AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1305820


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1305820 MtrunA17_Chr1g0191231 99.445 541 3 0 1 541 1 541 0.0 1093
Msa1305820 MtrunA17_Chr7g0273581 73.657 577 107 4 9 540 3 579 0.0 847
Msa1305820 MtrunA17_Chr4g0066681 74.669 529 128 2 7 532 6 531 0.0 801
Msa1305820 MtrunA17_Chr1g0191531 63.048 525 161 4 23 532 23 529 0.0 660
Msa1305820 MtrunA17_Chr3g0100591 61.858 506 185 4 19 521 24 524 0.0 623
Msa1305820 MtrunA17_Chr1g0191541 53.435 524 173 6 13 532 13 469 5.41e-179 512
Msa1305820 MtrunA17_Chr2g0291231 36.224 196 107 7 253 445 14 194 3.87e-23 99.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1305820 AT3G05030.1 77.281 537 118 2 7 539 6 542 0.0 847
Msa1305820 AT3G05030.4 77.281 537 118 2 7 539 6 542 0.0 847
Msa1305820 AT3G05030.2 77.281 537 118 2 7 539 6 542 0.0 847
Msa1305820 AT5G27150.1 77.674 533 115 3 5 536 2 531 0.0 822
Msa1305820 AT3G06370.3 73.211 545 135 3 1 540 1 539 0.0 760
Msa1305820 AT3G06370.4 73.211 545 135 3 1 540 1 539 0.0 760
Msa1305820 AT3G05030.3 81.922 437 73 1 7 437 6 442 0.0 724
Msa1305820 AT3G06370.1 74.263 509 120 3 1 504 1 503 0.0 711
Msa1305820 AT3G06370.2 80.446 404 79 0 1 404 1 404 0.0 637
Msa1305820 AT5G55470.1 58.712 528 203 5 1 521 1 520 0.0 607
Msa1305820 AT1G79610.1 31.828 443 264 15 18 445 20 439 3.31e-48 176
Msa1305820 AT1G54370.1 31.081 518 312 18 19 519 20 509 4.39e-41 155

Find 140 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTATTGTATAGTCTTGTATT+TGG 0.133117 8_3:-69493135 Msa1305820:CDS
TACTACTGGACTTTGAAATT+TGG 0.159315 8_3:-69495250 Msa1305820:five_prime_UTR
CTTTCTCTGTTCGAATTCTT+TGG 0.185435 8_3:-69495771 Msa1305820:five_prime_UTR
TTCAATTGCATTGCATTTCT+TGG 0.206910 8_3:-69493034 Msa1305820:CDS
TCATTCATTGTCCCACTTCT+AGG 0.209054 8_3:-69490406 Msa1305820:CDS
AATGCTACTATCAATCATTT+TGG 0.223873 8_3:-69495738 Msa1305820:intron
TATTGTATAGTCTTGTATTT+GGG 0.239719 8_3:-69493134 Msa1305820:CDS
AGTGGGACAATGAATGATTT+TGG 0.240398 8_3:+69490412 None:intergenic
AGCTCAGAAACATAAATATC+TGG 0.260306 8_3:-69495283 Msa1305820:five_prime_UTR
AACACATATTACACATTTCA+TGG 0.268912 8_3:+69490163 None:intergenic
CTCACACTGTTCATCGATTA+TGG 0.271792 8_3:-69490300 Msa1305820:CDS
TCAAAACTCTTTCTATTTAC+CGG 0.284679 8_3:-69495831 Msa1305820:five_prime_UTR
ATCACATCATTTGGAGCTAT+TGG 0.297209 8_3:-69493725 Msa1305820:CDS
AGTGACTCAACAAGATTATT+AGG 0.313295 8_3:-69496070 Msa1305820:five_prime_UTR
AGATCAGAAGGTTCTTAAAA+TGG 0.321486 8_3:-69495308 Msa1305820:five_prime_UTR
CTGTGTGCTTGTATTGTCCT+TGG 0.329640 8_3:-69495064 Msa1305820:CDS
AGACTCTGTTTGCACATTGC+AGG 0.351154 8_3:-69493264 Msa1305820:intron
TTCATGACTATCACATCATT+TGG 0.361443 8_3:-69493734 Msa1305820:CDS
TTGATGCAGTTCACCATGTC+GGG 0.365442 8_3:-69490969 Msa1305820:intron
TGTTCGGTCGGTGAATTTCA+TGG 0.372487 8_3:+69490350 None:intergenic
ATTACAATTTATCAGGTGTT+TGG 0.372668 8_3:-69490517 Msa1305820:intron
GGAGAGAGATGAGAAAGTTC+TGG 0.374087 8_3:+69495935 None:intergenic
TTGTTGGGTCTAATACTTCT+TGG 0.378696 8_3:-69491409 Msa1305820:CDS
TCTGTCGATATTCTATTTAG+AGG 0.379221 8_3:+69496092 None:intergenic
TTTAGTCAAGTTGGATAAGA+AGG 0.381030 8_3:+69491360 None:intergenic
CAAGTTGGATAAGAAGGATA+AGG 0.382746 8_3:+69491366 None:intergenic
AGCTGCAAGTTCAGTATTGT+TGG 0.385899 8_3:-69491425 Msa1305820:CDS
TGTTTCTATGAACTTGTTTG+TGG 0.386146 8_3:-69495092 Msa1305820:CDS
AATGGCACTTGCGTATAATC+AGG 0.391176 8_3:-69491163 Msa1305820:intron
CTGGGATTCATTATTACTAC+TGG 0.398345 8_3:-69495264 Msa1305820:five_prime_UTR
ATCTTTATCTTCCTTTATGT+TGG 0.399431 8_3:-69491721 Msa1305820:CDS
GATTCTGAAGCTGATCTTGA+AGG 0.399508 8_3:-69490373 Msa1305820:CDS
TATCTTCCTTTATGTTGGTA+TGG 0.401826 8_3:-69491716 Msa1305820:CDS
TAGGTTATCATTTGGTGGGC+TGG 0.409191 8_3:-69491207 Msa1305820:CDS
AATGGAAGTTTGTTAGTGAT+AGG 0.409420 8_3:-69491675 Msa1305820:intron
ACTGAAAACTTACAATCAAA+AGG 0.409719 8_3:+69494996 None:intergenic
TCTTCTCAGGGTATTTGCAC+TGG 0.411364 8_3:-69494650 Msa1305820:intron
TCAATTGCATTGCATTTCTT+GGG 0.411660 8_3:-69493033 Msa1305820:CDS
CAAAGAATTCGAACAGAGAA+AGG 0.413872 8_3:+69495772 None:intergenic
CAATCCCTAGTTCGAATTCC+CGG 0.415642 8_3:+69495812 None:intergenic
TATGAGAGGTGCTGTTTCAA+TGG 0.419953 8_3:-69491181 Msa1305820:CDS
GACGATGCAGGTGCTAAATC+AGG 0.421808 8_3:-69493169 Msa1305820:intron
TACCCGGCATTGAATATAAT+AGG 0.423054 8_3:+69494542 None:intergenic
GGTAGTTGTTGTTATACAAT+GGG 0.424935 8_3:+69496136 None:intergenic
CTGGAAATCGGCGATTATCT+AGG 0.425226 8_3:-69493388 Msa1305820:intron
CGGTAGTTGTTGTTATACAA+TGG 0.426319 8_3:+69496135 None:intergenic
AATACAAGACTATACAATAA+AGG 0.427303 8_3:+69493138 None:intergenic
GGTAAGAATGCCACTCAGAT+AGG 0.440033 8_3:+69491963 None:intergenic
TGAACGCAATGGTAATCAAT+GGG 0.442698 8_3:-69490200 Msa1305820:CDS
GGCTTACCACTGTGCTGAAA+AGG 0.442970 8_3:+69490892 None:intergenic
CTTGGTGAGCCAGGTTCTAC+AGG 0.443445 8_3:+69490223 None:intergenic
CAAGATCAGCTTCAGAATCT+CGG 0.443542 8_3:+69490377 None:intergenic
ATTTACCGGGAATTCGAACT+AGG 0.447409 8_3:-69495817 Msa1305820:five_prime_UTR
GATATTGGGCCACTGGAAAT+CGG 0.450578 8_3:-69493400 Msa1305820:CDS
AGTAAAGCACGAAGGCTGTT+CGG 0.452548 8_3:+69490334 None:intergenic
TTGTTATGTCTCATTATACT+TGG 0.457147 8_3:-69491924 Msa1305820:CDS
TTGCGTTCACTTGGTGAGCC+AGG 0.466834 8_3:+69490214 None:intergenic
TGCTGACTAAGCCACTCATA+AGG 0.466961 8_3:-69490492 Msa1305820:CDS
TGTGAACTAAAATCCATCAT+TGG 0.466979 8_3:+69489883 None:intergenic
CAAAACTCTTTCTATTTACC+GGG 0.468448 8_3:-69495830 Msa1305820:five_prime_UTR
GGGCATCCATACCAACATAA+AGG 0.472613 8_3:+69491710 None:intergenic
AAGTTGGATAAGAAGGATAA+GGG 0.473086 8_3:+69491367 None:intergenic
GTGAACGCAATGGTAATCAA+TGG 0.474866 8_3:-69490201 Msa1305820:CDS
GTTGTTGTTATACAATGGGT+TGG 0.476547 8_3:+69496140 None:intergenic
AAGAAATGCAATGCAATTGA+AGG 0.486550 8_3:+69493036 None:intergenic
GCTGCAAGTTCAGTATTGTT+GGG 0.488198 8_3:-69491424 Msa1305820:CDS
CTTGCAGCTATAGATGTTCC+AGG 0.488582 8_3:+69491439 None:intergenic
AACAATACCACAAAAGAATA+CGG 0.489252 8_3:+69491942 None:intergenic
TACAATCAAAAGGGCAGTGA+TGG 0.489549 8_3:+69495006 None:intergenic
AAGATCAGCTTCAGAATCTC+GGG 0.489748 8_3:+69490378 None:intergenic
TGATTACCATTGCGTTCACT+TGG 0.493357 8_3:+69490205 None:intergenic
TTATGTTGGTATGGATGCCC+TGG 0.498703 8_3:-69491707 Msa1305820:CDS
AACAGAAGCATGATCGGAAG+TGG 0.501203 8_3:+69495114 None:intergenic
ACACATACACAAACATGTAA+TGG 0.502601 8_3:+69489940 None:intergenic
CCGCCTATTATATTCAATGC+CGG 0.505451 8_3:-69494545 Msa1305820:CDS
CTATCTACACTCTCCAATGA+TGG 0.507711 8_3:-69489896 Msa1305820:three_prime_UTR
GTGATGAATTATGCAGAAGA+AGG 0.509014 8_3:+69495869 None:intergenic
CGCCTATTATATTCAATGCC+GGG 0.509321 8_3:-69494544 Msa1305820:intron
GAGGATGGATATTGGGCCAC+TGG 0.510833 8_3:-69493407 Msa1305820:CDS
TATAGTCTTGTATTTGGGGA+AGG 0.512404 8_3:-69493129 Msa1305820:CDS
TGCTTGCTACAAACAAATAC+AGG 0.513396 8_3:+69493004 None:intergenic
TTTGATGCAGTTCACCATGT+CGG 0.516704 8_3:-69490970 Msa1305820:intron
TTTGTAGCAAGCACACTCCT+TGG 0.519299 8_3:-69492994 Msa1305820:CDS
GGCATACCTCTCCTATATGC+TGG 0.520496 8_3:-69492083 Msa1305820:CDS
TGGCCATACTTGCTGTCTGA+AGG 0.525975 8_3:+69491315 None:intergenic
ACCTACCTCAGCCAGCATAT+AGG 0.526592 8_3:+69492072 None:intergenic
GCTCAGAAACATAAATATCT+GGG 0.530136 8_3:-69495282 Msa1305820:five_prime_UTR
GGTTGCTCTTATGATGCTAA+TGG 0.530635 8_3:-69492104 Msa1305820:CDS
AGCAACGCGTGATGATGAAT+CGG 0.531376 8_3:+69496008 None:intergenic
GTGGAGGGTGGACGACATCA+TGG 0.532330 8_3:-69495179 Msa1305820:exon
CTGAAAACTTACAATCAAAA+GGG 0.534892 8_3:+69494997 None:intergenic
AGAAACAACAGAAGCATGAT+CGG 0.540009 8_3:+69495108 None:intergenic
AGAGAGATATTATATATCTC+CGG 0.540483 8_3:+69496115 None:intergenic
ATGCAATTGAAGGGTTCAGT+TGG 0.548283 8_3:+69493046 None:intergenic
TTTGAGTAGCTAGTATGAGA+TGG 0.559053 8_3:-69490017 Msa1305820:three_prime_UTR
CATTGTATAACAACAACTAC+CGG 0.568653 8_3:-69496134 Msa1305820:five_prime_UTR
TTTACCGGGAATTCGAACTA+GGG 0.570945 8_3:-69495816 Msa1305820:five_prime_UTR
TGATGAATTATGCAGAAGAA+GGG 0.572686 8_3:+69495870 None:intergenic
AAGAGCAACCTCACGATCTG+TGG 0.575236 8_3:+69492117 None:intergenic
ATCTTCTCGAGGAGAATCGA+TGG 0.579050 8_3:-69495039 Msa1305820:CDS
AATCGATGAACAGTGTGAGT+TGG 0.579424 8_3:+69490304 None:intergenic
TCATCATCACGCGTTGCTCG+AGG 0.587162 8_3:-69496003 Msa1305820:five_prime_UTR
AAGCACACTCCTTGGCGTTG+TGG 0.587805 8_3:-69492986 Msa1305820:intron
TCTCGGGAATCTCCTAGAAG+TGG 0.589238 8_3:+69490394 None:intergenic
CTTGTGTTGATGAGATCAGA+AGG 0.590827 8_3:-69495320 Msa1305820:five_prime_UTR
TGAATATAATAGGCGGCAGA+AGG 0.597021 8_3:+69494552 None:intergenic
ATCTTGTGTCATTATAACCA+CGG 0.600760 8_3:-69493693 Msa1305820:CDS
TCTTGTGTCATTATAACCAC+GGG 0.605584 8_3:-69493692 Msa1305820:intron
CCTCTCCTATATGCTGGCTG+AGG 0.606924 8_3:-69492077 Msa1305820:intron
TGGTGGGCTGGTCTTATGAG+AGG 0.607118 8_3:-69491195 Msa1305820:CDS
GATAAAGATCTCAGCAACAA+AGG 0.607883 8_3:+69491735 None:intergenic
CTCGGGAATCTCCTAGAAGT+GGG 0.609122 8_3:+69490395 None:intergenic
ATTGTATAGTCTTGTATTTG+GGG 0.609143 8_3:-69493133 Msa1305820:CDS
AGAAATGCAATGCAATTGAA+GGG 0.611163 8_3:+69493037 None:intergenic
AAGCACGAAGGCTGTTCGGT+CGG 0.612423 8_3:+69490338 None:intergenic
TGTCCTTGGTCATCTTCTCG+AGG 0.623388 8_3:-69495050 Msa1305820:CDS
CTCAACAAAATTTCACTACG+AGG 0.628436 8_3:+69490043 None:intergenic
TTAGGAGTGATAATCTTCCA+CGG 0.640851 8_3:-69496052 Msa1305820:five_prime_UTR
TAGTTGAGTATGCCCCGACA+TGG 0.643424 8_3:+69490956 None:intergenic
TTACATAATAGACAGAGAGA+TGG 0.644211 8_3:+69489990 None:intergenic
TGATGCAGTTCACCATGTCG+GGG 0.644290 8_3:-69490968 Msa1305820:intron
CAGGCACTCCACAGATCGTG+AGG 0.650350 8_3:-69492125 Msa1305820:CDS
AAGGACAACAGTGATGGTGC+TGG 0.652906 8_3:+69490911 None:intergenic
AGATAATCGCCGATTTCCAG+TGG 0.654519 8_3:+69493391 None:intergenic
GAGAAAGTTCTGGAAGACAA+TGG 0.655034 8_3:+69495945 None:intergenic
GATCTCAGCAACAAAGGACA+AGG 0.655763 8_3:+69491741 None:intergenic
TGTGCAAACAGAGTCTGTTG+CGG 0.676521 8_3:+69493271 None:intergenic
AGGCATTTACCACAACGCCA+AGG 0.680339 8_3:+69492977 None:intergenic
GGCTCACCAAGTGAACGCAA+TGG 0.680619 8_3:-69490211 Msa1305820:CDS
CCTCAGCCAGCATATAGGAG+AGG 0.687456 8_3:+69492077 None:intergenic
GAACGCAATGGTAATCAATG+GGG 0.694035 8_3:-69490199 Msa1305820:CDS
CCGGCATTGAATATAATAGG+CGG 0.694673 8_3:+69494545 None:intergenic
AGAAAGAGAGAAAATACACG+TGG 0.697943 8_3:+69495914 None:intergenic
GCTGAAAAGGACAACAGTGA+TGG 0.701655 8_3:+69490905 None:intergenic
GGTAGTAGAAGCCTTATGAG+TGG 0.701911 8_3:+69490481 None:intergenic
TCTCCTCGAGAAGATGACCA+AGG 0.718020 8_3:+69495047 None:intergenic
ATGCAGTTAACCTATCTGAG+TGG 0.719464 8_3:-69491973 Msa1305820:intron
TGCATTGAAAAGAACCACTG+AGG 0.727765 8_3:+69493089 None:intergenic
TGTGAATGATGCTACCTCAG+TGG 0.753451 8_3:-69493103 Msa1305820:CDS
GAGTTGATAGTAAAGCACGA+AGG 0.775920 8_3:+69490326 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTTTTTATTTTTGTATAT+TGG - chr8_3:69490589-69490608 Msa1305820:intron 10.0%
!!! AAAAACATGATTTAATTTGA+CGG - chr8_3:69490472-69490491 Msa1305820:CDS 15.0%
!!! GCATCTATTTATTTATTTTT+TGG - chr8_3:69491305-69491324 Msa1305820:intron 15.0%
!!! ATTTATTTTTTGGTTTCTAT+TGG - chr8_3:69491315-69491334 Msa1305820:intron 15.0%
!! AAATTAATTTATGCAAAAAG+AGG - chr8_3:69491726-69491745 Msa1305820:CDS 15.0%
!!! TGGTTATGAATTTTTTTATA+TGG + chr8_3:69492081-69492100 None:intergenic 15.0%
!!! AATATTTCTTTTAGTTGATT+AGG + chr8_3:69492499-69492518 None:intergenic 15.0%
!! ATGTTATATTGAAAATACAA+TGG + chr8_3:69493240-69493259 None:intergenic 15.0%
!! ATATATACAATATAACAGAT+TGG + chr8_3:69493277-69493296 None:intergenic 15.0%
!! TAATATTTGAACATTTAGAA+TGG + chr8_3:69493547-69493566 None:intergenic 15.0%
!! AAATAATATAATGAAGAGAT+AGG - chr8_3:69493588-69493607 Msa1305820:intron 15.0%
!! AAATAATTACATTGTTTCAA+TGG - chr8_3:69493753-69493772 Msa1305820:CDS 15.0%
!!! AAATAGAAAGAGTTTTGAAA+TGG + chr8_3:69490181-69490200 None:intergenic 20.0%
!!! AAAACATGATTTAATTTGAC+GGG - chr8_3:69490473-69490492 Msa1305820:CDS 20.0%
!! AGGAATATATATTACCAAAT+AGG - chr8_3:69490555-69490574 Msa1305820:intron 20.0%
!!! ATTTGTCATGTTTTGTATAT+TGG - chr8_3:69490629-69490648 Msa1305820:intron 20.0%
!! CCTAATAAATAAATCTAAAG+AGG + chr8_3:69492357-69492376 None:intergenic 20.0%
!! CCTCTTTAGATTTATTTATT+AGG - chr8_3:69492354-69492373 Msa1305820:intron 20.0%
!!! TTGTGATAATTTTTAGCTAT+TGG - chr8_3:69492709-69492728 Msa1305820:intron 20.0%
!! AATACAAGACTATACAATAA+AGG + chr8_3:69492879-69492898 None:intergenic 20.0%
!!! TTATTGTATAGTCTTGTATT+TGG - chr8_3:69492879-69492898 Msa1305820:intron 20.0%
!!! TATTGTATAGTCTTGTATTT+GGG - chr8_3:69492880-69492899 Msa1305820:intron 20.0%
!! TATTGAAAATACAATGGAAA+TGG + chr8_3:69493234-69493253 None:intergenic 20.0%
!! TTCAATATAACATGATATGA+TGG - chr8_3:69493247-69493266 Msa1305820:intron 20.0%
!!! GTTTTGGATATTTGAATAAT+TGG - chr8_3:69494898-69494917 Msa1305820:intron 20.0%
!! AGTTATAGCTATTTATTGTT+TGG + chr8_3:69494936-69494955 None:intergenic 20.0%
!! CAAGTTAATTACAATTTATC+AGG - chr8_3:69495490-69495509 Msa1305820:intron 20.0%
!! TAAAGAAAAATTTCACTACT+AGG + chr8_3:69495941-69495960 None:intergenic 20.0%
! AGAGAGATATTATATATCTC+CGG + chr8_3:69489902-69489921 None:intergenic 25.0%
! TCAAAACTCTTTCTATTTAC+CGG - chr8_3:69490183-69490202 Msa1305820:exon 25.0%
!! AATGCTACTATCAATCATTT+TGG - chr8_3:69490276-69490295 Msa1305820:CDS 25.0%
!!! TTTTCTTTTGCCTTGTTTTT+TGG - chr8_3:69490522-69490541 Msa1305820:intron 25.0%
! AATTCCAATTCCAAAAAACA+AGG + chr8_3:69490535-69490554 None:intergenic 25.0%
!!! TGTTTTTTGGAATTGGAATT+AGG - chr8_3:69490535-69490554 Msa1305820:intron 25.0%
! TATATTACCAAATAGGTTCT+AGG - chr8_3:69490562-69490581 Msa1305820:intron 25.0%
!!! AAATCTGCTTTTGAAATTTG+TGG - chr8_3:69490816-69490835 Msa1305820:intron 25.0%
! CTGAAAACTTACAATCAAAA+GGG + chr8_3:69491020-69491039 None:intergenic 25.0%
! ACTGAAAACTTACAATCAAA+AGG + chr8_3:69491021-69491040 None:intergenic 25.0%
! AACTCATTCTCCAAATATTA+TGG - chr8_3:69491081-69491100 Msa1305820:intron 25.0%
! ACTCATTCTCCAAATATTAT+GGG - chr8_3:69491082-69491101 Msa1305820:intron 25.0%
! ATGTGATGTTCCAATTAAAA+GGG - chr8_3:69491564-69491583 Msa1305820:intron 25.0%
! CTAGTTTCAAATCATCATAT+TGG + chr8_3:69491660-69491679 None:intergenic 25.0%
! ATAATTAACGGTTTACTCAA+TGG - chr8_3:69491750-69491769 Msa1305820:CDS 25.0%
!!! TGCTTTTTTAAAAGTGACTT+AGG - chr8_3:69491847-69491866 Msa1305820:intron 25.0%
! CTAAGTGTAGTTAATTTAAG+AGG + chr8_3:69491932-69491951 None:intergenic 25.0%
! AACTAAAACAGCTATTCTAA+TGG - chr8_3:69492026-69492045 Msa1305820:intron 25.0%
!!! TGAATGAAGTATTTTTGAAG+GGG + chr8_3:69492113-69492132 None:intergenic 25.0%
!!! CTGAATGAAGTATTTTTGAA+GGG + chr8_3:69492114-69492133 None:intergenic 25.0%
! TGTTCTCTGTAATATATTTC+AGG - chr8_3:69492224-69492243 Msa1305820:intron 25.0%
! TAAATATGAGCCATTATTTC+AGG - chr8_3:69492566-69492585 Msa1305820:intron 25.0%
!!! ATTGTATAGTCTTGTATTTG+GGG - chr8_3:69492881-69492900 Msa1305820:intron 25.0%
! GTTATTAAAAAGCTGTACAT+TGG - chr8_3:69493186-69493205 Msa1305820:intron 25.0%
! AAGCAATGTTCTATGTTAAA+TGG - chr8_3:69493427-69493446 Msa1305820:CDS 25.0%
! TATATTGAATCCTATCATTC+TGG + chr8_3:69493470-69493489 None:intergenic 25.0%
!!! TCTTAAATTTGTTGCTGTTT+AGG - chr8_3:69493728-69493747 Msa1305820:CDS 25.0%
!! AGAACTTTAGTAATGTTTTC+TGG - chr8_3:69493970-69493989 Msa1305820:intron 25.0%
! AACAATACCACAAAAGAATA+CGG + chr8_3:69494075-69494094 None:intergenic 25.0%
! TTGTTATGTCTCATTATACT+TGG - chr8_3:69494090-69494109 Msa1305820:intron 25.0%
! ATCTTTATCTTCCTTTATGT+TGG - chr8_3:69494293-69494312 Msa1305820:intron 25.0%
! AAAAATCGCTCAGTAAAAAA+GGG + chr8_3:69494410-69494429 None:intergenic 25.0%
! TAAAAATCGCTCAGTAAAAA+AGG + chr8_3:69494411-69494430 None:intergenic 25.0%
! TAGGAAGAAAAAAACAGTTA+AGG + chr8_3:69494524-69494543 None:intergenic 25.0%
!!! TTGTGATTTTTTAGTCAAGT+TGG + chr8_3:69494666-69494685 None:intergenic 25.0%
! AAATGATAACCTAAAATGAG+GGG + chr8_3:69494800-69494819 None:intergenic 25.0%
! CAAATGATAACCTAAAATGA+GGG + chr8_3:69494801-69494820 None:intergenic 25.0%
!!! ATTTTAGGTTATCATTTGGT+GGG - chr8_3:69494803-69494822 Msa1305820:intron 25.0%
! TATAACTGATCCTATCTATT+GGG - chr8_3:69494949-69494968 Msa1305820:intron 25.0%
! AAAGAATTTCCTACATTTCA+TGG + chr8_3:69495334-69495353 None:intergenic 25.0%
! ATTACAATTTATCAGGTGTT+TGG - chr8_3:69495497-69495516 Msa1305820:intron 25.0%
! AACACATATTACACATTTCA+TGG + chr8_3:69495854-69495873 None:intergenic 25.0%
! GGTAGTTGTTGTTATACAAT+GGG + chr8_3:69489881-69489900 None:intergenic 30.0%
CATTGTATAACAACAACTAC+CGG - chr8_3:69489880-69489899 Msa1305820:three_prime_UTR 30.0%
TCTGTCGATATTCTATTTAG+AGG + chr8_3:69489925-69489944 None:intergenic 30.0%
AGTGACTCAACAAGATTATT+AGG - chr8_3:69489944-69489963 Msa1305820:three_prime_UTR 30.0%
TGATGAATTATGCAGAAGAA+GGG + chr8_3:69490147-69490166 None:intergenic 30.0%
!!! AGAAAGAGTTTTGAAATGGT+TGG + chr8_3:69490177-69490196 None:intergenic 30.0%
CAAAACTCTTTCTATTTACC+GGG - chr8_3:69490184-69490203 Msa1305820:exon 30.0%
! CACTTACCTGTAATCATTTT+GGG - chr8_3:69490303-69490322 Msa1305820:CDS 30.0%
TTTAGACCCAAAATGATTAC+AGG + chr8_3:69490312-69490331 None:intergenic 30.0%
!!! TTTGCCTTGTTTTTTGGAAT+TGG - chr8_3:69490528-69490547 Msa1305820:intron 30.0%
AGATCAGAAGGTTCTTAAAA+TGG - chr8_3:69490706-69490725 Msa1305820:intron 30.0%
AGCTCAGAAACATAAATATC+TGG - chr8_3:69490731-69490750 Msa1305820:intron 30.0%
GCTCAGAAACATAAATATCT+GGG - chr8_3:69490732-69490751 Msa1305820:intron 30.0%
!! TACTACTGGACTTTGAAATT+TGG - chr8_3:69490764-69490783 Msa1305820:intron 30.0%
! TGTTTCTATGAACTTGTTTG+TGG - chr8_3:69490922-69490941 Msa1305820:CDS 30.0%
TCATTTGAACAACTAGCTAA+AGG + chr8_3:69491046-69491065 None:intergenic 30.0%
! ATGCTTAGTTTGAGCTATAT+TGG - chr8_3:69491280-69491299 Msa1305820:intron 30.0%
!! TGATGATGGCTAAATGTTAT+TGG - chr8_3:69491339-69491358 Msa1305820:CDS 30.0%
AATGTTATTGGATTCTTCTC+AGG - chr8_3:69491351-69491370 Msa1305820:CDS 30.0%
ATGTTATTGGATTCTTCTCA+GGG - chr8_3:69491352-69491371 Msa1305820:CDS 30.0%
TTCCATAGTAGACAATAAGA+TGG + chr8_3:69491510-69491529 None:intergenic 30.0%
CATGTGATGTTCCAATTAAA+AGG - chr8_3:69491563-69491582 Msa1305820:intron 30.0%
TGTGATGTTCCAATTAAAAG+GGG - chr8_3:69491565-69491584 Msa1305820:intron 30.0%
TCATCATATTGGTATGAATG+TGG + chr8_3:69491649-69491668 None:intergenic 30.0%
! CACTTCTTTATGCGTATTTT+TGG - chr8_3:69491698-69491717 Msa1305820:CDS 30.0%
! GCAAAAAGAGGCATAATTAA+CGG - chr8_3:69491738-69491757 Msa1305820:CDS 30.0%
AGAGATGAATTCACAAACAT+AGG + chr8_3:69491879-69491898 None:intergenic 30.0%
ATCTACAAGAAAAATCCAAG+AGG + chr8_3:69491956-69491975 None:intergenic 30.0%
! GATTTTTCTTGTAGATACCA+TGG - chr8_3:69491960-69491979 Msa1305820:CDS 30.0%
!! GCTGAATGAAGTATTTTTGA+AGG + chr8_3:69492115-69492134 None:intergenic 30.0%
AATTTCATTGTGCGTAAATG+TGG - chr8_3:69492171-69492190 Msa1305820:intron 30.0%
TTCATGACTATCACATCATT+TGG - chr8_3:69492280-69492299 Msa1305820:intron 30.0%
! ATCTTGTGTCATTATAACCA+CGG - chr8_3:69492321-69492340 Msa1305820:intron 30.0%
TGAAAAAGCAAAGGTTAGTA+AGG + chr8_3:69492445-69492464 None:intergenic 30.0%
GCTTTCAATTGAAAAAGCAA+AGG + chr8_3:69492454-69492473 None:intergenic 30.0%
AAAAGTAGCACCTGAAATAA+TGG + chr8_3:69492579-69492598 None:intergenic 30.0%
!! TACTTTTGCTTTTAAGAGGA+TGG - chr8_3:69492592-69492611 Msa1305820:intron 30.0%
!! CTTTTAAGAGGATGGATATT+GGG - chr8_3:69492600-69492619 Msa1305820:intron 30.0%
ACTAGTCAATCTTATCTAGT+TGG - chr8_3:69492655-69492674 Msa1305820:intron 30.0%
AGAAATGCAATGCAATTGAA+GGG + chr8_3:69492980-69492999 None:intergenic 30.0%
AAGAAATGCAATGCAATTGA+AGG + chr8_3:69492981-69493000 None:intergenic 30.0%
TTCAATTGCATTGCATTTCT+TGG - chr8_3:69492980-69492999 Msa1305820:intron 30.0%
TCAATTGCATTGCATTTCTT+GGG - chr8_3:69492981-69493000 Msa1305820:intron 30.0%
TACGAAAATTAGACTGAACT+TGG - chr8_3:69493397-69493416 Msa1305820:CDS 30.0%
AAATTAGACTGAACTTGGTT+TGG - chr8_3:69493402-69493421 Msa1305820:CDS 30.0%
TTCCATATTGAGTACTATGT+AGG - chr8_3:69493824-69493843 Msa1305820:intron 30.0%
TCCATATTGAGTACTATGTA+GGG - chr8_3:69493825-69493844 Msa1305820:intron 30.0%
! ATTCTTACCGTATTCTTTTG+TGG - chr8_3:69494065-69494084 Msa1305820:intron 30.0%
ATCTGTTTAGAAGACATACT+TGG + chr8_3:69494147-69494166 None:intergenic 30.0%
AGATATAGAAAAGACATGTC+TGG + chr8_3:69494209-69494228 None:intergenic 30.0%
! ATTTTTGTCCAACTTTTCAC+AGG - chr8_3:69494237-69494256 Msa1305820:intron 30.0%
TATCTTCCTTTATGTTGGTA+TGG - chr8_3:69494298-69494317 Msa1305820:intron 30.0%
!! AATGGAAGTTTGTTAGTGAT+AGG - chr8_3:69494339-69494358 Msa1305820:intron 30.0%
AAGTTGGATAAGAAGGATAA+GGG + chr8_3:69494650-69494669 None:intergenic 30.0%
!! TTTAGTCAAGTTGGATAAGA+AGG + chr8_3:69494657-69494676 None:intergenic 30.0%
AAGGTCACTCAATAGAAATT+TGG + chr8_3:69494722-69494741 None:intergenic 30.0%
AAGCACAAGAAATACAGAAA+AGG + chr8_3:69494741-69494760 None:intergenic 30.0%
ATTTCTTGTGCTTAATACCA+AGG - chr8_3:69494748-69494767 Msa1305820:intron 30.0%
CCAAATGATAACCTAAAATG+AGG + chr8_3:69494802-69494821 None:intergenic 30.0%
!!! CCTCATTTTAGGTTATCATT+TGG - chr8_3:69494799-69494818 Msa1305820:intron 30.0%
!!! CATTTTAGGTTATCATTTGG+TGG - chr8_3:69494802-69494821 Msa1305820:intron 30.0%
CTATAACTGATCCTATCTAT+TGG - chr8_3:69494948-69494967 Msa1305820:intron 30.0%
! AAACCTTTTTCCCAATAGAT+AGG + chr8_3:69494962-69494981 None:intergenic 30.0%
GTCAGAAACTGCAAAATTAA+TGG + chr8_3:69495146-69495165 None:intergenic 30.0%
!!! CAACAATTAGTCTTTGGTTT+TGG - chr8_3:69495307-69495326 Msa1305820:five_prime_UTR 30.0%
TTACATAATAGACAGAGAGA+TGG + chr8_3:69496027-69496046 None:intergenic 30.0%
ACACATACACAAACATGTAA+TGG + chr8_3:69496077-69496096 None:intergenic 30.0%
TGTGAACTAAAATCCATCAT+TGG + chr8_3:69496134-69496153 None:intergenic 30.0%
! GTTGTTGTTATACAATGGGT+TGG + chr8_3:69489877-69489896 None:intergenic 35.0%
! CGGTAGTTGTTGTTATACAA+TGG + chr8_3:69489882-69489901 None:intergenic 35.0%
TTAGGAGTGATAATCTTCCA+CGG - chr8_3:69489962-69489981 Msa1305820:three_prime_UTR 35.0%
AGAAAGAGAGAAAATACACG+TGG + chr8_3:69490103-69490122 None:intergenic 35.0%
GTGATGAATTATGCAGAAGA+AGG + chr8_3:69490148-69490167 None:intergenic 35.0%
!!! GTTTTGAAATGGTTGGATCA+GGG + chr8_3:69490170-69490189 None:intergenic 35.0%
!!! AGTTTTGAAATGGTTGGATC+AGG + chr8_3:69490171-69490190 None:intergenic 35.0%
CAAAGAATTCGAACAGAGAA+AGG + chr8_3:69490245-69490264 None:intergenic 35.0%
CTTTCTCTGTTCGAATTCTT+TGG - chr8_3:69490243-69490262 Msa1305820:CDS 35.0%
! GCACTTACCTGTAATCATTT+TGG - chr8_3:69490302-69490321 Msa1305820:CDS 35.0%
! ATTTAAGGGTTTTCTGTAGC+AGG - chr8_3:69490341-69490360 Msa1305820:CDS 35.0%
! TTTAAGGGTTTTCTGTAGCA+GGG - chr8_3:69490342-69490361 Msa1305820:CDS 35.0%
ACTCATACCTAGAACCTATT+TGG + chr8_3:69490572-69490591 None:intergenic 35.0%
CTGGGATTCATTATTACTAC+TGG - chr8_3:69490750-69490769 Msa1305820:intron 35.0%
!!! TCTGCTTTTGAAATTTGTGG+AGG - chr8_3:69490819-69490838 Msa1305820:intron 35.0%
!!! CTGCTTTTGAAATTTGTGGA+GGG - chr8_3:69490820-69490839 Msa1305820:intron 35.0%
! AGAAACAACAGAAGCATGAT+CGG + chr8_3:69490909-69490928 None:intergenic 35.0%
TAGACAGAGCCCATAATATT+TGG + chr8_3:69491094-69491113 None:intergenic 35.0%
TGGATTCACGTTTGATCTAA+TGG - chr8_3:69491139-69491158 Msa1305820:intron 35.0%
AAGACTTATTGATCCAATGG+TGG - chr8_3:69491163-69491182 Msa1305820:intron 35.0%
TTGTGCACCATAGAAAGAAT+TGG - chr8_3:69491221-69491240 Msa1305820:intron 35.0%
AGTTCAGCCAATTCTTTCTA+TGG + chr8_3:69491231-69491250 None:intergenic 35.0%
TGGTTTCTATTGGATGATGA+TGG - chr8_3:69491325-69491344 Msa1305820:CDS 35.0%
!!! GTAGTGATTTTGCTGTTTAG+TGG - chr8_3:69491388-69491407 Msa1305820:CDS 35.0%
! TACCCGGCATTGAATATAAT+AGG + chr8_3:69491475-69491494 None:intergenic 35.0%
ATGGTGCAAAATAACTTACC+CGG + chr8_3:69491491-69491510 None:intergenic 35.0%
CACCATCTTATTGTCTACTA+TGG - chr8_3:69491505-69491524 Msa1305820:intron 35.0%
! AAACATCCTCCCCTTTTAAT+TGG + chr8_3:69491577-69491596 None:intergenic 35.0%
AATTAAAAGGGGAGGATGTT+TGG - chr8_3:69491576-69491595 Msa1305820:intron 35.0%
ATTAACGGTTTACTCAATGG+CGG - chr8_3:69491753-69491772 Msa1305820:CDS 35.0%
TTAACTACACTTAGTCCTCT+TGG - chr8_3:69491938-69491957 Msa1305820:CDS 35.0%
!! TTTTGAAGGGGAAAACGATA+TGG + chr8_3:69492101-69492120 None:intergenic 35.0%
! ATCACATCATTTGGAGCTAT+TGG - chr8_3:69492289-69492308 Msa1305820:intron 35.0%
! TCTTGTGTCATTATAACCAC+GGG - chr8_3:69492322-69492341 Msa1305820:intron 35.0%
CTTATAAAAACCAACTGCAG+AGG - chr8_3:69492521-69492540 Msa1305820:intron 35.0%
GGCTCATATTTAAGTCAACA+TGG + chr8_3:69492558-69492577 None:intergenic 35.0%
!!! GTGCTACTTTTGCTTTTAAG+AGG - chr8_3:69492588-69492607 Msa1305820:intron 35.0%
!! GCTTTTAAGAGGATGGATAT+TGG - chr8_3:69492599-69492618 Msa1305820:intron 35.0%
!! TATAGTCTTGTATTTGGGGA+AGG - chr8_3:69492885-69492904 Msa1305820:intron 35.0%
! TGCTTGCTACAAACAAATAC+AGG + chr8_3:69493013-69493032 None:intergenic 35.0%
TTAAAAAGCTGTACATTGGC+AGG - chr8_3:69493190-69493209 Msa1305820:intron 35.0%
TACAAGAAATAGCCAGAACT+TGG + chr8_3:69493351-69493370 None:intergenic 35.0%
AAACTGTAGAGTGTAGACAT+TGG + chr8_3:69493378-69493397 None:intergenic 35.0%
AGATGTAATTCCACAAAGCT+TGG - chr8_3:69493616-69493635 Msa1305820:intron 35.0%
GATGTAATTCCACAAAGCTT+GGG - chr8_3:69493617-69493636 Msa1305820:intron 35.0%
ATGTAATTCCACAAAGCTTG+GGG - chr8_3:69493618-69493637 Msa1305820:intron 35.0%
TCCCTACATAGTACTCAATA+TGG + chr8_3:69493829-69493848 None:intergenic 35.0%
AAAGAATGCCTGTGAAAAGT+TGG + chr8_3:69494248-69494267 None:intergenic 35.0%
GATAAAGATCTCAGCAACAA+AGG + chr8_3:69494282-69494301 None:intergenic 35.0%
!! CTTCCATTTTTCAATGTCCA+GGG + chr8_3:69494327-69494346 None:intergenic 35.0%
!! ACTTCCATTTTTCAATGTCC+AGG + chr8_3:69494328-69494347 None:intergenic 35.0%
ATGTCCTAAGTTCTCTTTAC+TGG - chr8_3:69494363-69494382 Msa1305820:intron 35.0%
ATCACCAGTAAAGAGAACTT+AGG + chr8_3:69494370-69494389 None:intergenic 35.0%
! CATCTTTTCATGTCCATAGA+TGG - chr8_3:69494441-69494460 Msa1305820:intron 35.0%
CAGTTCTATCATACCATCTA+TGG + chr8_3:69494457-69494476 None:intergenic 35.0%
TTGTTGGGTCTAATACTTCT+TGG - chr8_3:69494605-69494624 Msa1305820:CDS 35.0%
! CAAGTTGGATAAGAAGGATA+AGG + chr8_3:69494651-69494670 None:intergenic 35.0%
TATCCAAAACCAAAACTCAG+TGG + chr8_3:69494888-69494907 None:intergenic 35.0%
GATCCTATCTATTGGGAAAA+AGG - chr8_3:69494956-69494975 Msa1305820:intron 35.0%
CTATTGGGAAAAAGGTTTGA+TGG - chr8_3:69494964-69494983 Msa1305820:intron 35.0%
! GTTGTTGTTGTCACAAATGA+CGG - chr8_3:69494992-69495011 Msa1305820:intron 35.0%
GTGAACTGCATCAAATAGAT+AGG + chr8_3:69495039-69495058 None:intergenic 35.0%
ATAAAATAAACCGTGCAGTG+AGG + chr8_3:69495196-69495215 None:intergenic 35.0%
!! TTCCTGCAACAATTAGTCTT+TGG - chr8_3:69495301-69495320 Msa1305820:five_prime_UTR 35.0%
AACCAAAGACTAATTGTTGC+AGG + chr8_3:69495306-69495325 None:intergenic 35.0%
! AGTGGGACAATGAATGATTT+TGG + chr8_3:69495605-69495624 None:intergenic 35.0%
TGAACGCAATGGTAATCAAT+GGG - chr8_3:69495814-69495833 Msa1305820:five_prime_UTR 35.0%
CTCAACAAAATTTCACTACG+AGG + chr8_3:69495974-69495993 None:intergenic 35.0%
TTTGAGTAGCTAGTATGAGA+TGG - chr8_3:69495997-69496016 Msa1305820:five_prime_UTR 35.0%
!! GAGAAAGTTCTGGAAGACAA+TGG + chr8_3:69490072-69490091 None:intergenic 40.0%
ATTTACCGGGAATTCGAACT+AGG - chr8_3:69490197-69490216 Msa1305820:CDS 40.0%
TTTACCGGGAATTCGAACTA+GGG - chr8_3:69490198-69490217 Msa1305820:CDS 40.0%
! CTTGTGTTGATGAGATCAGA+AGG - chr8_3:69490694-69490713 Msa1305820:intron 40.0%
!!! CTTTTGAAATTTGTGGAGGG+TGG - chr8_3:69490823-69490842 Msa1305820:intron 40.0%
TACAATCAAAAGGGCAGTGA+TGG + chr8_3:69491011-69491030 None:intergenic 40.0%
GGCAAGACTTATTGATCCAA+TGG - chr8_3:69491160-69491179 Msa1305820:intron 40.0%
!!! GTGATTTTGCTGTTTAGTGG+TGG - chr8_3:69491391-69491410 Msa1305820:CDS 40.0%
TGAATATAATAGGCGGCAGA+AGG + chr8_3:69491465-69491484 None:intergenic 40.0%
! CCGGCATTGAATATAATAGG+CGG + chr8_3:69491472-69491491 None:intergenic 40.0%
CCGCCTATTATATTCAATGC+CGG - chr8_3:69491469-69491488 Msa1305820:intron 40.0%
CGCCTATTATATTCAATGCC+GGG - chr8_3:69491470-69491489 Msa1305820:intron 40.0%
GATGTTCCAATTAAAAGGGG+AGG - chr8_3:69491568-69491587 Msa1305820:intron 40.0%
GCTCTTTACGAACCATAAAC+CGG - chr8_3:69491604-69491623 Msa1305820:intron 40.0%
!! TTCATTTAGACGCCGGTTTA+TGG + chr8_3:69491619-69491638 None:intergenic 40.0%
ACAGATCTTCATTTAGACGC+CGG + chr8_3:69491626-69491645 None:intergenic 40.0%
CAGAAAAGACTAATCTGCCA+TGG + chr8_3:69491980-69491999 None:intergenic 40.0%
! ACAGTTGATGCTCATGTCAT+GGG + chr8_3:69492052-69492071 None:intergenic 40.0%
! TACAGTTGATGCTCATGTCA+TGG + chr8_3:69492053-69492072 None:intergenic 40.0%
TTCATTGTGCGTAAATGTGG+TGG - chr8_3:69492174-69492193 Msa1305820:intron 40.0%
TCATTGTGCGTAAATGTGGT+GGG - chr8_3:69492175-69492194 Msa1305820:intron 40.0%
AACTGTGATGCATTAGTTGC+TGG + chr8_3:69492806-69492825 None:intergenic 40.0%
GACCTTATAAATGACGATGC+AGG - chr8_3:69492833-69492852 Msa1305820:CDS 40.0%
CACCTGCATCGTCATTTATA+AGG + chr8_3:69492838-69492857 None:intergenic 40.0%
TGCATTGAAAAGAACCACTG+AGG + chr8_3:69492928-69492947 None:intergenic 40.0%
ATGCAATTGAAGGGTTCAGT+TGG + chr8_3:69492971-69492990 None:intergenic 40.0%
!! GCTTGATGTGACTTGTGTTT+TGG - chr8_3:69493116-69493135 Msa1305820:CDS 40.0%
! GTACATTGGCAGGTATTTTC+TGG - chr8_3:69493200-69493219 Msa1305820:intron 40.0%
GTATGCGAATAACCAAGTTC+TGG - chr8_3:69493336-69493355 Msa1305820:intron 40.0%
AAATGAGCTCATCACTTAGC+TGG - chr8_3:69493504-69493523 Msa1305820:intron 40.0%
TGTAATTCCACAAAGCTTGG+GGG - chr8_3:69493619-69493638 Msa1305820:intron 40.0%
ACAAATACACAGAGAGACAC+GGG + chr8_3:69493792-69493811 None:intergenic 40.0%
GACAAATACACAGAGAGACA+CGG + chr8_3:69493793-69493812 None:intergenic 40.0%
GGTTGCTCTTATGATGCTAA+TGG - chr8_3:69493910-69493929 Msa1305820:intron 40.0%
ATGCAGTTAACCTATCTGAG+TGG - chr8_3:69494041-69494060 Msa1305820:intron 40.0%
ATGCCCTGGACATTGAAAAA+TGG - chr8_3:69494321-69494340 Msa1305820:intron 40.0%
CAGTCAAACCAAGTAGTACA+AGG + chr8_3:69494495-69494514 None:intergenic 40.0%
AGCTGCAAGTTCAGTATTGT+TGG - chr8_3:69494589-69494608 Msa1305820:CDS 40.0%
GCTGCAAGTTCAGTATTGTT+GGG - chr8_3:69494590-69494609 Msa1305820:CDS 40.0%
TTTCCTTCAGACAGCAAGTA+TGG - chr8_3:69494696-69494715 Msa1305820:intron 40.0%
! CTTTTGCTTCCCCTCATTTT+AGG - chr8_3:69494788-69494807 Msa1305820:intron 40.0%
!! TATGAGAGGTGCTGTTTCAA+TGG - chr8_3:69494833-69494852 Msa1305820:intron 40.0%
AATGGCACTTGCGTATAATC+AGG - chr8_3:69494851-69494870 Msa1305820:intron 40.0%
!!! GTACCACTGAGTTTTGGTTT+TGG - chr8_3:69494882-69494901 Msa1305820:intron 40.0%
TTATTGTTTGGCTGAAGCAG+TGG + chr8_3:69494924-69494943 None:intergenic 40.0%
TTTGATGCAGTTCACCATGT+CGG - chr8_3:69495044-69495063 Msa1305820:CDS 40.0%
! ATTAGTTTCTCCTCACTGCA+CGG - chr8_3:69495183-69495202 Msa1305820:five_prime_UTR 40.0%
!! GGTTTTGGTCCATGAAATGT+AGG - chr8_3:69495322-69495341 Msa1305820:five_prime_UTR 40.0%
!!! CTGCTTGTGATTTTAGGATG+AGG + chr8_3:69495557-69495576 None:intergenic 40.0%
!! GTCATGCTGCTTGTGATTTT+AGG + chr8_3:69495563-69495582 None:intergenic 40.0%
!!! TTTTGGAGTAGTCGATTCTG+TGG + chr8_3:69495588-69495607 None:intergenic 40.0%
TCATTCATTGTCCCACTTCT+AGG - chr8_3:69495608-69495627 Msa1305820:intron 40.0%
AAGATCAGCTTCAGAATCTC+GGG + chr8_3:69495639-69495658 None:intergenic 40.0%
CAAGATCAGCTTCAGAATCT+CGG + chr8_3:69495640-69495659 None:intergenic 40.0%
!! GATTCTGAAGCTGATCTTGA+AGG - chr8_3:69495641-69495660 Msa1305820:intron 40.0%
!! GAGTTGATAGTAAAGCACGA+AGG + chr8_3:69495691-69495710 None:intergenic 40.0%
AATCGATGAACAGTGTGAGT+TGG + chr8_3:69495713-69495732 None:intergenic 40.0%
! CTCACACTGTTCATCGATTA+TGG - chr8_3:69495714-69495733 Msa1305820:intron 40.0%
! TCATTCATGCGTCCTGTTTT+TGG - chr8_3:69495752-69495771 Msa1305820:five_prime_UTR 40.0%
TGATTACCATTGCGTTCACT+TGG + chr8_3:69495812-69495831 None:intergenic 40.0%
GTGAACGCAATGGTAATCAA+TGG - chr8_3:69495813-69495832 Msa1305820:five_prime_UTR 40.0%
GAACGCAATGGTAATCAATG+GGG - chr8_3:69495815-69495834 Msa1305820:five_prime_UTR 40.0%
CTATCTACACTCTCCAATGA+TGG - chr8_3:69496118-69496137 Msa1305820:five_prime_UTR 40.0%
!!! TGTTTGTTTTTGAGCTGCCG+TGG + chr8_3:69489982-69490001 None:intergenic 45.0%
! AGCAACGCGTGATGATGAAT+CGG + chr8_3:69490009-69490028 None:intergenic 45.0%
GGAGAGAGATGAGAAAGTTC+TGG + chr8_3:69490082-69490101 None:intergenic 45.0%
CAATCCCTAGTTCGAATTCC+CGG + chr8_3:69490205-69490224 None:intergenic 45.0%
! AACAGAAGCATGATCGGAAG+TGG + chr8_3:69490903-69490922 None:intergenic 45.0%
CTGTGTGCTTGTATTGTCCT+TGG - chr8_3:69490950-69490969 Msa1305820:CDS 45.0%
ATCTTCTCGAGGAGAATCGA+TGG - chr8_3:69490975-69490994 Msa1305820:intron 45.0%
CGCAAGTATGTTGTCTACAC+TGG - chr8_3:69491119-69491138 Msa1305820:intron 45.0%
! CACAAGCTTGTTTCCACCAT+TGG + chr8_3:69491179-69491198 None:intergenic 45.0%
! TCTTCTCAGGGTATTTGCAC+TGG - chr8_3:69491364-69491383 Msa1305820:CDS 45.0%
!! CTCAATGGCGGAGAAGTTTT+TGG - chr8_3:69491765-69491784 Msa1305820:intron 45.0%
TAGACATGTTCCTCTGCAGT+TGG + chr8_3:69492534-69492553 None:intergenic 45.0%
GATATTGGGCCACTGGAAAT+CGG - chr8_3:69492614-69492633 Msa1305820:intron 45.0%
!! AGATAATCGCCGATTTCCAG+TGG + chr8_3:69492626-69492645 None:intergenic 45.0%
CTGGAAATCGGCGATTATCT+AGG - chr8_3:69492626-69492645 Msa1305820:intron 45.0%
TGTGCAAACAGAGTCTGTTG+CGG + chr8_3:69492746-69492765 None:intergenic 45.0%
AGACTCTGTTTGCACATTGC+AGG - chr8_3:69492750-69492769 Msa1305820:intron 45.0%
TGTGAATGATGCTACCTCAG+TGG - chr8_3:69492911-69492930 Msa1305820:intron 45.0%
TTTGTAGCAAGCACACTCCT+TGG - chr8_3:69493020-69493039 Msa1305820:CDS 45.0%
!! TGAGAGTGCTAGACAGAGAA+AGG + chr8_3:69493060-69493079 None:intergenic 45.0%
ATTTCTATCACCTCGCAGAC+AGG - chr8_3:69493147-69493166 Msa1305820:CDS 45.0%
!! CTATCATTCTGGCTTGAAGC+AGG + chr8_3:69493459-69493478 None:intergenic 45.0%
CTGCTTCAAGCCAGAATGAT+AGG - chr8_3:69493457-69493476 Msa1305820:intron 45.0%
GGTAAGAATGCCACTCAGAT+AGG + chr8_3:69494054-69494073 None:intergenic 45.0%
GATCTCAGCAACAAAGGACA+AGG + chr8_3:69494276-69494295 None:intergenic 45.0%
GGGCATCCATACCAACATAA+AGG + chr8_3:69494307-69494326 None:intergenic 45.0%
TTATGTTGGTATGGATGCCC+TGG - chr8_3:69494307-69494326 Msa1305820:intron 45.0%
GAAGCAGTCCTTGTACTACT+TGG - chr8_3:69494484-69494503 Msa1305820:intron 45.0%
TCCTATTCTTGTGCCACACT+TGG - chr8_3:69494539-69494558 Msa1305820:intron 45.0%
ACCAAGTGTGGCACAAGAAT+AGG + chr8_3:69494543-69494562 None:intergenic 45.0%
CTATAGATGTTCCAGGACTG+CGG + chr8_3:69494571-69494590 None:intergenic 45.0%
CTTGCAGCTATAGATGTTCC+AGG + chr8_3:69494578-69494597 None:intergenic 45.0%
AGACACTTGTCAGCATACCT+TGG + chr8_3:69494768-69494787 None:intergenic 45.0%
! TAGGTTATCATTTGGTGGGC+TGG - chr8_3:69494807-69494826 Msa1305820:intron 45.0%
! TGAGCAGTACCACTGAGTTT+TGG - chr8_3:69494876-69494895 Msa1305820:intron 45.0%
TTGATGCAGTTCACCATGTC+GGG - chr8_3:69495045-69495064 Msa1305820:CDS 45.0%
GCTGAAAAGGACAACAGTGA+TGG + chr8_3:69495112-69495131 None:intergenic 45.0%
! TGTTGTCCTTTTCAGCACAG+TGG - chr8_3:69495116-69495135 Msa1305820:CDS 45.0%
GTGCAGTGAGGAGAAACTAA+TGG + chr8_3:69495184-69495203 None:intergenic 45.0%
! TGCTGACTAAGCCACTCATA+AGG - chr8_3:69495522-69495541 Msa1305820:intron 45.0%
! GGTAGTAGAAGCCTTATGAG+TGG + chr8_3:69495536-69495555 None:intergenic 45.0%
TGTTCGGTCGGTGAATTTCA+TGG + chr8_3:69495667-69495686 None:intergenic 45.0%
AGTAAAGCACGAAGGCTGTT+CGG + chr8_3:69495683-69495702 None:intergenic 45.0%
!!! TTCATGCGTCCTGTTTTTGG+TGG - chr8_3:69495755-69495774 Msa1305820:five_prime_UTR 45.0%
AAACCTCTGCCACCAAAAAC+AGG + chr8_3:69495767-69495786 None:intergenic 45.0%
!!! GGTTTTGTTCCTGTAGAACC+TGG - chr8_3:69495782-69495801 Msa1305820:five_prime_UTR 45.0%
!!! TCTAAAATATAATATATTTA+AGG - chr8_3:69490326-69490345 Msa1305820:CDS 5.0%
!! CTAAAATATAATATATTTAA+GGG - chr8_3:69490327-69490346 Msa1305820:CDS 5.0%
!!! ATTTATATTTATACATTTTA+AGG - chr8_3:69490447-69490466 Msa1305820:CDS 5.0%
!! AAAAAAAAAATTAAGAAAAA+AGG + chr8_3:69490505-69490524 None:intergenic 5.0%
TGTCCTTGGTCATCTTCTCG+AGG - chr8_3:69490964-69490983 Msa1305820:intron 50.0%
TCTCCTCGAGAAGATGACCA+AGG + chr8_3:69490970-69490989 None:intergenic 50.0%
GGTGGAAACAAGCTTGTGCA+TGG - chr8_3:69491181-69491200 Msa1305820:CDS 50.0%
AAAGAGGTAAGACGTACCCG+TGG + chr8_3:69492341-69492360 None:intergenic 50.0%
GACGATGCAGGTGCTAAATC+AGG - chr8_3:69492845-69492864 Msa1305820:CDS 50.0%
AGGCATTTACCACAACGCCA+AGG + chr8_3:69493040-69493059 None:intergenic 50.0%
AATCGTTCCCCCAAGCTTTG+TGG + chr8_3:69493629-69493648 None:intergenic 50.0%
CGACAAGAGTTCAGGAGAGT+GGG + chr8_3:69493681-69493700 None:intergenic 50.0%
CCACTCTCCTGAACTCTTGT+CGG - chr8_3:69493679-69493698 Msa1305820:intron 50.0%
CACTCTCCTGAACTCTTGTC+GGG - chr8_3:69493680-69493699 Msa1305820:intron 50.0%
TTCACACCCGACAAGAGTTC+AGG + chr8_3:69493689-69493708 None:intergenic 50.0%
AAGAGCAACCTCACGATCTG+TGG + chr8_3:69493900-69493919 None:intergenic 50.0%
GGCATACCTCTCCTATATGC+TGG - chr8_3:69493931-69493950 Msa1305820:intron 50.0%
! TCCTATATGCTGGCTGAGGT+AGG - chr8_3:69493941-69493960 Msa1305820:intron 50.0%
ACCTACCTCAGCCAGCATAT+AGG + chr8_3:69493945-69493964 None:intergenic 50.0%
ACTGCGGAAGAAACCAAGTG+TGG + chr8_3:69494555-69494574 None:intergenic 50.0%
!! TGGCCATACTTGCTGTCTGA+AGG + chr8_3:69494702-69494721 None:intergenic 50.0%
TGATGCAGTTCACCATGTCG+GGG - chr8_3:69495046-69495065 Msa1305820:CDS 50.0%
TAGTTGAGTATGCCCCGACA+TGG + chr8_3:69495061-69495080 None:intergenic 50.0%
! AAGGACAACAGTGATGGTGC+TGG + chr8_3:69495106-69495125 None:intergenic 50.0%
GGCTTACCACTGTGCTGAAA+AGG + chr8_3:69495125-69495144 None:intergenic 50.0%
CTCGGGAATCTCCTAGAAGT+GGG + chr8_3:69495622-69495641 None:intergenic 50.0%
TCTCGGGAATCTCCTAGAAG+TGG + chr8_3:69495623-69495642 None:intergenic 50.0%
TCATCATCACGCGTTGCTCG+AGG - chr8_3:69490011-69490030 Msa1305820:three_prime_UTR 55.0%
GAGGATGGATATTGGGCCAC+TGG - chr8_3:69492607-69492626 Msa1305820:intron 55.0%
AAGCACACTCCTTGGCGTTG+TGG - chr8_3:69493028-69493047 Msa1305820:CDS 55.0%
CCGACAAGAGTTCAGGAGAG+TGG + chr8_3:69493682-69493701 None:intergenic 55.0%
! CTGTGGAGTGCCTGGAATGA+AGG + chr8_3:69493883-69493902 None:intergenic 55.0%
CCTCAGCCAGCATATAGGAG+AGG + chr8_3:69493940-69493959 None:intergenic 55.0%
! CCTCTCCTATATGCTGGCTG+AGG - chr8_3:69493937-69493956 Msa1305820:intron 55.0%
CTTGGTTTCTTCCGCAGTCC+TGG - chr8_3:69494557-69494576 Msa1305820:CDS 55.0%
!! TGGTGGGCTGGTCTTATGAG+AGG - chr8_3:69494819-69494838 Msa1305820:intron 55.0%
AAGCACGAAGGCTGTTCGGT+CGG + chr8_3:69495679-69495698 None:intergenic 55.0%
!!! CGTCCTGTTTTTGGTGGCAG+AGG - chr8_3:69495761-69495780 Msa1305820:five_prime_UTR 55.0%
CTTGGTGAGCCAGGTTCTAC+AGG + chr8_3:69495794-69495813 None:intergenic 55.0%
! TTGCGTTCACTTGGTGAGCC+AGG + chr8_3:69495803-69495822 None:intergenic 55.0%
GGCTCACCAAGTGAACGCAA+TGG - chr8_3:69495803-69495822 Msa1305820:five_prime_UTR 55.0%
GTGGAGGGTGGACGACATCA+TGG - chr8_3:69490835-69490854 Msa1305820:intron 60.0%
ACTGAGCAGACCTGTCTGCG+AGG + chr8_3:69493160-69493179 None:intergenic 60.0%
! CTCACGATCTGTGGAGTGCC+TGG + chr8_3:69493891-69493910 None:intergenic 60.0%
CAGGCACTCCACAGATCGTG+AGG - chr8_3:69493889-69493908 Msa1305820:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 69489871 69496165 69489871 ID=Msa1305820;Name=Msa1305820
chr8_3 mRNA 69489871 69496165 69489871 ID=Msa1305820-mRNA-1;Parent=Msa1305820;Name=Msa1305820-mRNA-1;_AED=0.08;_eAED=0.08;_QI=592|1|1|1|0.92|0.86|15|324|541
chr8_3 exon 69489871 69490524 69489871 ID=Msa1305820-mRNA-1:exon:21542;Parent=Msa1305820-mRNA-1
chr8_3 exon 69490899 69490982 69490899 ID=Msa1305820-mRNA-1:exon:21541;Parent=Msa1305820-mRNA-1
chr8_3 exon 69491164 69491226 69491164 ID=Msa1305820-mRNA-1:exon:21540;Parent=Msa1305820-mRNA-1
chr8_3 exon 69491324 69491462 69491324 ID=Msa1305820-mRNA-1:exon:21539;Parent=Msa1305820-mRNA-1
chr8_3 exon 69491676 69491777 69491676 ID=Msa1305820-mRNA-1:exon:21538;Parent=Msa1305820-mRNA-1
chr8_3 exon 69491889 69491989 69491889 ID=Msa1305820-mRNA-1:exon:21537;Parent=Msa1305820-mRNA-1
chr8_3 exon 69492078 69492144 69492078 ID=Msa1305820-mRNA-1:exon:21536;Parent=Msa1305820-mRNA-1
chr8_3 exon 69492825 69492871 69492825 ID=Msa1305820-mRNA-1:exon:21535;Parent=Msa1305820-mRNA-1
chr8_3 exon 69492987 69493181 69492987 ID=Msa1305820-mRNA-1:exon:21534;Parent=Msa1305820-mRNA-1
chr8_3 exon 69493265 69493311 69493265 ID=Msa1305820-mRNA-1:exon:21533;Parent=Msa1305820-mRNA-1
chr8_3 exon 69493389 69493448 69493389 ID=Msa1305820-mRNA-1:exon:21532;Parent=Msa1305820-mRNA-1
chr8_3 exon 69493693 69493790 69493693 ID=Msa1305820-mRNA-1:exon:21531;Parent=Msa1305820-mRNA-1
chr8_3 exon 69494545 69494663 69494545 ID=Msa1305820-mRNA-1:exon:21530;Parent=Msa1305820-mRNA-1
chr8_3 exon 69495009 69495347 69495009 ID=Msa1305820-mRNA-1:exon:21529;Parent=Msa1305820-mRNA-1
chr8_3 exon 69495739 69496165 69495739 ID=Msa1305820-mRNA-1:exon:21528;Parent=Msa1305820-mRNA-1
chr8_3 five_prime_UTR 69495739 69496165 69495739 ID=Msa1305820-mRNA-1:five_prime_utr;Parent=Msa1305820-mRNA-1
chr8_3 five_prime_UTR 69495183 69495347 69495183 ID=Msa1305820-mRNA-1:five_prime_utr;Parent=Msa1305820-mRNA-1
chr8_3 CDS 69495009 69495182 69495009 ID=Msa1305820-mRNA-1:cds;Parent=Msa1305820-mRNA-1
chr8_3 CDS 69494545 69494663 69494545 ID=Msa1305820-mRNA-1:cds;Parent=Msa1305820-mRNA-1
chr8_3 CDS 69493693 69493790 69493693 ID=Msa1305820-mRNA-1:cds;Parent=Msa1305820-mRNA-1
chr8_3 CDS 69493389 69493448 69493389 ID=Msa1305820-mRNA-1:cds;Parent=Msa1305820-mRNA-1
chr8_3 CDS 69493265 69493311 69493265 ID=Msa1305820-mRNA-1:cds;Parent=Msa1305820-mRNA-1
chr8_3 CDS 69492987 69493181 69492987 ID=Msa1305820-mRNA-1:cds;Parent=Msa1305820-mRNA-1
chr8_3 CDS 69492825 69492871 69492825 ID=Msa1305820-mRNA-1:cds;Parent=Msa1305820-mRNA-1
chr8_3 CDS 69492078 69492144 69492078 ID=Msa1305820-mRNA-1:cds;Parent=Msa1305820-mRNA-1
chr8_3 CDS 69491889 69491989 69491889 ID=Msa1305820-mRNA-1:cds;Parent=Msa1305820-mRNA-1
chr8_3 CDS 69491676 69491777 69491676 ID=Msa1305820-mRNA-1:cds;Parent=Msa1305820-mRNA-1
chr8_3 CDS 69491324 69491462 69491324 ID=Msa1305820-mRNA-1:cds;Parent=Msa1305820-mRNA-1
chr8_3 CDS 69491164 69491226 69491164 ID=Msa1305820-mRNA-1:cds;Parent=Msa1305820-mRNA-1
chr8_3 CDS 69490899 69490982 69490899 ID=Msa1305820-mRNA-1:cds;Parent=Msa1305820-mRNA-1
chr8_3 CDS 69490195 69490524 69490195 ID=Msa1305820-mRNA-1:cds;Parent=Msa1305820-mRNA-1
chr8_3 three_prime_UTR 69489871 69490194 69489871 ID=Msa1305820-mRNA-1:three_prime_utr;Parent=Msa1305820-mRNA-1
Gene Sequence

>Msa1305820

ATGGCTATTGAAATGACTTCTATTGTTTCAAAACTATCAATGTTATCCACTTCCGATCATGCTTCTGTTGTTTCTATGAACTTGTTTGTGGCACTTCTGTGTGCTTGTATTGTCCTTGGTCATCTTCTCGAGGAGAATCGATGGATGAATGAATCCATCACTGCCCTTTTGATTGGTATTTGCACTGGTGTAGTGATTTTGCTGTTTAGTGGTGGAAAAAGTTCGCATATTCTTGTTTTCAGTGAAGATCTTTTCTTTATATACCTTCTGCCGCCTATTATATTCAATGCCGGGTTTCAAGTAAAGAAAAAGCAGTTTTTTGTCAACTTCATGACTATCACATCATTTGGAGCTATTGGCACATTAATATCTTGTGTCATTATAACCACGGGTGCTACTTTTGCTTTTAAGAGGATGGATATTGGGCCACTGGAAATCGGCGATTATCTAGCTATTGGAGCAATATTTGCCGCAACAGACTCTGTTTGCACATTGCAGGTGCTAAATCAGGATGAGACACCTTTATTGTATAGTCTTGTATTTGGGGAAGGTGTTGTGAATGATGCTACCTCAGTGGTTCTTTTCAATGCAATTCAAAGCTTTGATCTTAACCAACTGAACCCTTCAATTGCATTGCATTTCTTGGGCAACTTCCTGTATTTGTTTGTAGCAAGCACACTCCTTGGCGTTGTGACAGGTCTGCTCAGTGCTTATGTTATTAAAAAGCTGTACATTGGCAGGCACTCCACAGATCGTGAGGTTGCTCTTATGATGCTAATGGCATACCTCTCCTATATGCTGGCTGAGTTAACCTATCTGAGTGGCATTCTTACCGTATTCTTTTGTGGTATTGTTATGTCTCATTATACTTGGCATAATGTGACGCAGAGTTCAAGAATCACTACCAAGCATTCTTTTGCTACCTTGTCCTTTGTTGCTGAGATCTTTATCTTCCTTTATGTTGGTATGGATGCCCTGGACATTGAAAAATGGAAGTTTGTTAGTGATAGTCCTGGAACATCTATAGCTGCAAGTTCAGTATTGTTGGGTCTAATACTTCTTGGAAGAGCAGCGTTTGTTTTTCCCTTATCCTTCTTATCCAACTTGACTAAAAAATCACAACATCAGAAGATTTCCTTCAGACAGCAAGTTATCATTTGGTGGGCTGGTCTTATGAGAGGTGCTGTTTCAATGGCACTTGCGTATAATCAGTTCACCATGTCGGGGCATACTCAACTACGTAGCAATGCAATCATGATAACCAGCACCATCACTGTTGTCCTTTTCAGCACAGTGGTGTTTGGTTTGCTGACTAAGCCACTCATAAGGCTTCTACTACCTCATCCTAAAATCACAAGCAGCATGACAACCACAGAATCGACTACTCCAAAATCATTCATTGTCCCACTTCTAGGAGATTCCCGAGATTCTGAAGCTGATCTTGAAGGCCATGAAATTCACCGACCGAACAGCCTTCGTGCTTTACTATCAACTCCAACTCACACTGTTCATCGATTATGGCGAAAGTTTGATGATTCATTCATGCGTCCTGTTTTTGGTGGCAGAGGTTTTGTTCCTGTAGAACCTGGCTCACCAAGTGAACGCAATGGTAATCAATGGGGTTGA

Protein sequence

>Msa1305820

MAIEMTSIVSKLSMLSTSDHASVVSMNLFVALLCACIVLGHLLEENRWMNESITALLIGICTGVVILLFSGGKSSHILVFSEDLFFIYLLPPIIFNAGFQVKKKQFFVNFMTITSFGAIGTLISCVIITTGATFAFKRMDIGPLEIGDYLAIGAIFAATDSVCTLQVLNQDETPLLYSLVFGEGVVNDATSVVLFNAIQSFDLNQLNPSIALHFLGNFLYLFVASTLLGVVTGLLSAYVIKKLYIGRHSTDREVALMMLMAYLSYMLAELTYLSGILTVFFCGIVMSHYTWHNVTQSSRITTKHSFATLSFVAEIFIFLYVGMDALDIEKWKFVSDSPGTSIAASSVLLGLILLGRAAFVFPLSFLSNLTKKSQHQKISFRQQVIIWWAGLMRGAVSMALAYNQFTMSGHTQLRSNAIMITSTITVVLFSTVVFGLLTKPLIRLLLPHPKITSSMTTTESTTPKSFIVPLLGDSRDSEADLEGHEIHRPNSLRALLSTPTHTVHRLWRKFDDSFMRPVFGGRGFVPVEPGSPSERNGNQWG*