AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1196130


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1196130 MtrunA17_Chr4g0053311 96.100 359 10 1 1 355 1 359 0.0 716
Msa1196130 MtrunA17_Chr3g0134231 64.246 358 113 2 3 345 8 365 3.38e-172 487
Msa1196130 MtrunA17_Chr1g0208261 66.964 336 107 3 12 346 68 400 4.13e-168 478
Msa1196130 MtrunA17_Chr1g0153011 61.560 359 105 2 2 346 8 347 9.63e-163 462
Msa1196130 MtrunA17_Chr3g0116551 50.275 364 162 7 4 354 1 358 2.10e-124 362
Msa1196130 MtrunA17_Chr3g0144281 49.128 344 164 4 4 342 11 348 2.07e-122 356
Msa1196130 MtrunA17_Chr4g0041061 50.000 342 159 8 5 341 10 344 8.54e-119 347
Msa1196130 MtrunA17_Chr4g0058081 49.284 349 162 7 4 342 1 344 2.12e-117 344
Msa1196130 MtrunA17_Chr4g0040881 51.515 330 146 8 19 341 22 344 3.75e-117 343
Msa1196130 MtrunA17_Chr5g0405751 48.824 340 164 6 6 341 10 343 6.80e-116 340
Msa1196130 MtrunA17_Chr4g0041081 50.932 322 147 7 24 341 30 344 1.04e-115 339
Msa1196130 MtrunA17_Chr2g0325121 47.813 343 167 5 3 343 6 338 6.82e-115 337
Msa1196130 MtrunA17_Chr4g0024411 49.693 326 148 6 23 341 26 342 2.17e-114 336
Msa1196130 MtrunA17_Chr4g0060251 49.422 346 157 9 3 341 10 344 7.04e-114 334
Msa1196130 MtrunA17_Chr3g0142071 50.637 314 152 3 30 342 45 356 1.31e-112 335
Msa1196130 MtrunA17_Chr2g0315491 49.263 339 161 6 6 341 10 340 6.67e-112 329
Msa1196130 MtrunA17_Chr4g0041481 51.133 309 140 6 35 341 40 339 2.69e-111 328
Msa1196130 MtrunA17_Chr4g0040851 47.025 353 166 7 1 341 16 359 5.72e-111 328
Msa1196130 MtrunA17_Chr4g0041521 48.607 323 155 6 21 341 26 339 8.66e-110 324
Msa1196130 MtrunA17_Chr2g0319991 45.536 336 175 5 9 341 13 343 6.84e-104 309
Msa1196130 MtrunA17_Chr4g0041471 46.866 335 171 6 10 341 11 341 7.46e-104 309
Msa1196130 MtrunA17_Chr2g0283901 45.245 347 170 9 8 342 18 356 1.44e-96 295
Msa1196130 MtrunA17_Chr7g0248811 40.936 342 183 8 5 340 6 334 9.58e-91 275
Msa1196130 MtrunA17_Chr7g0248391 47.267 311 145 10 35 341 42 337 2.24e-89 272
Msa1196130 MtrunA17_Chr8g0379151 41.398 372 180 13 1 348 22 379 9.02e-79 246
Msa1196130 MtrunA17_Chr2g0283741 39.450 327 181 10 25 343 43 360 3.54e-75 236
Msa1196130 MtrunA17_Chr0c27g0493921 42.671 307 155 9 41 341 57 348 5.95e-73 230
Msa1196130 MtrunA17_Chr4g0070441 43.357 286 146 8 41 320 57 332 1.02e-69 222
Msa1196130 MtrunA17_Chr2g0283671 51.339 224 104 5 119 341 8 227 1.14e-68 215
Msa1196130 MtrunA17_Chr2g0311471 38.122 362 187 14 1 341 1 346 3.46e-67 215
Msa1196130 MtrunA17_Chr2g0311381 39.385 358 183 17 6 341 5 350 1.38e-65 211
Msa1196130 MtrunA17_Chr1g0155781 40.604 298 151 8 41 321 57 345 3.99e-64 207
Msa1196130 MtrunA17_Chr4g0035551 38.701 354 161 13 7 321 5 341 7.59e-63 204
Msa1196130 MtrunA17_Chr2g0311391 37.113 388 175 19 6 343 5 373 4.35e-60 197
Msa1196130 MtrunA17_Chr1g0199131 35.030 334 183 8 35 349 56 374 2.13e-57 191
Msa1196130 MtrunA17_Chr1g0156161 42.291 227 118 7 119 339 42 261 9.34e-54 178
Msa1196130 MtrunA17_Chr4g0036731 31.928 332 175 8 8 321 7 305 8.76e-47 161
Msa1196130 MtrunA17_Chr4g0036281 32.622 328 173 8 9 321 15 309 2.61e-46 160
Msa1196130 MtrunA17_Chr4g0037291 32.641 337 170 10 8 321 48 350 4.57e-46 161
Msa1196130 MtrunA17_Chr7g0248421 52.349 149 66 3 149 296 57 201 3.75e-44 151
Msa1196130 MtrunA17_Chr2g0283751 32.517 286 161 7 1 262 1 278 3.80e-44 154
Msa1196130 MtrunA17_Chr2g0283661 29.885 348 147 14 9 340 4 270 3.51e-36 132
Msa1196130 MtrunA17_Chr7g0248371 47.706 109 54 3 243 350 34 140 6.18e-31 115
Msa1196130 MtrunA17_Chr1g0156771 53.271 107 45 4 119 221 48 153 1.06e-29 112
Msa1196130 MtrunA17_Chr7g0271041 27.848 316 188 13 48 333 25 330 2.05e-28 113
Msa1196130 MtrunA17_Chr2g0311091 35.450 189 103 6 1 175 1 184 1.32e-27 107
Msa1196130 MtrunA17_Chr7g0271031 30.035 283 165 13 82 340 110 383 3.54e-25 105
Msa1196130 MtrunA17_Chr7g0248661 52.632 76 34 2 267 341 2 76 1.38e-22 90.1
Msa1196130 MtrunA17_Chr8g0379671 36.923 130 71 5 166 293 23 143 1.33e-15 73.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1196130 AT5G43060.1 64.789 355 100 6 9 345 10 357 3.86e-165 469
Msa1196130 AT1G47128.1 61.517 356 111 5 8 345 9 356 2.17e-163 465
Msa1196130 AT4G36880.1 63.095 336 118 2 17 346 31 366 2.37e-159 451
Msa1196130 AT3G19390.1 61.318 349 121 6 1 342 5 346 1.02e-157 450
Msa1196130 AT3G19400.1 59.412 340 127 7 19 353 27 360 1.28e-143 411
Msa1196130 AT4G23520.1 54.155 349 144 7 9 348 15 356 4.60e-135 389
Msa1196130 AT3G48340.1 53.529 340 150 4 9 342 7 344 1.42e-128 373
Msa1196130 AT1G20850.1 53.145 318 145 2 25 342 41 354 5.58e-126 366
Msa1196130 AT4G11310.1 49.716 352 161 5 3 342 6 353 2.25e-121 355
Msa1196130 AT4G11320.2 48.108 370 169 5 3 353 6 371 2.83e-121 355
Msa1196130 AT4G11320.1 48.108 370 169 5 3 353 6 371 2.83e-121 355
Msa1196130 AT4G35350.1 49.704 338 157 4 13 342 21 353 1.08e-120 352
Msa1196130 AT5G50260.1 50.289 346 165 5 1 342 1 343 4.20e-120 351
Msa1196130 AT1G09850.1 49.249 333 162 3 11 342 8 334 5.01e-117 346
Msa1196130 AT1G06260.1 50.000 344 161 6 2 342 8 343 5.09e-116 340
Msa1196130 AT3G48350.1 49.280 347 168 6 1 342 1 344 1.78e-113 334
Msa1196130 AT5G45890.1 49.708 342 160 7 4 341 12 345 4.05e-113 333
Msa1196130 AT3G43960.1 50.284 352 153 13 15 355 18 358 2.16e-106 317
Msa1196130 AT3G19400.2 58.397 262 99 6 19 275 27 283 3.57e-105 310
Msa1196130 AT2G27420.1 45.714 350 178 8 1 341 1 347 2.10e-97 293
Msa1196130 AT2G34080.1 42.151 344 192 5 1 341 5 344 4.11e-94 284
Msa1196130 AT3G49340.1 42.733 344 185 7 6 341 1 340 2.57e-91 277
Msa1196130 AT1G29080.1 41.108 343 193 7 4 341 7 345 5.41e-89 271
Msa1196130 AT4G35350.2 47.601 271 129 4 13 275 21 286 1.39e-87 266
Msa1196130 AT1G29090.1 42.980 349 182 9 6 341 10 354 6.20e-87 266
Msa1196130 AT3G48350.2 45.520 279 146 4 1 275 1 277 4.76e-77 239
Msa1196130 AT5G60360.1 43.182 308 152 9 41 341 65 356 1.01e-74 235
Msa1196130 AT1G29110.1 35.777 341 196 6 10 341 7 333 3.34e-73 230
Msa1196130 AT5G60360.2 42.857 308 152 10 41 341 65 355 3.78e-72 228
Msa1196130 AT5G60360.3 43.206 287 145 8 41 320 65 340 3.14e-70 224
Msa1196130 AT3G45310.1 41.883 308 156 9 41 341 65 356 3.20e-69 221
Msa1196130 AT3G45310.2 41.558 308 156 10 41 341 65 355 1.13e-66 214
Msa1196130 AT4G39090.1 38.644 295 157 5 41 319 57 343 1.38e-62 204
Msa1196130 AT2G21430.1 35.922 309 171 6 27 319 43 340 2.21e-60 198
Msa1196130 AT3G54940.2 35.692 325 179 8 35 338 51 366 3.62e-59 195
Msa1196130 AT4G16190.1 35.987 314 173 9 28 321 45 350 1.12e-55 186
Msa1196130 AT3G54940.3 35.622 233 133 4 35 257 51 276 6.62e-42 148
Msa1196130 AT1G02305.1 29.393 313 180 14 73 354 59 361 1.07e-26 109
Msa1196130 AT4G01610.1 27.018 285 176 11 72 333 55 330 1.14e-22 97.8
Msa1196130 AT4G01610.2 26.316 285 178 11 72 333 55 330 1.29e-20 92.0
Msa1196130 AT1G02300.1 30.516 213 117 9 144 333 146 350 2.73e-16 79.7
Msa1196130 AT2G22160.1 30.851 94 60 1 51 144 10 98 4.77e-11 59.7

Find 107 sgRNAs with CRISPR-Local

Find 168 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGAATATCGCAACATGTATT+TGG 0.152793 8_1:-44897159 Msa1196130:CDS
ATTGAATTATATATGCTTAT+TGG 0.155563 8_1:-44894801 Msa1196130:three_prime_UTR
CTGAAAATGGTGTTGATTAT+TGG 0.240301 8_1:-44895035 Msa1196130:CDS
GTTGGATATGGTTCTGAAAA+TGG 0.244091 8_1:-44895048 Msa1196130:CDS
ATTAAAATGCTTACCCTTGT+TGG 0.270555 8_1:+44895600 None:intergenic
GGAACTCATGGGGCACAAAC+TGG 0.305715 8_1:-44895005 Msa1196130:CDS
GGTGTGGTTGTTGTTGGATA+TGG 0.309222 8_1:-44895060 Msa1196130:CDS
TTTGAATTCATCGTTGAAAA+TGG 0.320532 8_1:-44895678 Msa1196130:CDS
TTCCTTGATCACTTTGTCAT+TGG 0.330785 8_1:-44897390 Msa1196130:CDS
CATAAGGTGTATAATGGTTT+AGG 0.340198 8_1:-44897299 Msa1196130:CDS
TGTACTTCACAGGAAGTTGC+TGG 0.341497 8_1:-44895839 Msa1196130:intron
TTGCTATTGAGGCCGGTGGC+AGG 0.347942 8_1:-44895304 Msa1196130:CDS
CTAAACCATTATACACCTTA+TGG 0.348204 8_1:+44897300 None:intergenic
ACCATACTTCACTGGGTATG+AGG 0.376443 8_1:+44894906 None:intergenic
AATTCCACACTTTCCTGTAT+TGG 0.376785 8_1:+44894939 None:intergenic
CCGGTGACCGGTGGTGATCT+TGG 0.378957 8_1:+44897100 None:intergenic
AAACACCATAAGGTGTATAA+TGG 0.383316 8_1:-44897305 Msa1196130:CDS
AAAGAAGAGCAAGGATGTTA+TGG 0.388472 8_1:+44897412 None:intergenic
GGTTGCCTGTGCATGTTGAT+TGG 0.401016 8_1:-44897055 Msa1196130:CDS
GCCAAGGTAGTGAGCATTGA+TGG 0.412005 8_1:-44895395 Msa1196130:CDS
GATCATGGTGTGGTTGTTGT+TGG 0.414909 8_1:-44895066 Msa1196130:CDS
GAATATCGCAACATGTATTT+GGG 0.415509 8_1:-44897158 Msa1196130:CDS
ATAAGCATATATAATTCAAT+AGG 0.419418 8_1:+44894804 None:intergenic
GCCTCATACCCAGTGAAGTA+TGG 0.426327 8_1:-44894907 Msa1196130:CDS
CAAAATTACACATACAAAGT+AGG 0.430615 8_1:-44897212 Msa1196130:CDS
TTGATGCCATGGTTGGTGTT+TGG 0.432551 8_1:+44897438 None:intergenic
GAACTCATGGGGCACAAACT+GGG 0.439893 8_1:-44895004 Msa1196130:CDS
CTGCCCTCAAATCCCTTGTA+TGG 0.445182 8_1:+44895630 None:intergenic
CGGTAGATGTGGAACAAACT+TGG 0.448781 8_1:-44895088 Msa1196130:CDS
GTGTTTGGCTACGGAGAGAA+AGG 0.453638 8_1:+44897453 None:intergenic
GCTATAAACAAAATAGTGAC+AGG 0.472984 8_1:-44895789 Msa1196130:CDS
TGCTATTGAGGCCGGTGGCA+GGG 0.475813 8_1:-44895303 Msa1196130:CDS
TTAGGCTTTGATGAACTAGT+TGG 0.479954 8_1:+44897480 None:intergenic
TATCCATACAAGGGATTTGA+GGG 0.490268 8_1:-44895633 Msa1196130:CDS
GGCTTTGCAGCTCTATCAAT+CGG 0.492907 8_1:-44895282 Msa1196130:intron
TTTAACACTTCAGATATTGT+TGG 0.496462 8_1:+44894831 None:intergenic
CCATGGTTGGTGTTTGGCTA+CGG 0.499965 8_1:+44897444 None:intergenic
ATTGGTTGGTGAGGAACTCA+TGG 0.501730 8_1:-44895017 Msa1196130:CDS
GGCACAAACTGGGGTGAAGA+AGG 0.502960 8_1:-44894994 Msa1196130:CDS
ATGGTTGGTAAAACACCATA+AGG 0.503486 8_1:-44897315 Msa1196130:CDS
CAAGTTTGTTCCACATCTAC+CGG 0.505337 8_1:+44895089 None:intergenic
TGCCAATGACAAAGTGATCA+AGG 0.505373 8_1:+44897388 None:intergenic
GCTGGTACAAATTGATATTG+AGG 0.511728 8_1:+44894730 None:intergenic
CTATCCATACAAGGGATTTG+AGG 0.526290 8_1:-44895634 Msa1196130:CDS
TCCATCAATGCTCACTACCT+TGG 0.527147 8_1:+44895394 None:intergenic
ATTAAAAGCATACCGGTGAC+CGG 0.528807 8_1:+44897088 None:intergenic
GATCACTTTGTCATTGGCAA+TGG 0.530628 8_1:-44897384 Msa1196130:CDS
AACACTTCAGATATTGTTGG+TGG 0.530989 8_1:+44894834 None:intergenic
ACCTGTGAGTGTTGCTATTG+AGG 0.533824 8_1:-44895315 Msa1196130:CDS
AACCTCCTCGTTACTACGCA+TGG 0.534905 8_1:+44897355 None:intergenic
AAAATTACACATACAAAGTA+GGG 0.535927 8_1:-44897211 Msa1196130:CDS
TGTGATAGAGCTTTCAATGA+AGG 0.543376 8_1:-44895729 Msa1196130:CDS
GTGATAGAGCTTTCAATGAA+GGG 0.544650 8_1:-44895728 Msa1196130:CDS
TTCAATGAAGGGTGCAATGG+TGG 0.551502 8_1:-44895717 Msa1196130:CDS
CAAATAACAGTAGTGAAAGC+TGG 0.551939 8_1:+44894712 None:intergenic
GCCTCAATAGCAACACTCAC+AGG 0.554592 8_1:+44895314 None:intergenic
TACGGAGAGAAAGGGTGGTT+AGG 0.557405 8_1:+44897462 None:intergenic
GTACTTCACAGGAAGTTGCT+GGG 0.560605 8_1:-44895838 Msa1196130:intron
TGAACAAGACTATCCATACA+AGG 0.565666 8_1:-44895643 Msa1196130:CDS
GACCTCCAATCAACATGCAC+AGG 0.565711 8_1:+44897050 None:intergenic
GAATTCATCGTTGAAAATGG+TGG 0.566710 8_1:-44895675 Msa1196130:CDS
AGGGTGCAATGGTGGTCTCA+TGG 0.567177 8_1:-44895709 Msa1196130:CDS
ATCAAAGATCAAGGAAGTTG+TGG 0.567766 8_1:-44897008 Msa1196130:intron
CCAAGATCACCACCGGTCAC+CGG 0.568353 8_1:-44897100 Msa1196130:CDS
ATGGTGATTGATGCCATGGT+TGG 0.571355 8_1:+44897431 None:intergenic
GTTGCTCGTATCAAAGATCA+AGG 0.571746 8_1:-44897017 Msa1196130:CDS
GAGCTGCAAAGCCCTGCCAC+CGG 0.577972 8_1:+44895292 None:intergenic
AACTCATGGGGCACAAACTG+GGG 0.578307 8_1:-44895003 Msa1196130:CDS
TTGGTTGGTGAGGAACTCAT+GGG 0.579060 8_1:-44895016 Msa1196130:CDS
TTATGAACATGTACGAGGAA+TGG 0.579501 8_1:-44897334 Msa1196130:CDS
TGCCTGTGCATGTTGATTGG+AGG 0.581463 8_1:-44897052 Msa1196130:CDS
ACTTCAGATATTGTTGGTGG+TGG 0.582028 8_1:+44894837 None:intergenic
GTGAGTGTTGCTATTGAGGC+CGG 0.589717 8_1:-44895311 Msa1196130:CDS
AAGACCAATACAGGAAAGTG+TGG 0.590273 8_1:-44894943 Msa1196130:CDS
GGTGTATTTACCGGTAGATG+TGG 0.590389 8_1:-44895099 Msa1196130:CDS
TGTTATGGTGATTGATGCCA+TGG 0.590826 8_1:+44897427 None:intergenic
GAACATGTACGAGGAATGGT+TGG 0.591249 8_1:-44897330 Msa1196130:CDS
AGGGCAGATGTGATCCAACA+AGG 0.596696 8_1:-44895614 Msa1196130:CDS
CACCGGAATTAAAAGCATAC+CGG 0.600520 8_1:+44897081 None:intergenic
GCTTTCAATGAAGGGTGCAA+TGG 0.603342 8_1:-44895720 Msa1196130:CDS
ATGCACAGGCAACCGATCAC+CGG 0.604071 8_1:+44897064 None:intergenic
AAATGGTGTTGATTATTGGT+TGG 0.606212 8_1:-44895031 Msa1196130:CDS
GTTTAGGAGAGAAAGATCGA+AGG 0.607500 8_1:-44897283 Msa1196130:CDS
GTGTTGATTATTGGTTGGTG+AGG 0.611108 8_1:-44895026 Msa1196130:CDS
TGTGGAACAAACTTGGATCA+TGG 0.612535 8_1:-44895081 Msa1196130:CDS
GATCAAGGAAAAGAAGAGCA+AGG 0.613129 8_1:+44897403 None:intergenic
CATGTTGATTGGAGGTCGAA+AGG 0.619027 8_1:-44897044 Msa1196130:CDS
GAGGAGTGATGCCAAACGTA+GGG 0.622581 8_1:-44897132 Msa1196130:CDS
TGTTTGGCTACGGAGAGAAA+GGG 0.628243 8_1:+44897454 None:intergenic
CACGTCCATGCGTAGTAACG+AGG 0.636349 8_1:-44897360 Msa1196130:CDS
ATGAAAACCAAGATCACCAC+CGG 0.640415 8_1:-44897107 Msa1196130:CDS
CTATAAACAAAATAGTGACA+GGG 0.655594 8_1:-44895788 Msa1196130:CDS
CGAGGAGTGATGCCAAACGT+AGG 0.659483 8_1:-44897133 Msa1196130:CDS
CCGTAGCCAAACACCAACCA+TGG 0.667989 8_1:-44897444 Msa1196130:exon
TTGGCTACGGAGAGAAAGGG+TGG 0.676716 8_1:+44897457 None:intergenic
AGTGTTGCTATTGAGGCCGG+TGG 0.679573 8_1:-44895308 Msa1196130:CDS
AAAAGCATACCGGTGACCGG+TGG 0.684937 8_1:+44897091 None:intergenic
AACAAACTTGGATCATGGTG+TGG 0.692394 8_1:-44895076 Msa1196130:CDS
GAACAAGACTATCCATACAA+GGG 0.692415 8_1:-44895642 Msa1196130:CDS
GGGCAGATGTGATCCAACAA+GGG 0.694740 8_1:-44895613 Msa1196130:intron
GCAACATGTATTTGGGCACG+AGG 0.696732 8_1:-44897151 Msa1196130:CDS
TTTGTTTATAGCTTCCACTG+TGG 0.711165 8_1:+44895800 None:intergenic
TGGTTGGTGAGGAACTCATG+GGG 0.718625 8_1:-44895015 Msa1196130:CDS
GTCCATGCGTAGTAACGAGG+AGG 0.719075 8_1:-44897357 Msa1196130:CDS
GTTTGCTGATATGACTAACG+AGG 0.737032 8_1:-44897180 Msa1196130:CDS
GGAGGTTATGAACATGTACG+AGG 0.768455 8_1:-44897339 Msa1196130:CDS
GTTCTCAACAATAGCCACAG+TGG 0.769143 8_1:-44895814 Msa1196130:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAATAAATTGCAAAATTAT+AGG + chr8_1:44895182-44895201 None:intergenic 10.0%
!!! ATATTCTTAATAAACTATTT+TGG + chr8_1:44895517-44895536 None:intergenic 10.0%
!! AGTTTATTAAGAATATAAAT+AGG - chr8_1:44895551-44895570 Msa1196130:intron 10.0%
!!! TGATCATTAATTTTATTTTT+AGG - chr8_1:44896083-44896102 Msa1196130:intron 10.0%
!!! TAGTATTTTTTATTAGTATA+AGG + chr8_1:44896586-44896605 None:intergenic 10.0%
!! GATAATATTAAAAATAACTA+TGG - chr8_1:44896609-44896628 Msa1196130:intron 10.0%
!!! ATTGTTTTTCTAATAATATA+TGG - chr8_1:44896702-44896721 Msa1196130:intron 10.0%
!!! TTGTTTTTCTAATAATATAT+GGG - chr8_1:44896703-44896722 Msa1196130:intron 10.0%
!!! GAAATTTTTAAGGATAATTT+AGG - chr8_1:44894888-44894907 Msa1196130:CDS 15.0%
!! AATTTAAATAAAGTCCTTAA+GGG + chr8_1:44895256-44895275 None:intergenic 15.0%
!! AAATTTAAATAAAGTCCTTA+AGG + chr8_1:44895257-44895276 None:intergenic 15.0%
!! AAAAGGATTTAAACATATAT+CGG + chr8_1:44895301-44895320 None:intergenic 15.0%
!! CAAAAAGAACTATATAAAAA+AGG + chr8_1:44895318-44895337 None:intergenic 15.0%
!! AAGAACTATATAAAAGATAA+AGG + chr8_1:44895363-44895382 None:intergenic 15.0%
!!! TTTTTTTTAAATACTTTGAG+AGG - chr8_1:44895476-44895495 Msa1196130:intron 15.0%
!!! TTAAGCTAATAAATTTTCAT+CGG - chr8_1:44895721-44895740 Msa1196130:CDS 15.0%
!!! AATATTTTTACTCAATTACA+TGG - chr8_1:44895880-44895899 Msa1196130:intron 15.0%
!! TTTAGCACAAATAAATTAAA+GGG + chr8_1:44896148-44896167 None:intergenic 15.0%
!! AACAAACTTTGATTAAAAAT+TGG - chr8_1:44896166-44896185 Msa1196130:intron 15.0%
!! GAAACTAATGAATTATTATA+TGG - chr8_1:44896968-44896987 Msa1196130:intron 15.0%
!!! TGACTATATAATTTTTTTCA+GGG - chr8_1:44897025-44897044 Msa1196130:CDS 15.0%
!! ATAAGCATATATAATTCAAT+AGG + chr8_1:44897344-44897363 None:intergenic 15.0%
!! ATTGAATTATATATGCTTAT+TGG - chr8_1:44897344-44897363 Msa1196130:CDS 15.0%
!! AAAATTACACATACAAAGTA+GGG - chr8_1:44894934-44894953 Msa1196130:CDS 20.0%
!!! GCAATTTATTTTGTTTGTTA+AGG - chr8_1:44895190-44895209 Msa1196130:intron 20.0%
!!! TTATTTTGTTTGTTAAGGTT+TGG - chr8_1:44895195-44895214 Msa1196130:intron 20.0%
!! TATATAATAATAGATGCAAG+TGG + chr8_1:44895421-44895440 None:intergenic 20.0%
!!! GGAATTTATGTATATACTTT+TGG + chr8_1:44895602-44895621 None:intergenic 20.0%
!!! GTAGTTTTTTTTTTTCTATC+TGG - chr8_1:44895816-44895835 Msa1196130:CDS 20.0%
!! GTTTAGCACAAATAAATTAA+AGG + chr8_1:44896149-44896168 None:intergenic 20.0%
!! GATTAAAAATTGGTAAGTAA+TGG - chr8_1:44896176-44896195 Msa1196130:intron 20.0%
!!! CTGACTATATAATTTTTTTC+AGG - chr8_1:44897024-44897043 Msa1196130:CDS 20.0%
!!! TCGAAGGTTTGAAATTTTTA+AGG - chr8_1:44894878-44894897 Msa1196130:CDS 25.0%
! CAAAATTACACATACAAAGT+AGG - chr8_1:44894933-44894952 Msa1196130:CDS 25.0%
!!! GGATAAGTAACCTTTTTTTT+AGG + chr8_1:44895235-44895254 None:intergenic 25.0%
!!! ACTTTTGGTAATTGTACTTT+TGG + chr8_1:44895587-44895606 None:intergenic 25.0%
! CACTCATATTCTAAATAGAT+TGG + chr8_1:44895623-44895642 None:intergenic 25.0%
!!! AAGCTTTAGATAAGACTTTT+TGG - chr8_1:44896043-44896062 Msa1196130:intron 25.0%
! AAAAATTGGTAAGTAATGGT+AGG - chr8_1:44896180-44896199 Msa1196130:intron 25.0%
! AATAGTCCAATATTTAACTG+AGG + chr8_1:44896240-44896259 None:intergenic 25.0%
! TCAGTTAAATATTGGACTAT+TGG - chr8_1:44896239-44896258 Msa1196130:intron 25.0%
! CTATAAACAAAATAGTGACA+GGG - chr8_1:44896357-44896376 Msa1196130:intron 25.0%
!! ATTTTCAACGATGAATTCAA+AGG + chr8_1:44896468-44896487 None:intergenic 25.0%
! TTTGAATTCATCGTTGAAAA+TGG - chr8_1:44896467-44896486 Msa1196130:intron 25.0%
!! AATGCATTTTCATTATAAGC+TGG + chr8_1:44896789-44896808 None:intergenic 25.0%
! TTTAACACTTCAGATATTGT+TGG + chr8_1:44897317-44897336 None:intergenic 25.0%
AAACACCATAAGGTGTATAA+TGG - chr8_1:44894840-44894859 Msa1196130:three_prime_UTR 30.0%
CTAAACCATTATACACCTTA+TGG + chr8_1:44894848-44894867 None:intergenic 30.0%
CATAAGGTGTATAATGGTTT+AGG - chr8_1:44894846-44894865 Msa1196130:three_prime_UTR 30.0%
GAATATCGCAACATGTATTT+GGG - chr8_1:44894987-44895006 Msa1196130:CDS 30.0%
!! AGTTGTGGTAAGTTTGTTTT+AGG - chr8_1:44895152-44895171 Msa1196130:intron 30.0%
!!! GTTGTGGTAAGTTTGTTTTA+GGG - chr8_1:44895153-44895172 Msa1196130:intron 30.0%
AAAAGGTTACTTATCCCTTA+AGG - chr8_1:44895239-44895258 Msa1196130:intron 30.0%
!! TTGGTAATTGTACTTTTGGA+CGG + chr8_1:44895583-44895602 None:intergenic 30.0%
AAATTAAGATCACGTGTTCA+TGG + chr8_1:44895966-44895985 None:intergenic 30.0%
GTTTGACCTCAGTTAAATAT+TGG - chr8_1:44896231-44896250 Msa1196130:intron 30.0%
! TACATTTTCTTGTACTTCAC+AGG - chr8_1:44896296-44896315 Msa1196130:intron 30.0%
GCTATAAACAAAATAGTGAC+AGG - chr8_1:44896356-44896375 Msa1196130:intron 30.0%
ATTAAAATGCTTACCCTTGT+TGG + chr8_1:44896548-44896567 None:intergenic 30.0%
GTTGTTCGATCAAAATTAGA+CGG - chr8_1:44896923-44896942 Msa1196130:intron 30.0%
!!! TTTTTTCAGGGTGTATTTAC+CGG - chr8_1:44897037-44897056 Msa1196130:CDS 30.0%
!! CTGAAAATGGTGTTGATTAT+TGG - chr8_1:44897110-44897129 Msa1196130:CDS 30.0%
!! AAATGGTGTTGATTATTGGT+TGG - chr8_1:44897114-44897133 Msa1196130:CDS 30.0%
AATGTGAAAAAGACCAATAC+AGG - chr8_1:44897193-44897212 Msa1196130:CDS 30.0%
AAAGAAGAGCAAGGATGTTA+TGG + chr8_1:44894736-44894755 None:intergenic 35.0%
TTCCTTGATCACTTTGTCAT+TGG - chr8_1:44894755-44894774 Msa1196130:three_prime_UTR 35.0%
TTATGAACATGTACGAGGAA+TGG - chr8_1:44894811-44894830 Msa1196130:three_prime_UTR 35.0%
!! ATGGTTGGTAAAACACCATA+AGG - chr8_1:44894830-44894849 Msa1196130:three_prime_UTR 35.0%
GGAATATCGCAACATGTATT+TGG - chr8_1:44894986-44895005 Msa1196130:CDS 35.0%
!! ATGCTTTTAATTCCGGTGAT+CGG - chr8_1:44895069-44895088 Msa1196130:CDS 35.0%
ATCAAAGATCAAGGAAGTTG+TGG - chr8_1:44895137-44895156 Msa1196130:intron 35.0%
! GTTAAGGTTTGGTTACGTAT+CGG - chr8_1:44895206-44895225 Msa1196130:intron 35.0%
GTATCGGATGCCTAAAAAAA+AGG - chr8_1:44895222-44895241 Msa1196130:intron 35.0%
! ACTTTCTCTTTTCCCAACAA+AGG - chr8_1:44895395-44895414 Msa1196130:CDS 35.0%
ATTGGTAAGTAATGGTAGGT+TGG - chr8_1:44896184-44896203 Msa1196130:intron 35.0%
TTTGTTTATAGCTTCCACTG+TGG + chr8_1:44896348-44896367 None:intergenic 35.0%
TGTGATAGAGCTTTCAATGA+AGG - chr8_1:44896416-44896435 Msa1196130:intron 35.0%
GTGATAGAGCTTTCAATGAA+GGG - chr8_1:44896417-44896436 Msa1196130:intron 35.0%
GAATTCATCGTTGAAAATGG+TGG - chr8_1:44896470-44896489 Msa1196130:intron 35.0%
TGAACAAGACTATCCATACA+AGG - chr8_1:44896502-44896521 Msa1196130:intron 35.0%
GAACAAGACTATCCATACAA+GGG - chr8_1:44896503-44896522 Msa1196130:intron 35.0%
TATCCATACAAGGGATTTGA+GGG - chr8_1:44896512-44896531 Msa1196130:intron 35.0%
TCTTGCTTCGAGCTTAAATA+TGG + chr8_1:44896950-44896969 None:intergenic 35.0%
!! GTTGGATATGGTTCTGAAAA+TGG - chr8_1:44897097-44897116 Msa1196130:CDS 35.0%
AATTCCACACTTTCCTGTAT+TGG + chr8_1:44897209-44897228 None:intergenic 35.0%
!! AGTTTTGACCATACTTCACT+GGG + chr8_1:44897249-44897268 None:intergenic 35.0%
AACACTTCAGATATTGTTGG+TGG + chr8_1:44897314-44897333 None:intergenic 35.0%
GCTGGTACAAATTGATATTG+AGG + chr8_1:44897418-44897437 None:intergenic 35.0%
CAAATAACAGTAGTGAAAGC+TGG + chr8_1:44897436-44897455 None:intergenic 35.0%
TGTTATGGTGATTGATGCCA+TGG + chr8_1:44894721-44894740 None:intergenic 40.0%
GATCAAGGAAAAGAAGAGCA+AGG + chr8_1:44894745-44894764 None:intergenic 40.0%
TGCCAATGACAAAGTGATCA+AGG + chr8_1:44894760-44894779 None:intergenic 40.0%
GATCACTTTGTCATTGGCAA+TGG - chr8_1:44894761-44894780 Msa1196130:three_prime_UTR 40.0%
GTTTAGGAGAGAAAGATCGA+AGG - chr8_1:44894862-44894881 Msa1196130:exon 40.0%
! GTTTGCTGATATGACTAACG+AGG - chr8_1:44894965-44894984 Msa1196130:CDS 40.0%
! GGTTTTCATAACCCTACGTT+TGG + chr8_1:44895027-44895046 None:intergenic 40.0%
ATGAAAACCAAGATCACCAC+CGG - chr8_1:44895038-44895057 Msa1196130:CDS 40.0%
! ATTAAAAGCATACCGGTGAC+CGG + chr8_1:44895060-44895079 None:intergenic 40.0%
!! CACCGGTATGCTTTTAATTC+CGG - chr8_1:44895062-44895081 Msa1196130:CDS 40.0%
! CACCGGAATTAAAAGCATAC+CGG + chr8_1:44895067-44895086 None:intergenic 40.0%
GTTGCTCGTATCAAAGATCA+AGG - chr8_1:44895128-44895147 Msa1196130:intron 40.0%
CTATCCATACAAGGGATTTG+AGG - chr8_1:44896511-44896530 Msa1196130:intron 40.0%
AATGCTGCAGAAAAATGCCA+AGG - chr8_1:44896734-44896753 Msa1196130:intron 40.0%
! CAAGTTTGTTCCACATCTAC+CGG + chr8_1:44897059-44897078 None:intergenic 40.0%
TGTGGAACAAACTTGGATCA+TGG - chr8_1:44897064-44897083 Msa1196130:CDS 40.0%
AACAAACTTGGATCATGGTG+TGG - chr8_1:44897069-44897088 Msa1196130:CDS 40.0%
!! GTGTTGATTATTGGTTGGTG+AGG - chr8_1:44897119-44897138 Msa1196130:CDS 40.0%
AAGACCAATACAGGAAAGTG+TGG - chr8_1:44897202-44897221 Msa1196130:CDS 40.0%
!! GAGTTTTGACCATACTTCAC+TGG + chr8_1:44897250-44897269 None:intergenic 40.0%
! ACTTCAGATATTGTTGGTGG+TGG + chr8_1:44897311-44897330 None:intergenic 40.0%
TGTTTGGCTACGGAGAGAAA+GGG + chr8_1:44894694-44894713 None:intergenic 45.0%
! TTGATGCCATGGTTGGTGTT+TGG + chr8_1:44894710-44894729 None:intergenic 45.0%
ATGGTGATTGATGCCATGGT+TGG + chr8_1:44894717-44894736 None:intergenic 45.0%
GGAGGTTATGAACATGTACG+AGG - chr8_1:44894806-44894825 Msa1196130:three_prime_UTR 45.0%
GAACATGTACGAGGAATGGT+TGG - chr8_1:44894815-44894834 Msa1196130:three_prime_UTR 45.0%
! CATGTTGATTGGAGGTCGAA+AGG - chr8_1:44895101-44895120 Msa1196130:CDS 45.0%
AGATGCAAGTGGCCTTTGTT+GGG + chr8_1:44895410-44895429 None:intergenic 45.0%
TAGATGCAAGTGGCCTTTGT+TGG + chr8_1:44895411-44895430 None:intergenic 45.0%
TGTACTTCACAGGAAGTTGC+TGG - chr8_1:44896306-44896325 Msa1196130:intron 45.0%
GTACTTCACAGGAAGTTGCT+GGG - chr8_1:44896307-44896326 Msa1196130:intron 45.0%
GTTCTCAACAATAGCCACAG+TGG - chr8_1:44896331-44896350 Msa1196130:intron 45.0%
! GCTTTCAATGAAGGGTGCAA+TGG - chr8_1:44896425-44896444 Msa1196130:intron 45.0%
! TTCAATGAAGGGTGCAATGG+TGG - chr8_1:44896428-44896447 Msa1196130:intron 45.0%
TCCATCAATGCTCACTACCT+TGG + chr8_1:44896754-44896773 None:intergenic 45.0%
! ACCTGTGAGTGTTGCTATTG+AGG - chr8_1:44896830-44896849 Msa1196130:intron 45.0%
GGCTTTGCAGCTCTATCAAT+CGG - chr8_1:44896863-44896882 Msa1196130:intron 45.0%
GGTGTATTTACCGGTAGATG+TGG - chr8_1:44897046-44897065 Msa1196130:CDS 45.0%
CGGTAGATGTGGAACAAACT+TGG - chr8_1:44897057-44897076 Msa1196130:CDS 45.0%
GATCATGGTGTGGTTGTTGT+TGG - chr8_1:44897079-44897098 Msa1196130:CDS 45.0%
! GGTGTGGTTGTTGTTGGATA+TGG - chr8_1:44897085-44897104 Msa1196130:CDS 45.0%
!! ATTGGTTGGTGAGGAACTCA+TGG - chr8_1:44897128-44897147 Msa1196130:CDS 45.0%
!! TTGGTTGGTGAGGAACTCAT+GGG - chr8_1:44897129-44897148 Msa1196130:CDS 45.0%
ACCATACTTCACTGGGTATG+AGG + chr8_1:44897242-44897261 None:intergenic 45.0%
TACGGAGAGAAAGGGTGGTT+AGG + chr8_1:44894686-44894705 None:intergenic 50.0%
GTGTTTGGCTACGGAGAGAA+AGG + chr8_1:44894695-44894714 None:intergenic 50.0%
! CCATGGTTGGTGTTTGGCTA+CGG + chr8_1:44894704-44894723 None:intergenic 50.0%
AACCTCCTCGTTACTACGCA+TGG + chr8_1:44894793-44894812 None:intergenic 50.0%
GCAACATGTATTTGGGCACG+AGG - chr8_1:44894994-44895013 Msa1196130:CDS 50.0%
GAGGAGTGATGCCAAACGTA+GGG - chr8_1:44895013-44895032 Msa1196130:CDS 50.0%
GGTTGCCTGTGCATGTTGAT+TGG - chr8_1:44895090-44895109 Msa1196130:CDS 50.0%
! TGCCTGTGCATGTTGATTGG+AGG - chr8_1:44895093-44895112 Msa1196130:CDS 50.0%
GACCTCCAATCAACATGCAC+AGG + chr8_1:44895098-44895117 None:intergenic 50.0%
CTGCCCTCAAATCCCTTGTA+TGG + chr8_1:44896518-44896537 None:intergenic 50.0%
AGGGCAGATGTGATCCAACA+AGG - chr8_1:44896531-44896550 Msa1196130:intron 50.0%
GGGCAGATGTGATCCAACAA+GGG - chr8_1:44896532-44896551 Msa1196130:intron 50.0%
!! GCCAAGGTAGTGAGCATTGA+TGG - chr8_1:44896750-44896769 Msa1196130:intron 50.0%
GCCTCAATAGCAACACTCAC+AGG + chr8_1:44896834-44896853 None:intergenic 50.0%
! GTGAGTGTTGCTATTGAGGC+CGG - chr8_1:44896834-44896853 Msa1196130:intron 50.0%
!! TGGTTGGTGAGGAACTCATG+GGG - chr8_1:44897130-44897149 Msa1196130:CDS 50.0%
GAACTCATGGGGCACAAACT+GGG - chr8_1:44897141-44897160 Msa1196130:CDS 50.0%
AACTCATGGGGCACAAACTG+GGG - chr8_1:44897142-44897161 Msa1196130:CDS 50.0%
GCCTCATACCCAGTGAAGTA+TGG - chr8_1:44897238-44897257 Msa1196130:CDS 50.0%
TTGGCTACGGAGAGAAAGGG+TGG + chr8_1:44894691-44894710 None:intergenic 55.0%
CCGTAGCCAAACACCAACCA+TGG - chr8_1:44894701-44894720 Msa1196130:three_prime_UTR 55.0%
CACGTCCATGCGTAGTAACG+AGG - chr8_1:44894785-44894804 Msa1196130:three_prime_UTR 55.0%
GTCCATGCGTAGTAACGAGG+AGG - chr8_1:44894788-44894807 Msa1196130:three_prime_UTR 55.0%
CGAGGAGTGATGCCAAACGT+AGG - chr8_1:44895012-44895031 Msa1196130:CDS 55.0%
! AAAAGCATACCGGTGACCGG+TGG + chr8_1:44895057-44895076 None:intergenic 55.0%
ATGCACAGGCAACCGATCAC+CGG + chr8_1:44895084-44895103 None:intergenic 55.0%
AGGGTGCAATGGTGGTCTCA+TGG - chr8_1:44896436-44896455 Msa1196130:intron 55.0%
! AGTGTTGCTATTGAGGCCGG+TGG - chr8_1:44896837-44896856 Msa1196130:intron 55.0%
GGAACTCATGGGGCACAAAC+TGG - chr8_1:44897140-44897159 Msa1196130:CDS 55.0%
GGCACAAACTGGGGTGAAGA+AGG - chr8_1:44897151-44897170 Msa1196130:CDS 55.0%
CCAAGATCACCACCGGTCAC+CGG - chr8_1:44895045-44895064 Msa1196130:CDS 60.0%
! TTGCTATTGAGGCCGGTGGC+AGG - chr8_1:44896841-44896860 Msa1196130:intron 60.0%
TGCTATTGAGGCCGGTGGCA+GGG - chr8_1:44896842-44896861 Msa1196130:intron 60.0%
CCGGTGACCGGTGGTGATCT+TGG + chr8_1:44895048-44895067 None:intergenic 65.0%
GAGCTGCAAAGCCCTGCCAC+CGG + chr8_1:44896856-44896875 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 44894667 44897500 44894667 ID=Msa1196130;Name=Msa1196130
chr8_1 mRNA 44894667 44897500 44894667 ID=Msa1196130-mRNA-1;Parent=Msa1196130;Name=Msa1196130-mRNA-1;_AED=0.08;_eAED=0.08;_QI=53|1|1|1|1|1|4|203|355
chr8_1 exon 44894667 44895121 44894667 ID=Msa1196130-mRNA-1:exon:14447;Parent=Msa1196130-mRNA-1
chr8_1 exon 44895283 44895423 44895283 ID=Msa1196130-mRNA-1:exon:14446;Parent=Msa1196130-mRNA-1
chr8_1 exon 44895614 44895849 44895614 ID=Msa1196130-mRNA-1:exon:14445;Parent=Msa1196130-mRNA-1
chr8_1 exon 44897009 44897500 44897009 ID=Msa1196130-mRNA-1:exon:14444;Parent=Msa1196130-mRNA-1
chr8_1 five_prime_UTR 44897448 44897500 44897448 ID=Msa1196130-mRNA-1:five_prime_utr;Parent=Msa1196130-mRNA-1
chr8_1 CDS 44897009 44897447 44897009 ID=Msa1196130-mRNA-1:cds;Parent=Msa1196130-mRNA-1
chr8_1 CDS 44895614 44895849 44895614 ID=Msa1196130-mRNA-1:cds;Parent=Msa1196130-mRNA-1
chr8_1 CDS 44895283 44895423 44895283 ID=Msa1196130-mRNA-1:cds;Parent=Msa1196130-mRNA-1
chr8_1 CDS 44894870 44895121 44894870 ID=Msa1196130-mRNA-1:cds;Parent=Msa1196130-mRNA-1
chr8_1 three_prime_UTR 44894667 44894869 44894667 ID=Msa1196130-mRNA-1:three_prime_utr;Parent=Msa1196130-mRNA-1
Gene Sequence

>Msa1196130

ATGGCATCAATCACCATAACATCCTTGCTCTTCTTTTCCTTGATCACTTTGTCATTGGCAATGGACACGTCCATGCGTAGTAACGAGGAGGTTATGAACATGTACGAGGAATGGTTGGTAAAACACCATAAGGTGTATAATGGTTTAGGAGAGAAAGATCGAAGGTTTGAAATTTTTAAGGATAATTTAGGATTCATCGATGAACACAATGCTCAAAATTACACATACAAAGTAGGGTTGAACAAGTTTGCTGATATGACTAACGAGGAATATCGCAACATGTATTTGGGCACGAGGAGTGATGCCAAACGTAGGGTTATGAAAACCAAGATCACCACCGGTCACCGGTATGCTTTTAATTCCGGTGATCGGTTGCCTGTGCATGTTGATTGGAGGTCGAAAGGTGCAGTTGCTCGTATCAAAGATCAAGGAAGTTGTGGAAGTTGCTGGGCGTTCTCAACAATAGCCACAGTGGAAGCTATAAACAAAATAGTGACAGGGAAGCTTGTGTCTTTGTCTGAACAAGAGCTTGTTGATTGTGATAGAGCTTTCAATGAAGGGTGCAATGGTGGTCTCATGGACTATGCCTTTGAATTCATCGTTGAAAATGGTGGCATAGACACTGAACAAGACTATCCATACAAGGGATTTGAGGGCAGATGTGATCCAACAAGGAAAAATGCCAAGGTAGTGAGCATTGATGGATATGAAGATGTTCCAGCTTATAATGAAAATGCATTAAAGAAAGCTGTTTCTCATCAACCTGTGAGTGTTGCTATTGAGGCCGGTGGCAGGGCTTTGCAGCTCTATCAATCGGGTGTATTTACCGGTAGATGTGGAACAAACTTGGATCATGGTGTGGTTGTTGTTGGATATGGTTCTGAAAATGGTGTTGATTATTGGTTGGTGAGGAACTCATGGGGCACAAACTGGGGTGAAGAAGGTTACTTCAAGTTAGAACGTAATGTGAAAAAGACCAATACAGGAAAGTGTGGAATTGCAATGCAAGCCTCATACCCAGTGAAGTATGGTCAAAACTCTGCTGAAGTGCTTGTTAGCAGTGCTTGA

Protein sequence

>Msa1196130

MASITITSLLFFSLITLSLAMDTSMRSNEEVMNMYEEWLVKHHKVYNGLGEKDRRFEIFKDNLGFIDEHNAQNYTYKVGLNKFADMTNEEYRNMYLGTRSDAKRRVMKTKITTGHRYAFNSGDRLPVHVDWRSKGAVARIKDQGSCGSCWAFSTIATVEAINKIVTGKLVSLSEQELVDCDRAFNEGCNGGLMDYAFEFIVENGGIDTEQDYPYKGFEGRCDPTRKNAKVVSIDGYEDVPAYNENALKKAVSHQPVSVAIEAGGRALQLYQSGVFTGRCGTNLDHGVVVVGYGSENGVDYWLVRNSWGTNWGEEGYFKLERNVKKTNTGKCGIAMQASYPVKYGQNSAEVLVSSA*