AlfalfaGEDB | Msa1297360

M. sativa cultivar zhongmu-4 / Msa1297360

KEGG: -
GO: -
PFAM: PF00010.29

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1297360	XP_003608592.1	88.955	335	30	3	1	335	1	328	0.0	605

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1297360	sp\|Q1PF16\|BH019_ARATH	50.000	180	82	5	155	327	112	290	3.73e-50	172

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1297360	G7JGD6	88.955	335	30	3	1	335	1	328	0.0	605

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
Msa1297360	TF	bHLH

Showing 1 to 1 of 1 entries

Previous1Next

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0710810	Msa1297360	0.812192	4.798277e-51	-8.615850e-47
Msa0881750	Msa1297360	0.807261	5.509484e-50	-8.615850e-47
Msa1133360	Msa1297360	0.964828	8.046508e-124	-8.615850e-47
Msa1297360	Msa1340610	0.852280	5.120003e-61	-8.615850e-47

Showing 1 to 4 of 4 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1297360	MtrunA17_Chr4g0054561	88.955	335	30	3	1	335	1	328	0.0	605
Msa1297360	MtrunA17_Chr4g0054551	86.866	335	37	3	1	335	1	328	0.0	593
Msa1297360	MtrunA17_Chr5g0400671	45.042	353	141	11	1	331	1	322	2.13e-81	250
Msa1297360	MtrunA17_Chr2g0280161	38.310	355	176	12	2	327	5	345	1.06e-57	190
Msa1297360	MtrunA17_Chr4g0049331	46.473	241	117	8	100	335	77	310	1.57e-52	175
Msa1297360	MtrunA17_Chr8g0336681	46.809	188	87	4	155	331	149	334	4.71e-50	170
Msa1297360	MtrunA17_Chr5g0400661	37.143	315	151	12	43	331	40	333	4.84e-48	164
Msa1297360	MtrunA17_Chr2g0333621	47.396	192	94	3	145	331	121	310	6.61e-47	161
Msa1297360	MtrunA17_Chr6g0468491	36.897	290	153	7	42	327	41	304	1.47e-46	160
Msa1297360	MtrunA17_Chr4g0054581	42.920	226	102	7	111	327	162	369	1.86e-45	159

Showing 1 to 10 of 40 entries

Previous1 2 3 4Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1297360	AT2G22760.1	50.000	180	82	5	155	327	112	290	3.80e-51	172
Msa1297360	AT4G37850.2	49.733	187	87	4	154	335	144	328	5.60e-50	169
Msa1297360	AT4G37850.1	49.733	187	87	4	154	335	144	328	5.60e-50	169
Msa1297360	AT2G22760.2	50.000	164	75	4	155	312	112	274	5.09e-46	158
Msa1297360	AT2G22770.1	43.694	222	103	5	131	331	98	318	8.34e-43	150
Msa1297360	AT2G22750.2	41.736	242	120	7	99	328	66	298	9.63e-42	147
Msa1297360	AT2G22750.3	41.736	242	120	7	99	328	94	326	1.27e-41	148
Msa1297360	AT2G22750.5	41.736	242	120	7	99	328	90	322	1.39e-41	147
Msa1297360	AT2G22750.1	41.736	242	119	8	99	328	66	297	2.42e-40	144
Msa1297360	AT2G22750.4	41.736	242	119	8	99	328	94	325	3.31e-40	144

Showing 1 to 10 of 30 entries

Previous1 2 3Next

Find 70 sgRNAs with CRISPR-Local

Find 232 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCGAAGCAAGAGTTTC+TGG	0.260282	8_3:-57578025	Msa1297360:CDS
AACATATGATAATAATGCCA+AGG	0.589046	8_3:-57577517	Msa1297360:three_prime_UTR
AAGAAGCCTAAAACCGAGAT+CGG	0.501691	8_3:-57578601	Msa1297360:CDS
AATCTCCACAACGTGAAAGA+GGG	0.623967	8_3:+57577380	None:intergenic
ACATGATCTTGAGCCTGAAT+AGG	0.366395	8_3:+57578490	None:intergenic
ACCGCCAACTAAAGTACTCA+AGG	0.590049	8_3:-57578689	Msa1297360:CDS
ACTTTGCATGCAGATGGACA+AGG	0.646531	8_3:-57578224	Msa1297360:intron
AGAAGCCTAAAACCGAGATC+GGG	0.567677	8_3:-57578600	Msa1297360:CDS
AGGAAAGAGCAATGAATCTC+TGG	0.478665	8_3:+57578434	None:intergenic
AGGAATAAGTACTCTCTTGT+GGG	0.507070	8_3:+57578815	None:intergenic

Showing 1 to 10 of 70 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AACTATTGGATATATGAGGA+GGG	+	chr8_3:57577380-57577399	None:intergenic	30.0%
AAACTATTGGATATATGAGG+AGG	+	chr8_3:57577381-57577400	None:intergenic	30.0%
TAATGATTATGAGTACCCTA+TGG	-	chr8_3:57577730-57577749	Msa1297360:CDS	30.0%
TGTAAATAGAAACCCTATTC+AGG	-	chr8_3:57578120-57578139	Msa1297360:CDS	30.0%
TAATTGAGCTGAATTAGTGA+CGG	-	chr8_3:57578800-57578819	Msa1297360:CDS	30.0%
TACCTCAATAATCCAAATGA+TGG	+	chr8_3:57579066-57579085	None:intergenic	30.0%
CAAAAAACAAGAAAACACCT+TGG	+	chr8_3:57579126-57579145	None:intergenic	30.0%
AACTATTGGATATATGAGGA+GGG	+	chr8_3:57577380-57577399	None:intergenic	30.0%
AAACTATTGGATATATGAGG+AGG	+	chr8_3:57577381-57577400	None:intergenic	30.0%
TAATGATTATGAGTACCCTA+TGG	-	chr8_3:57577730-57577749	Msa1297360:CDS	30.0%

Showing 1 to 10 of 232 entries

Previous1 2 3 4 5…24Next

Chromosome	Type	Strat	End	Strand	Name
chr8_3	gene	57577341	57579304	57577341	ID=Msa1297360;Name=Msa1297360
chr8_3	mRNA	57577341	57579304	57577341	ID=Msa1297360-mRNA-1;Parent=Msa1297360;Name=Msa1297360-mRNA-1;_AED=0.02;_eAED=0.02;_QI=64\|1\|1\|1\|0.75\|0.6\|5\|351\|335
chr8_3	exon	57577341	57577766	57577341	ID=Msa1297360-mRNA-1:exon:16506;Parent=Msa1297360-mRNA-1
chr8_3	exon	57577871	57578233	57577871	ID=Msa1297360-mRNA-1:exon:16505;Parent=Msa1297360-mRNA-1
chr8_3	exon	57578411	57578941	57578411	ID=Msa1297360-mRNA-1:exon:16504;Parent=Msa1297360-mRNA-1
chr8_3	exon	57579067	57579137	57579067	ID=Msa1297360-mRNA-1:exon:16503;Parent=Msa1297360-mRNA-1
chr8_3	exon	57579273	57579304	57579273	ID=Msa1297360-mRNA-1:exon:16502;Parent=Msa1297360-mRNA-1
chr8_3	five_prime_UTR	57579273	57579304	57579273	ID=Msa1297360-mRNA-1:five_prime_utr;Parent=Msa1297360-mRNA-1
chr8_3	five_prime_UTR	57579106	57579137	57579106	ID=Msa1297360-mRNA-1:five_prime_utr;Parent=Msa1297360-mRNA-1
chr8_3	CDS	57579067	57579105	57579067	ID=Msa1297360-mRNA-1:cds;Parent=Msa1297360-mRNA-1
chr8_3	CDS	57578411	57578941	57578411	ID=Msa1297360-mRNA-1:cds;Parent=Msa1297360-mRNA-1
chr8_3	CDS	57577871	57578233	57577871	ID=Msa1297360-mRNA-1:cds;Parent=Msa1297360-mRNA-1
chr8_3	CDS	57577692	57577766	57577692	ID=Msa1297360-mRNA-1:cds;Parent=Msa1297360-mRNA-1
chr8_3	three_prime_UTR	57577341	57577691	57577341	ID=Msa1297360-mRNA-1:three_prime_utr;Parent=Msa1297360-mRNA-1

Gene Sequence

>Msa1297360

ATGATTCAAATTTCGTCTACCAAGTACATGCCTGAATTCGGATTAATGGAGGACACTACTTTGTTTAATGATTATGAGTACCCTATGGATTCATCTGCATTTCAGTTTGATGATATGGCATACTTCAAGTCTTTCTCAGCATCCCCACAAGAGAGTACTTATTCCTCTCATACCAACAACATCAACAACAAGCGAATCCATTCTGAAAGCCCACAGAACAGTTCTTTCCCCATTGAAAGTAGTCCAGATCAATCTGTTGTCTCAGCAACACCGCCAACTAAAGTACTCAAGGCTTCTCCCAAAATCATTTCATTTGATAATTCTTCTCAACAATTTTACAACATGGATGCAAAGGTTAAGAAGCCTAAAACCGAGATCGGGTACGGAGAAAACTTGAATTTTGGAAGTGTGATATCTCAAGGTGATTATTATAAACGAGAGAACAAGGTTGCTGTTGTAAATAGAAACCCTATTCAGGCTCAAGATCATGTTATGGCCGAAAGAAGACGAAGGGAAAAGCTTAGCCAGAGATTCATTGCTCTTTCCTCCATTCTTCCTGGACTGAAAAAGATGGACAAGGCAACTATTTTGGAAGATGCTATTAAACATATGAAGCAACTAAAGGAACGAGTGAAGACATTAGAGGAACAAGTAGCCGATAAAAAGGTCGAATCAGCAGTCTTTGTGAAGAGATCTATTCTCTTCGACGATGATGGCAGTTCTTCTTGCGACGACAACTCAGACAAATCACTCCCAAAAATCGAAGCAAGAGTTTCTGGAAAAGACATGCTCATCAGAATCCACGGTGATAAACATTGCGGCCGATCTGCGGCCGCAATACTCAACTTATTGGAAAAGCATCATCTCACTGTTCAAAGTAGTTCTATTTTACCATTTGGAAATAACTATCTTGATATAACCATTGTTGCTCAGATGAATAAGGAATATTGCTTAACAATAAAGGATCTCGTAAGAAGCATAAGTCAGGTTTTGAGGCAGCATATTTGA

Protein sequence

>Msa1297360

MIQISSTKYMPEFGLMEDTTLFNDYEYPMDSSAFQFDDMAYFKSFSASPQESTYSSHTNNINNKRIHSESPQNSSFPIESSPDQSVVSATPPTKVLKASPKIISFDNSSQQFYNMDAKVKKPKTEIGYGENLNFGSVISQGDYYKRENKVAVVNRNPIQAQDHVMAERRRREKLSQRFIALSSILPGLKKMDKATILEDAIKHMKQLKERVKTLEEQVADKKVESAVFVKRSILFDDDGSSSCDDNSDKSLPKIEARVSGKDMLIRIHGDKHCGRSAAAILNLLEKHHLTVQSSSILPFGNNYLDITIVAQMNKEYCLTIKDLVRSISQVLRQHI*