sp|Q9FMH8|RD21B_ARATH | 64.789 | 355 | 100 | 6 | 9 | 345 | 10 | 357 | 3.19e-164 | 469 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1296540 | A0A072UNT0 | 96.379 | 359 | 9 | 1 | 1 | 355 | 1 | 359 | 0.0 | 718 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1296540 | Msa1403660 | 0.800976 | 1.119147e-48 | -8.615850e-47 |
| Msa1296540 | Msa1417760 | 0.850659 | 1.472155e-60 | -8.615850e-47 |
| Msa1296540 | Msa1462780 | 0.803395 | 3.559007e-49 | -8.615850e-47 |
| Msa1196130 | Msa1296540 | 0.862331 | 5.464902e-64 | -8.615850e-47 |
| Msa0921860 | Msa1296540 | 0.804612 | 1.987047e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1296540 | MtrunA17_Chr4g0053311 | 96.379 | 359 | 9 | 1 | 1 | 355 | 1 | 359 | 0.0 | 718 |
| Msa1296540 | MtrunA17_Chr3g0134231 | 63.966 | 358 | 114 | 2 | 3 | 345 | 8 | 365 | 1.86e-171 | 486 |
| Msa1296540 | MtrunA17_Chr1g0208261 | 66.964 | 336 | 107 | 3 | 12 | 346 | 68 | 400 | 3.43e-168 | 479 |
| Msa1296540 | MtrunA17_Chr1g0153011 | 61.838 | 359 | 104 | 2 | 2 | 346 | 8 | 347 | 1.42e-163 | 465 |
| Msa1296540 | MtrunA17_Chr3g0116551 | 50.275 | 364 | 162 | 7 | 4 | 354 | 1 | 358 | 4.09e-124 | 361 |
| Msa1296540 | MtrunA17_Chr3g0144281 | 49.128 | 344 | 164 | 4 | 4 | 342 | 11 | 348 | 2.14e-122 | 356 |
| Msa1296540 | MtrunA17_Chr4g0041061 | 50.000 | 342 | 159 | 8 | 5 | 341 | 10 | 344 | 1.03e-118 | 347 |
| Msa1296540 | MtrunA17_Chr4g0058081 | 49.284 | 349 | 162 | 7 | 4 | 342 | 1 | 344 | 3.70e-117 | 343 |
| Msa1296540 | MtrunA17_Chr4g0040881 | 51.553 | 322 | 145 | 7 | 24 | 341 | 30 | 344 | 6.68e-117 | 342 |
| Msa1296540 | MtrunA17_Chr5g0405751 | 48.824 | 340 | 164 | 6 | 6 | 341 | 10 | 343 | 8.92e-116 | 339 |
| Msa1296540 | MtrunA17_Chr4g0041081 | 50.932 | 322 | 147 | 7 | 24 | 341 | 30 | 344 | 1.16e-115 | 339 |
| Msa1296540 | MtrunA17_Chr2g0325121 | 47.813 | 343 | 167 | 5 | 3 | 343 | 6 | 338 | 6.67e-115 | 337 |
| Msa1296540 | MtrunA17_Chr4g0024411 | 49.693 | 326 | 148 | 6 | 23 | 341 | 26 | 342 | 2.34e-114 | 335 |
| Msa1296540 | MtrunA17_Chr4g0060251 | 49.422 | 346 | 157 | 9 | 3 | 341 | 10 | 344 | 5.42e-114 | 335 |
| Msa1296540 | MtrunA17_Chr3g0142071 | 51.290 | 310 | 148 | 3 | 34 | 342 | 49 | 356 | 1.70e-112 | 335 |
| Msa1296540 | MtrunA17_Chr2g0315491 | 49.263 | 339 | 161 | 6 | 6 | 341 | 10 | 340 | 6.38e-112 | 329 |
| Msa1296540 | MtrunA17_Chr4g0041481 | 51.133 | 309 | 140 | 6 | 35 | 341 | 40 | 339 | 3.23e-111 | 327 |
| Msa1296540 | MtrunA17_Chr4g0040851 | 47.025 | 353 | 166 | 7 | 1 | 341 | 16 | 359 | 3.47e-111 | 328 |
| Msa1296540 | MtrunA17_Chr4g0041521 | 48.607 | 323 | 155 | 6 | 21 | 341 | 26 | 339 | 1.46e-109 | 323 |
| Msa1296540 | MtrunA17_Chr2g0319991 | 45.536 | 336 | 175 | 5 | 9 | 341 | 13 | 343 | 6.27e-104 | 309 |
| Msa1296540 | MtrunA17_Chr4g0041471 | 46.567 | 335 | 172 | 6 | 10 | 341 | 11 | 341 | 3.14e-103 | 307 |
| Msa1296540 | MtrunA17_Chr2g0283901 | 45.245 | 347 | 170 | 9 | 8 | 342 | 18 | 356 | 1.32e-96 | 295 |
| Msa1296540 | MtrunA17_Chr7g0248811 | 41.228 | 342 | 182 | 8 | 5 | 340 | 6 | 334 | 1.47e-91 | 277 |
| Msa1296540 | MtrunA17_Chr7g0248391 | 47.267 | 311 | 145 | 10 | 35 | 341 | 42 | 337 | 2.19e-89 | 272 |
| Msa1296540 | MtrunA17_Chr8g0379151 | 41.398 | 372 | 180 | 13 | 1 | 348 | 22 | 379 | 8.45e-79 | 246 |
| Msa1296540 | MtrunA17_Chr2g0283741 | 39.450 | 327 | 181 | 10 | 25 | 343 | 43 | 360 | 4.35e-75 | 236 |
| Msa1296540 | MtrunA17_Chr0c27g0493921 | 42.671 | 307 | 155 | 9 | 41 | 341 | 57 | 348 | 6.41e-73 | 230 |
| Msa1296540 | MtrunA17_Chr4g0070441 | 43.357 | 286 | 146 | 8 | 41 | 320 | 57 | 332 | 1.18e-69 | 221 |
| Msa1296540 | MtrunA17_Chr2g0283671 | 51.339 | 224 | 104 | 5 | 119 | 341 | 8 | 227 | 1.10e-68 | 215 |
| Msa1296540 | MtrunA17_Chr2g0311471 | 38.122 | 362 | 187 | 14 | 1 | 341 | 1 | 346 | 3.04e-67 | 215 |
| Msa1296540 | MtrunA17_Chr2g0311381 | 39.665 | 358 | 182 | 17 | 6 | 341 | 5 | 350 | 2.18e-66 | 213 |
| Msa1296540 | MtrunA17_Chr1g0155781 | 40.940 | 298 | 150 | 8 | 41 | 321 | 57 | 345 | 4.17e-64 | 207 |
| Msa1296540 | MtrunA17_Chr4g0035551 | 38.701 | 354 | 161 | 13 | 7 | 321 | 5 | 341 | 9.10e-63 | 204 |
| Msa1296540 | MtrunA17_Chr2g0311391 | 37.371 | 388 | 174 | 19 | 6 | 343 | 5 | 373 | 7.81e-61 | 199 |
| Msa1296540 | MtrunA17_Chr1g0199131 | 34.375 | 352 | 195 | 9 | 19 | 349 | 38 | 374 | 6.27e-58 | 192 |
| Msa1296540 | MtrunA17_Chr1g0156161 | 42.291 | 227 | 118 | 7 | 119 | 339 | 42 | 261 | 8.75e-54 | 178 |
| Msa1296540 | MtrunA17_Chr4g0036731 | 31.627 | 332 | 176 | 7 | 8 | 321 | 7 | 305 | 2.02e-46 | 160 |
| Msa1296540 | MtrunA17_Chr4g0036281 | 32.622 | 328 | 173 | 8 | 9 | 321 | 15 | 309 | 5.76e-46 | 159 |
| Msa1296540 | MtrunA17_Chr4g0037291 | 32.641 | 337 | 170 | 10 | 8 | 321 | 48 | 350 | 1.03e-45 | 160 |
| Msa1296540 | MtrunA17_Chr7g0248421 | 52.349 | 149 | 66 | 3 | 149 | 296 | 57 | 201 | 3.26e-44 | 151 |
| Msa1296540 | MtrunA17_Chr2g0283751 | 32.517 | 286 | 161 | 7 | 1 | 262 | 1 | 278 | 4.01e-44 | 154 |
| Msa1296540 | MtrunA17_Chr2g0283661 | 29.885 | 348 | 147 | 14 | 9 | 340 | 4 | 270 | 4.51e-36 | 132 |
| Msa1296540 | MtrunA17_Chr7g0248371 | 47.706 | 109 | 54 | 3 | 243 | 350 | 34 | 140 | 5.75e-31 | 115 |
| Msa1296540 | MtrunA17_Chr1g0156771 | 53.271 | 107 | 45 | 4 | 119 | 221 | 48 | 153 | 1.05e-29 | 112 |
| Msa1296540 | MtrunA17_Chr7g0271041 | 27.848 | 316 | 188 | 13 | 48 | 333 | 25 | 330 | 1.97e-28 | 113 |
| Msa1296540 | MtrunA17_Chr2g0311091 | 35.450 | 189 | 103 | 6 | 1 | 175 | 1 | 184 | 1.66e-27 | 106 |
| Msa1296540 | MtrunA17_Chr7g0271031 | 30.035 | 283 | 165 | 13 | 82 | 340 | 110 | 383 | 3.65e-25 | 105 |
| Msa1296540 | MtrunA17_Chr7g0248661 | 52.632 | 76 | 34 | 2 | 267 | 341 | 2 | 76 | 1.38e-22 | 90.1 |
| Msa1296540 | MtrunA17_Chr8g0379671 | 36.923 | 130 | 71 | 5 | 166 | 293 | 23 | 143 | 1.38e-15 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1296540 | AT5G43060.1 | 64.789 | 355 | 100 | 6 | 9 | 345 | 10 | 357 | 3.24e-165 | 469 |
| Msa1296540 | AT1G47128.1 | 61.517 | 356 | 111 | 5 | 8 | 345 | 9 | 356 | 1.96e-163 | 465 |
| Msa1296540 | AT4G36880.1 | 63.095 | 336 | 118 | 2 | 17 | 346 | 31 | 366 | 1.15e-159 | 452 |
| Msa1296540 | AT3G19390.1 | 61.318 | 349 | 121 | 6 | 1 | 342 | 5 | 346 | 1.35e-157 | 450 |
| Msa1296540 | AT3G19400.1 | 59.412 | 340 | 127 | 7 | 19 | 353 | 27 | 360 | 5.07e-144 | 412 |
| Msa1296540 | AT4G23520.1 | 54.155 | 349 | 144 | 7 | 9 | 348 | 15 | 356 | 2.55e-135 | 390 |
| Msa1296540 | AT3G48340.1 | 53.824 | 340 | 149 | 4 | 9 | 342 | 7 | 344 | 1.64e-129 | 375 |
| Msa1296540 | AT1G20850.1 | 53.145 | 318 | 145 | 2 | 25 | 342 | 41 | 354 | 7.01e-126 | 366 |
| Msa1296540 | AT4G11310.1 | 49.716 | 352 | 161 | 5 | 3 | 342 | 6 | 353 | 7.55e-122 | 356 |
| Msa1296540 | AT4G11320.2 | 48.108 | 370 | 169 | 5 | 3 | 353 | 6 | 371 | 1.07e-121 | 355 |
| Msa1296540 | AT4G11320.1 | 48.108 | 370 | 169 | 5 | 3 | 353 | 6 | 371 | 1.07e-121 | 355 |
| Msa1296540 | AT4G35350.1 | 49.704 | 338 | 157 | 4 | 13 | 342 | 21 | 353 | 1.10e-120 | 352 |
| Msa1296540 | AT5G50260.1 | 50.289 | 346 | 165 | 5 | 1 | 342 | 1 | 343 | 4.44e-120 | 351 |
| Msa1296540 | AT1G09850.1 | 49.249 | 333 | 162 | 3 | 11 | 342 | 8 | 334 | 4.90e-117 | 346 |
| Msa1296540 | AT1G06260.1 | 50.000 | 344 | 161 | 6 | 2 | 342 | 8 | 343 | 6.76e-116 | 340 |
| Msa1296540 | AT3G48350.1 | 49.280 | 347 | 168 | 6 | 1 | 342 | 1 | 344 | 1.99e-113 | 334 |
| Msa1296540 | AT5G45890.1 | 49.708 | 342 | 160 | 7 | 4 | 341 | 12 | 345 | 6.47e-113 | 332 |
| Msa1296540 | AT3G43960.1 | 50.568 | 352 | 152 | 13 | 15 | 355 | 18 | 358 | 4.38e-107 | 318 |
| Msa1296540 | AT3G19400.2 | 58.397 | 262 | 99 | 6 | 19 | 275 | 27 | 283 | 1.16e-105 | 312 |
| Msa1296540 | AT2G27420.1 | 45.714 | 350 | 178 | 8 | 1 | 341 | 1 | 347 | 2.81e-97 | 293 |
| Msa1296540 | AT2G34080.1 | 42.816 | 348 | 188 | 7 | 1 | 341 | 1 | 344 | 9.79e-94 | 283 |
| Msa1296540 | AT3G49340.1 | 42.733 | 344 | 185 | 7 | 6 | 341 | 1 | 340 | 3.23e-91 | 277 |
| Msa1296540 | AT1G29080.1 | 41.108 | 343 | 193 | 7 | 4 | 341 | 7 | 345 | 1.30e-88 | 270 |
| Msa1296540 | AT4G35350.2 | 47.601 | 271 | 129 | 4 | 13 | 275 | 21 | 286 | 1.73e-87 | 265 |
| Msa1296540 | AT1G29090.1 | 42.980 | 349 | 182 | 9 | 6 | 341 | 10 | 354 | 7.29e-87 | 266 |
| Msa1296540 | AT3G48350.2 | 45.520 | 279 | 146 | 4 | 1 | 275 | 1 | 277 | 4.65e-77 | 239 |
| Msa1296540 | AT5G60360.1 | 43.182 | 308 | 152 | 9 | 41 | 341 | 65 | 356 | 1.04e-74 | 235 |
| Msa1296540 | AT1G29110.1 | 35.777 | 341 | 196 | 6 | 10 | 341 | 7 | 333 | 7.33e-73 | 229 |
| Msa1296540 | AT5G60360.2 | 42.857 | 308 | 152 | 10 | 41 | 341 | 65 | 355 | 3.70e-72 | 228 |
| Msa1296540 | AT5G60360.3 | 43.206 | 287 | 145 | 8 | 41 | 320 | 65 | 340 | 3.34e-70 | 224 |
| Msa1296540 | AT3G45310.1 | 41.883 | 308 | 156 | 9 | 41 | 341 | 65 | 356 | 3.13e-69 | 221 |
| Msa1296540 | AT3G45310.2 | 41.558 | 308 | 156 | 10 | 41 | 341 | 65 | 355 | 1.18e-66 | 214 |
| Msa1296540 | AT4G39090.1 | 38.644 | 295 | 157 | 5 | 41 | 319 | 57 | 343 | 1.51e-62 | 204 |
| Msa1296540 | AT2G21430.1 | 36.246 | 309 | 170 | 6 | 27 | 319 | 43 | 340 | 5.40e-61 | 200 |
| Msa1296540 | AT3G54940.2 | 33.607 | 366 | 201 | 10 | 6 | 338 | 10 | 366 | 3.99e-59 | 195 |
| Msa1296540 | AT4G16190.1 | 35.962 | 317 | 175 | 9 | 22 | 321 | 45 | 350 | 7.48e-56 | 187 |
| Msa1296540 | AT3G54940.3 | 35.622 | 233 | 133 | 4 | 35 | 257 | 51 | 276 | 6.90e-42 | 147 |
| Msa1296540 | AT1G02305.1 | 29.393 | 313 | 180 | 14 | 73 | 354 | 59 | 361 | 1.15e-26 | 108 |
| Msa1296540 | AT4G01610.1 | 27.018 | 285 | 176 | 11 | 72 | 333 | 55 | 330 | 1.17e-22 | 97.8 |
| Msa1296540 | AT4G01610.2 | 26.316 | 285 | 178 | 11 | 72 | 333 | 55 | 330 | 1.30e-20 | 92.0 |
| Msa1296540 | AT1G02300.1 | 30.516 | 213 | 117 | 9 | 144 | 333 | 146 | 350 | 2.61e-16 | 79.7 |
| Msa1296540 | AT2G22160.1 | 30.851 | 94 | 60 | 1 | 51 | 144 | 10 | 98 | 4.72e-11 | 59.7 |
Find 109 sgRNAs with CRISPR-Local
Find 177 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATATCGCAACATGTATT+TGG | 0.152793 | 8_3:+56133774 | Msa1296540:CDS |
| ATTGAATTATATATGCTTAT+TGG | 0.155563 | 8_3:+56136246 | Msa1296540:three_prime_UTR |
| ATTAAAATGCTTACCCTTGT+TGG | 0.270555 | 8_3:-56135332 | None:intergenic |
| CTGAAAACGGTGTGGATTAT+TGG | 0.272055 | 8_3:+56136011 | Msa1296540:CDS |
| GGAACTCATGGGGCACAAAC+TGG | 0.305715 | 8_3:+56136041 | Msa1296540:CDS |
| GGTGTGGTTGTTGTTGGATA+TGG | 0.309222 | 8_3:+56135986 | Msa1296540:CDS |
| TTTGAATTCATCGTTGAAAA+TGG | 0.320532 | 8_3:+56135254 | Msa1296540:CDS |
| TTCCTTGATCACTTTGTCAT+TGG | 0.330785 | 8_3:+56133543 | Msa1296540:CDS |
| CATAAGGTGTATAATGGTTT+AGG | 0.340198 | 8_3:+56133634 | Msa1296540:CDS |
| TGTACTTCACAGGAAGTTGC+TGG | 0.341497 | 8_3:+56135093 | Msa1296540:intron |
| CTAAACCATTATACACCTTA+TGG | 0.348204 | 8_3:-56133633 | None:intergenic |
| TTGCTATTGAGGCCGGTGGC+CGG | 0.359010 | 8_3:+56135681 | Msa1296540:CDS |
| ACCATACTTCACTGGGTATG+AGG | 0.376443 | 8_3:-56136140 | None:intergenic |
| AATTCCACACTTTCCTGTAT+TGG | 0.376785 | 8_3:-56136107 | None:intergenic |
| CCGGTGACCGGTGGTGATCT+TGG | 0.378957 | 8_3:-56133833 | None:intergenic |
| AAACACCATAAGGTGTATAA+TGG | 0.383316 | 8_3:+56133628 | Msa1296540:CDS |
| AAAGAAGAGCAAGGATGTTA+TGG | 0.388472 | 8_3:-56133521 | None:intergenic |
| CAAATTGATATTTGATATTG+AGG | 0.396409 | 8_3:-56136317 | None:intergenic |
| TGCTATTGAGGCCGGTGGCC+GGG | 0.400604 | 8_3:+56135682 | Msa1296540:CDS |
| GGTTGCCTGTGCATGTTGAT+TGG | 0.401016 | 8_3:+56133878 | Msa1296540:CDS |
| GCCAAGGTAGTGAGCATTGA+TGG | 0.412005 | 8_3:+56135590 | Msa1296540:CDS |
| GATCATGGTGTGGTTGTTGT+TGG | 0.414909 | 8_3:+56135980 | Msa1296540:CDS |
| GAATATCGCAACATGTATTT+GGG | 0.415509 | 8_3:+56133775 | Msa1296540:CDS |
| ATAAGCATATATAATTCAAT+AGG | 0.419418 | 8_3:-56136243 | None:intergenic |
| GCCTCATACCCAGTGAAGTA+TGG | 0.426327 | 8_3:+56136139 | Msa1296540:CDS |
| CAAAATTACACATACAAAGT+AGG | 0.430615 | 8_3:+56133721 | Msa1296540:CDS |
| TTGATGCCATGGTTGGTGTT+TGG | 0.432551 | 8_3:-56133495 | None:intergenic |
| GAACTCATGGGGCACAAACT+GGG | 0.439893 | 8_3:+56136042 | Msa1296540:CDS |
| CTGCCCTCAAATCCCTTGTA+TGG | 0.445182 | 8_3:-56135302 | None:intergenic |
| TTTAACACTTGAGATATTGT+TGG | 0.455834 | 8_3:-56136216 | None:intergenic |
| GTGTTTGGCTAAGGAGAGAA+AGG | 0.464149 | 8_3:-56133480 | None:intergenic |
| TACCAACCATTCCTCGTACA+TGG | 0.470931 | 8_3:-56133605 | None:intergenic |
| GCTATAAACAAAATAGTGAC+AGG | 0.472984 | 8_3:+56135143 | Msa1296540:CDS |
| GGCTTTGCAACTCTATCAAT+CGG | 0.477377 | 8_3:+56135703 | Msa1296540:CDS |
| TTAGGCTTTGATGAACTAGT+TGG | 0.479954 | 8_3:-56133453 | None:intergenic |
| GTTGGATATGGTTCTGAAAA+CGG | 0.483288 | 8_3:+56135998 | Msa1296540:CDS |
| TATCCATACAAGGGATTTGA+GGG | 0.490268 | 8_3:+56135299 | Msa1296540:CDS |
| ATTGGTTGGTGAGGAACTCA+TGG | 0.501730 | 8_3:+56136029 | Msa1296540:CDS |
| GGCACAAACTGGGGTGAAGA+AGG | 0.502960 | 8_3:+56136052 | Msa1296540:CDS |
| ATGGTTGGTAAAACACCATA+AGG | 0.503486 | 8_3:+56133618 | Msa1296540:CDS |
| TGCCAATGACAAAGTGATCA+AGG | 0.505373 | 8_3:-56133545 | None:intergenic |
| TAAGGAGAGAAAGGGTGGTT+AGG | 0.505895 | 8_3:-56133471 | None:intergenic |
| CCATGGTTGGTGTTTGGCTA+AGG | 0.508796 | 8_3:-56133489 | None:intergenic |
| TGGTAGATGTGGAACAAACT+TGG | 0.516650 | 8_3:+56135958 | Msa1296540:CDS |
| CTATCCATACAAGGGATTTG+AGG | 0.526290 | 8_3:+56135298 | Msa1296540:CDS |
| TCCATCAATGCTCACTACCT+TGG | 0.527147 | 8_3:-56135591 | None:intergenic |
| ATTAAAAGCATACCGGTGAC+CGG | 0.528807 | 8_3:-56133845 | None:intergenic |
| GATCACTTTGTCATTGGCAA+TGG | 0.530628 | 8_3:+56133549 | Msa1296540:CDS |
| ACCTGTGAGTGTTGCTATTG+AGG | 0.533824 | 8_3:+56135670 | Msa1296540:CDS |
| AACCTCCTCGTTACTACGCA+TGG | 0.534905 | 8_3:-56133578 | None:intergenic |
| AAAATTACACATACAAAGTA+GGG | 0.535927 | 8_3:+56133722 | Msa1296540:CDS |
| TGTGATAGAGCTTTCAATGA+AGG | 0.543376 | 8_3:+56135203 | Msa1296540:CDS |
| GTGATAGAGCTTTCAATGAA+GGG | 0.544650 | 8_3:+56135204 | Msa1296540:CDS |
| TTCAATGAAGGGTGCAATGG+TGG | 0.551502 | 8_3:+56135215 | Msa1296540:CDS |
| CAAATAACAGTAGTGAAAGC+TGG | 0.551939 | 8_3:-56136342 | None:intergenic |
| GAGTTGCAAAGCCCGGCCAC+CGG | 0.552609 | 8_3:-56135693 | None:intergenic |
| GCCTCAATAGCAACACTCAC+AGG | 0.554592 | 8_3:-56135671 | None:intergenic |
| ATTGATAGAGTTGCAAAGCC+CGG | 0.557641 | 8_3:-56135700 | None:intergenic |
| GTACTTCACAGGAAGTTGCT+GGG | 0.560605 | 8_3:+56135094 | Msa1296540:intron |
| TGAACAAGACTATCCATACA+AGG | 0.565666 | 8_3:+56135289 | Msa1296540:CDS |
| GACCTCCAATCAACATGCAC+AGG | 0.565711 | 8_3:-56133883 | None:intergenic |
| GAATTCATCGTTGAAAATGG+TGG | 0.566710 | 8_3:+56135257 | Msa1296540:CDS |
| AGGGTGCAATGGTGGTCTCA+TGG | 0.567177 | 8_3:+56135223 | Msa1296540:CDS |
| ATCAAAGATCAAGGAAGTTG+TGG | 0.567766 | 8_3:+56133925 | Msa1296540:CDS |
| CCAAGATCACCACCGGTCAC+CGG | 0.568353 | 8_3:+56133833 | Msa1296540:CDS |
| ATGGTGATTGATGCCATGGT+TGG | 0.571355 | 8_3:-56133502 | None:intergenic |
| GTTGCTCGTATCAAAGATCA+AGG | 0.571746 | 8_3:+56133916 | Msa1296540:CDS |
| GGTGTATTTACTGGTAGATG+TGG | 0.575486 | 8_3:+56135947 | Msa1296540:CDS |
| AACTCATGGGGCACAAACTG+GGG | 0.578307 | 8_3:+56136043 | Msa1296540:CDS |
| TTGGTTGGTGAGGAACTCAT+GGG | 0.579060 | 8_3:+56136030 | Msa1296540:CDS |
| TGCCTGTGCATGTTGATTGG+AGG | 0.581463 | 8_3:+56133881 | Msa1296540:CDS |
| ACTTGAGATATTGTTGGTGG+TGG | 0.582028 | 8_3:-56136210 | None:intergenic |
| GACCATGTACGAGGAATGGT+TGG | 0.582463 | 8_3:+56133603 | Msa1296540:CDS |
| GTGAGTGTTGCTATTGAGGC+CGG | 0.589717 | 8_3:+56135674 | Msa1296540:CDS |
| AAGACCAATACAGGAAAGTG+TGG | 0.590273 | 8_3:+56136103 | Msa1296540:CDS |
| TGTTATGGTGATTGATGCCA+TGG | 0.590826 | 8_3:-56133506 | None:intergenic |
| AACACTTGAGATATTGTTGG+TGG | 0.593791 | 8_3:-56136213 | None:intergenic |
| TTGGCTAAGGAGAGAAAGGG+TGG | 0.596890 | 8_3:-56133476 | None:intergenic |
| AGGGCAGATGCGATCCAACA+AGG | 0.598214 | 8_3:+56135318 | Msa1296540:CDS |
| TGTTTGGCTAAGGAGAGAAA+GGG | 0.599550 | 8_3:-56133479 | None:intergenic |
| CACCGGAATTAAAAGCATAC+CGG | 0.600520 | 8_3:-56133852 | None:intergenic |
| GCTTTCAATGAAGGGTGCAA+TGG | 0.603342 | 8_3:+56135212 | Msa1296540:CDS |
| ATGCACAGGCAACCGATCAC+CGG | 0.604071 | 8_3:-56133869 | None:intergenic |
| TTATGACCATGTACGAGGAA+TGG | 0.605270 | 8_3:+56133599 | Msa1296540:CDS |
| GTTTAGGAGAGAAAGATCGA+AGG | 0.607500 | 8_3:+56133650 | Msa1296540:CDS |
| TGTGGAACAAACTTGGATCA+TGG | 0.612535 | 8_3:+56135965 | Msa1296540:CDS |
| GATCAAGGAAAAGAAGAGCA+AGG | 0.613129 | 8_3:-56133530 | None:intergenic |
| CATGTTGATTGGAGGTCGAA+AGG | 0.619027 | 8_3:+56133889 | Msa1296540:CDS |
| GAGGAGTGATGCCAAACGTA+GGG | 0.622581 | 8_3:+56133801 | Msa1296540:CDS |
| CACGTCCATGCGTAGTAACG+AGG | 0.636349 | 8_3:+56133573 | Msa1296540:CDS |
| ATGAAAACCAAGATCACCAC+CGG | 0.640415 | 8_3:+56133826 | Msa1296540:CDS |
| GGGCAGATGCGATCCAACAA+GGG | 0.645390 | 8_3:+56135319 | Msa1296540:CDS |
| AAACGGTGTGGATTATTGGT+TGG | 0.646909 | 8_3:+56136015 | Msa1296540:CDS |
| CTATAAACAAAATAGTGACA+GGG | 0.655594 | 8_3:+56135144 | Msa1296540:CDS |
| AGTGTTGCTATTGAGGCCGG+TGG | 0.658752 | 8_3:+56135677 | Msa1296540:CDS |
| CGAGGAGTGATGCCAAACGT+AGG | 0.659483 | 8_3:+56133800 | Msa1296540:CDS |
| CCTTAGCCAAACACCAACCA+TGG | 0.661974 | 8_3:+56133489 | Msa1296540:exon |
| GTGTGGATTATTGGTTGGTG+AGG | 0.664128 | 8_3:+56136020 | Msa1296540:CDS |
| AAAAGCATACCGGTGACCGG+TGG | 0.684937 | 8_3:-56133842 | None:intergenic |
| AACAAACTTGGATCATGGTG+TGG | 0.692394 | 8_3:+56135970 | Msa1296540:CDS |
| GAACAAGACTATCCATACAA+GGG | 0.692415 | 8_3:+56135290 | Msa1296540:CDS |
| GGAGGTTATGACCATGTACG+AGG | 0.695577 | 8_3:+56133594 | Msa1296540:CDS |
| GCAACATGTATTTGGGCACG+AGG | 0.696732 | 8_3:+56133782 | Msa1296540:CDS |
| TTTGTTTATAGCTTCCACTG+TGG | 0.711165 | 8_3:-56135132 | None:intergenic |
| ATATGGTTCTGAAAACGGTG+TGG | 0.711541 | 8_3:+56136003 | Msa1296540:CDS |
| TGGTTGGTGAGGAACTCATG+GGG | 0.718625 | 8_3:+56136031 | Msa1296540:CDS |
| GTCCATGCGTAGTAACGAGG+AGG | 0.719075 | 8_3:+56133576 | Msa1296540:CDS |
| GTTTGCTGATATGACTAACG+AGG | 0.737032 | 8_3:+56133753 | Msa1296540:CDS |
| GTTCTCAACAATAGCCACAG+TGG | 0.769143 | 8_3:+56135118 | Msa1296540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTCTTAATAAACTATTT+TGG | - | chr8_3:56134333-56134352 | None:intergenic | 10.0% |
| !! | AGTTTATTAAGAATATAAAT+AGG | + | chr8_3:56134368-56134387 | Msa1296540:intron | 10.0% |
| !!! | TGATCATTAATTTTATTTTT+AGG | + | chr8_3:56134870-56134889 | Msa1296540:intron | 10.0% |
| !! | TCAATATATATATTAGTATA+AGG | - | chr8_3:56135373-56135392 | None:intergenic | 10.0% |
| !! | GATAATATTAAAAATAACTA+TGG | + | chr8_3:56135418-56135437 | Msa1296540:intron | 10.0% |
| !!! | ATTGTTTTTCTAATATTATA+TGG | + | chr8_3:56135511-56135530 | Msa1296540:intron | 10.0% |
| !!! | TTGTTTTTCTAATATTATAT+GGG | + | chr8_3:56135512-56135531 | Msa1296540:intron | 10.0% |
| !!! | TTTTTTTAGAATACATTATA+TGG | + | chr8_3:56135543-56135562 | Msa1296540:intron | 10.0% |
| !!! | TTTTTTAGAATACATTATAT+GGG | + | chr8_3:56135544-56135563 | Msa1296540:intron | 10.0% |
| !!! | AACTATTATAAATTTTTTCA+GGG | + | chr8_3:56135926-56135945 | Msa1296540:intron | 10.0% |
| !!! | GAAATTTTTAAGGATAATTT+AGG | + | chr8_3:56133676-56133695 | Msa1296540:CDS | 15.0% |
| !!! | AAAAAAGTAACCTTTTTTTT+AGG | - | chr8_3:56134019-56134038 | None:intergenic | 15.0% |
| !!! | AAAAGGTTACTTTTTTTTTT+TGG | + | chr8_3:56134023-56134042 | Msa1296540:intron | 15.0% |
| !!! | TTTTTTTGGTACAAAAAAAA+AGG | + | chr8_3:56134037-56134056 | Msa1296540:intron | 15.0% |
| !! | AATTTAAATAAAGTCCTTAA+GGG | - | chr8_3:56134071-56134090 | None:intergenic | 15.0% |
| !! | AAATTTAAATAAAGTCCTTA+AGG | - | chr8_3:56134072-56134091 | None:intergenic | 15.0% |
| !! | AAAAGGATTTAAACATATAT+CGG | - | chr8_3:56134116-56134135 | None:intergenic | 15.0% |
| !! | CAAAAAGAACTATATAAAAA+AGG | - | chr8_3:56134133-56134152 | None:intergenic | 15.0% |
| !! | AAGAACTATATAAAAGATAA+AGG | - | chr8_3:56134178-56134197 | None:intergenic | 15.0% |
| !!! | TTTTTTTTAAATACTTTGAG+AGG | + | chr8_3:56134292-56134311 | Msa1296540:intron | 15.0% |
| !!! | TTTTTTTTTTTCTTTCTATC+TGG | + | chr8_3:56134603-56134622 | Msa1296540:intron | 15.0% |
| !!! | AATATTTTTACTCAATTACA+TGG | + | chr8_3:56134667-56134686 | Msa1296540:intron | 15.0% |
| !! | CTTATTAATTATTCATACTT+TGG | + | chr8_3:56134907-56134926 | Msa1296540:intron | 15.0% |
| !! | TTTAGCACAAATAAATTAAA+GGG | - | chr8_3:56134935-56134954 | None:intergenic | 15.0% |
| !! | AACAAACTTTGATTAAAAAT+TGG | + | chr8_3:56134953-56134972 | Msa1296540:intron | 15.0% |
| !!! | GAACTATTATAAATTTTTTC+AGG | + | chr8_3:56135925-56135944 | Msa1296540:intron | 15.0% |
| !! | ATAAGCATATATAATTCAAT+AGG | - | chr8_3:56136246-56136265 | None:intergenic | 15.0% |
| !! | ATTGAATTATATATGCTTAT+TGG | + | chr8_3:56136246-56136265 | Msa1296540:three_prime_UTR | 15.0% |
| !! | AAAATTACACATACAAAGTA+GGG | + | chr8_3:56133722-56133741 | Msa1296540:CDS | 20.0% |
| !! | TATATAATAATAGATGCAAG+TGG | - | chr8_3:56134236-56134255 | None:intergenic | 20.0% |
| !!! | GGAATTTATGTATATACTTT+TGG | - | chr8_3:56134419-56134438 | None:intergenic | 20.0% |
| !! | GTTTAGCACAAATAAATTAA+AGG | - | chr8_3:56134936-56134955 | None:intergenic | 20.0% |
| !! | GATTAAAAATTGGTAAGTAA+TGG | + | chr8_3:56134963-56134982 | Msa1296540:intron | 20.0% |
| !! | GTTATTTGATCAAAATTAGA+CGG | + | chr8_3:56135765-56135784 | Msa1296540:intron | 20.0% |
| !! | CAAATTGATATTTGATATTG+AGG | - | chr8_3:56136320-56136339 | None:intergenic | 20.0% |
| !!! | TCGAAGGTTTGAAATTTTTA+AGG | + | chr8_3:56133666-56133685 | Msa1296540:CDS | 25.0% |
| ! | CAAAATTACACATACAAAGT+AGG | + | chr8_3:56133721-56133740 | Msa1296540:CDS | 25.0% |
| ! | AAAGGAAACTGCAAAATTAT+AGG | - | chr8_3:56133970-56133989 | None:intergenic | 25.0% |
| !!! | ACTTTTGGTAATTGTACTTT+TGG | - | chr8_3:56134404-56134423 | None:intergenic | 25.0% |
| ! | CACTCATATTCTAAATAGAT+TGG | - | chr8_3:56134440-56134459 | None:intergenic | 25.0% |
| !!! | AAGCTTTAGATAAGACTTTT+TGG | + | chr8_3:56134830-56134849 | Msa1296540:intron | 25.0% |
| ! | AAAAATTGGTAAGTAATGGT+AGG | + | chr8_3:56134967-56134986 | Msa1296540:intron | 25.0% |
| ! | AATAGTCCAATATTTAACTG+AGG | - | chr8_3:56135027-56135046 | None:intergenic | 25.0% |
| ! | TCAGTTAAATATTGGACTAT+TGG | + | chr8_3:56135026-56135045 | Msa1296540:intron | 25.0% |
| ! | CTATAAACAAAATAGTGACA+GGG | + | chr8_3:56135144-56135163 | Msa1296540:CDS | 25.0% |
| !! | ATTTTCAACGATGAATTCAA+AGG | - | chr8_3:56135255-56135274 | None:intergenic | 25.0% |
| ! | TTTGAATTCATCGTTGAAAA+TGG | + | chr8_3:56135254-56135273 | Msa1296540:CDS | 25.0% |
| !! | AATGCATTTTCATTATAAGC+TGG | - | chr8_3:56135629-56135648 | None:intergenic | 25.0% |
| !!! | TCTTATAATTTTAGAAGTCG+AGG | - | chr8_3:56135802-56135821 | None:intergenic | 25.0% |
| !! | GCTTCAAGCTTTATAAAATT+TGG | - | chr8_3:56135894-56135913 | None:intergenic | 25.0% |
| ! | TTTAACACTTGAGATATTGT+TGG | - | chr8_3:56136219-56136238 | None:intergenic | 25.0% |
| AAACACCATAAGGTGTATAA+TGG | + | chr8_3:56133628-56133647 | Msa1296540:CDS | 30.0% | |
| CTAAACCATTATACACCTTA+TGG | - | chr8_3:56133636-56133655 | None:intergenic | 30.0% | |
| CATAAGGTGTATAATGGTTT+AGG | + | chr8_3:56133634-56133653 | Msa1296540:CDS | 30.0% | |
| GAATATCGCAACATGTATTT+GGG | + | chr8_3:56133775-56133794 | Msa1296540:CDS | 30.0% | |
| !! | AGTTGTGGTAAGTTTGTTTT+AGG | + | chr8_3:56133940-56133959 | Msa1296540:intron | 30.0% |
| !!! | GTTGTGGTAAGTTTGTTTTA+GGG | + | chr8_3:56133941-56133960 | Msa1296540:intron | 30.0% |
| ! | TTTTGCAGTTTCCTTTGTTA+AGG | + | chr8_3:56133974-56133993 | Msa1296540:intron | 30.0% |
| AAAAGGTTACTTATCCCTTA+AGG | + | chr8_3:56134054-56134073 | Msa1296540:intron | 30.0% | |
| !! | TTGGTAATTGTACTTTTGGA+CGG | - | chr8_3:56134400-56134419 | None:intergenic | 30.0% |
| AAATTAAGATCACGTGTTCA+TGG | - | chr8_3:56134753-56134772 | None:intergenic | 30.0% | |
| GTTTGACCTCAGTTAAATAT+TGG | + | chr8_3:56135018-56135037 | Msa1296540:intron | 30.0% | |
| ! | TACATTTTCTTGTACTTCAC+AGG | + | chr8_3:56135083-56135102 | Msa1296540:intron | 30.0% |
| GCTATAAACAAAATAGTGAC+AGG | + | chr8_3:56135143-56135162 | Msa1296540:CDS | 30.0% | |
| ATTAAAATGCTTACCCTTGT+TGG | - | chr8_3:56135335-56135354 | None:intergenic | 30.0% | |
| TTAGAAGTCGAGGTTAAATA+TGG | - | chr8_3:56135792-56135811 | None:intergenic | 30.0% | |
| !!! | TTTTTTCAGGGTGTATTTAC+TGG | + | chr8_3:56135938-56135957 | Msa1296540:intron | 30.0% |
| AATGTGAAAAAGACCAATAC+AGG | + | chr8_3:56136094-56136113 | Msa1296540:CDS | 30.0% | |
| AAAGAAGAGCAAGGATGTTA+TGG | - | chr8_3:56133524-56133543 | None:intergenic | 35.0% | |
| TTCCTTGATCACTTTGTCAT+TGG | + | chr8_3:56133543-56133562 | Msa1296540:CDS | 35.0% | |
| !! | ATGGTTGGTAAAACACCATA+AGG | + | chr8_3:56133618-56133637 | Msa1296540:CDS | 35.0% |
| GGAATATCGCAACATGTATT+TGG | + | chr8_3:56133774-56133793 | Msa1296540:CDS | 35.0% | |
| !! | ATGCTTTTAATTCCGGTGAT+CGG | + | chr8_3:56133857-56133876 | Msa1296540:CDS | 35.0% |
| ATCAAAGATCAAGGAAGTTG+TGG | + | chr8_3:56133925-56133944 | Msa1296540:CDS | 35.0% | |
| CAGTTTCCTTTGTTAAGGTT+TGG | + | chr8_3:56133979-56133998 | Msa1296540:intron | 35.0% | |
| ACGTAACCAAACCTTAACAA+AGG | - | chr8_3:56133988-56134007 | None:intergenic | 35.0% | |
| ! | GTTAAGGTTTGGTTACGTAT+CGG | + | chr8_3:56133990-56134009 | Msa1296540:intron | 35.0% |
| GTATCGGATGCCTAAAAAAA+AGG | + | chr8_3:56134006-56134025 | Msa1296540:intron | 35.0% | |
| ! | ACTTTCTCTTTTCCCATCAA+AGG | + | chr8_3:56134210-56134229 | Msa1296540:intron | 35.0% |
| ATTGGTAAGTAATGGTAGGT+TGG | + | chr8_3:56134971-56134990 | Msa1296540:intron | 35.0% | |
| TTTGTTTATAGCTTCCACTG+TGG | - | chr8_3:56135135-56135154 | None:intergenic | 35.0% | |
| TGTGATAGAGCTTTCAATGA+AGG | + | chr8_3:56135203-56135222 | Msa1296540:CDS | 35.0% | |
| GTGATAGAGCTTTCAATGAA+GGG | + | chr8_3:56135204-56135223 | Msa1296540:CDS | 35.0% | |
| GAATTCATCGTTGAAAATGG+TGG | + | chr8_3:56135257-56135276 | Msa1296540:CDS | 35.0% | |
| TGAACAAGACTATCCATACA+AGG | + | chr8_3:56135289-56135308 | Msa1296540:CDS | 35.0% | |
| GAACAAGACTATCCATACAA+GGG | + | chr8_3:56135290-56135309 | Msa1296540:CDS | 35.0% | |
| TATCCATACAAGGGATTTGA+GGG | + | chr8_3:56135299-56135318 | Msa1296540:CDS | 35.0% | |
| !! | GTTGGATATGGTTCTGAAAA+CGG | + | chr8_3:56135998-56136017 | Msa1296540:CDS | 35.0% |
| AATTCCACACTTTCCTGTAT+TGG | - | chr8_3:56136110-56136129 | None:intergenic | 35.0% | |
| !! | AGTTTTGACCATACTTCACT+GGG | - | chr8_3:56136150-56136169 | None:intergenic | 35.0% |
| AACACTTGAGATATTGTTGG+TGG | - | chr8_3:56136216-56136235 | None:intergenic | 35.0% | |
| CAAATAACAGTAGTGAAAGC+TGG | - | chr8_3:56136345-56136364 | None:intergenic | 35.0% | |
| TGTTTGGCTAAGGAGAGAAA+GGG | - | chr8_3:56133482-56133501 | None:intergenic | 40.0% | |
| TGTTATGGTGATTGATGCCA+TGG | - | chr8_3:56133509-56133528 | None:intergenic | 40.0% | |
| GATCAAGGAAAAGAAGAGCA+AGG | - | chr8_3:56133533-56133552 | None:intergenic | 40.0% | |
| TGCCAATGACAAAGTGATCA+AGG | - | chr8_3:56133548-56133567 | None:intergenic | 40.0% | |
| GATCACTTTGTCATTGGCAA+TGG | + | chr8_3:56133549-56133568 | Msa1296540:CDS | 40.0% | |
| TTATGACCATGTACGAGGAA+TGG | + | chr8_3:56133599-56133618 | Msa1296540:CDS | 40.0% | |
| GTTTAGGAGAGAAAGATCGA+AGG | + | chr8_3:56133650-56133669 | Msa1296540:CDS | 40.0% | |
| ! | GTTTGCTGATATGACTAACG+AGG | + | chr8_3:56133753-56133772 | Msa1296540:CDS | 40.0% |
| ! | GGTTTTCATAACCCTACGTT+TGG | - | chr8_3:56133815-56133834 | None:intergenic | 40.0% |
| ATGAAAACCAAGATCACCAC+CGG | + | chr8_3:56133826-56133845 | Msa1296540:CDS | 40.0% | |
| ! | ATTAAAAGCATACCGGTGAC+CGG | - | chr8_3:56133848-56133867 | None:intergenic | 40.0% |
| !! | CACCGGTATGCTTTTAATTC+CGG | + | chr8_3:56133850-56133869 | Msa1296540:CDS | 40.0% |
| ! | CACCGGAATTAAAAGCATAC+CGG | - | chr8_3:56133855-56133874 | None:intergenic | 40.0% |
| GTTGCTCGTATCAAAGATCA+AGG | + | chr8_3:56133916-56133935 | Msa1296540:CDS | 40.0% | |
| CTATCCATACAAGGGATTTG+AGG | + | chr8_3:56135298-56135317 | Msa1296540:CDS | 40.0% | |
| AATGCTGCAGAAAAATGCCA+AGG | + | chr8_3:56135574-56135593 | Msa1296540:intron | 40.0% | |
| ATTGATAGAGTTGCAAAGCC+CGG | - | chr8_3:56135703-56135722 | None:intergenic | 40.0% | |
| GGCTTTGCAACTCTATCAAT+CGG | + | chr8_3:56135703-56135722 | Msa1296540:CDS | 40.0% | |
| GGTGTATTTACTGGTAGATG+TGG | + | chr8_3:56135947-56135966 | Msa1296540:CDS | 40.0% | |
| TGGTAGATGTGGAACAAACT+TGG | + | chr8_3:56135958-56135977 | Msa1296540:CDS | 40.0% | |
| TGTGGAACAAACTTGGATCA+TGG | + | chr8_3:56135965-56135984 | Msa1296540:CDS | 40.0% | |
| AACAAACTTGGATCATGGTG+TGG | + | chr8_3:56135970-56135989 | Msa1296540:CDS | 40.0% | |
| !! | ATATGGTTCTGAAAACGGTG+TGG | + | chr8_3:56136003-56136022 | Msa1296540:CDS | 40.0% |
| ! | CTGAAAACGGTGTGGATTAT+TGG | + | chr8_3:56136011-56136030 | Msa1296540:CDS | 40.0% |
| ! | AAACGGTGTGGATTATTGGT+TGG | + | chr8_3:56136015-56136034 | Msa1296540:CDS | 40.0% |
| AAGACCAATACAGGAAAGTG+TGG | + | chr8_3:56136103-56136122 | Msa1296540:CDS | 40.0% | |
| !! | GAGTTTTGACCATACTTCAC+TGG | - | chr8_3:56136151-56136170 | None:intergenic | 40.0% |
| ! | ACTTGAGATATTGTTGGTGG+TGG | - | chr8_3:56136213-56136232 | None:intergenic | 40.0% |
| TAAGGAGAGAAAGGGTGGTT+AGG | - | chr8_3:56133474-56133493 | None:intergenic | 45.0% | |
| GTGTTTGGCTAAGGAGAGAA+AGG | - | chr8_3:56133483-56133502 | None:intergenic | 45.0% | |
| ! | TTGATGCCATGGTTGGTGTT+TGG | - | chr8_3:56133498-56133517 | None:intergenic | 45.0% |
| ATGGTGATTGATGCCATGGT+TGG | - | chr8_3:56133505-56133524 | None:intergenic | 45.0% | |
| TACCAACCATTCCTCGTACA+TGG | - | chr8_3:56133608-56133627 | None:intergenic | 45.0% | |
| ! | CATGTTGATTGGAGGTCGAA+AGG | + | chr8_3:56133889-56133908 | Msa1296540:CDS | 45.0% |
| AGATGCAAGTGGCCTTTGAT+GGG | - | chr8_3:56134225-56134244 | None:intergenic | 45.0% | |
| TAGATGCAAGTGGCCTTTGA+TGG | - | chr8_3:56134226-56134245 | None:intergenic | 45.0% | |
| TGTACTTCACAGGAAGTTGC+TGG | + | chr8_3:56135093-56135112 | Msa1296540:intron | 45.0% | |
| GTACTTCACAGGAAGTTGCT+GGG | + | chr8_3:56135094-56135113 | Msa1296540:intron | 45.0% | |
| GTTCTCAACAATAGCCACAG+TGG | + | chr8_3:56135118-56135137 | Msa1296540:CDS | 45.0% | |
| ! | GCTTTCAATGAAGGGTGCAA+TGG | + | chr8_3:56135212-56135231 | Msa1296540:CDS | 45.0% |
| ! | TTCAATGAAGGGTGCAATGG+TGG | + | chr8_3:56135215-56135234 | Msa1296540:CDS | 45.0% |
| TCCATCAATGCTCACTACCT+TGG | - | chr8_3:56135594-56135613 | None:intergenic | 45.0% | |
| ! | ACCTGTGAGTGTTGCTATTG+AGG | + | chr8_3:56135670-56135689 | Msa1296540:CDS | 45.0% |
| GATCATGGTGTGGTTGTTGT+TGG | + | chr8_3:56135980-56135999 | Msa1296540:CDS | 45.0% | |
| ! | GGTGTGGTTGTTGTTGGATA+TGG | + | chr8_3:56135986-56136005 | Msa1296540:CDS | 45.0% |
| ! | GTGTGGATTATTGGTTGGTG+AGG | + | chr8_3:56136020-56136039 | Msa1296540:CDS | 45.0% |
| !! | ATTGGTTGGTGAGGAACTCA+TGG | + | chr8_3:56136029-56136048 | Msa1296540:CDS | 45.0% |
| !! | TTGGTTGGTGAGGAACTCAT+GGG | + | chr8_3:56136030-56136049 | Msa1296540:CDS | 45.0% |
| ACCATACTTCACTGGGTATG+AGG | - | chr8_3:56136143-56136162 | None:intergenic | 45.0% | |
| !!! | TAAATACATATTTTAAAATT+TGG | - | chr8_3:56135825-56135844 | None:intergenic | 5.0% |
| TTGGCTAAGGAGAGAAAGGG+TGG | - | chr8_3:56133479-56133498 | None:intergenic | 50.0% | |
| ! | CCATGGTTGGTGTTTGGCTA+AGG | - | chr8_3:56133492-56133511 | None:intergenic | 50.0% |
| CCTTAGCCAAACACCAACCA+TGG | + | chr8_3:56133489-56133508 | Msa1296540:exon | 50.0% | |
| AACCTCCTCGTTACTACGCA+TGG | - | chr8_3:56133581-56133600 | None:intergenic | 50.0% | |
| GGAGGTTATGACCATGTACG+AGG | + | chr8_3:56133594-56133613 | Msa1296540:CDS | 50.0% | |
| GACCATGTACGAGGAATGGT+TGG | + | chr8_3:56133603-56133622 | Msa1296540:CDS | 50.0% | |
| GCAACATGTATTTGGGCACG+AGG | + | chr8_3:56133782-56133801 | Msa1296540:CDS | 50.0% | |
| GAGGAGTGATGCCAAACGTA+GGG | + | chr8_3:56133801-56133820 | Msa1296540:CDS | 50.0% | |
| GGTTGCCTGTGCATGTTGAT+TGG | + | chr8_3:56133878-56133897 | Msa1296540:CDS | 50.0% | |
| ! | TGCCTGTGCATGTTGATTGG+AGG | + | chr8_3:56133881-56133900 | Msa1296540:CDS | 50.0% |
| GACCTCCAATCAACATGCAC+AGG | - | chr8_3:56133886-56133905 | None:intergenic | 50.0% | |
| CTGCCCTCAAATCCCTTGTA+TGG | - | chr8_3:56135305-56135324 | None:intergenic | 50.0% | |
| !! | GCCAAGGTAGTGAGCATTGA+TGG | + | chr8_3:56135590-56135609 | Msa1296540:CDS | 50.0% |
| GCCTCAATAGCAACACTCAC+AGG | - | chr8_3:56135674-56135693 | None:intergenic | 50.0% | |
| ! | GTGAGTGTTGCTATTGAGGC+CGG | + | chr8_3:56135674-56135693 | Msa1296540:CDS | 50.0% |
| !! | TGGTTGGTGAGGAACTCATG+GGG | + | chr8_3:56136031-56136050 | Msa1296540:CDS | 50.0% |
| GAACTCATGGGGCACAAACT+GGG | + | chr8_3:56136042-56136061 | Msa1296540:CDS | 50.0% | |
| AACTCATGGGGCACAAACTG+GGG | + | chr8_3:56136043-56136062 | Msa1296540:CDS | 50.0% | |
| GCCTCATACCCAGTGAAGTA+TGG | + | chr8_3:56136139-56136158 | Msa1296540:CDS | 50.0% | |
| CACGTCCATGCGTAGTAACG+AGG | + | chr8_3:56133573-56133592 | Msa1296540:CDS | 55.0% | |
| GTCCATGCGTAGTAACGAGG+AGG | + | chr8_3:56133576-56133595 | Msa1296540:CDS | 55.0% | |
| CGAGGAGTGATGCCAAACGT+AGG | + | chr8_3:56133800-56133819 | Msa1296540:CDS | 55.0% | |
| ! | AAAAGCATACCGGTGACCGG+TGG | - | chr8_3:56133845-56133864 | None:intergenic | 55.0% |
| ATGCACAGGCAACCGATCAC+CGG | - | chr8_3:56133872-56133891 | None:intergenic | 55.0% | |
| AGGGTGCAATGGTGGTCTCA+TGG | + | chr8_3:56135223-56135242 | Msa1296540:CDS | 55.0% | |
| AGGGCAGATGCGATCCAACA+AGG | + | chr8_3:56135318-56135337 | Msa1296540:CDS | 55.0% | |
| GGGCAGATGCGATCCAACAA+GGG | + | chr8_3:56135319-56135338 | Msa1296540:CDS | 55.0% | |
| ! | AGTGTTGCTATTGAGGCCGG+TGG | + | chr8_3:56135677-56135696 | Msa1296540:CDS | 55.0% |
| GGAACTCATGGGGCACAAAC+TGG | + | chr8_3:56136041-56136060 | Msa1296540:CDS | 55.0% | |
| GGCACAAACTGGGGTGAAGA+AGG | + | chr8_3:56136052-56136071 | Msa1296540:CDS | 55.0% | |
| CCAAGATCACCACCGGTCAC+CGG | + | chr8_3:56133833-56133852 | Msa1296540:CDS | 60.0% | |
| ! | TTGCTATTGAGGCCGGTGGC+CGG | + | chr8_3:56135681-56135700 | Msa1296540:CDS | 60.0% |
| CCGGTGACCGGTGGTGATCT+TGG | - | chr8_3:56133836-56133855 | None:intergenic | 65.0% | |
| TGCTATTGAGGCCGGTGGCC+GGG | + | chr8_3:56135682-56135701 | Msa1296540:CDS | 65.0% | |
| GAGTTGCAAAGCCCGGCCAC+CGG | - | chr8_3:56135696-56135715 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_3 | gene | 56133455 | 56136409 | 56133455 | ID=Msa1296540;Name=Msa1296540 |
| chr8_3 | mRNA | 56133455 | 56136409 | 56133455 | ID=Msa1296540-mRNA-1;Parent=Msa1296540;Name=Msa1296540-mRNA-1;_AED=0.02;_eAED=0.02;_QI=53|1|1|1|1|1|4|211|355 |
| chr8_3 | exon | 56133455 | 56133946 | 56133455 | ID=Msa1296540-mRNA-1:exon:16080;Parent=Msa1296540-mRNA-1 |
| chr8_3 | exon | 56135105 | 56135340 | 56135105 | ID=Msa1296540-mRNA-1:exon:16081;Parent=Msa1296540-mRNA-1 |
| chr8_3 | exon | 56135584 | 56135724 | 56135584 | ID=Msa1296540-mRNA-1:exon:16082;Parent=Msa1296540-mRNA-1 |
| chr8_3 | exon | 56135947 | 56136409 | 56135947 | ID=Msa1296540-mRNA-1:exon:16083;Parent=Msa1296540-mRNA-1 |
| chr8_3 | five_prime_UTR | 56133455 | 56133507 | 56133455 | ID=Msa1296540-mRNA-1:five_prime_utr;Parent=Msa1296540-mRNA-1 |
| chr8_3 | CDS | 56133508 | 56133946 | 56133508 | ID=Msa1296540-mRNA-1:cds;Parent=Msa1296540-mRNA-1 |
| chr8_3 | CDS | 56135105 | 56135340 | 56135105 | ID=Msa1296540-mRNA-1:cds;Parent=Msa1296540-mRNA-1 |
| chr8_3 | CDS | 56135584 | 56135724 | 56135584 | ID=Msa1296540-mRNA-1:cds;Parent=Msa1296540-mRNA-1 |
| chr8_3 | CDS | 56135947 | 56136198 | 56135947 | ID=Msa1296540-mRNA-1:cds;Parent=Msa1296540-mRNA-1 |
| chr8_3 | three_prime_UTR | 56136199 | 56136409 | 56136199 | ID=Msa1296540-mRNA-1:three_prime_utr;Parent=Msa1296540-mRNA-1 |
| Gene Sequence |
| Protein sequence |