Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1196130 | XP_013457448.1 | 96.100 | 359 | 10 | 1 | 1 | 355 | 1 | 359 | 0.0 | 716 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1196130 | sp|Q9FMH8|RD21B_ARATH | 64.789 | 355 | 100 | 6 | 9 | 345 | 10 | 357 | 3.80e-164 | 469 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1196130 | A0A072UNT0 | 96.100 | 359 | 10 | 1 | 1 | 355 | 1 | 359 | 0.0 | 716 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0063940 | Msa1196130 | 0.808533 | 2.955458e-50 | -8.615850e-47 |
| Msa0792030 | Msa1196130 | 0.828333 | 9.530735e-55 | -8.615850e-47 |
| Msa0355080 | Msa1196130 | -0.819811 | 9.546046e-53 | -8.615850e-47 |
| Msa1196130 | Msa1251410 | 0.805255 | 1.457913e-49 | -8.615850e-47 |
| Msa1196130 | Msa1296540 | 0.862331 | 5.464902e-64 | -8.615850e-47 |
| Msa1196130 | Msa1417760 | 0.810041 | 1.403971e-50 | -8.615850e-47 |
| Msa0526150 | Msa1196130 | 0.814128 | 1.804026e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1196130 | MtrunA17_Chr4g0053311 | 96.100 | 359 | 10 | 1 | 1 | 355 | 1 | 359 | 0.0 | 716 |
| Msa1196130 | MtrunA17_Chr3g0134231 | 64.246 | 358 | 113 | 2 | 3 | 345 | 8 | 365 | 3.38e-172 | 487 |
| Msa1196130 | MtrunA17_Chr1g0208261 | 66.964 | 336 | 107 | 3 | 12 | 346 | 68 | 400 | 4.13e-168 | 478 |
| Msa1196130 | MtrunA17_Chr1g0153011 | 61.560 | 359 | 105 | 2 | 2 | 346 | 8 | 347 | 9.63e-163 | 462 |
| Msa1196130 | MtrunA17_Chr3g0116551 | 50.275 | 364 | 162 | 7 | 4 | 354 | 1 | 358 | 2.10e-124 | 362 |
| Msa1196130 | MtrunA17_Chr3g0144281 | 49.128 | 344 | 164 | 4 | 4 | 342 | 11 | 348 | 2.07e-122 | 356 |
| Msa1196130 | MtrunA17_Chr4g0041061 | 50.000 | 342 | 159 | 8 | 5 | 341 | 10 | 344 | 8.54e-119 | 347 |
| Msa1196130 | MtrunA17_Chr4g0058081 | 49.284 | 349 | 162 | 7 | 4 | 342 | 1 | 344 | 2.12e-117 | 344 |
| Msa1196130 | MtrunA17_Chr4g0040881 | 51.515 | 330 | 146 | 8 | 19 | 341 | 22 | 344 | 3.75e-117 | 343 |
| Msa1196130 | MtrunA17_Chr5g0405751 | 48.824 | 340 | 164 | 6 | 6 | 341 | 10 | 343 | 6.80e-116 | 340 |
| Msa1196130 | MtrunA17_Chr4g0041081 | 50.932 | 322 | 147 | 7 | 24 | 341 | 30 | 344 | 1.04e-115 | 339 |
| Msa1196130 | MtrunA17_Chr2g0325121 | 47.813 | 343 | 167 | 5 | 3 | 343 | 6 | 338 | 6.82e-115 | 337 |
| Msa1196130 | MtrunA17_Chr4g0024411 | 49.693 | 326 | 148 | 6 | 23 | 341 | 26 | 342 | 2.17e-114 | 336 |
| Msa1196130 | MtrunA17_Chr4g0060251 | 49.422 | 346 | 157 | 9 | 3 | 341 | 10 | 344 | 7.04e-114 | 334 |
| Msa1196130 | MtrunA17_Chr3g0142071 | 50.637 | 314 | 152 | 3 | 30 | 342 | 45 | 356 | 1.31e-112 | 335 |
| Msa1196130 | MtrunA17_Chr2g0315491 | 49.263 | 339 | 161 | 6 | 6 | 341 | 10 | 340 | 6.67e-112 | 329 |
| Msa1196130 | MtrunA17_Chr4g0041481 | 51.133 | 309 | 140 | 6 | 35 | 341 | 40 | 339 | 2.69e-111 | 328 |
| Msa1196130 | MtrunA17_Chr4g0040851 | 47.025 | 353 | 166 | 7 | 1 | 341 | 16 | 359 | 5.72e-111 | 328 |
| Msa1196130 | MtrunA17_Chr4g0041521 | 48.607 | 323 | 155 | 6 | 21 | 341 | 26 | 339 | 8.66e-110 | 324 |
| Msa1196130 | MtrunA17_Chr2g0319991 | 45.536 | 336 | 175 | 5 | 9 | 341 | 13 | 343 | 6.84e-104 | 309 |
| Msa1196130 | MtrunA17_Chr4g0041471 | 46.866 | 335 | 171 | 6 | 10 | 341 | 11 | 341 | 7.46e-104 | 309 |
| Msa1196130 | MtrunA17_Chr2g0283901 | 45.245 | 347 | 170 | 9 | 8 | 342 | 18 | 356 | 1.44e-96 | 295 |
| Msa1196130 | MtrunA17_Chr7g0248811 | 40.936 | 342 | 183 | 8 | 5 | 340 | 6 | 334 | 9.58e-91 | 275 |
| Msa1196130 | MtrunA17_Chr7g0248391 | 47.267 | 311 | 145 | 10 | 35 | 341 | 42 | 337 | 2.24e-89 | 272 |
| Msa1196130 | MtrunA17_Chr8g0379151 | 41.398 | 372 | 180 | 13 | 1 | 348 | 22 | 379 | 9.02e-79 | 246 |
| Msa1196130 | MtrunA17_Chr2g0283741 | 39.450 | 327 | 181 | 10 | 25 | 343 | 43 | 360 | 3.54e-75 | 236 |
| Msa1196130 | MtrunA17_Chr0c27g0493921 | 42.671 | 307 | 155 | 9 | 41 | 341 | 57 | 348 | 5.95e-73 | 230 |
| Msa1196130 | MtrunA17_Chr4g0070441 | 43.357 | 286 | 146 | 8 | 41 | 320 | 57 | 332 | 1.02e-69 | 222 |
| Msa1196130 | MtrunA17_Chr2g0283671 | 51.339 | 224 | 104 | 5 | 119 | 341 | 8 | 227 | 1.14e-68 | 215 |
| Msa1196130 | MtrunA17_Chr2g0311471 | 38.122 | 362 | 187 | 14 | 1 | 341 | 1 | 346 | 3.46e-67 | 215 |
| Msa1196130 | MtrunA17_Chr2g0311381 | 39.385 | 358 | 183 | 17 | 6 | 341 | 5 | 350 | 1.38e-65 | 211 |
| Msa1196130 | MtrunA17_Chr1g0155781 | 40.604 | 298 | 151 | 8 | 41 | 321 | 57 | 345 | 3.99e-64 | 207 |
| Msa1196130 | MtrunA17_Chr4g0035551 | 38.701 | 354 | 161 | 13 | 7 | 321 | 5 | 341 | 7.59e-63 | 204 |
| Msa1196130 | MtrunA17_Chr2g0311391 | 37.113 | 388 | 175 | 19 | 6 | 343 | 5 | 373 | 4.35e-60 | 197 |
| Msa1196130 | MtrunA17_Chr1g0199131 | 35.030 | 334 | 183 | 8 | 35 | 349 | 56 | 374 | 2.13e-57 | 191 |
| Msa1196130 | MtrunA17_Chr1g0156161 | 42.291 | 227 | 118 | 7 | 119 | 339 | 42 | 261 | 9.34e-54 | 178 |
| Msa1196130 | MtrunA17_Chr4g0036731 | 31.928 | 332 | 175 | 8 | 8 | 321 | 7 | 305 | 8.76e-47 | 161 |
| Msa1196130 | MtrunA17_Chr4g0036281 | 32.622 | 328 | 173 | 8 | 9 | 321 | 15 | 309 | 2.61e-46 | 160 |
| Msa1196130 | MtrunA17_Chr4g0037291 | 32.641 | 337 | 170 | 10 | 8 | 321 | 48 | 350 | 4.57e-46 | 161 |
| Msa1196130 | MtrunA17_Chr7g0248421 | 52.349 | 149 | 66 | 3 | 149 | 296 | 57 | 201 | 3.75e-44 | 151 |
| Msa1196130 | MtrunA17_Chr2g0283751 | 32.517 | 286 | 161 | 7 | 1 | 262 | 1 | 278 | 3.80e-44 | 154 |
| Msa1196130 | MtrunA17_Chr2g0283661 | 29.885 | 348 | 147 | 14 | 9 | 340 | 4 | 270 | 3.51e-36 | 132 |
| Msa1196130 | MtrunA17_Chr7g0248371 | 47.706 | 109 | 54 | 3 | 243 | 350 | 34 | 140 | 6.18e-31 | 115 |
| Msa1196130 | MtrunA17_Chr1g0156771 | 53.271 | 107 | 45 | 4 | 119 | 221 | 48 | 153 | 1.06e-29 | 112 |
| Msa1196130 | MtrunA17_Chr7g0271041 | 27.848 | 316 | 188 | 13 | 48 | 333 | 25 | 330 | 2.05e-28 | 113 |
| Msa1196130 | MtrunA17_Chr2g0311091 | 35.450 | 189 | 103 | 6 | 1 | 175 | 1 | 184 | 1.32e-27 | 107 |
| Msa1196130 | MtrunA17_Chr7g0271031 | 30.035 | 283 | 165 | 13 | 82 | 340 | 110 | 383 | 3.54e-25 | 105 |
| Msa1196130 | MtrunA17_Chr7g0248661 | 52.632 | 76 | 34 | 2 | 267 | 341 | 2 | 76 | 1.38e-22 | 90.1 |
| Msa1196130 | MtrunA17_Chr8g0379671 | 36.923 | 130 | 71 | 5 | 166 | 293 | 23 | 143 | 1.33e-15 | 73.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1196130 | AT5G43060.1 | 64.789 | 355 | 100 | 6 | 9 | 345 | 10 | 357 | 3.86e-165 | 469 |
| Msa1196130 | AT1G47128.1 | 61.517 | 356 | 111 | 5 | 8 | 345 | 9 | 356 | 2.17e-163 | 465 |
| Msa1196130 | AT4G36880.1 | 63.095 | 336 | 118 | 2 | 17 | 346 | 31 | 366 | 2.37e-159 | 451 |
| Msa1196130 | AT3G19390.1 | 61.318 | 349 | 121 | 6 | 1 | 342 | 5 | 346 | 1.02e-157 | 450 |
| Msa1196130 | AT3G19400.1 | 59.412 | 340 | 127 | 7 | 19 | 353 | 27 | 360 | 1.28e-143 | 411 |
| Msa1196130 | AT4G23520.1 | 54.155 | 349 | 144 | 7 | 9 | 348 | 15 | 356 | 4.60e-135 | 389 |
| Msa1196130 | AT3G48340.1 | 53.529 | 340 | 150 | 4 | 9 | 342 | 7 | 344 | 1.42e-128 | 373 |
| Msa1196130 | AT1G20850.1 | 53.145 | 318 | 145 | 2 | 25 | 342 | 41 | 354 | 5.58e-126 | 366 |
| Msa1196130 | AT4G11310.1 | 49.716 | 352 | 161 | 5 | 3 | 342 | 6 | 353 | 2.25e-121 | 355 |
| Msa1196130 | AT4G11320.2 | 48.108 | 370 | 169 | 5 | 3 | 353 | 6 | 371 | 2.83e-121 | 355 |
| Msa1196130 | AT4G11320.1 | 48.108 | 370 | 169 | 5 | 3 | 353 | 6 | 371 | 2.83e-121 | 355 |
| Msa1196130 | AT4G35350.1 | 49.704 | 338 | 157 | 4 | 13 | 342 | 21 | 353 | 1.08e-120 | 352 |
| Msa1196130 | AT5G50260.1 | 50.289 | 346 | 165 | 5 | 1 | 342 | 1 | 343 | 4.20e-120 | 351 |
| Msa1196130 | AT1G09850.1 | 49.249 | 333 | 162 | 3 | 11 | 342 | 8 | 334 | 5.01e-117 | 346 |
| Msa1196130 | AT1G06260.1 | 50.000 | 344 | 161 | 6 | 2 | 342 | 8 | 343 | 5.09e-116 | 340 |
| Msa1196130 | AT3G48350.1 | 49.280 | 347 | 168 | 6 | 1 | 342 | 1 | 344 | 1.78e-113 | 334 |
| Msa1196130 | AT5G45890.1 | 49.708 | 342 | 160 | 7 | 4 | 341 | 12 | 345 | 4.05e-113 | 333 |
| Msa1196130 | AT3G43960.1 | 50.284 | 352 | 153 | 13 | 15 | 355 | 18 | 358 | 2.16e-106 | 317 |
| Msa1196130 | AT3G19400.2 | 58.397 | 262 | 99 | 6 | 19 | 275 | 27 | 283 | 3.57e-105 | 310 |
| Msa1196130 | AT2G27420.1 | 45.714 | 350 | 178 | 8 | 1 | 341 | 1 | 347 | 2.10e-97 | 293 |
| Msa1196130 | AT2G34080.1 | 42.151 | 344 | 192 | 5 | 1 | 341 | 5 | 344 | 4.11e-94 | 284 |
| Msa1196130 | AT3G49340.1 | 42.733 | 344 | 185 | 7 | 6 | 341 | 1 | 340 | 2.57e-91 | 277 |
| Msa1196130 | AT1G29080.1 | 41.108 | 343 | 193 | 7 | 4 | 341 | 7 | 345 | 5.41e-89 | 271 |
| Msa1196130 | AT4G35350.2 | 47.601 | 271 | 129 | 4 | 13 | 275 | 21 | 286 | 1.39e-87 | 266 |
| Msa1196130 | AT1G29090.1 | 42.980 | 349 | 182 | 9 | 6 | 341 | 10 | 354 | 6.20e-87 | 266 |
| Msa1196130 | AT3G48350.2 | 45.520 | 279 | 146 | 4 | 1 | 275 | 1 | 277 | 4.76e-77 | 239 |
| Msa1196130 | AT5G60360.1 | 43.182 | 308 | 152 | 9 | 41 | 341 | 65 | 356 | 1.01e-74 | 235 |
| Msa1196130 | AT1G29110.1 | 35.777 | 341 | 196 | 6 | 10 | 341 | 7 | 333 | 3.34e-73 | 230 |
| Msa1196130 | AT5G60360.2 | 42.857 | 308 | 152 | 10 | 41 | 341 | 65 | 355 | 3.78e-72 | 228 |
| Msa1196130 | AT5G60360.3 | 43.206 | 287 | 145 | 8 | 41 | 320 | 65 | 340 | 3.14e-70 | 224 |
| Msa1196130 | AT3G45310.1 | 41.883 | 308 | 156 | 9 | 41 | 341 | 65 | 356 | 3.20e-69 | 221 |
| Msa1196130 | AT3G45310.2 | 41.558 | 308 | 156 | 10 | 41 | 341 | 65 | 355 | 1.13e-66 | 214 |
| Msa1196130 | AT4G39090.1 | 38.644 | 295 | 157 | 5 | 41 | 319 | 57 | 343 | 1.38e-62 | 204 |
| Msa1196130 | AT2G21430.1 | 35.922 | 309 | 171 | 6 | 27 | 319 | 43 | 340 | 2.21e-60 | 198 |
| Msa1196130 | AT3G54940.2 | 35.692 | 325 | 179 | 8 | 35 | 338 | 51 | 366 | 3.62e-59 | 195 |
| Msa1196130 | AT4G16190.1 | 35.987 | 314 | 173 | 9 | 28 | 321 | 45 | 350 | 1.12e-55 | 186 |
| Msa1196130 | AT3G54940.3 | 35.622 | 233 | 133 | 4 | 35 | 257 | 51 | 276 | 6.62e-42 | 148 |
| Msa1196130 | AT1G02305.1 | 29.393 | 313 | 180 | 14 | 73 | 354 | 59 | 361 | 1.07e-26 | 109 |
| Msa1196130 | AT4G01610.1 | 27.018 | 285 | 176 | 11 | 72 | 333 | 55 | 330 | 1.14e-22 | 97.8 |
| Msa1196130 | AT4G01610.2 | 26.316 | 285 | 178 | 11 | 72 | 333 | 55 | 330 | 1.29e-20 | 92.0 |
| Msa1196130 | AT1G02300.1 | 30.516 | 213 | 117 | 9 | 144 | 333 | 146 | 350 | 2.73e-16 | 79.7 |
| Msa1196130 | AT2G22160.1 | 30.851 | 94 | 60 | 1 | 51 | 144 | 10 | 98 | 4.77e-11 | 59.7 |
Find 107 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGAATATCGCAACATGTATT+TGG | 0.152793 | 8_1:-44897159 | Msa1196130:CDS |
| ATTGAATTATATATGCTTAT+TGG | 0.155563 | 8_1:-44894801 | Msa1196130:three_prime_UTR |
| CTGAAAATGGTGTTGATTAT+TGG | 0.240301 | 8_1:-44895035 | Msa1196130:CDS |
| GTTGGATATGGTTCTGAAAA+TGG | 0.244091 | 8_1:-44895048 | Msa1196130:CDS |
| ATTAAAATGCTTACCCTTGT+TGG | 0.270555 | 8_1:+44895600 | None:intergenic |
| GGAACTCATGGGGCACAAAC+TGG | 0.305715 | 8_1:-44895005 | Msa1196130:CDS |
| GGTGTGGTTGTTGTTGGATA+TGG | 0.309222 | 8_1:-44895060 | Msa1196130:CDS |
| TTTGAATTCATCGTTGAAAA+TGG | 0.320532 | 8_1:-44895678 | Msa1196130:CDS |
| TTCCTTGATCACTTTGTCAT+TGG | 0.330785 | 8_1:-44897390 | Msa1196130:CDS |
| CATAAGGTGTATAATGGTTT+AGG | 0.340198 | 8_1:-44897299 | Msa1196130:CDS |
| TGTACTTCACAGGAAGTTGC+TGG | 0.341497 | 8_1:-44895839 | Msa1196130:intron |
| TTGCTATTGAGGCCGGTGGC+AGG | 0.347942 | 8_1:-44895304 | Msa1196130:CDS |
| CTAAACCATTATACACCTTA+TGG | 0.348204 | 8_1:+44897300 | None:intergenic |
| ACCATACTTCACTGGGTATG+AGG | 0.376443 | 8_1:+44894906 | None:intergenic |
| AATTCCACACTTTCCTGTAT+TGG | 0.376785 | 8_1:+44894939 | None:intergenic |
| CCGGTGACCGGTGGTGATCT+TGG | 0.378957 | 8_1:+44897100 | None:intergenic |
| AAACACCATAAGGTGTATAA+TGG | 0.383316 | 8_1:-44897305 | Msa1196130:CDS |
| AAAGAAGAGCAAGGATGTTA+TGG | 0.388472 | 8_1:+44897412 | None:intergenic |
| GGTTGCCTGTGCATGTTGAT+TGG | 0.401016 | 8_1:-44897055 | Msa1196130:CDS |
| GCCAAGGTAGTGAGCATTGA+TGG | 0.412005 | 8_1:-44895395 | Msa1196130:CDS |
| GATCATGGTGTGGTTGTTGT+TGG | 0.414909 | 8_1:-44895066 | Msa1196130:CDS |
| GAATATCGCAACATGTATTT+GGG | 0.415509 | 8_1:-44897158 | Msa1196130:CDS |
| ATAAGCATATATAATTCAAT+AGG | 0.419418 | 8_1:+44894804 | None:intergenic |
| GCCTCATACCCAGTGAAGTA+TGG | 0.426327 | 8_1:-44894907 | Msa1196130:CDS |
| CAAAATTACACATACAAAGT+AGG | 0.430615 | 8_1:-44897212 | Msa1196130:CDS |
| TTGATGCCATGGTTGGTGTT+TGG | 0.432551 | 8_1:+44897438 | None:intergenic |
| GAACTCATGGGGCACAAACT+GGG | 0.439893 | 8_1:-44895004 | Msa1196130:CDS |
| CTGCCCTCAAATCCCTTGTA+TGG | 0.445182 | 8_1:+44895630 | None:intergenic |
| CGGTAGATGTGGAACAAACT+TGG | 0.448781 | 8_1:-44895088 | Msa1196130:CDS |
| GTGTTTGGCTACGGAGAGAA+AGG | 0.453638 | 8_1:+44897453 | None:intergenic |
| GCTATAAACAAAATAGTGAC+AGG | 0.472984 | 8_1:-44895789 | Msa1196130:CDS |
| TGCTATTGAGGCCGGTGGCA+GGG | 0.475813 | 8_1:-44895303 | Msa1196130:CDS |
| TTAGGCTTTGATGAACTAGT+TGG | 0.479954 | 8_1:+44897480 | None:intergenic |
| TATCCATACAAGGGATTTGA+GGG | 0.490268 | 8_1:-44895633 | Msa1196130:CDS |
| GGCTTTGCAGCTCTATCAAT+CGG | 0.492907 | 8_1:-44895282 | Msa1196130:intron |
| TTTAACACTTCAGATATTGT+TGG | 0.496462 | 8_1:+44894831 | None:intergenic |
| CCATGGTTGGTGTTTGGCTA+CGG | 0.499965 | 8_1:+44897444 | None:intergenic |
| ATTGGTTGGTGAGGAACTCA+TGG | 0.501730 | 8_1:-44895017 | Msa1196130:CDS |
| GGCACAAACTGGGGTGAAGA+AGG | 0.502960 | 8_1:-44894994 | Msa1196130:CDS |
| ATGGTTGGTAAAACACCATA+AGG | 0.503486 | 8_1:-44897315 | Msa1196130:CDS |
| CAAGTTTGTTCCACATCTAC+CGG | 0.505337 | 8_1:+44895089 | None:intergenic |
| TGCCAATGACAAAGTGATCA+AGG | 0.505373 | 8_1:+44897388 | None:intergenic |
| GCTGGTACAAATTGATATTG+AGG | 0.511728 | 8_1:+44894730 | None:intergenic |
| CTATCCATACAAGGGATTTG+AGG | 0.526290 | 8_1:-44895634 | Msa1196130:CDS |
| TCCATCAATGCTCACTACCT+TGG | 0.527147 | 8_1:+44895394 | None:intergenic |
| ATTAAAAGCATACCGGTGAC+CGG | 0.528807 | 8_1:+44897088 | None:intergenic |
| GATCACTTTGTCATTGGCAA+TGG | 0.530628 | 8_1:-44897384 | Msa1196130:CDS |
| AACACTTCAGATATTGTTGG+TGG | 0.530989 | 8_1:+44894834 | None:intergenic |
| ACCTGTGAGTGTTGCTATTG+AGG | 0.533824 | 8_1:-44895315 | Msa1196130:CDS |
| AACCTCCTCGTTACTACGCA+TGG | 0.534905 | 8_1:+44897355 | None:intergenic |
| AAAATTACACATACAAAGTA+GGG | 0.535927 | 8_1:-44897211 | Msa1196130:CDS |
| TGTGATAGAGCTTTCAATGA+AGG | 0.543376 | 8_1:-44895729 | Msa1196130:CDS |
| GTGATAGAGCTTTCAATGAA+GGG | 0.544650 | 8_1:-44895728 | Msa1196130:CDS |
| TTCAATGAAGGGTGCAATGG+TGG | 0.551502 | 8_1:-44895717 | Msa1196130:CDS |
| CAAATAACAGTAGTGAAAGC+TGG | 0.551939 | 8_1:+44894712 | None:intergenic |
| GCCTCAATAGCAACACTCAC+AGG | 0.554592 | 8_1:+44895314 | None:intergenic |
| TACGGAGAGAAAGGGTGGTT+AGG | 0.557405 | 8_1:+44897462 | None:intergenic |
| GTACTTCACAGGAAGTTGCT+GGG | 0.560605 | 8_1:-44895838 | Msa1196130:intron |
| TGAACAAGACTATCCATACA+AGG | 0.565666 | 8_1:-44895643 | Msa1196130:CDS |
| GACCTCCAATCAACATGCAC+AGG | 0.565711 | 8_1:+44897050 | None:intergenic |
| GAATTCATCGTTGAAAATGG+TGG | 0.566710 | 8_1:-44895675 | Msa1196130:CDS |
| AGGGTGCAATGGTGGTCTCA+TGG | 0.567177 | 8_1:-44895709 | Msa1196130:CDS |
| ATCAAAGATCAAGGAAGTTG+TGG | 0.567766 | 8_1:-44897008 | Msa1196130:intron |
| CCAAGATCACCACCGGTCAC+CGG | 0.568353 | 8_1:-44897100 | Msa1196130:CDS |
| ATGGTGATTGATGCCATGGT+TGG | 0.571355 | 8_1:+44897431 | None:intergenic |
| GTTGCTCGTATCAAAGATCA+AGG | 0.571746 | 8_1:-44897017 | Msa1196130:CDS |
| GAGCTGCAAAGCCCTGCCAC+CGG | 0.577972 | 8_1:+44895292 | None:intergenic |
| AACTCATGGGGCACAAACTG+GGG | 0.578307 | 8_1:-44895003 | Msa1196130:CDS |
| TTGGTTGGTGAGGAACTCAT+GGG | 0.579060 | 8_1:-44895016 | Msa1196130:CDS |
| TTATGAACATGTACGAGGAA+TGG | 0.579501 | 8_1:-44897334 | Msa1196130:CDS |
| TGCCTGTGCATGTTGATTGG+AGG | 0.581463 | 8_1:-44897052 | Msa1196130:CDS |
| ACTTCAGATATTGTTGGTGG+TGG | 0.582028 | 8_1:+44894837 | None:intergenic |
| GTGAGTGTTGCTATTGAGGC+CGG | 0.589717 | 8_1:-44895311 | Msa1196130:CDS |
| AAGACCAATACAGGAAAGTG+TGG | 0.590273 | 8_1:-44894943 | Msa1196130:CDS |
| GGTGTATTTACCGGTAGATG+TGG | 0.590389 | 8_1:-44895099 | Msa1196130:CDS |
| TGTTATGGTGATTGATGCCA+TGG | 0.590826 | 8_1:+44897427 | None:intergenic |
| GAACATGTACGAGGAATGGT+TGG | 0.591249 | 8_1:-44897330 | Msa1196130:CDS |
| AGGGCAGATGTGATCCAACA+AGG | 0.596696 | 8_1:-44895614 | Msa1196130:CDS |
| CACCGGAATTAAAAGCATAC+CGG | 0.600520 | 8_1:+44897081 | None:intergenic |
| GCTTTCAATGAAGGGTGCAA+TGG | 0.603342 | 8_1:-44895720 | Msa1196130:CDS |
| ATGCACAGGCAACCGATCAC+CGG | 0.604071 | 8_1:+44897064 | None:intergenic |
| AAATGGTGTTGATTATTGGT+TGG | 0.606212 | 8_1:-44895031 | Msa1196130:CDS |
| GTTTAGGAGAGAAAGATCGA+AGG | 0.607500 | 8_1:-44897283 | Msa1196130:CDS |
| GTGTTGATTATTGGTTGGTG+AGG | 0.611108 | 8_1:-44895026 | Msa1196130:CDS |
| TGTGGAACAAACTTGGATCA+TGG | 0.612535 | 8_1:-44895081 | Msa1196130:CDS |
| GATCAAGGAAAAGAAGAGCA+AGG | 0.613129 | 8_1:+44897403 | None:intergenic |
| CATGTTGATTGGAGGTCGAA+AGG | 0.619027 | 8_1:-44897044 | Msa1196130:CDS |
| GAGGAGTGATGCCAAACGTA+GGG | 0.622581 | 8_1:-44897132 | Msa1196130:CDS |
| TGTTTGGCTACGGAGAGAAA+GGG | 0.628243 | 8_1:+44897454 | None:intergenic |
| CACGTCCATGCGTAGTAACG+AGG | 0.636349 | 8_1:-44897360 | Msa1196130:CDS |
| ATGAAAACCAAGATCACCAC+CGG | 0.640415 | 8_1:-44897107 | Msa1196130:CDS |
| CTATAAACAAAATAGTGACA+GGG | 0.655594 | 8_1:-44895788 | Msa1196130:CDS |
| CGAGGAGTGATGCCAAACGT+AGG | 0.659483 | 8_1:-44897133 | Msa1196130:CDS |
| CCGTAGCCAAACACCAACCA+TGG | 0.667989 | 8_1:-44897444 | Msa1196130:exon |
| TTGGCTACGGAGAGAAAGGG+TGG | 0.676716 | 8_1:+44897457 | None:intergenic |
| AGTGTTGCTATTGAGGCCGG+TGG | 0.679573 | 8_1:-44895308 | Msa1196130:CDS |
| AAAAGCATACCGGTGACCGG+TGG | 0.684937 | 8_1:+44897091 | None:intergenic |
| AACAAACTTGGATCATGGTG+TGG | 0.692394 | 8_1:-44895076 | Msa1196130:CDS |
| GAACAAGACTATCCATACAA+GGG | 0.692415 | 8_1:-44895642 | Msa1196130:CDS |
| GGGCAGATGTGATCCAACAA+GGG | 0.694740 | 8_1:-44895613 | Msa1196130:intron |
| GCAACATGTATTTGGGCACG+AGG | 0.696732 | 8_1:-44897151 | Msa1196130:CDS |
| TTTGTTTATAGCTTCCACTG+TGG | 0.711165 | 8_1:+44895800 | None:intergenic |
| TGGTTGGTGAGGAACTCATG+GGG | 0.718625 | 8_1:-44895015 | Msa1196130:CDS |
| GTCCATGCGTAGTAACGAGG+AGG | 0.719075 | 8_1:-44897357 | Msa1196130:CDS |
| GTTTGCTGATATGACTAACG+AGG | 0.737032 | 8_1:-44897180 | Msa1196130:CDS |
| GGAGGTTATGAACATGTACG+AGG | 0.768455 | 8_1:-44897339 | Msa1196130:CDS |
| GTTCTCAACAATAGCCACAG+TGG | 0.769143 | 8_1:-44895814 | Msa1196130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATAAATTGCAAAATTAT+AGG | + | chr8_1:44895182-44895201 | None:intergenic | 10.0% |
| !!! | ATATTCTTAATAAACTATTT+TGG | + | chr8_1:44895517-44895536 | None:intergenic | 10.0% |
| !! | AGTTTATTAAGAATATAAAT+AGG | - | chr8_1:44895551-44895570 | Msa1196130:intron | 10.0% |
| !!! | TGATCATTAATTTTATTTTT+AGG | - | chr8_1:44896083-44896102 | Msa1196130:intron | 10.0% |
| !!! | TAGTATTTTTTATTAGTATA+AGG | + | chr8_1:44896586-44896605 | None:intergenic | 10.0% |
| !! | GATAATATTAAAAATAACTA+TGG | - | chr8_1:44896609-44896628 | Msa1196130:intron | 10.0% |
| !!! | ATTGTTTTTCTAATAATATA+TGG | - | chr8_1:44896702-44896721 | Msa1196130:intron | 10.0% |
| !!! | TTGTTTTTCTAATAATATAT+GGG | - | chr8_1:44896703-44896722 | Msa1196130:intron | 10.0% |
| !!! | GAAATTTTTAAGGATAATTT+AGG | - | chr8_1:44894888-44894907 | Msa1196130:CDS | 15.0% |
| !! | AATTTAAATAAAGTCCTTAA+GGG | + | chr8_1:44895256-44895275 | None:intergenic | 15.0% |
| !! | AAATTTAAATAAAGTCCTTA+AGG | + | chr8_1:44895257-44895276 | None:intergenic | 15.0% |
| !! | AAAAGGATTTAAACATATAT+CGG | + | chr8_1:44895301-44895320 | None:intergenic | 15.0% |
| !! | CAAAAAGAACTATATAAAAA+AGG | + | chr8_1:44895318-44895337 | None:intergenic | 15.0% |
| !! | AAGAACTATATAAAAGATAA+AGG | + | chr8_1:44895363-44895382 | None:intergenic | 15.0% |
| !!! | TTTTTTTTAAATACTTTGAG+AGG | - | chr8_1:44895476-44895495 | Msa1196130:intron | 15.0% |
| !!! | TTAAGCTAATAAATTTTCAT+CGG | - | chr8_1:44895721-44895740 | Msa1196130:CDS | 15.0% |
| !!! | AATATTTTTACTCAATTACA+TGG | - | chr8_1:44895880-44895899 | Msa1196130:intron | 15.0% |
| !! | TTTAGCACAAATAAATTAAA+GGG | + | chr8_1:44896148-44896167 | None:intergenic | 15.0% |
| !! | AACAAACTTTGATTAAAAAT+TGG | - | chr8_1:44896166-44896185 | Msa1196130:intron | 15.0% |
| !! | GAAACTAATGAATTATTATA+TGG | - | chr8_1:44896968-44896987 | Msa1196130:intron | 15.0% |
| !!! | TGACTATATAATTTTTTTCA+GGG | - | chr8_1:44897025-44897044 | Msa1196130:CDS | 15.0% |
| !! | ATAAGCATATATAATTCAAT+AGG | + | chr8_1:44897344-44897363 | None:intergenic | 15.0% |
| !! | ATTGAATTATATATGCTTAT+TGG | - | chr8_1:44897344-44897363 | Msa1196130:CDS | 15.0% |
| !! | AAAATTACACATACAAAGTA+GGG | - | chr8_1:44894934-44894953 | Msa1196130:CDS | 20.0% |
| !!! | GCAATTTATTTTGTTTGTTA+AGG | - | chr8_1:44895190-44895209 | Msa1196130:intron | 20.0% |
| !!! | TTATTTTGTTTGTTAAGGTT+TGG | - | chr8_1:44895195-44895214 | Msa1196130:intron | 20.0% |
| !! | TATATAATAATAGATGCAAG+TGG | + | chr8_1:44895421-44895440 | None:intergenic | 20.0% |
| !!! | GGAATTTATGTATATACTTT+TGG | + | chr8_1:44895602-44895621 | None:intergenic | 20.0% |
| !!! | GTAGTTTTTTTTTTTCTATC+TGG | - | chr8_1:44895816-44895835 | Msa1196130:CDS | 20.0% |
| !! | GTTTAGCACAAATAAATTAA+AGG | + | chr8_1:44896149-44896168 | None:intergenic | 20.0% |
| !! | GATTAAAAATTGGTAAGTAA+TGG | - | chr8_1:44896176-44896195 | Msa1196130:intron | 20.0% |
| !!! | CTGACTATATAATTTTTTTC+AGG | - | chr8_1:44897024-44897043 | Msa1196130:CDS | 20.0% |
| !!! | TCGAAGGTTTGAAATTTTTA+AGG | - | chr8_1:44894878-44894897 | Msa1196130:CDS | 25.0% |
| ! | CAAAATTACACATACAAAGT+AGG | - | chr8_1:44894933-44894952 | Msa1196130:CDS | 25.0% |
| !!! | GGATAAGTAACCTTTTTTTT+AGG | + | chr8_1:44895235-44895254 | None:intergenic | 25.0% |
| !!! | ACTTTTGGTAATTGTACTTT+TGG | + | chr8_1:44895587-44895606 | None:intergenic | 25.0% |
| ! | CACTCATATTCTAAATAGAT+TGG | + | chr8_1:44895623-44895642 | None:intergenic | 25.0% |
| !!! | AAGCTTTAGATAAGACTTTT+TGG | - | chr8_1:44896043-44896062 | Msa1196130:intron | 25.0% |
| ! | AAAAATTGGTAAGTAATGGT+AGG | - | chr8_1:44896180-44896199 | Msa1196130:intron | 25.0% |
| ! | AATAGTCCAATATTTAACTG+AGG | + | chr8_1:44896240-44896259 | None:intergenic | 25.0% |
| ! | TCAGTTAAATATTGGACTAT+TGG | - | chr8_1:44896239-44896258 | Msa1196130:intron | 25.0% |
| ! | CTATAAACAAAATAGTGACA+GGG | - | chr8_1:44896357-44896376 | Msa1196130:intron | 25.0% |
| !! | ATTTTCAACGATGAATTCAA+AGG | + | chr8_1:44896468-44896487 | None:intergenic | 25.0% |
| ! | TTTGAATTCATCGTTGAAAA+TGG | - | chr8_1:44896467-44896486 | Msa1196130:intron | 25.0% |
| !! | AATGCATTTTCATTATAAGC+TGG | + | chr8_1:44896789-44896808 | None:intergenic | 25.0% |
| ! | TTTAACACTTCAGATATTGT+TGG | + | chr8_1:44897317-44897336 | None:intergenic | 25.0% |
| AAACACCATAAGGTGTATAA+TGG | - | chr8_1:44894840-44894859 | Msa1196130:three_prime_UTR | 30.0% | |
| CTAAACCATTATACACCTTA+TGG | + | chr8_1:44894848-44894867 | None:intergenic | 30.0% | |
| CATAAGGTGTATAATGGTTT+AGG | - | chr8_1:44894846-44894865 | Msa1196130:three_prime_UTR | 30.0% | |
| GAATATCGCAACATGTATTT+GGG | - | chr8_1:44894987-44895006 | Msa1196130:CDS | 30.0% | |
| !! | AGTTGTGGTAAGTTTGTTTT+AGG | - | chr8_1:44895152-44895171 | Msa1196130:intron | 30.0% |
| !!! | GTTGTGGTAAGTTTGTTTTA+GGG | - | chr8_1:44895153-44895172 | Msa1196130:intron | 30.0% |
| AAAAGGTTACTTATCCCTTA+AGG | - | chr8_1:44895239-44895258 | Msa1196130:intron | 30.0% | |
| !! | TTGGTAATTGTACTTTTGGA+CGG | + | chr8_1:44895583-44895602 | None:intergenic | 30.0% |
| AAATTAAGATCACGTGTTCA+TGG | + | chr8_1:44895966-44895985 | None:intergenic | 30.0% | |
| GTTTGACCTCAGTTAAATAT+TGG | - | chr8_1:44896231-44896250 | Msa1196130:intron | 30.0% | |
| ! | TACATTTTCTTGTACTTCAC+AGG | - | chr8_1:44896296-44896315 | Msa1196130:intron | 30.0% |
| GCTATAAACAAAATAGTGAC+AGG | - | chr8_1:44896356-44896375 | Msa1196130:intron | 30.0% | |
| ATTAAAATGCTTACCCTTGT+TGG | + | chr8_1:44896548-44896567 | None:intergenic | 30.0% | |
| GTTGTTCGATCAAAATTAGA+CGG | - | chr8_1:44896923-44896942 | Msa1196130:intron | 30.0% | |
| !!! | TTTTTTCAGGGTGTATTTAC+CGG | - | chr8_1:44897037-44897056 | Msa1196130:CDS | 30.0% |
| !! | CTGAAAATGGTGTTGATTAT+TGG | - | chr8_1:44897110-44897129 | Msa1196130:CDS | 30.0% |
| !! | AAATGGTGTTGATTATTGGT+TGG | - | chr8_1:44897114-44897133 | Msa1196130:CDS | 30.0% |
| AATGTGAAAAAGACCAATAC+AGG | - | chr8_1:44897193-44897212 | Msa1196130:CDS | 30.0% | |
| AAAGAAGAGCAAGGATGTTA+TGG | + | chr8_1:44894736-44894755 | None:intergenic | 35.0% | |
| TTCCTTGATCACTTTGTCAT+TGG | - | chr8_1:44894755-44894774 | Msa1196130:three_prime_UTR | 35.0% | |
| TTATGAACATGTACGAGGAA+TGG | - | chr8_1:44894811-44894830 | Msa1196130:three_prime_UTR | 35.0% | |
| !! | ATGGTTGGTAAAACACCATA+AGG | - | chr8_1:44894830-44894849 | Msa1196130:three_prime_UTR | 35.0% |
| GGAATATCGCAACATGTATT+TGG | - | chr8_1:44894986-44895005 | Msa1196130:CDS | 35.0% | |
| !! | ATGCTTTTAATTCCGGTGAT+CGG | - | chr8_1:44895069-44895088 | Msa1196130:CDS | 35.0% |
| ATCAAAGATCAAGGAAGTTG+TGG | - | chr8_1:44895137-44895156 | Msa1196130:intron | 35.0% | |
| ! | GTTAAGGTTTGGTTACGTAT+CGG | - | chr8_1:44895206-44895225 | Msa1196130:intron | 35.0% |
| GTATCGGATGCCTAAAAAAA+AGG | - | chr8_1:44895222-44895241 | Msa1196130:intron | 35.0% | |
| ! | ACTTTCTCTTTTCCCAACAA+AGG | - | chr8_1:44895395-44895414 | Msa1196130:CDS | 35.0% |
| ATTGGTAAGTAATGGTAGGT+TGG | - | chr8_1:44896184-44896203 | Msa1196130:intron | 35.0% | |
| TTTGTTTATAGCTTCCACTG+TGG | + | chr8_1:44896348-44896367 | None:intergenic | 35.0% | |
| TGTGATAGAGCTTTCAATGA+AGG | - | chr8_1:44896416-44896435 | Msa1196130:intron | 35.0% | |
| GTGATAGAGCTTTCAATGAA+GGG | - | chr8_1:44896417-44896436 | Msa1196130:intron | 35.0% | |
| GAATTCATCGTTGAAAATGG+TGG | - | chr8_1:44896470-44896489 | Msa1196130:intron | 35.0% | |
| TGAACAAGACTATCCATACA+AGG | - | chr8_1:44896502-44896521 | Msa1196130:intron | 35.0% | |
| GAACAAGACTATCCATACAA+GGG | - | chr8_1:44896503-44896522 | Msa1196130:intron | 35.0% | |
| TATCCATACAAGGGATTTGA+GGG | - | chr8_1:44896512-44896531 | Msa1196130:intron | 35.0% | |
| TCTTGCTTCGAGCTTAAATA+TGG | + | chr8_1:44896950-44896969 | None:intergenic | 35.0% | |
| !! | GTTGGATATGGTTCTGAAAA+TGG | - | chr8_1:44897097-44897116 | Msa1196130:CDS | 35.0% |
| AATTCCACACTTTCCTGTAT+TGG | + | chr8_1:44897209-44897228 | None:intergenic | 35.0% | |
| !! | AGTTTTGACCATACTTCACT+GGG | + | chr8_1:44897249-44897268 | None:intergenic | 35.0% |
| AACACTTCAGATATTGTTGG+TGG | + | chr8_1:44897314-44897333 | None:intergenic | 35.0% | |
| GCTGGTACAAATTGATATTG+AGG | + | chr8_1:44897418-44897437 | None:intergenic | 35.0% | |
| CAAATAACAGTAGTGAAAGC+TGG | + | chr8_1:44897436-44897455 | None:intergenic | 35.0% | |
| TGTTATGGTGATTGATGCCA+TGG | + | chr8_1:44894721-44894740 | None:intergenic | 40.0% | |
| GATCAAGGAAAAGAAGAGCA+AGG | + | chr8_1:44894745-44894764 | None:intergenic | 40.0% | |
| TGCCAATGACAAAGTGATCA+AGG | + | chr8_1:44894760-44894779 | None:intergenic | 40.0% | |
| GATCACTTTGTCATTGGCAA+TGG | - | chr8_1:44894761-44894780 | Msa1196130:three_prime_UTR | 40.0% | |
| GTTTAGGAGAGAAAGATCGA+AGG | - | chr8_1:44894862-44894881 | Msa1196130:exon | 40.0% | |
| ! | GTTTGCTGATATGACTAACG+AGG | - | chr8_1:44894965-44894984 | Msa1196130:CDS | 40.0% |
| ! | GGTTTTCATAACCCTACGTT+TGG | + | chr8_1:44895027-44895046 | None:intergenic | 40.0% |
| ATGAAAACCAAGATCACCAC+CGG | - | chr8_1:44895038-44895057 | Msa1196130:CDS | 40.0% | |
| ! | ATTAAAAGCATACCGGTGAC+CGG | + | chr8_1:44895060-44895079 | None:intergenic | 40.0% |
| !! | CACCGGTATGCTTTTAATTC+CGG | - | chr8_1:44895062-44895081 | Msa1196130:CDS | 40.0% |
| ! | CACCGGAATTAAAAGCATAC+CGG | + | chr8_1:44895067-44895086 | None:intergenic | 40.0% |
| GTTGCTCGTATCAAAGATCA+AGG | - | chr8_1:44895128-44895147 | Msa1196130:intron | 40.0% | |
| CTATCCATACAAGGGATTTG+AGG | - | chr8_1:44896511-44896530 | Msa1196130:intron | 40.0% | |
| AATGCTGCAGAAAAATGCCA+AGG | - | chr8_1:44896734-44896753 | Msa1196130:intron | 40.0% | |
| ! | CAAGTTTGTTCCACATCTAC+CGG | + | chr8_1:44897059-44897078 | None:intergenic | 40.0% |
| TGTGGAACAAACTTGGATCA+TGG | - | chr8_1:44897064-44897083 | Msa1196130:CDS | 40.0% | |
| AACAAACTTGGATCATGGTG+TGG | - | chr8_1:44897069-44897088 | Msa1196130:CDS | 40.0% | |
| !! | GTGTTGATTATTGGTTGGTG+AGG | - | chr8_1:44897119-44897138 | Msa1196130:CDS | 40.0% |
| AAGACCAATACAGGAAAGTG+TGG | - | chr8_1:44897202-44897221 | Msa1196130:CDS | 40.0% | |
| !! | GAGTTTTGACCATACTTCAC+TGG | + | chr8_1:44897250-44897269 | None:intergenic | 40.0% |
| ! | ACTTCAGATATTGTTGGTGG+TGG | + | chr8_1:44897311-44897330 | None:intergenic | 40.0% |
| TGTTTGGCTACGGAGAGAAA+GGG | + | chr8_1:44894694-44894713 | None:intergenic | 45.0% | |
| ! | TTGATGCCATGGTTGGTGTT+TGG | + | chr8_1:44894710-44894729 | None:intergenic | 45.0% |
| ATGGTGATTGATGCCATGGT+TGG | + | chr8_1:44894717-44894736 | None:intergenic | 45.0% | |
| GGAGGTTATGAACATGTACG+AGG | - | chr8_1:44894806-44894825 | Msa1196130:three_prime_UTR | 45.0% | |
| GAACATGTACGAGGAATGGT+TGG | - | chr8_1:44894815-44894834 | Msa1196130:three_prime_UTR | 45.0% | |
| ! | CATGTTGATTGGAGGTCGAA+AGG | - | chr8_1:44895101-44895120 | Msa1196130:CDS | 45.0% |
| AGATGCAAGTGGCCTTTGTT+GGG | + | chr8_1:44895410-44895429 | None:intergenic | 45.0% | |
| TAGATGCAAGTGGCCTTTGT+TGG | + | chr8_1:44895411-44895430 | None:intergenic | 45.0% | |
| TGTACTTCACAGGAAGTTGC+TGG | - | chr8_1:44896306-44896325 | Msa1196130:intron | 45.0% | |
| GTACTTCACAGGAAGTTGCT+GGG | - | chr8_1:44896307-44896326 | Msa1196130:intron | 45.0% | |
| GTTCTCAACAATAGCCACAG+TGG | - | chr8_1:44896331-44896350 | Msa1196130:intron | 45.0% | |
| ! | GCTTTCAATGAAGGGTGCAA+TGG | - | chr8_1:44896425-44896444 | Msa1196130:intron | 45.0% |
| ! | TTCAATGAAGGGTGCAATGG+TGG | - | chr8_1:44896428-44896447 | Msa1196130:intron | 45.0% |
| TCCATCAATGCTCACTACCT+TGG | + | chr8_1:44896754-44896773 | None:intergenic | 45.0% | |
| ! | ACCTGTGAGTGTTGCTATTG+AGG | - | chr8_1:44896830-44896849 | Msa1196130:intron | 45.0% |
| GGCTTTGCAGCTCTATCAAT+CGG | - | chr8_1:44896863-44896882 | Msa1196130:intron | 45.0% | |
| GGTGTATTTACCGGTAGATG+TGG | - | chr8_1:44897046-44897065 | Msa1196130:CDS | 45.0% | |
| CGGTAGATGTGGAACAAACT+TGG | - | chr8_1:44897057-44897076 | Msa1196130:CDS | 45.0% | |
| GATCATGGTGTGGTTGTTGT+TGG | - | chr8_1:44897079-44897098 | Msa1196130:CDS | 45.0% | |
| ! | GGTGTGGTTGTTGTTGGATA+TGG | - | chr8_1:44897085-44897104 | Msa1196130:CDS | 45.0% |
| !! | ATTGGTTGGTGAGGAACTCA+TGG | - | chr8_1:44897128-44897147 | Msa1196130:CDS | 45.0% |
| !! | TTGGTTGGTGAGGAACTCAT+GGG | - | chr8_1:44897129-44897148 | Msa1196130:CDS | 45.0% |
| ACCATACTTCACTGGGTATG+AGG | + | chr8_1:44897242-44897261 | None:intergenic | 45.0% | |
| TACGGAGAGAAAGGGTGGTT+AGG | + | chr8_1:44894686-44894705 | None:intergenic | 50.0% | |
| GTGTTTGGCTACGGAGAGAA+AGG | + | chr8_1:44894695-44894714 | None:intergenic | 50.0% | |
| ! | CCATGGTTGGTGTTTGGCTA+CGG | + | chr8_1:44894704-44894723 | None:intergenic | 50.0% |
| AACCTCCTCGTTACTACGCA+TGG | + | chr8_1:44894793-44894812 | None:intergenic | 50.0% | |
| GCAACATGTATTTGGGCACG+AGG | - | chr8_1:44894994-44895013 | Msa1196130:CDS | 50.0% | |
| GAGGAGTGATGCCAAACGTA+GGG | - | chr8_1:44895013-44895032 | Msa1196130:CDS | 50.0% | |
| GGTTGCCTGTGCATGTTGAT+TGG | - | chr8_1:44895090-44895109 | Msa1196130:CDS | 50.0% | |
| ! | TGCCTGTGCATGTTGATTGG+AGG | - | chr8_1:44895093-44895112 | Msa1196130:CDS | 50.0% |
| GACCTCCAATCAACATGCAC+AGG | + | chr8_1:44895098-44895117 | None:intergenic | 50.0% | |
| CTGCCCTCAAATCCCTTGTA+TGG | + | chr8_1:44896518-44896537 | None:intergenic | 50.0% | |
| AGGGCAGATGTGATCCAACA+AGG | - | chr8_1:44896531-44896550 | Msa1196130:intron | 50.0% | |
| GGGCAGATGTGATCCAACAA+GGG | - | chr8_1:44896532-44896551 | Msa1196130:intron | 50.0% | |
| !! | GCCAAGGTAGTGAGCATTGA+TGG | - | chr8_1:44896750-44896769 | Msa1196130:intron | 50.0% |
| GCCTCAATAGCAACACTCAC+AGG | + | chr8_1:44896834-44896853 | None:intergenic | 50.0% | |
| ! | GTGAGTGTTGCTATTGAGGC+CGG | - | chr8_1:44896834-44896853 | Msa1196130:intron | 50.0% |
| !! | TGGTTGGTGAGGAACTCATG+GGG | - | chr8_1:44897130-44897149 | Msa1196130:CDS | 50.0% |
| GAACTCATGGGGCACAAACT+GGG | - | chr8_1:44897141-44897160 | Msa1196130:CDS | 50.0% | |
| AACTCATGGGGCACAAACTG+GGG | - | chr8_1:44897142-44897161 | Msa1196130:CDS | 50.0% | |
| GCCTCATACCCAGTGAAGTA+TGG | - | chr8_1:44897238-44897257 | Msa1196130:CDS | 50.0% | |
| TTGGCTACGGAGAGAAAGGG+TGG | + | chr8_1:44894691-44894710 | None:intergenic | 55.0% | |
| CCGTAGCCAAACACCAACCA+TGG | - | chr8_1:44894701-44894720 | Msa1196130:three_prime_UTR | 55.0% | |
| CACGTCCATGCGTAGTAACG+AGG | - | chr8_1:44894785-44894804 | Msa1196130:three_prime_UTR | 55.0% | |
| GTCCATGCGTAGTAACGAGG+AGG | - | chr8_1:44894788-44894807 | Msa1196130:three_prime_UTR | 55.0% | |
| CGAGGAGTGATGCCAAACGT+AGG | - | chr8_1:44895012-44895031 | Msa1196130:CDS | 55.0% | |
| ! | AAAAGCATACCGGTGACCGG+TGG | + | chr8_1:44895057-44895076 | None:intergenic | 55.0% |
| ATGCACAGGCAACCGATCAC+CGG | + | chr8_1:44895084-44895103 | None:intergenic | 55.0% | |
| AGGGTGCAATGGTGGTCTCA+TGG | - | chr8_1:44896436-44896455 | Msa1196130:intron | 55.0% | |
| ! | AGTGTTGCTATTGAGGCCGG+TGG | - | chr8_1:44896837-44896856 | Msa1196130:intron | 55.0% |
| GGAACTCATGGGGCACAAAC+TGG | - | chr8_1:44897140-44897159 | Msa1196130:CDS | 55.0% | |
| GGCACAAACTGGGGTGAAGA+AGG | - | chr8_1:44897151-44897170 | Msa1196130:CDS | 55.0% | |
| CCAAGATCACCACCGGTCAC+CGG | - | chr8_1:44895045-44895064 | Msa1196130:CDS | 60.0% | |
| ! | TTGCTATTGAGGCCGGTGGC+AGG | - | chr8_1:44896841-44896860 | Msa1196130:intron | 60.0% |
| TGCTATTGAGGCCGGTGGCA+GGG | - | chr8_1:44896842-44896861 | Msa1196130:intron | 60.0% | |
| CCGGTGACCGGTGGTGATCT+TGG | + | chr8_1:44895048-44895067 | None:intergenic | 65.0% | |
| GAGCTGCAAAGCCCTGCCAC+CGG | + | chr8_1:44896856-44896875 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 44894667 | 44897500 | 44894667 | ID=Msa1196130;Name=Msa1196130 |
| chr8_1 | mRNA | 44894667 | 44897500 | 44894667 | ID=Msa1196130-mRNA-1;Parent=Msa1196130;Name=Msa1196130-mRNA-1;_AED=0.08;_eAED=0.08;_QI=53|1|1|1|1|1|4|203|355 |
| chr8_1 | exon | 44894667 | 44895121 | 44894667 | ID=Msa1196130-mRNA-1:exon:14447;Parent=Msa1196130-mRNA-1 |
| chr8_1 | exon | 44895283 | 44895423 | 44895283 | ID=Msa1196130-mRNA-1:exon:14446;Parent=Msa1196130-mRNA-1 |
| chr8_1 | exon | 44895614 | 44895849 | 44895614 | ID=Msa1196130-mRNA-1:exon:14445;Parent=Msa1196130-mRNA-1 |
| chr8_1 | exon | 44897009 | 44897500 | 44897009 | ID=Msa1196130-mRNA-1:exon:14444;Parent=Msa1196130-mRNA-1 |
| chr8_1 | five_prime_UTR | 44897448 | 44897500 | 44897448 | ID=Msa1196130-mRNA-1:five_prime_utr;Parent=Msa1196130-mRNA-1 |
| chr8_1 | CDS | 44897009 | 44897447 | 44897009 | ID=Msa1196130-mRNA-1:cds;Parent=Msa1196130-mRNA-1 |
| chr8_1 | CDS | 44895614 | 44895849 | 44895614 | ID=Msa1196130-mRNA-1:cds;Parent=Msa1196130-mRNA-1 |
| chr8_1 | CDS | 44895283 | 44895423 | 44895283 | ID=Msa1196130-mRNA-1:cds;Parent=Msa1196130-mRNA-1 |
| chr8_1 | CDS | 44894870 | 44895121 | 44894870 | ID=Msa1196130-mRNA-1:cds;Parent=Msa1196130-mRNA-1 |
| chr8_1 | three_prime_UTR | 44894667 | 44894869 | 44894667 | ID=Msa1196130-mRNA-1:three_prime_utr;Parent=Msa1196130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
