Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340610 | XP_003608592.1 | 89.222 | 334 | 30 | 2 | 1 | 334 | 1 | 328 | 0.0 | 607 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340610 | sp|Q1PF16|BH019_ARATH | 36.585 | 328 | 155 | 11 | 9 | 326 | 6 | 290 | 1.67e-51 | 175 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340610 | G7JGD6 | 89.222 | 334 | 30 | 2 | 1 | 334 | 1 | 328 | 0.0 | 607 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1340610 | TF | bHLH |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0051050 | Msa1340610 | 0.801279 | 9.705149e-49 | -8.615850e-47 |
| Msa0710810 | Msa1340610 | 0.815680 | 8.166232e-52 | -8.615850e-47 |
| Msa0827820 | Msa1340610 | 0.818781 | 1.638857e-52 | -8.615850e-47 |
| Msa0184410 | Msa1340610 | 0.802245 | 6.147806e-49 | -8.615850e-47 |
| Msa1297360 | Msa1340610 | 0.852280 | 5.120003e-61 | -8.615850e-47 |
| Msa0290680 | Msa1340610 | 0.809605 | 1.742408e-50 | -8.615850e-47 |
| Msa1133360 | Msa1340610 | 0.826915 | 2.086814e-54 | -8.615850e-47 |
| Msa0881750 | Msa1340610 | 0.813796 | 2.135226e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340610 | MtrunA17_Chr4g0054561 | 89.222 | 334 | 30 | 2 | 1 | 334 | 1 | 328 | 0.0 | 607 |
| Msa1340610 | MtrunA17_Chr4g0054551 | 87.126 | 334 | 37 | 2 | 1 | 334 | 1 | 328 | 0.0 | 595 |
| Msa1340610 | MtrunA17_Chr5g0400671 | 45.455 | 352 | 140 | 13 | 1 | 330 | 1 | 322 | 2.04e-78 | 243 |
| Msa1340610 | MtrunA17_Chr2g0280161 | 38.244 | 353 | 178 | 14 | 2 | 326 | 5 | 345 | 4.56e-54 | 181 |
| Msa1340610 | MtrunA17_Chr4g0049331 | 42.966 | 263 | 140 | 6 | 76 | 334 | 54 | 310 | 1.06e-52 | 176 |
| Msa1340610 | MtrunA17_Chr8g0336681 | 46.809 | 188 | 87 | 4 | 154 | 330 | 149 | 334 | 3.87e-50 | 170 |
| Msa1340610 | MtrunA17_Chr5g0400661 | 40.784 | 255 | 119 | 9 | 101 | 330 | 86 | 333 | 5.40e-48 | 164 |
| Msa1340610 | MtrunA17_Chr2g0333621 | 47.396 | 192 | 94 | 3 | 144 | 330 | 121 | 310 | 4.16e-47 | 161 |
| Msa1340610 | MtrunA17_Chr6g0468491 | 47.093 | 172 | 87 | 3 | 158 | 326 | 134 | 304 | 1.56e-46 | 160 |
| Msa1340610 | MtrunA17_Chr4g0054581 | 44.550 | 211 | 93 | 6 | 125 | 326 | 174 | 369 | 3.91e-45 | 158 |
| Msa1340610 | MtrunA17_Chr4g0033391 | 43.062 | 209 | 100 | 5 | 129 | 334 | 127 | 319 | 1.97e-43 | 152 |
| Msa1340610 | MtrunA17_Chr4g0002781 | 41.036 | 251 | 114 | 9 | 98 | 330 | 114 | 348 | 3.30e-43 | 152 |
| Msa1340610 | MtrunA17_Chr4g0002801 | 40.984 | 244 | 120 | 7 | 98 | 330 | 99 | 329 | 6.51e-43 | 151 |
| Msa1340610 | MtrunA17_Chr2g0307131 | 47.368 | 171 | 86 | 2 | 159 | 326 | 177 | 346 | 6.58e-43 | 151 |
| Msa1340610 | MtrunA17_Chr4g0033291 | 42.995 | 207 | 109 | 4 | 129 | 330 | 121 | 323 | 1.34e-42 | 150 |
| Msa1340610 | MtrunA17_Chr2g0307141 | 46.199 | 171 | 88 | 2 | 159 | 326 | 181 | 350 | 1.47e-42 | 150 |
| Msa1340610 | MtrunA17_Chr5g0400621 | 50.000 | 170 | 81 | 2 | 160 | 326 | 156 | 324 | 2.55e-42 | 149 |
| Msa1340610 | MtrunA17_Chr7g0225901 | 47.134 | 157 | 79 | 3 | 158 | 311 | 85 | 240 | 1.22e-41 | 145 |
| Msa1340610 | MtrunA17_Chr2g0333641 | 43.085 | 188 | 105 | 2 | 144 | 330 | 120 | 306 | 4.95e-39 | 140 |
| Msa1340610 | MtrunA17_Chr4g0054621 | 41.989 | 181 | 100 | 2 | 146 | 326 | 157 | 332 | 1.21e-38 | 140 |
| Msa1340610 | MtrunA17_Chr5g0400641 | 44.099 | 161 | 78 | 4 | 164 | 317 | 1 | 156 | 9.26e-38 | 132 |
| Msa1340610 | MtrunA17_Chr4g0054571 | 47.059 | 187 | 78 | 6 | 161 | 332 | 150 | 330 | 1.49e-37 | 137 |
| Msa1340610 | MtrunA17_Chr4g0033281 | 41.089 | 202 | 111 | 4 | 129 | 326 | 119 | 316 | 2.68e-36 | 133 |
| Msa1340610 | MtrunA17_Chr7g0249811 | 44.134 | 179 | 93 | 2 | 152 | 330 | 156 | 327 | 1.13e-35 | 132 |
| Msa1340610 | MtrunA17_Chr2g0333611 | 39.674 | 184 | 97 | 6 | 154 | 330 | 38 | 214 | 5.58e-35 | 127 |
| Msa1340610 | MtrunA17_Chr2g0333541 | 41.622 | 185 | 94 | 6 | 154 | 329 | 87 | 266 | 9.62e-31 | 117 |
| Msa1340610 | MtrunA17_Chr6g0468461 | 40.645 | 155 | 80 | 2 | 157 | 311 | 169 | 311 | 5.79e-28 | 111 |
| Msa1340610 | MtrunA17_Chr7g0233441 | 36.646 | 161 | 89 | 5 | 166 | 326 | 44 | 191 | 2.43e-20 | 87.4 |
| Msa1340610 | MtrunA17_Chr4g0002831 | 36.250 | 160 | 92 | 5 | 172 | 330 | 53 | 203 | 2.43e-20 | 87.8 |
| Msa1340610 | MtrunA17_Chr4g0002851 | 34.375 | 160 | 78 | 4 | 172 | 326 | 54 | 191 | 3.30e-19 | 84.3 |
| Msa1340610 | MtrunA17_Chr8g0346161 | 29.557 | 203 | 119 | 8 | 142 | 328 | 270 | 464 | 1.92e-16 | 80.1 |
| Msa1340610 | MtrunA17_Chr8g0346151 | 28.144 | 167 | 102 | 5 | 142 | 295 | 258 | 419 | 5.88e-14 | 72.4 |
| Msa1340610 | MtrunA17_Chr1g0185621 | 50.000 | 64 | 30 | 1 | 161 | 224 | 475 | 536 | 6.56e-14 | 72.8 |
| Msa1340610 | MtrunA17_Chr7g0260841 | 46.250 | 80 | 38 | 2 | 144 | 221 | 341 | 417 | 1.12e-13 | 71.6 |
| Msa1340610 | MtrunA17_Chr8g0366751 | 31.928 | 166 | 95 | 5 | 144 | 295 | 448 | 609 | 7.77e-13 | 69.3 |
| Msa1340610 | MtrunA17_Chr5g0411341 | 30.909 | 165 | 93 | 5 | 144 | 290 | 479 | 640 | 9.51e-13 | 68.9 |
| Msa1340610 | MtrunA17_Chr7g0275821 | 50.000 | 56 | 28 | 0 | 161 | 216 | 252 | 307 | 2.86e-12 | 67.4 |
| Msa1340610 | MtrunA17_Chr8g0386921 | 41.791 | 67 | 39 | 0 | 158 | 224 | 403 | 469 | 9.65e-12 | 65.9 |
| Msa1340610 | MtrunA17_Chr3g0131691 | 32.824 | 131 | 74 | 4 | 102 | 232 | 253 | 369 | 2.57e-11 | 64.3 |
| Msa1340610 | MtrunA17_Chr8g0365711 | 27.879 | 165 | 106 | 4 | 154 | 308 | 237 | 398 | 8.24e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1340610 | AT2G22760.1 | 36.585 | 328 | 155 | 11 | 9 | 326 | 6 | 290 | 1.70e-52 | 175 |
| Msa1340610 | AT4G37850.2 | 46.798 | 203 | 99 | 5 | 139 | 334 | 128 | 328 | 5.38e-50 | 169 |
| Msa1340610 | AT4G37850.1 | 46.798 | 203 | 99 | 5 | 139 | 334 | 128 | 328 | 5.38e-50 | 169 |
| Msa1340610 | AT2G22760.2 | 35.897 | 312 | 148 | 10 | 9 | 311 | 6 | 274 | 4.92e-47 | 160 |
| Msa1340610 | AT2G22770.1 | 43.694 | 222 | 103 | 6 | 130 | 330 | 98 | 318 | 2.57e-42 | 149 |
| Msa1340610 | AT2G22750.2 | 40.909 | 242 | 122 | 6 | 98 | 327 | 66 | 298 | 2.87e-41 | 146 |
| Msa1340610 | AT2G22750.3 | 40.909 | 242 | 122 | 6 | 98 | 327 | 94 | 326 | 4.43e-41 | 146 |
| Msa1340610 | AT2G22750.5 | 40.909 | 242 | 122 | 6 | 98 | 327 | 90 | 322 | 4.64e-41 | 146 |
| Msa1340610 | AT2G22750.1 | 40.909 | 242 | 121 | 7 | 98 | 327 | 66 | 297 | 6.91e-40 | 142 |
| Msa1340610 | AT2G22750.4 | 40.909 | 242 | 121 | 7 | 98 | 327 | 94 | 325 | 1.10e-39 | 142 |
| Msa1340610 | AT1G32640.1 | 35.897 | 156 | 87 | 6 | 144 | 290 | 438 | 589 | 2.17e-16 | 80.5 |
| Msa1340610 | AT2G46510.1 | 47.561 | 82 | 40 | 1 | 135 | 216 | 372 | 450 | 2.39e-15 | 77.4 |
| Msa1340610 | AT5G46760.1 | 31.481 | 162 | 94 | 5 | 144 | 295 | 401 | 555 | 1.47e-12 | 68.9 |
| Msa1340610 | AT1G01260.1 | 28.947 | 190 | 118 | 5 | 27 | 216 | 316 | 488 | 1.79e-12 | 68.6 |
| Msa1340610 | AT1G01260.2 | 28.947 | 190 | 118 | 5 | 27 | 216 | 316 | 488 | 1.79e-12 | 68.6 |
| Msa1340610 | AT1G01260.3 | 28.947 | 190 | 118 | 5 | 27 | 216 | 316 | 488 | 1.79e-12 | 68.6 |
| Msa1340610 | AT4G17880.1 | 31.447 | 159 | 94 | 5 | 144 | 295 | 402 | 552 | 2.53e-12 | 68.2 |
| Msa1340610 | AT4G09820.1 | 27.933 | 179 | 105 | 5 | 154 | 330 | 356 | 512 | 6.61e-12 | 66.6 |
| Msa1340610 | AT4G16430.1 | 40.506 | 79 | 43 | 1 | 142 | 216 | 297 | 375 | 1.18e-11 | 65.9 |
| Msa1340610 | AT1G63650.3 | 44.068 | 59 | 33 | 0 | 156 | 214 | 400 | 458 | 1.46e-11 | 65.9 |
| Msa1340610 | AT1G63650.1 | 44.068 | 59 | 33 | 0 | 156 | 214 | 400 | 458 | 1.46e-11 | 65.9 |
| Msa1340610 | AT1G63650.2 | 44.068 | 59 | 33 | 0 | 156 | 214 | 400 | 458 | 1.46e-11 | 65.9 |
| Msa1340610 | AT1G12860.1 | 29.518 | 166 | 101 | 6 | 162 | 315 | 268 | 429 | 2.33e-11 | 65.1 |
| Msa1340610 | AT4G29930.4 | 39.394 | 66 | 40 | 0 | 162 | 227 | 55 | 120 | 5.90e-11 | 61.2 |
| Msa1340610 | AT4G29930.5 | 39.394 | 66 | 40 | 0 | 162 | 227 | 55 | 120 | 6.41e-11 | 62.0 |
| Msa1340610 | AT4G29930.2 | 39.394 | 66 | 40 | 0 | 162 | 227 | 55 | 120 | 6.80e-11 | 62.0 |
| Msa1340610 | AT4G29930.3 | 39.394 | 66 | 40 | 0 | 162 | 227 | 55 | 120 | 7.54e-11 | 62.4 |
| Msa1340610 | AT4G29930.7 | 39.394 | 66 | 40 | 0 | 162 | 227 | 55 | 120 | 7.54e-11 | 62.4 |
| Msa1340610 | AT4G29930.6 | 39.394 | 66 | 40 | 0 | 162 | 227 | 55 | 120 | 7.62e-11 | 61.6 |
| Msa1340610 | AT4G29930.1 | 39.394 | 66 | 40 | 0 | 162 | 227 | 55 | 120 | 8.81e-11 | 62.0 |
| Msa1340610 | AT5G46830.1 | 32.143 | 140 | 85 | 5 | 161 | 295 | 343 | 477 | 9.36e-11 | 63.2 |
Find 69 sgRNAs with CRISPR-Local
Find 228 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTATCAAATGAAATGATTT+TGG | 0.105789 | tig0004284:+31904 | Msa1340610:intergenic |
| CGAAATTTGAATCATCTTTC+AGG | 0.176456 | tig0004284:+32332 | Msa1340610:intergenic |
| TGCATTTCAGTTTGATGATA+TGG | 0.178721 | tig0004284:-32104 | Msa1340610:CDS |
| GATGGACAAGGCAACTATTT+TGG | 0.186609 | tig0004284:-31456 | Msa1340610:CDS |
| TACGGAGAAAACTTGAATTT+TGG | 0.226888 | tig0004284:-31821 | Msa1340610:CDS |
| TTTGAATTAACAGGGATTAA+TGG | 0.241351 | tig0004284:-32173 | Msa1340610:intron |
| GCTCTTTCCTCCATTCTTCC+TGG | 0.259749 | tig0004284:-31665 | Msa1340610:CDS |
| AAAATCGAAGCAAGAGTTTC+TGG | 0.260282 | tig0004284:-31269 | Msa1340610:CDS |
| CATTCTTCCTGGACTGAAAA+AGG | 0.273836 | tig0004284:-31654 | Msa1340610:intron |
| TGCCTTGAAACTGGTTGTTT+TGG | 0.285314 | tig0004284:+30912 | Msa1340610:intergenic |
| GGCCGCAATACTCAACTTAT+TGG | 0.296853 | tig0004284:-31195 | Msa1340610:CDS |
| GGAATATTGCTTAACAATAA+AGG | 0.354244 | tig0004284:-30980 | Msa1340610:CDS |
| TGTAAATAGAAACCCTATTC+AGG | 0.354615 | tig0004284:-31747 | Msa1340610:CDS |
| TGTTGTGTACTTACGAATTC+AGG | 0.356450 | tig0004284:+32294 | Msa1340610:intergenic |
| ACATGATCTTGAGCCTGAAT+AGG | 0.366395 | tig0004284:+31734 | Msa1340610:intergenic |
| CATGATCTTGAGCCTGAATA+GGG | 0.371001 | tig0004284:+31735 | Msa1340610:intergenic |
| TCAGGTTTGAATTCCTTGTA+TGG | 0.376886 | tig0004284:+32350 | Msa1340610:intergenic |
| TCGCTTGTTGTTGATGTTGT+TGG | 0.394714 | tig0004284:+32027 | Msa1340610:intergenic |
| ATCCAAAACAACCAGTTTCA+AGG | 0.398170 | tig0004284:-30914 | Msa1340610:three_prime_UTR |
| GGAACAAGTAGCCGATAAAA+AGG | 0.423518 | tig0004284:-31381 | Msa1340610:CDS |
| TGATATAACCATTGTTGCTC+AGG | 0.429067 | tig0004284:-31114 | Msa1340610:intron |
| GTCCATCATTTGGATTATTG+AGG | 0.431350 | tig0004284:-30806 | Msa1340610:three_prime_UTR |
| ATATGTTGATGCCTTGAAAC+TGG | 0.446911 | tig0004284:+30903 | Msa1340610:intergenic |
| TACGAATTCAGGCATGTACT+TGG | 0.466492 | tig0004284:+32305 | Msa1340610:intergenic |
| TCAAGATAGTTATTTCCAAA+TGG | 0.476177 | tig0004284:+31134 | Msa1340610:intergenic |
| TACCTCAATAATCCAAATGA+TGG | 0.476825 | tig0004284:+30804 | Msa1340610:intergenic |
| AGGAAAGAGCAATGAATCTC+TGG | 0.478665 | tig0004284:+31678 | Msa1340610:intergenic |
| TGTTCTGTGTGCTTTCAGAA+TGG | 0.481082 | tig0004284:+32002 | Msa1340610:intergenic |
| TCACTATGATATTAAAACTA+AGG | 0.485420 | tig0004284:+30854 | Msa1340610:intergenic |
| TCCTTGAGTACTTTAGTTGG+CGG | 0.485847 | tig0004284:+31932 | Msa1340610:intergenic |
| AAGAAGCTTAAAACCGAGAT+CGG | 0.489570 | tig0004284:-31845 | Msa1340610:CDS |
| GAATCCTTGAGTACTTTAGT+TGG | 0.495266 | tig0004284:+31929 | Msa1340610:intergenic |
| TAATGATTATGAGTACCCTA+TGG | 0.498020 | tig0004284:-32134 | Msa1340610:CDS |
| CAGGTTTGAATTCCTTGTAT+GGG | 0.501779 | tig0004284:+32351 | Msa1340610:intergenic |
| AGGAATAAGTACTCTCTTGT+GGG | 0.507070 | tig0004284:+32056 | Msa1340610:intergenic |
| GCTGAGACAACAGATTGATC+TGG | 0.515599 | tig0004284:+31959 | Msa1340610:intergenic |
| CTTAAAACCGAGATCGGGTA+CGG | 0.516391 | tig0004284:-31839 | Msa1340610:CDS |
| GGAACGAGTGAAGACATTAG+AGG | 0.517587 | tig0004284:-31402 | Msa1340610:CDS |
| TCAGGCTCAAGATCATGTTA+TGG | 0.518678 | tig0004284:-31729 | Msa1340610:CDS |
| CAATCTCCACAACGTGAAAG+AGG | 0.521353 | tig0004284:+30623 | Msa1340610:intergenic |
| TCTATTCTCTTCGACGATGA+TGG | 0.521622 | tig0004284:-31332 | Msa1340610:CDS |
| TTCGTCCCTCTTTCACGTTG+TGG | 0.523361 | tig0004284:-30629 | Msa1340610:three_prime_UTR |
| TGAAATGCAGATGAATCCAT+AGG | 0.526233 | tig0004284:+32118 | Msa1340610:intergenic |
| GATTGATCTGGACTTTCAGT+GGG | 0.534032 | tig0004284:+31971 | Msa1340610:intergenic |
| TCTCGTAAGAAGCATAAGTC+AGG | 0.535454 | tig0004284:-30956 | Msa1340610:CDS |
| AGATTGATCTGGACTTTCAG+TGG | 0.535461 | tig0004284:+31970 | Msa1340610:intergenic |
| GTTGATGTTGTTGGTATGAG+AGG | 0.543066 | tig0004284:+32036 | Msa1340610:intergenic |
| GAGGAATAAGTACTCTCTTG+TGG | 0.546666 | tig0004284:+32055 | Msa1340610:intergenic |
| AGAAGCTTAAAACCGAGATC+GGG | 0.550283 | tig0004284:-31844 | Msa1340610:CDS |
| TTTGGAAGTGTGATATCTCA+AGG | 0.551675 | tig0004284:-31803 | Msa1340610:CDS |
| AAAACATATGAAGCAACTAA+AGG | 0.561488 | tig0004284:-31423 | Msa1340610:CDS |
| TTCCAATAAGTTGAGTATTG+CGG | 0.565334 | tig0004284:+31193 | Msa1340610:intergenic |
| TGAGTATTGCGGCCGCAGAT+CGG | 0.574788 | tig0004284:+31204 | Msa1340610:intergenic |
| AACATATGATAATAATGCCA+AGG | 0.589046 | tig0004284:-30761 | Msa1340610:three_prime_UTR |
| GAAATGCAGATGAATCCATA+GGG | 0.600361 | tig0004284:+32119 | Msa1340610:intergenic |
| ACCGCCAACTAAAGTACTCA+AGG | 0.600887 | tig0004284:-31933 | Msa1340610:CDS |
| GAATTAACAGGGATTAATGG+AGG | 0.608513 | tig0004284:-32170 | Msa1340610:intron |
| GACATGCTCATCAGAATCCA+CGG | 0.608624 | tig0004284:-31242 | Msa1340610:CDS |
| TTATTATAAACGAGAGAACA+AGG | 0.617033 | tig0004284:-31777 | Msa1340610:CDS |
| GGCCGCAATGTTTATCACCG+TGG | 0.620508 | tig0004284:+31225 | Msa1340610:intergenic |
| AATCTCCACAACGTGAAAGA+GGG | 0.621485 | tig0004284:+30624 | Msa1340610:intergenic |
| TAAACATTGCGGCCGATCTG+CGG | 0.633204 | tig0004284:-31216 | Msa1340610:CDS |
| GGAATAAGTACTCTCTTGTG+GGG | 0.633544 | tig0004284:+32057 | Msa1340610:intergenic |
| TTTCAGTCCAGGAAGAATGG+AGG | 0.639981 | tig0004284:+31658 | Msa1340610:intergenic |
| ACTTTGCATGCAGATGGACA+AGG | 0.646531 | tig0004284:-31468 | Msa1340610:intron |
| TATGGCCGAAAGAAGACGAA+GGG | 0.657033 | tig0004284:-31711 | Msa1340610:CDS |
| TTATGGCCGAAAGAAGACGA+AGG | 0.705183 | tig0004284:-31712 | Msa1340610:CDS |
| ATCCACGGTGATAAACATTG+CGG | 0.719186 | tig0004284:-31227 | Msa1340610:CDS |
| ATTGATCTGGACTTTCAGTG+GGG | 0.733516 | tig0004284:+31972 | Msa1340600:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTAATCTTTTTTCCAATTTT+TGG | - | tig0004284:30663-30682 | Msa1340610:three_prime_UTR | 15.0% |
| !!! | TAATTTTGATTTCCAAAAAT+TGG | + | tig0004284:30678-30697 | Msa1340610:intergenic | 15.0% |
| !! | ATTAAGAAGAAAAAACAATT+AGG | + | tig0004284:30720-30739 | Msa1340610:intergenic | 15.0% |
| !!! | TTATCAAATGAAATGATTTT+GGG | + | tig0004284:31201-31220 | Msa1340610:intergenic | 15.0% |
| !!! | ATTATCAAATGAAATGATTT+TGG | + | tig0004284:31202-31221 | Msa1340610:intergenic | 15.0% |
| !! | AGAAAATTTACATACTAATT+AGG | - | tig0004284:31551-31570 | Msa1340610:intron | 15.0% |
| !!! | CTTTTTCCATTTTTTTTTTT+TGG | - | tig0004284:32275-32294 | Msa1340610:intron | 15.0% |
| !!! | TTAATCTTTTTTCCAATTTT+TGG | - | tig0004284:30663-30682 | Msa1340610:three_prime_UTR | 15.0% |
| !!! | TAATTTTGATTTCCAAAAAT+TGG | + | tig0004284:30678-30697 | Msa1340610:intergenic | 15.0% |
| !! | ATTAAGAAGAAAAAACAATT+AGG | + | tig0004284:30720-30739 | Msa1340610:intergenic | 15.0% |
| !!! | TTATCAAATGAAATGATTTT+GGG | + | tig0004284:31201-31220 | Msa1340610:intergenic | 15.0% |
| !!! | ATTATCAAATGAAATGATTT+TGG | + | tig0004284:31202-31221 | Msa1340610:intergenic | 15.0% |
| !! | AGAAAATTTACATACTAATT+AGG | - | tig0004284:31551-31570 | Msa1340610:intron | 15.0% |
| !!! | CTTTTTCCATTTTTTTTTTT+TGG | - | tig0004284:32275-32294 | Msa1340610:intron | 15.0% |
| !! | GAAATCAAAATTAAAGAGTT+TGG | - | tig0004284:30685-30704 | Msa1340610:three_prime_UTR | 20.0% |
| !!! | ATTAAAGAGTTTGGTTTAAT+TGG | - | tig0004284:30694-30713 | Msa1340610:three_prime_UTR | 20.0% |
| !! | TAATTCAAAGAAAAAGAGTA+AGG | + | tig0004284:30919-30938 | Msa1340610:intergenic | 20.0% |
| !!! | TCTTTTTCTTTGAATTAACA+GGG | - | tig0004284:30922-30941 | Msa1340610:exon | 20.0% |
| !! | AAATATTATGCATTTGAATG+TGG | - | tig0004284:31494-31513 | Msa1340610:intron | 20.0% |
| !! | AATATTATGCATTTGAATGT+GGG | - | tig0004284:31495-31514 | Msa1340610:intron | 20.0% |
| !! | TCACTATGATATTAAAACTA+AGG | + | tig0004284:32252-32271 | Msa1340610:intergenic | 20.0% |
| !! | GAAATCAAAATTAAAGAGTT+TGG | - | tig0004284:30685-30704 | Msa1340610:three_prime_UTR | 20.0% |
| !!! | ATTAAAGAGTTTGGTTTAAT+TGG | - | tig0004284:30694-30713 | Msa1340610:three_prime_UTR | 20.0% |
| !! | TAATTCAAAGAAAAAGAGTA+AGG | + | tig0004284:30919-30938 | Msa1340610:intergenic | 20.0% |
| !!! | TCTTTTTCTTTGAATTAACA+GGG | - | tig0004284:30922-30941 | Msa1340610:exon | 20.0% |
| !! | AAATATTATGCATTTGAATG+TGG | - | tig0004284:31494-31513 | Msa1340610:intron | 20.0% |
| !! | AATATTATGCATTTGAATGT+GGG | - | tig0004284:31495-31514 | Msa1340610:intron | 20.0% |
| !! | TCACTATGATATTAAAACTA+AGG | + | tig0004284:32252-32271 | Msa1340610:intergenic | 20.0% |
| !!! | AATCTACTTTTCTTCAACTA+AGG | - | tig0004284:30593-30612 | Msa1340610:three_prime_UTR | 25.0% |
| ! | TCTAAACTATTGGATATATG+AGG | + | tig0004284:30626-30645 | Msa1340610:intergenic | 25.0% |
| ! | AAATGCAAAGTCTAAACTAT+TGG | + | tig0004284:30636-30655 | Msa1340610:intergenic | 25.0% |
| !! | GTTTAGACTTTGCATTTTAT+AGG | - | tig0004284:30639-30658 | Msa1340610:three_prime_UTR | 25.0% |
| !! | CTCTTTTTCTTTGAATTAAC+AGG | - | tig0004284:30921-30940 | Msa1340610:exon | 25.0% |
| ! | TTTGAATTAACAGGGATTAA+TGG | - | tig0004284:30930-30949 | Msa1340610:exon | 25.0% |
| !! | TTCTCAACAATTTTACAACA+TGG | - | tig0004284:31224-31243 | Msa1340610:CDS | 25.0% |
| ! | TTATTATAAACGAGAGAACA+AGG | - | tig0004284:31326-31345 | Msa1340610:CDS | 25.0% |
| ! | TGGTTAATATTACTTGATAG+AGG | + | tig0004284:31609-31628 | Msa1340610:intergenic | 25.0% |
| ! | AAAACATATGAAGCAACTAA+AGG | - | tig0004284:31680-31699 | Msa1340610:CDS | 25.0% |
| !!! | AGTAGTTCTATTTTACCATT+TGG | - | tig0004284:31954-31973 | Msa1340610:CDS | 25.0% |
| !! | TCAAGATAGTTATTTCCAAA+TGG | + | tig0004284:31972-31991 | Msa1340610:intergenic | 25.0% |
| !!! | TTTTTTCTTGCAGATGAATA+AGG | - | tig0004284:32102-32121 | Msa1340610:CDS | 25.0% |
| ! | GGAATATTGCTTAACAATAA+AGG | - | tig0004284:32123-32142 | Msa1340610:CDS | 25.0% |
| ! | GATGGACCAAAAAAAAAAAA+TGG | + | tig0004284:32284-32303 | Msa1340610:intergenic | 25.0% |
| !!! | TTTTTTTTTGGTCCATCATT+TGG | - | tig0004284:32287-32306 | Msa1340610:intron | 25.0% |
| ! | AACATATGATAATAATGCCA+AGG | - | tig0004284:32342-32361 | Msa1340610:exon | 25.0% |
| !!! | TTTTCTTGTTTTTTGCACAA+TGG | - | tig0004284:32367-32386 | Msa1340610:intron | 25.0% |
| !!! | AGGGATTTTTTTTAGACAAT+TGG | - | tig0004284:32432-32451 | Msa1340610:intron | 25.0% |
| !!! | AATCTACTTTTCTTCAACTA+AGG | - | tig0004284:30593-30612 | Msa1340610:three_prime_UTR | 25.0% |
| ! | TCTAAACTATTGGATATATG+AGG | + | tig0004284:30626-30645 | Msa1340610:intergenic | 25.0% |
| ! | AAATGCAAAGTCTAAACTAT+TGG | + | tig0004284:30636-30655 | Msa1340610:intergenic | 25.0% |
| !! | GTTTAGACTTTGCATTTTAT+AGG | - | tig0004284:30639-30658 | Msa1340610:three_prime_UTR | 25.0% |
| !! | CTCTTTTTCTTTGAATTAAC+AGG | - | tig0004284:30921-30940 | Msa1340610:exon | 25.0% |
| ! | TTTGAATTAACAGGGATTAA+TGG | - | tig0004284:30930-30949 | Msa1340610:exon | 25.0% |
| !! | TTCTCAACAATTTTACAACA+TGG | - | tig0004284:31224-31243 | Msa1340610:CDS | 25.0% |
| ! | TTATTATAAACGAGAGAACA+AGG | - | tig0004284:31326-31345 | Msa1340610:CDS | 25.0% |
| ! | TGGTTAATATTACTTGATAG+AGG | + | tig0004284:31609-31628 | Msa1340610:intergenic | 25.0% |
| ! | AAAACATATGAAGCAACTAA+AGG | - | tig0004284:31680-31699 | Msa1340610:CDS | 25.0% |
| !!! | AGTAGTTCTATTTTACCATT+TGG | - | tig0004284:31954-31973 | Msa1340610:CDS | 25.0% |
| !! | TCAAGATAGTTATTTCCAAA+TGG | + | tig0004284:31972-31991 | Msa1340610:intergenic | 25.0% |
| !!! | TTTTTTCTTGCAGATGAATA+AGG | - | tig0004284:32102-32121 | Msa1340610:CDS | 25.0% |
| ! | GGAATATTGCTTAACAATAA+AGG | - | tig0004284:32123-32142 | Msa1340610:CDS | 25.0% |
| ! | GATGGACCAAAAAAAAAAAA+TGG | + | tig0004284:32284-32303 | Msa1340610:intergenic | 25.0% |
| !!! | TTTTTTTTTGGTCCATCATT+TGG | - | tig0004284:32287-32306 | Msa1340610:intron | 25.0% |
| ! | AACATATGATAATAATGCCA+AGG | - | tig0004284:32342-32361 | Msa1340610:exon | 25.0% |
| !!! | TTTTCTTGTTTTTTGCACAA+TGG | - | tig0004284:32367-32386 | Msa1340610:intron | 25.0% |
| !!! | AGGGATTTTTTTTAGACAAT+TGG | - | tig0004284:32432-32451 | Msa1340610:intron | 25.0% |
| AACTATTGGATATATGAGGA+GGG | + | tig0004284:30622-30641 | Msa1340610:intergenic | 30.0% | |
| AAACTATTGGATATATGAGG+AGG | + | tig0004284:30623-30642 | Msa1340610:intergenic | 30.0% | |
| ! | TTTTCAGTTTTTCCCATACA+AGG | - | tig0004284:30740-30759 | Msa1340610:three_prime_UTR | 30.0% |
| CGAAATTTGAATCATCTTTC+AGG | + | tig0004284:30774-30793 | Msa1340610:intergenic | 30.0% | |
| TAATGATTATGAGTACCCTA+TGG | - | tig0004284:30969-30988 | Msa1340610:CDS | 30.0% | |
| ! | TGCATTTCAGTTTGATGATA+TGG | - | tig0004284:30999-31018 | Msa1340610:intron | 30.0% |
| ! | ATTTTACAACATGGATGCAA+AGG | - | tig0004284:31233-31252 | Msa1340610:CDS | 30.0% |
| ! | TACGGAGAAAACTTGAATTT+TGG | - | tig0004284:31282-31301 | Msa1340610:CDS | 30.0% |
| TGTAAATAGAAACCCTATTC+AGG | - | tig0004284:31356-31375 | Msa1340610:CDS | 30.0% | |
| !! | GATATCATCGTTTTGAATTG+CGG | + | tig0004284:31587-31606 | Msa1340610:intergenic | 30.0% |
| ! | AAACTCTTGCTTCGATTTTT+GGG | + | tig0004284:31833-31852 | Msa1340610:intergenic | 30.0% |
| ! | TTCCAATAAGTTGAGTATTG+CGG | + | tig0004284:31913-31932 | Msa1340610:intergenic | 30.0% |
| ! | AAATTTTACCTGAGCAACAA+TGG | + | tig0004284:32000-32019 | Msa1340610:intergenic | 30.0% |
| TAATTGAGCTGAATTAGTGA+CGG | - | tig0004284:32036-32055 | Msa1340610:CDS | 30.0% | |
| TACCTCAATAATCCAAATGA+TGG | + | tig0004284:32302-32321 | Msa1340610:intergenic | 30.0% | |
| CAAAAAACAAGAAAACACCT+TGG | + | tig0004284:32362-32381 | Msa1340610:intergenic | 30.0% | |
| !!! | TCTTTTTTTTTTCACACACG+AGG | - | tig0004284:32412-32431 | Msa1340610:intron | 30.0% |
| !!! | CTTTTTTTTTTCACACACGA+GGG | - | tig0004284:32413-32432 | Msa1340610:intron | 30.0% |
| AACTATTGGATATATGAGGA+GGG | + | tig0004284:30622-30641 | Msa1340610:intergenic | 30.0% | |
| AAACTATTGGATATATGAGG+AGG | + | tig0004284:30623-30642 | Msa1340610:intergenic | 30.0% | |
| ! | TTTTCAGTTTTTCCCATACA+AGG | - | tig0004284:30740-30759 | Msa1340610:three_prime_UTR | 30.0% |
| CGAAATTTGAATCATCTTTC+AGG | + | tig0004284:30774-30793 | Msa1340610:intergenic | 30.0% | |
| TAATGATTATGAGTACCCTA+TGG | - | tig0004284:30969-30988 | Msa1340610:CDS | 30.0% | |
| ! | TGCATTTCAGTTTGATGATA+TGG | - | tig0004284:30999-31018 | Msa1340610:intron | 30.0% |
| ! | ATTTTACAACATGGATGCAA+AGG | - | tig0004284:31233-31252 | Msa1340610:CDS | 30.0% |
| ! | TACGGAGAAAACTTGAATTT+TGG | - | tig0004284:31282-31301 | Msa1340610:CDS | 30.0% |
| TGTAAATAGAAACCCTATTC+AGG | - | tig0004284:31356-31375 | Msa1340610:CDS | 30.0% | |
| !! | GATATCATCGTTTTGAATTG+CGG | + | tig0004284:31587-31606 | Msa1340610:intergenic | 30.0% |
| ! | AAACTCTTGCTTCGATTTTT+GGG | + | tig0004284:31833-31852 | Msa1340610:intergenic | 30.0% |
| ! | TTCCAATAAGTTGAGTATTG+CGG | + | tig0004284:31913-31932 | Msa1340610:intergenic | 30.0% |
| ! | AAATTTTACCTGAGCAACAA+TGG | + | tig0004284:32000-32019 | Msa1340610:intergenic | 30.0% |
| TAATTGAGCTGAATTAGTGA+CGG | - | tig0004284:32036-32055 | Msa1340610:CDS | 30.0% | |
| TACCTCAATAATCCAAATGA+TGG | + | tig0004284:32302-32321 | Msa1340610:intergenic | 30.0% | |
| CAAAAAACAAGAAAACACCT+TGG | + | tig0004284:32362-32381 | Msa1340610:intergenic | 30.0% | |
| !!! | TCTTTTTTTTTTCACACACG+AGG | - | tig0004284:32412-32431 | Msa1340610:intron | 30.0% |
| !!! | CTTTTTTTTTTCACACACGA+GGG | - | tig0004284:32413-32432 | Msa1340610:intron | 30.0% |
| CAGGTTTGAATTCCTTGTAT+GGG | + | tig0004284:30755-30774 | Msa1340610:intergenic | 35.0% | |
| TCAGGTTTGAATTCCTTGTA+TGG | + | tig0004284:30756-30775 | Msa1340610:intergenic | 35.0% | |
| TGTTGTGTACTTACGAATTC+AGG | + | tig0004284:30812-30831 | Msa1340610:intergenic | 35.0% | |
| GAATTAACAGGGATTAATGG+AGG | - | tig0004284:30933-30952 | Msa1340610:exon | 35.0% | |
| GAAATGCAGATGAATCCATA+GGG | + | tig0004284:30987-31006 | Msa1340610:intergenic | 35.0% | |
| TGAAATGCAGATGAATCCAT+AGG | + | tig0004284:30988-31007 | Msa1340610:intergenic | 35.0% | |
| AGGAATAAGTACTCTCTTGT+GGG | + | tig0004284:31050-31069 | Msa1340610:intergenic | 35.0% | |
| GAATCCTTGAGTACTTTAGT+TGG | + | tig0004284:31177-31196 | Msa1340610:intergenic | 35.0% | |
| AAGAAGCTTAAAACCGAGAT+CGG | - | tig0004284:31258-31277 | Msa1340610:CDS | 35.0% | |
| ! | TTTGGAAGTGTGATATCTCA+AGG | - | tig0004284:31300-31319 | Msa1340610:CDS | 35.0% |
| !!! | TATAGTACCTTTTTCAGTCC+AGG | + | tig0004284:31459-31478 | Msa1340610:intergenic | 35.0% |
| !!! | TGCTGATTCGACCTTTTTAT+CGG | + | tig0004284:31736-31755 | Msa1340610:intergenic | 35.0% |
| ! | GAAACTCTTGCTTCGATTTT+TGG | + | tig0004284:31834-31853 | Msa1340610:intergenic | 35.0% |
| AAAATCGAAGCAAGAGTTTC+TGG | - | tig0004284:31834-31853 | Msa1340610:CDS | 35.0% | |
| TGATATAACCATTGTTGCTC+AGG | - | tig0004284:31989-32008 | Msa1340610:CDS | 35.0% | |
| ATCCAAAACAACCAGTTTCA+AGG | - | tig0004284:32189-32208 | Msa1340610:intron | 35.0% | |
| ATATGTTGATGCCTTGAAAC+TGG | + | tig0004284:32203-32222 | Msa1340610:intergenic | 35.0% | |
| GTCCATCATTTGGATTATTG+AGG | - | tig0004284:32297-32316 | Msa1340610:intron | 35.0% | |
| CAGGTTTGAATTCCTTGTAT+GGG | + | tig0004284:30755-30774 | Msa1340610:intergenic | 35.0% | |
| TCAGGTTTGAATTCCTTGTA+TGG | + | tig0004284:30756-30775 | Msa1340610:intergenic | 35.0% | |
| TGTTGTGTACTTACGAATTC+AGG | + | tig0004284:30812-30831 | Msa1340610:intergenic | 35.0% | |
| GAATTAACAGGGATTAATGG+AGG | - | tig0004284:30933-30952 | Msa1340610:exon | 35.0% | |
| GAAATGCAGATGAATCCATA+GGG | + | tig0004284:30987-31006 | Msa1340610:intergenic | 35.0% | |
| TGAAATGCAGATGAATCCAT+AGG | + | tig0004284:30988-31007 | Msa1340610:intergenic | 35.0% | |
| AGGAATAAGTACTCTCTTGT+GGG | + | tig0004284:31050-31069 | Msa1340610:intergenic | 35.0% | |
| GAATCCTTGAGTACTTTAGT+TGG | + | tig0004284:31177-31196 | Msa1340610:intergenic | 35.0% | |
| AAGAAGCTTAAAACCGAGAT+CGG | - | tig0004284:31258-31277 | Msa1340610:CDS | 35.0% | |
| ! | TTTGGAAGTGTGATATCTCA+AGG | - | tig0004284:31300-31319 | Msa1340610:CDS | 35.0% |
| !!! | TATAGTACCTTTTTCAGTCC+AGG | + | tig0004284:31459-31478 | Msa1340610:intergenic | 35.0% |
| !!! | TGCTGATTCGACCTTTTTAT+CGG | + | tig0004284:31736-31755 | Msa1340610:intergenic | 35.0% |
| ! | GAAACTCTTGCTTCGATTTT+TGG | + | tig0004284:31834-31853 | Msa1340610:intergenic | 35.0% |
| AAAATCGAAGCAAGAGTTTC+TGG | - | tig0004284:31834-31853 | Msa1340610:CDS | 35.0% | |
| TGATATAACCATTGTTGCTC+AGG | - | tig0004284:31989-32008 | Msa1340610:CDS | 35.0% | |
| ATCCAAAACAACCAGTTTCA+AGG | - | tig0004284:32189-32208 | Msa1340610:intron | 35.0% | |
| ATATGTTGATGCCTTGAAAC+TGG | + | tig0004284:32203-32222 | Msa1340610:intergenic | 35.0% | |
| GTCCATCATTTGGATTATTG+AGG | - | tig0004284:32297-32316 | Msa1340610:intron | 35.0% | |
| TACGAATTCAGGCATGTACT+TGG | + | tig0004284:30801-30820 | Msa1340610:intergenic | 40.0% | |
| GGAATAAGTACTCTCTTGTG+GGG | + | tig0004284:31049-31068 | Msa1340610:intergenic | 40.0% | |
| GAGGAATAAGTACTCTCTTG+TGG | + | tig0004284:31051-31070 | Msa1340610:intergenic | 40.0% | |
| GTTGATGTTGTTGGTATGAG+AGG | + | tig0004284:31070-31089 | Msa1340610:intergenic | 40.0% | |
| !! | TCGCTTGTTGTTGATGTTGT+TGG | + | tig0004284:31079-31098 | Msa1340610:intergenic | 40.0% |
| TGTTCTGTGTGCTTTCAGAA+TGG | + | tig0004284:31104-31123 | Msa1340610:intergenic | 40.0% | |
| ATTGATCTGGACTTTCAGTG+GGG | + | tig0004284:31134-31153 | Msa1340610:intergenic | 40.0% | |
| GATTGATCTGGACTTTCAGT+GGG | + | tig0004284:31135-31154 | Msa1340610:intergenic | 40.0% | |
| AGATTGATCTGGACTTTCAG+TGG | + | tig0004284:31136-31155 | Msa1340610:intergenic | 40.0% | |
| TCCTTGAGTACTTTAGTTGG+CGG | + | tig0004284:31174-31193 | Msa1340610:intergenic | 40.0% | |
| AGAAGCTTAAAACCGAGATC+GGG | - | tig0004284:31259-31278 | Msa1340610:CDS | 40.0% | |
| CATGATCTTGAGCCTGAATA+GGG | + | tig0004284:31371-31390 | Msa1340610:intergenic | 40.0% | |
| ACATGATCTTGAGCCTGAAT+AGG | + | tig0004284:31372-31391 | Msa1340610:intergenic | 40.0% | |
| TCAGGCTCAAGATCATGTTA+TGG | - | tig0004284:31374-31393 | Msa1340610:CDS | 40.0% | |
| ! | CTTTTCCCTTCGTCTTCTTT+CGG | + | tig0004284:31400-31419 | Msa1340610:intergenic | 40.0% |
| AGGAAAGAGCAATGAATCTC+TGG | + | tig0004284:31428-31447 | Msa1340610:intergenic | 40.0% | |
| !!! | CTTTTTCAGTCCAGGAAGAA+TGG | + | tig0004284:31451-31470 | Msa1340610:intergenic | 40.0% |
| CATTCTTCCTGGACTGAAAA+AGG | - | tig0004284:31449-31468 | Msa1340610:CDS | 40.0% | |
| TCTGCATGCAAAGTGAACAT+TGG | + | tig0004284:31629-31648 | Msa1340610:intergenic | 40.0% | |
| ATGTTCACTTTGCATGCAGA+TGG | - | tig0004284:31629-31648 | Msa1340610:intron | 40.0% | |
| ! | GATGGACAAGGCAACTATTT+TGG | - | tig0004284:31647-31666 | Msa1340610:intron | 40.0% |
| GGAACAAGTAGCCGATAAAA+AGG | - | tig0004284:31722-31741 | Msa1340610:CDS | 40.0% | |
| TCTATTCTCTTCGACGATGA+TGG | - | tig0004284:31771-31790 | Msa1340610:CDS | 40.0% | |
| ATCCACGGTGATAAACATTG+CGG | - | tig0004284:31876-31895 | Msa1340610:CDS | 40.0% | |
| ! | TCTCGTAAGAAGCATAAGTC+AGG | - | tig0004284:32147-32166 | Msa1340610:CDS | 40.0% |
| ! | GAAGCATAAGTCAGGTTTTG+AGG | - | tig0004284:32155-32174 | Msa1340610:CDS | 40.0% |
| ! | TGCCTTGAAACTGGTTGTTT+TGG | + | tig0004284:32194-32213 | Msa1340610:intergenic | 40.0% |
| AATCTCCACAACGTGAAAGA+GGG | + | tig0004284:32482-32501 | Msa1340610:intergenic | 40.0% | |
| TACGAATTCAGGCATGTACT+TGG | + | tig0004284:30801-30820 | Msa1340610:intergenic | 40.0% | |
| GGAATAAGTACTCTCTTGTG+GGG | + | tig0004284:31049-31068 | Msa1340610:intergenic | 40.0% | |
| GAGGAATAAGTACTCTCTTG+TGG | + | tig0004284:31051-31070 | Msa1340610:intergenic | 40.0% | |
| GTTGATGTTGTTGGTATGAG+AGG | + | tig0004284:31070-31089 | Msa1340610:intergenic | 40.0% | |
| !! | TCGCTTGTTGTTGATGTTGT+TGG | + | tig0004284:31079-31098 | Msa1340610:intergenic | 40.0% |
| TGTTCTGTGTGCTTTCAGAA+TGG | + | tig0004284:31104-31123 | Msa1340610:intergenic | 40.0% | |
| ATTGATCTGGACTTTCAGTG+GGG | + | tig0004284:31134-31153 | Msa1340610:intergenic | 40.0% | |
| GATTGATCTGGACTTTCAGT+GGG | + | tig0004284:31135-31154 | Msa1340610:intergenic | 40.0% | |
| AGATTGATCTGGACTTTCAG+TGG | + | tig0004284:31136-31155 | Msa1340610:intergenic | 40.0% | |
| TCCTTGAGTACTTTAGTTGG+CGG | + | tig0004284:31174-31193 | Msa1340610:intergenic | 40.0% | |
| AGAAGCTTAAAACCGAGATC+GGG | - | tig0004284:31259-31278 | Msa1340610:CDS | 40.0% | |
| CATGATCTTGAGCCTGAATA+GGG | + | tig0004284:31371-31390 | Msa1340610:intergenic | 40.0% | |
| ACATGATCTTGAGCCTGAAT+AGG | + | tig0004284:31372-31391 | Msa1340610:intergenic | 40.0% | |
| TCAGGCTCAAGATCATGTTA+TGG | - | tig0004284:31374-31393 | Msa1340610:CDS | 40.0% | |
| ! | CTTTTCCCTTCGTCTTCTTT+CGG | + | tig0004284:31400-31419 | Msa1340610:intergenic | 40.0% |
| AGGAAAGAGCAATGAATCTC+TGG | + | tig0004284:31428-31447 | Msa1340610:intergenic | 40.0% | |
| !!! | CTTTTTCAGTCCAGGAAGAA+TGG | + | tig0004284:31451-31470 | Msa1340610:intergenic | 40.0% |
| CATTCTTCCTGGACTGAAAA+AGG | - | tig0004284:31449-31468 | Msa1340610:CDS | 40.0% | |
| TCTGCATGCAAAGTGAACAT+TGG | + | tig0004284:31629-31648 | Msa1340610:intergenic | 40.0% | |
| ATGTTCACTTTGCATGCAGA+TGG | - | tig0004284:31629-31648 | Msa1340610:intron | 40.0% | |
| ! | GATGGACAAGGCAACTATTT+TGG | - | tig0004284:31647-31666 | Msa1340610:intron | 40.0% |
| GGAACAAGTAGCCGATAAAA+AGG | - | tig0004284:31722-31741 | Msa1340610:CDS | 40.0% | |
| TCTATTCTCTTCGACGATGA+TGG | - | tig0004284:31771-31790 | Msa1340610:CDS | 40.0% | |
| ATCCACGGTGATAAACATTG+CGG | - | tig0004284:31876-31895 | Msa1340610:CDS | 40.0% | |
| ! | TCTCGTAAGAAGCATAAGTC+AGG | - | tig0004284:32147-32166 | Msa1340610:CDS | 40.0% |
| ! | GAAGCATAAGTCAGGTTTTG+AGG | - | tig0004284:32155-32174 | Msa1340610:CDS | 40.0% |
| ! | TGCCTTGAAACTGGTTGTTT+TGG | + | tig0004284:32194-32213 | Msa1340610:intergenic | 40.0% |
| AATCTCCACAACGTGAAAGA+GGG | + | tig0004284:32482-32501 | Msa1340610:intergenic | 40.0% | |
| GCTGAGACAACAGATTGATC+TGG | + | tig0004284:31147-31166 | Msa1340610:intergenic | 45.0% | |
| ! | ACCGCCAACTAAAGTACTCA+AGG | - | tig0004284:31170-31189 | Msa1340610:CDS | 45.0% |
| CTTAAAACCGAGATCGGGTA+CGG | - | tig0004284:31264-31283 | Msa1340610:CDS | 45.0% | |
| TTATGGCCGAAAGAAGACGA+AGG | - | tig0004284:31391-31410 | Msa1340610:CDS | 45.0% | |
| TATGGCCGAAAGAAGACGAA+GGG | - | tig0004284:31392-31411 | Msa1340610:CDS | 45.0% | |
| TTTCAGTCCAGGAAGAATGG+AGG | + | tig0004284:31448-31467 | Msa1340610:intergenic | 45.0% | |
| ACTTTGCATGCAGATGGACA+AGG | - | tig0004284:31635-31654 | Msa1340610:intron | 45.0% | |
| GGAACGAGTGAAGACATTAG+AGG | - | tig0004284:31701-31720 | Msa1340610:CDS | 45.0% | |
| GACATGCTCATCAGAATCCA+CGG | - | tig0004284:31861-31880 | Msa1340610:CDS | 45.0% | |
| GGCCGCAATACTCAACTTAT+TGG | - | tig0004284:31908-31927 | Msa1340610:CDS | 45.0% | |
| CAATCTCCACAACGTGAAAG+AGG | + | tig0004284:32483-32502 | Msa1340610:intergenic | 45.0% | |
| GCTGAGACAACAGATTGATC+TGG | + | tig0004284:31147-31166 | Msa1340610:intergenic | 45.0% | |
| ! | ACCGCCAACTAAAGTACTCA+AGG | - | tig0004284:31170-31189 | Msa1340610:CDS | 45.0% |
| CTTAAAACCGAGATCGGGTA+CGG | - | tig0004284:31264-31283 | Msa1340610:CDS | 45.0% | |
| TTATGGCCGAAAGAAGACGA+AGG | - | tig0004284:31391-31410 | Msa1340610:CDS | 45.0% | |
| TATGGCCGAAAGAAGACGAA+GGG | - | tig0004284:31392-31411 | Msa1340610:CDS | 45.0% | |
| TTTCAGTCCAGGAAGAATGG+AGG | + | tig0004284:31448-31467 | Msa1340610:intergenic | 45.0% | |
| ACTTTGCATGCAGATGGACA+AGG | - | tig0004284:31635-31654 | Msa1340610:intron | 45.0% | |
| GGAACGAGTGAAGACATTAG+AGG | - | tig0004284:31701-31720 | Msa1340610:CDS | 45.0% | |
| GACATGCTCATCAGAATCCA+CGG | - | tig0004284:31861-31880 | Msa1340610:CDS | 45.0% | |
| GGCCGCAATACTCAACTTAT+TGG | - | tig0004284:31908-31927 | Msa1340610:CDS | 45.0% | |
| CAATCTCCACAACGTGAAAG+AGG | + | tig0004284:32483-32502 | Msa1340610:intergenic | 45.0% | |
| ! | GTTTTCTCCGTACCCGATCT+CGG | + | tig0004284:31274-31293 | Msa1340610:intergenic | 50.0% |
| GCTCTTTCCTCCATTCTTCC+TGG | - | tig0004284:31438-31457 | Msa1340610:CDS | 50.0% | |
| TAAACATTGCGGCCGATCTG+CGG | - | tig0004284:31887-31906 | Msa1340610:CDS | 50.0% | |
| TTCGTCCCTCTTTCACGTTG+TGG | - | tig0004284:32474-32493 | Msa1340610:intron | 50.0% | |
| ! | GTTTTCTCCGTACCCGATCT+CGG | + | tig0004284:31274-31293 | Msa1340610:intergenic | 50.0% |
| GCTCTTTCCTCCATTCTTCC+TGG | - | tig0004284:31438-31457 | Msa1340610:CDS | 50.0% | |
| TAAACATTGCGGCCGATCTG+CGG | - | tig0004284:31887-31906 | Msa1340610:CDS | 50.0% | |
| TTCGTCCCTCTTTCACGTTG+TGG | - | tig0004284:32474-32493 | Msa1340610:intron | 50.0% | |
| GGCCGCAATGTTTATCACCG+TGG | + | tig0004284:31881-31900 | Msa1340610:intergenic | 55.0% | |
| ! | TGAGTATTGCGGCCGCAGAT+CGG | + | tig0004284:31902-31921 | Msa1340610:intergenic | 55.0% |
| GGCCGCAATGTTTATCACCG+TGG | + | tig0004284:31881-31900 | Msa1340610:intergenic | 55.0% | |
| ! | TGAGTATTGCGGCCGCAGAT+CGG | + | tig0004284:31902-31921 | Msa1340610:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0004284 | gene | 30583 | 32542 | 30583 | ID=Msa1340610;Name=Msa1340610 |
| tig0004284 | mRNA | 30583 | 32542 | 30583 | ID=Msa1340610-mRNA-1;Parent=Msa1340610;Name=Msa1340610-mRNA-1;_AED=0.02;_eAED=0.02;_QI=64|1|1|1|0.75|0.6|5|353|334 |
| tig0004284 | exon | 30583 | 31010 | 30583 | ID=Msa1340610-mRNA-1:exon:2769;Parent=Msa1340610-mRNA-1 |
| tig0004284 | exon | 31115 | 31477 | 31115 | ID=Msa1340610-mRNA-1:exon:2768;Parent=Msa1340610-mRNA-1 |
| tig0004284 | exon | 31655 | 32182 | 31655 | ID=Msa1340610-mRNA-1:exon:2767;Parent=Msa1340610-mRNA-1 |
| tig0004284 | exon | 32308 | 32378 | 32308 | ID=Msa1340610-mRNA-1:exon:2766;Parent=Msa1340610-mRNA-1 |
| tig0004284 | exon | 32511 | 32542 | 32511 | ID=Msa1340610-mRNA-1:exon:2765;Parent=Msa1340610-mRNA-1 |
| tig0004284 | five_prime_UTR | 32511 | 32542 | 32511 | ID=Msa1340610-mRNA-1:five_prime_utr;Parent=Msa1340610-mRNA-1 |
| tig0004284 | five_prime_UTR | 32347 | 32378 | 32347 | ID=Msa1340610-mRNA-1:five_prime_utr;Parent=Msa1340610-mRNA-1 |
| tig0004284 | CDS | 32308 | 32346 | 32308 | ID=Msa1340610-mRNA-1:cds;Parent=Msa1340610-mRNA-1 |
| tig0004284 | CDS | 31655 | 32182 | 31655 | ID=Msa1340610-mRNA-1:cds;Parent=Msa1340610-mRNA-1 |
| tig0004284 | CDS | 31115 | 31477 | 31115 | ID=Msa1340610-mRNA-1:cds;Parent=Msa1340610-mRNA-1 |
| tig0004284 | CDS | 30936 | 31010 | 30936 | ID=Msa1340610-mRNA-1:cds;Parent=Msa1340610-mRNA-1 |
| tig0004284 | three_prime_UTR | 30583 | 30935 | 30583 | ID=Msa1340610-mRNA-1:three_prime_utr;Parent=Msa1340610-mRNA-1 |
| Gene Sequence |
| Protein sequence |
