AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1310720


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1310720 MtrunA17_Chr8g0337941 95.079 508 25 0 13 520 13 520 0.0 999
Msa1310720 MtrunA17_Chr8g0337931 78.831 496 97 3 30 520 15 507 0.0 801
Msa1310720 MtrunA17_Chr3g0145831 68.147 518 142 7 12 519 12 516 0.0 690
Msa1310720 MtrunA17_Chr2g0291441 53.187 455 186 6 6 460 2 429 8.72e-158 457
Msa1310720 MtrunA17_Chr3g0144171 43.952 496 253 9 4 496 3 476 3.01e-130 390
Msa1310720 MtrunA17_Chr2g0326301 42.443 483 252 6 11 482 7 474 4.86e-127 383
Msa1310720 MtrunA17_Chr8g0370181 43.763 473 245 5 1 473 27 478 4.21e-126 380
Msa1310720 MtrunA17_Chr5g0407381 42.240 509 260 7 5 503 14 498 9.36e-126 379
Msa1310720 MtrunA17_Chr6g0462051 41.736 484 264 9 14 493 11 480 1.51e-123 374
Msa1310720 MtrunA17_Chr2g0317801 42.251 471 247 8 9 477 6 453 6.68e-118 358
Msa1310720 MtrunA17_Chr3g0144201 38.667 525 273 8 10 492 9 526 6.08e-112 343
Msa1310720 MtrunA17_Chr4g0040611 35.590 517 285 11 6 517 2 475 6.08e-104 323
Msa1310720 MtrunA17_Chr2g0277471 36.326 479 276 7 9 482 6 460 5.21e-89 283
Msa1310720 MtrunA17_Chr5g0405641 34.509 397 237 11 9 400 7 385 2.31e-53 185
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1310720 AT4G02600.2 64.498 538 157 8 1 517 1 525 0.0 695
Msa1310720 AT4G02600.1 64.498 538 157 8 1 517 1 525 0.0 695
Msa1310720 AT2G44110.1 55.728 515 202 8 8 520 2 492 0.0 576
Msa1310720 AT2G44110.2 55.728 515 203 8 8 520 2 493 0.0 575
Msa1310720 AT4G24250.1 54.637 496 197 7 6 496 2 474 6.25e-176 504
Msa1310720 AT4G24250.2 55.529 425 161 7 6 425 2 403 4.28e-148 431
Msa1310720 AT2G39200.1 42.363 491 263 6 14 497 8 485 6.77e-129 387
Msa1310720 AT2G33670.1 44.372 462 231 5 13 474 16 451 1.32e-128 384
Msa1310720 AT1G61560.1 39.847 522 284 8 14 518 10 518 4.99e-127 383
Msa1310720 AT1G61560.4 40.076 524 280 10 14 518 10 518 5.29e-126 380
Msa1310720 AT2G17430.1 42.380 479 240 7 3 474 18 467 1.14e-124 375
Msa1310720 AT1G11310.1 42.540 496 263 9 14 497 10 495 1.24e-124 377
Msa1310720 AT1G42560.1 44.156 462 232 7 17 474 19 458 3.89e-121 363
Msa1310720 AT2G17480.1 40.840 524 266 8 14 517 41 540 8.39e-120 365
Msa1310720 AT1G61560.10 42.539 449 237 6 14 454 10 445 1.48e-118 357
Msa1310720 AT5G53760.2 42.213 488 258 9 1 480 1 472 6.02e-118 359
Msa1310720 AT5G53760.1 42.213 488 258 9 1 480 1 472 6.02e-118 359
Msa1310720 AT1G26700.1 41.909 482 255 9 7 480 3 467 1.77e-117 357
Msa1310720 AT1G26700.2 41.909 482 255 9 7 480 3 467 1.77e-117 357
Msa1310720 AT5G65970.1 42.117 463 234 6 4 466 28 456 2.52e-114 350
Msa1310720 AT3G45290.1 38.542 480 263 5 5 484 10 457 3.86e-112 342
Msa1310720 AT1G61560.2 38.806 469 257 8 67 518 1 456 6.59e-107 329
Msa1310720 AT1G61560.3 38.806 469 257 8 67 518 1 456 6.59e-107 329
Msa1310720 AT1G61560.7 41.527 419 225 5 14 425 10 415 3.90e-106 323
Msa1310720 AT1G61560.9 41.527 419 225 5 14 425 10 415 3.90e-106 323
Msa1310720 AT1G11310.3 41.761 443 236 9 67 497 1 433 1.57e-105 325
Msa1310720 AT1G61560.6 42.365 406 212 6 14 412 10 400 8.69e-105 320
Msa1310720 AT1G61560.8 42.365 406 212 6 14 412 10 400 8.69e-105 320
Msa1310720 AT1G61560.5 42.365 406 212 6 14 412 10 400 8.69e-105 320
Msa1310720 AT1G11310.2 42.482 419 224 7 14 425 10 418 1.21e-104 320
Msa1310720 AT1G11000.1 36.076 474 267 5 9 474 6 451 1.90e-88 283
Msa1310720 AT1G11000.3 36.076 474 267 5 9 474 6 451 1.90e-88 283
Msa1310720 AT1G42560.2 41.146 384 200 6 17 396 19 380 7.65e-86 270
Msa1310720 AT5G65970.2 40.800 375 188 6 4 378 28 368 8.70e-84 268
Msa1310720 AT1G11000.2 35.765 425 237 5 9 425 6 402 1.38e-72 237

Find 88 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTAACTGTAACACAAAA+TGG 0.132671 8_4:-7348672 Msa1310720:CDS
ATGCTATCTCAAAAGAATTT+TGG 0.172414 8_4:+7346637 None:intergenic
AAGCCTTGGAATAATGTATT+TGG 0.186338 8_4:+7346460 None:intergenic
TTATGCAGAGTTGATGATTT+TGG 0.195716 8_4:-7348709 Msa1310720:intron
ATGGTTGCAGTTGGTATCTT+TGG 0.224025 8_4:-7347355 Msa1310720:intron
CAAGTACAAACACGACTTAT+TGG 0.251745 8_4:-7346141 Msa1310720:CDS
TGGCTATAAATCATGTATAA+TGG 0.276113 8_4:-7346489 Msa1310720:CDS
GGCACTGCTAGGCGCCTTCT+AGG 0.278687 8_4:-7348510 Msa1310720:CDS
ATTAAGGCTTGGTTTCATTA+AGG 0.279842 8_4:-7347676 Msa1310720:intron
CATTATTCCAAGGCTTGTTA+TGG 0.285473 8_4:-7346453 Msa1310720:CDS
TGGGAAAGATTCTGCTATAA+TGG 0.288863 8_4:-7347840 Msa1310720:CDS
TCATCCAAAGGTGAAGAAAT+TGG 0.289923 8_4:-7348471 Msa1310720:CDS
AGGCTTCAAAGAGTGGTTTC+TGG 0.304493 8_4:+7348849 None:intergenic
TCAAGAAAGTTGTTGGTATT+AGG 0.310088 8_4:-7347508 Msa1310720:intron
GTATCCAATTTCTTCACCTT+TGG 0.311680 8_4:+7348467 None:intergenic
AACAACTAATTCACCTTGTA+TGG 0.320206 8_4:+7346731 None:intergenic
GGGAAAGATTCTGCTATAAT+GGG 0.325346 8_4:-7347839 Msa1310720:CDS
TTGTACTTGATCGTCGAATA+TGG 0.329062 8_4:+7346155 None:intergenic
AGTTGGACTATGTGACATTA+AGG 0.334578 8_4:-7347692 Msa1310720:CDS
TTAATTTACCTTGTGATTGA+TGG 0.340185 8_4:+7348014 None:intergenic
GGCTATAAATCATGTATAAT+GGG 0.355523 8_4:-7346488 Msa1310720:CDS
CACCATTATGAGAACTTCCT+TGG 0.355982 8_4:+7346064 None:intergenic
GAACGTTCTCTTCATTATCT+TGG 0.368049 8_4:-7348893 Msa1310720:CDS
GATGATTTCAAGAAAGTTGT+TGG 0.369692 8_4:-7347515 Msa1310720:CDS
AGATTCGTCGGTGGAAGCGC+TGG 0.380741 8_4:-7348063 Msa1310720:CDS
ATTATTCCAAGGCTTGTTAT+GGG 0.386543 8_4:-7346452 Msa1310720:CDS
GATCGTGATCGTCACCTAGA+AGG 0.405673 8_4:+7348496 None:intergenic
GCAAAGAAGAAAGGATTAAG+AGG 0.413779 8_4:-7346105 Msa1310720:CDS
AACCATCAGATGATCACTTC+TGG 0.416963 8_4:-7346707 Msa1310720:CDS
CTTAAGCTTCTTCTTGCTGT+GGG 0.424296 8_4:-7346813 Msa1310720:intron
TACTTGTGAAAATTAAACTT+TGG 0.435190 8_4:+7347557 None:intergenic
TTGGTATCTTTGGATCTTTG+TGG 0.439724 8_4:-7347345 Msa1310720:CDS
TGTGTAACAATTGCATATAA+TGG 0.443851 8_4:+7346302 None:intergenic
ACTTATTGGTTGGGCACAAA+AGG 0.448832 8_4:-7346127 Msa1310720:CDS
TTCTAACTGTAACACAAAAT+GGG 0.451535 8_4:-7348671 Msa1310720:CDS
TACAAACACGACTTATTGGT+TGG 0.457492 8_4:-7346137 Msa1310720:CDS
GTCACCGTATCCGTTCGTTC+TGG 0.462789 8_4:+7347908 None:intergenic
TCTTAAGCTTCTTCTTGCTG+TGG 0.475997 8_4:-7346814 Msa1310720:intron
GTCCAAGGAAGTTCTCATAA+TGG 0.479254 8_4:-7346066 Msa1310720:CDS
ATTTGCAATTTACACCTACA+TGG 0.479370 8_4:-7348964 Msa1310720:CDS
GCTTCCTTGTAGTCTTAAAG+AGG 0.480638 8_4:-7348607 Msa1310720:CDS
AAATTTGTGCTCCAAGAGAA+TGG 0.480671 8_4:-7348641 Msa1310720:CDS
TGTGTATCTTAGATAACATA+TGG 0.489266 8_4:-7346509 Msa1310720:intron
TTATGGATCTGTGACAAAGT+TGG 0.492609 8_4:-7347709 Msa1310720:CDS
TTCTCTTCATTATCTTGGCA+AGG 0.493187 8_4:-7348888 Msa1310720:CDS
TAACAATTGCATATAATGGT+AGG 0.495285 8_4:+7346306 None:intergenic
TTCTGCTATAATGGGGTGGT+TGG 0.507298 8_4:-7347831 Msa1310720:intron
GAGAACTTCCTTGGACAGAA+TGG 0.508131 8_4:+7346073 None:intergenic
GACTATGTGACATTAAGGCT+TGG 0.511293 8_4:-7347687 Msa1310720:CDS
TGCAACATGGGTCATGGTGG+AGG 0.522794 8_4:-7349007 None:intergenic
GATTCGTCGGTGGAAGCGCT+GGG 0.523542 8_4:-7348062 Msa1310720:CDS
TAATGCAGCGCCAGAACGAA+CGG 0.528204 8_4:-7347918 Msa1310720:intron
ATATGAATAGTCCATTCTCT+TGG 0.528672 8_4:+7348630 None:intergenic
GGAAGTACTAACGTTCAGCT+AGG 0.531495 8_4:-7346042 Msa1310720:CDS
ACAAACACGACTTATTGGTT+GGG 0.532061 8_4:-7346136 Msa1310720:CDS
ATGAAGATACTTACAATGAC+AGG 0.540056 8_4:+7346949 None:intergenic
GCACAAAAGGCAAAGAAGAA+AGG 0.540578 8_4:-7346114 Msa1310720:CDS
TCGTCCTCTTTAAGACTACA+AGG 0.541149 8_4:+7348603 None:intergenic
AAACCAAATACATTATTCCA+AGG 0.542744 8_4:-7346463 Msa1310720:CDS
TGAAATCATCTTCAAGTGCA+CGG 0.542872 8_4:+7347528 None:intergenic
AGCTAGGGTCAATGTTCAGA+AGG 0.544634 8_4:-7346026 Msa1310720:CDS
AGTTACCCCATAACAAGCCT+TGG 0.548441 8_4:+7346446 None:intergenic
AGCGCCAGAACGAACGGATA+CGG 0.549065 8_4:-7347912 Msa1310720:CDS
GGTGGAGGAGAAGCTGAAGA+AGG 0.568786 8_4:-7348992 Msa1310720:CDS
CACAACTGCAACATGGGTCA+TGG 0.569291 8_4:-7349013 None:intergenic
GAAAAGCATTCAGCCATACA+AGG 0.571272 8_4:-7346744 Msa1310720:CDS
ATTATATGCAATTGTTACAC+AGG 0.579900 8_4:-7346300 Msa1310720:intron
AAGAGAACGTTCCACAGCGA+AGG 0.580982 8_4:+7348904 None:intergenic
GATAGCAACCATTCTGTCCA+AGG 0.585088 8_4:-7346081 Msa1310720:CDS
AACAATTGCATATAATGGTA+GGG 0.585156 8_4:+7346307 None:intergenic
AATGCTTCCACAGATAATAG+AGG 0.590589 8_4:+7348257 None:intergenic
TTTGCAATTTACACCTACAT+GGG 0.594564 8_4:-7348963 Msa1310720:CDS
GCTAGGGTCAATGTTCAGAA+GGG 0.597481 8_4:-7346025 Msa1310720:CDS
CAAGGAAGTTCTCATAATGG+TGG 0.601661 8_4:-7346063 Msa1310720:CDS
CGTCGCTGTTTCCTTCGCTG+TGG 0.603794 8_4:-7348915 Msa1310720:CDS
ACAAGAGCAACAACCCATGT+AGG 0.607296 8_4:+7348950 None:intergenic
TTATTCCAAGGCTTGTTATG+GGG 0.609416 8_4:-7346451 Msa1310720:intron
AATTGGATACTGTGATGCCA+AGG 0.611719 8_4:-7348454 Msa1310720:intron
AAAAGTCTGAAAATGTGACT+TGG 0.612931 8_4:+7348554 None:intergenic
GAAGTACTAACGTTCAGCTA+GGG 0.618696 8_4:-7346041 Msa1310720:CDS
AAAGGTGCCTCTATTATCTG+TGG 0.620989 8_4:-7348264 Msa1310720:CDS
AACTGCAACATGGGTCATGG+TGG 0.626233 8_4:-7349010 None:intergenic
GGAAAGATTCTGCTATAATG+GGG 0.642308 8_4:-7347838 Msa1310720:CDS
CTAGGGTCAATGTTCAGAAG+GGG 0.653279 8_4:-7346024 Msa1310720:CDS
GATCACGATCATTCATCCAA+AGG 0.657541 8_4:-7348483 Msa1310720:CDS
AAGATTCTGCTATAATGGGG+TGG 0.665156 8_4:-7347835 Msa1310720:CDS
AACCAGAAGTGATCATCTGA+TGG 0.668856 8_4:+7346705 None:intergenic
GATGAAAACCATCAATCACA+AGG 0.702204 8_4:-7348022 Msa1310720:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAAAATTATAAGATAAA+AGG + chr8_4:7348124-7348143 None:intergenic 10.0%
!!! ACTTTTTTTTTTAATATTGT+AGG - chr8_4:7348612-7348631 Msa1310720:CDS 10.0%
!!! CTTTTTTTTTTAATATTGTA+GGG - chr8_4:7348613-7348632 Msa1310720:CDS 10.0%
!!! ATTAAAATTTATTTTGTTTG+TGG + chr8_4:7348716-7348735 None:intergenic 10.0%
!!! TTTGAAAATTTTGATATGTT+TGG - chr8_4:7346212-7346231 Msa1310720:intron 15.0%
!! AATACAAAATATGATTAAAG+TGG + chr8_4:7346671-7346690 None:intergenic 15.0%
!!! TGTAGTTAATTATATTTTAC+TGG - chr8_4:7347178-7347197 Msa1310720:intron 15.0%
!! AATAATAATCATATGTCTTA+AGG + chr8_4:7347741-7347760 None:intergenic 15.0%
!! AAATTATAAGATAAAAGGTT+TGG + chr8_4:7348119-7348138 None:intergenic 15.0%
!!! AATGAAGAAAATAAAAGTAT+AGG + chr8_4:7348417-7348436 None:intergenic 15.0%
!!! TAATTTTTTACAAATGTAGA+TGG - chr8_4:7348777-7348796 Msa1310720:intron 15.0%
!!! AATTTTTTACAAATGTAGAT+GGG - chr8_4:7348778-7348797 Msa1310720:intron 15.0%
!! TGTATTATGATGTTAATTTC+AGG - chr8_4:7346685-7346704 Msa1310720:CDS 20.0%
!! GTATTATGATGTTAATTTCA+GGG - chr8_4:7346686-7346705 Msa1310720:CDS 20.0%
!! GAACAAAAATAAAGATATGT+AGG + chr8_4:7346748-7346767 None:intergenic 20.0%
!! TTAACAAATTTGATCAGTTA+TGG - chr8_4:7346978-7346997 Msa1310720:CDS 20.0%
!! AAACTTTATAATATGCATAC+TGG - chr8_4:7347030-7347049 Msa1310720:intron 20.0%
!!! TCATTTTTCAAGCAATTTTA+TGG - chr8_4:7347247-7347266 Msa1310720:intron 20.0%
!! GAAACAGAATCAATAATATA+TGG + chr8_4:7347368-7347387 None:intergenic 20.0%
!! TACTTGTGAAAATTAAACTT+TGG + chr8_4:7347419-7347438 None:intergenic 20.0%
!! AATCTTCATCAGTAATTTAT+TGG - chr8_4:7347521-7347540 Msa1310720:CDS 20.0%
!!! AATTCACCACTTTATTTTAA+TGG - chr8_4:7347599-7347618 Msa1310720:intron 20.0%
!!! GTTTTAAAAATCAATCAGAA+CGG + chr8_4:7347847-7347866 None:intergenic 20.0%
!!! ACAGAAATCTTAATTTTGAT+TGG + chr8_4:7347960-7347979 None:intergenic 20.0%
!! AAAATTAAGATTTCTGTTCA+TGG - chr8_4:7347963-7347982 Msa1310720:intron 20.0%
!!! AAAAAAAAAGTGTAAGAAAG+AGG + chr8_4:7348603-7348622 None:intergenic 20.0%
!!! ACCTTCTTTGATTTTTTGTA+AGG + chr8_4:7346147-7346166 None:intergenic 25.0%
! TAAGAATAACAAAGCAAACA+AGG + chr8_4:7346174-7346193 None:intergenic 25.0%
! TTTCTAACTGTAACACAAAA+TGG - chr8_4:7346301-7346320 Msa1310720:CDS 25.0%
! TTCTAACTGTAACACAAAAT+GGG - chr8_4:7346302-7346321 Msa1310720:CDS 25.0%
! AACATGTAATTTCAATACCT+TGG + chr8_4:7346539-7346558 None:intergenic 25.0%
!! GGTATTGAAATTACATGTTA+TGG - chr8_4:7346540-7346559 Msa1310720:intron 25.0%
! AAACCTTGAACAAAATGTAA+AGG + chr8_4:7346567-7346586 None:intergenic 25.0%
!!! TGTGTTTTGACTATTGTTTT+TGG - chr8_4:7346791-7346810 Msa1310720:CDS 25.0%
! TTAATTTACCTTGTGATTGA+TGG + chr8_4:7346962-7346981 None:intergenic 25.0%
!! TTTATCAAGGATCATTTTAC+TGG - chr8_4:7347107-7347126 Msa1310720:intron 25.0%
! TAAGCTGAACAAAGAAAATT+TGG + chr8_4:7347547-7347566 None:intergenic 25.0%
!!! TTTATTTTAATGGTTGCAGT+TGG - chr8_4:7347609-7347628 Msa1310720:intron 25.0%
!!! TTTTTGTTGCTTAATGTCAA+TGG - chr8_4:7347656-7347675 Msa1310720:intron 25.0%
! TGTCTTAAGGTAGAAAATAT+AGG + chr8_4:7347728-7347747 None:intergenic 25.0%
!!! TCTCAAAAGAATTTTGGAAA+AGG + chr8_4:7348333-7348352 None:intergenic 25.0%
!! ATGCTATCTCAAAAGAATTT+TGG + chr8_4:7348339-7348358 None:intergenic 25.0%
!!! TTGAGATAGCATTCTTTTTT+TGG - chr8_4:7348347-7348366 Msa1310720:intron 25.0%
!!! TAGCATTCTTTTTTTGGATA+TGG - chr8_4:7348353-7348372 Msa1310720:intron 25.0%
!!! AGCATTCTTTTTTTGGATAT+GGG - chr8_4:7348354-7348373 Msa1310720:intron 25.0%
! TGTGTATCTTAGATAACATA+TGG - chr8_4:7348464-7348483 Msa1310720:CDS 25.0%
! TGGCTATAAATCATGTATAA+TGG - chr8_4:7348484-7348503 Msa1310720:CDS 25.0%
! GGCTATAAATCATGTATAAT+GGG - chr8_4:7348485-7348504 Msa1310720:CDS 25.0%
! AAACCAAATACATTATTCCA+AGG - chr8_4:7348510-7348529 Msa1310720:CDS 25.0%
! AACAATTGCATATAATGGTA+GGG + chr8_4:7348669-7348688 None:intergenic 25.0%
! TAACAATTGCATATAATGGT+AGG + chr8_4:7348670-7348689 None:intergenic 25.0%
! TGTGTAACAATTGCATATAA+TGG + chr8_4:7348674-7348693 None:intergenic 25.0%
! ATTATATGCAATTGTTACAC+AGG - chr8_4:7348673-7348692 Msa1310720:CDS 25.0%
ATTTGCAATTTACACCTACA+TGG - chr8_4:7346009-7346028 Msa1310720:CDS 30.0%
TTTGCAATTTACACCTACAT+GGG - chr8_4:7346010-7346029 Msa1310720:CDS 30.0%
GCCTTACAAAAAATCAAAGA+AGG - chr8_4:7346143-7346162 Msa1310720:CDS 30.0%
!!! TTATGCAGAGTTGATGATTT+TGG - chr8_4:7346264-7346283 Msa1310720:intron 30.0%
!!! TATGCAGAGTTGATGATTTT+GGG - chr8_4:7346265-7346284 Msa1310720:intron 30.0%
ATATGAATAGTCCATTCTCT+TGG + chr8_4:7346346-7346365 None:intergenic 30.0%
AAAAGTCTGAAAATGTGACT+TGG + chr8_4:7346422-7346441 None:intergenic 30.0%
ATGATGTTAATTTCAGGGAA+AGG - chr8_4:7346691-7346710 Msa1310720:CDS 30.0%
!!! GTTTTGACTATTGTTTTTGG+AGG - chr8_4:7346794-7346813 Msa1310720:CDS 30.0%
!!! GTCGTTTTTAATAGATTCGT+CGG - chr8_4:7346898-7346917 Msa1310720:intron 30.0%
! TCATCAACATGCTTTTATCA+AGG - chr8_4:7347094-7347113 Msa1310720:intron 30.0%
!!! AAGGATCATTTTACTGGTTT+TGG - chr8_4:7347113-7347132 Msa1310720:intron 30.0%
!!! AGGATCATTTTACTGGTTTT+GGG - chr8_4:7347114-7347133 Msa1310720:intron 30.0%
! ATTAAGGCTTGGTTTCATTA+AGG - chr8_4:7347297-7347316 Msa1310720:intron 30.0%
GGTTCAATCATCATAGATAA+TGG + chr8_4:7347347-7347366 None:intergenic 30.0%
!! TCTGTTTTAGACTCATTGTA+GGG - chr8_4:7347388-7347407 Msa1310720:intron 30.0%
GATGATTTCAAGAAAGTTGT+TGG - chr8_4:7347458-7347477 Msa1310720:intron 30.0%
TCAAGAAAGTTGTTGGTATT+AGG - chr8_4:7347465-7347484 Msa1310720:intron 30.0%
CTGCAACCATTAAAATAAAG+TGG + chr8_4:7347608-7347627 None:intergenic 30.0%
!! ATGAACAAAAGTACTAAGTC+TGG + chr8_4:7347689-7347708 None:intergenic 30.0%
ATGAAGATACTTACAATGAC+AGG + chr8_4:7348027-7348046 None:intergenic 30.0%
AACAACTAATTCACCTTGTA+TGG + chr8_4:7348245-7348264 None:intergenic 30.0%
AAGCCTTGGAATAATGTATT+TGG + chr8_4:7348516-7348535 None:intergenic 30.0%
!! ATTATTCCAAGGCTTGTTAT+GGG - chr8_4:7348521-7348540 Msa1310720:CDS 30.0%
!!! AAACAGACTCGTCATTTTTA+GGG + chr8_4:7349002-7349021 None:intergenic 30.0%
GAACGTTCTCTTCATTATCT+TGG - chr8_4:7346080-7346099 Msa1310720:CDS 35.0%
TTCTCTTCATTATCTTGGCA+AGG - chr8_4:7346085-7346104 Msa1310720:CDS 35.0%
! TTTTGTAAGGCTTCAAAGAG+TGG + chr8_4:7346134-7346153 None:intergenic 35.0%
AAATTTGTGCTCCAAGAGAA+TGG - chr8_4:7346332-7346351 Msa1310720:CDS 35.0%
!!! TCAGACTTTTTTCTCTTCCA+AGG - chr8_4:7346432-7346451 Msa1310720:intron 35.0%
! TTCTCTTCCAAGGATGTTTT+TGG - chr8_4:7346442-7346461 Msa1310720:intron 35.0%
TCATCCAAAGGTGAAGAAAT+TGG - chr8_4:7346502-7346521 Msa1310720:intron 35.0%
GTATCCAATTTCTTCACCTT+TGG + chr8_4:7346509-7346528 None:intergenic 35.0%
! GGTCCTTTACATTTTGTTCA+AGG - chr8_4:7346561-7346580 Msa1310720:intron 35.0%
AATGCTTCCACAGATAATAG+AGG + chr8_4:7346719-7346738 None:intergenic 35.0%
! GTTTTTAATAGATTCGTCGG+TGG - chr8_4:7346901-7346920 Msa1310720:intron 35.0%
GATGAAAACCATCAATCACA+AGG - chr8_4:7346951-7346970 Msa1310720:intron 35.0%
TGGGAAAGATTCTGCTATAA+TGG - chr8_4:7347133-7347152 Msa1310720:intron 35.0%
GGGAAAGATTCTGCTATAAT+GGG - chr8_4:7347134-7347153 Msa1310720:intron 35.0%
GGAAAGATTCTGCTATAATG+GGG - chr8_4:7347135-7347154 Msa1310720:intron 35.0%
TTATGGATCTGTGACAAAGT+TGG - chr8_4:7347264-7347283 Msa1310720:intron 35.0%
AGTTGGACTATGTGACATTA+AGG - chr8_4:7347281-7347300 Msa1310720:intron 35.0%
!! CTCTGTTTTAGACTCATTGT+AGG - chr8_4:7347387-7347406 Msa1310720:intron 35.0%
!! CTGTTTTAGACTCATTGTAG+GGG - chr8_4:7347389-7347408 Msa1310720:intron 35.0%
TGAAATCATCTTCAAGTGCA+CGG + chr8_4:7347448-7347467 None:intergenic 35.0%
TTGGTATCTTTGGATCTTTG+TGG - chr8_4:7347628-7347647 Msa1310720:intron 35.0%
AGATTTCTGTTCATGGTTTC+AGG - chr8_4:7347970-7347989 Msa1310720:intron 35.0%
! TTGTATGGCTGAATGCTTTT+CGG + chr8_4:7348230-7348249 None:intergenic 35.0%
GGATCAAGTGAATCAAAAAG+AGG + chr8_4:7348312-7348331 None:intergenic 35.0%
! GTTATCTAAGATACACAAGC+AGG + chr8_4:7348461-7348480 None:intergenic 35.0%
!! CATTATTCCAAGGCTTGTTA+TGG - chr8_4:7348520-7348539 Msa1310720:CDS 35.0%
!! TTATTCCAAGGCTTGTTATG+GGG - chr8_4:7348522-7348541 Msa1310720:CDS 35.0%
TTGTACTTGATCGTCGAATA+TGG + chr8_4:7348821-7348840 None:intergenic 35.0%
CAAGTACAAACACGACTTAT+TGG - chr8_4:7348832-7348851 Msa1310720:CDS 35.0%
TACAAACACGACTTATTGGT+TGG - chr8_4:7348836-7348855 Msa1310720:CDS 35.0%
! ACAAACACGACTTATTGGTT+GGG - chr8_4:7348837-7348856 Msa1310720:CDS 35.0%
GCAAAGAAGAAAGGATTAAG+AGG - chr8_4:7348868-7348887 Msa1310720:CDS 35.0%
!!! CAAACAGACTCGTCATTTTT+AGG + chr8_4:7349003-7349022 None:intergenic 35.0%
! GCTTCCTTGTAGTCTTAAAG+AGG - chr8_4:7346366-7346385 Msa1310720:intron 40.0%
!! TCGTCCTCTTTAAGACTACA+AGG + chr8_4:7346373-7346392 None:intergenic 40.0%
GATCACGATCATTCATCCAA+AGG - chr8_4:7346490-7346509 Msa1310720:CDS 40.0%
AATTGGATACTGTGATGCCA+AGG - chr8_4:7346519-7346538 Msa1310720:intron 40.0%
!! AAAGGTGCCTCTATTATCTG+TGG - chr8_4:7346709-7346728 Msa1310720:CDS 40.0%
! AAGATTCTGCTATAATGGGG+TGG - chr8_4:7347138-7347157 Msa1310720:intron 40.0%
GACTATGTGACATTAAGGCT+TGG - chr8_4:7347286-7347305 Msa1310720:intron 40.0%
! ATGGTTGCAGTTGGTATCTT+TGG - chr8_4:7347618-7347637 Msa1310720:intron 40.0%
! GTTTTACAAACCAAAGCGAC+CGG - chr8_4:7347773-7347792 Msa1310720:intron 40.0%
! TTCTGTTCATGGTTTCAGGT+TGG - chr8_4:7347974-7347993 Msa1310720:intron 40.0%
!! CAGGTTGGCACACATATTTT+TGG - chr8_4:7347989-7348008 Msa1310720:intron 40.0%
TCTTAAGCTTCTTCTTGCTG+TGG - chr8_4:7348159-7348178 Msa1310720:intron 40.0%
! CTTAAGCTTCTTCTTGCTGT+GGG - chr8_4:7348160-7348179 Msa1310720:intron 40.0%
!! GAAAAGCATTCAGCCATACA+AGG - chr8_4:7348229-7348248 Msa1310720:CDS 40.0%
AACCATCAGATGATCACTTC+TGG - chr8_4:7348266-7348285 Msa1310720:CDS 40.0%
AACCAGAAGTGATCATCTGA+TGG + chr8_4:7348271-7348290 None:intergenic 40.0%
CTAAGATACACAAGCAGGTA+AGG + chr8_4:7348456-7348475 None:intergenic 40.0%
! ACTTATTGGTTGGGCACAAA+AGG - chr8_4:7348846-7348865 Msa1310720:CDS 40.0%
GCACAAAAGGCAAAGAAGAA+AGG - chr8_4:7348859-7348878 Msa1310720:CDS 40.0%
GTCCAAGGAAGTTCTCATAA+TGG - chr8_4:7348907-7348926 Msa1310720:CDS 40.0%
CACCATTATGAGAACTTCCT+TGG + chr8_4:7348912-7348931 None:intergenic 40.0%
CAAGGAAGTTCTCATAATGG+TGG - chr8_4:7348910-7348929 Msa1310720:CDS 40.0%
! GAAGTACTAACGTTCAGCTA+GGG - chr8_4:7348932-7348951 Msa1310720:CDS 40.0%
! GACAATGGCATTGTTTTCTG+GGG + chr8_4:7348980-7348999 None:intergenic 40.0%
! GGACAATGGCATTGTTTTCT+GGG + chr8_4:7348981-7349000 None:intergenic 40.0%
!!! CTCGTCATTTTTAGGGACAA+TGG + chr8_4:7348995-7349014 None:intergenic 40.0%
ACAAGAGCAACAACCCATGT+AGG + chr8_4:7346026-7346045 None:intergenic 45.0%
AGGCTTCAAAGAGTGGTTTC+TGG + chr8_4:7346127-7346146 None:intergenic 45.0%
AGCAGTGCCAAAAACATCCT+TGG + chr8_4:7346452-7346471 None:intergenic 45.0%
!!! AGGATGTTTTTGGCACTGCT+AGG - chr8_4:7346452-7346471 Msa1310720:CDS 45.0%
! TTCTGCTATAATGGGGTGGT+TGG - chr8_4:7347142-7347161 Msa1310720:intron 45.0%
TCAACGAGACTCTGATCAAC+CGG + chr8_4:7347795-7347814 None:intergenic 45.0%
TGATCAGAGTCTCGTTGAAC+TGG - chr8_4:7347797-7347816 Msa1310720:intron 45.0%
ATCAAAAAGAGGACGATGCG+AGG + chr8_4:7348301-7348320 None:intergenic 45.0%
AGTTACCCCATAACAAGCCT+TGG + chr8_4:7348530-7348549 None:intergenic 45.0%
GATAGCAACCATTCTGTCCA+AGG - chr8_4:7348892-7348911 Msa1310720:CDS 45.0%
GAGAACTTCCTTGGACAGAA+TGG + chr8_4:7348903-7348922 None:intergenic 45.0%
!! GGAAGTACTAACGTTCAGCT+AGG - chr8_4:7348931-7348950 Msa1310720:CDS 45.0%
AGCTAGGGTCAATGTTCAGA+AGG - chr8_4:7348947-7348966 Msa1310720:CDS 45.0%
GCTAGGGTCAATGTTCAGAA+GGG - chr8_4:7348948-7348967 Msa1310720:CDS 45.0%
CTAGGGTCAATGTTCAGAAG+GGG - chr8_4:7348949-7348968 Msa1310720:CDS 45.0%
! GGGACAATGGCATTGTTTTC+TGG + chr8_4:7348982-7349001 None:intergenic 45.0%
AAGAGAACGTTCCACAGCGA+AGG + chr8_4:7346072-7346091 None:intergenic 50.0%
GATCGTGATCGTCACCTAGA+AGG + chr8_4:7346480-7346499 None:intergenic 50.0%
TAATGCAGCGCCAGAACGAA+CGG - chr8_4:7347055-7347074 Msa1310720:intron 50.0%
! GCTATAATGGGGTGGTTGGT+AGG - chr8_4:7347146-7347165 Msa1310720:intron 50.0%
GGTGGAGGAGAAGCTGAAGA+AGG - chr8_4:7345981-7346000 Msa1310720:CDS 55.0%
AGCGCCAGAACGAACGGATA+CGG - chr8_4:7347061-7347080 Msa1310720:intron 55.0%
GTCACCGTATCCGTTCGTTC+TGG + chr8_4:7347068-7347087 None:intergenic 55.0%
CTCTGATCAACCGGTCGCTT+TGG + chr8_4:7347786-7347805 None:intergenic 55.0%
! CGTCGCTGTTTCCTTCGCTG+TGG - chr8_4:7346058-7346077 Msa1310720:CDS 60.0%
! AGATTCGTCGGTGGAAGCGC+TGG - chr8_4:7346910-7346929 Msa1310720:intron 60.0%
!! GATTCGTCGGTGGAAGCGCT+GGG - chr8_4:7346911-7346930 Msa1310720:intron 60.0%
GGCACTGCTAGGCGCCTTCT+AGG - chr8_4:7346463-7346482 Msa1310720:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 7345972 7349023 7345972 ID=Msa1310720;Name=Msa1310720
chr8_4 mRNA 7345972 7349023 7345972 ID=Msa1310720-mRNA-1;Parent=Msa1310720;Name=Msa1310720-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.16|0.07|1|1|1|13|0|520
chr8_4 exon 7348831 7349023 7348831 ID=Msa1310720-mRNA-1:exon:2664;Parent=Msa1310720-mRNA-1
chr8_4 exon 7348455 7348723 7348455 ID=Msa1310720-mRNA-1:exon:2663;Parent=Msa1310720-mRNA-1
chr8_4 exon 7348172 7348288 7348172 ID=Msa1310720-mRNA-1:exon:2662;Parent=Msa1310720-mRNA-1
chr8_4 exon 7348023 7348083 7348023 ID=Msa1310720-mRNA-1:exon:2661;Parent=Msa1310720-mRNA-1
chr8_4 exon 7347832 7347932 7347832 ID=Msa1310720-mRNA-1:exon:2660;Parent=Msa1310720-mRNA-1
chr8_4 exon 7347677 7347751 7347677 ID=Msa1310720-mRNA-1:exon:2659;Parent=Msa1310720-mRNA-1
chr8_4 exon 7347509 7347597 7347509 ID=Msa1310720-mRNA-1:exon:2658;Parent=Msa1310720-mRNA-1
chr8_4 exon 7347318 7347367 7347318 ID=Msa1310720-mRNA-1:exon:2657;Parent=Msa1310720-mRNA-1
chr8_4 exon 7346963 7347003 7346963 ID=Msa1310720-mRNA-1:exon:2656;Parent=Msa1310720-mRNA-1
chr8_4 exon 7346620 7346829 7346620 ID=Msa1310720-mRNA-1:exon:2655;Parent=Msa1310720-mRNA-1
chr8_4 exon 7346452 7346519 7346452 ID=Msa1310720-mRNA-1:exon:2654;Parent=Msa1310720-mRNA-1
chr8_4 exon 7346301 7346361 7346301 ID=Msa1310720-mRNA-1:exon:2653;Parent=Msa1310720-mRNA-1
chr8_4 exon 7345972 7346199 7345972 ID=Msa1310720-mRNA-1:exon:2652;Parent=Msa1310720-mRNA-1
chr8_4 CDS 7348831 7349023 7348831 ID=Msa1310720-mRNA-1:cds;Parent=Msa1310720-mRNA-1
chr8_4 CDS 7348455 7348723 7348455 ID=Msa1310720-mRNA-1:cds;Parent=Msa1310720-mRNA-1
chr8_4 CDS 7348172 7348288 7348172 ID=Msa1310720-mRNA-1:cds;Parent=Msa1310720-mRNA-1
chr8_4 CDS 7348023 7348083 7348023 ID=Msa1310720-mRNA-1:cds;Parent=Msa1310720-mRNA-1
chr8_4 CDS 7347832 7347932 7347832 ID=Msa1310720-mRNA-1:cds;Parent=Msa1310720-mRNA-1
chr8_4 CDS 7347677 7347751 7347677 ID=Msa1310720-mRNA-1:cds;Parent=Msa1310720-mRNA-1
chr8_4 CDS 7347509 7347597 7347509 ID=Msa1310720-mRNA-1:cds;Parent=Msa1310720-mRNA-1
chr8_4 CDS 7347318 7347367 7347318 ID=Msa1310720-mRNA-1:cds;Parent=Msa1310720-mRNA-1
chr8_4 CDS 7346963 7347003 7346963 ID=Msa1310720-mRNA-1:cds;Parent=Msa1310720-mRNA-1
chr8_4 CDS 7346620 7346829 7346620 ID=Msa1310720-mRNA-1:cds;Parent=Msa1310720-mRNA-1
chr8_4 CDS 7346452 7346519 7346452 ID=Msa1310720-mRNA-1:cds;Parent=Msa1310720-mRNA-1
chr8_4 CDS 7346301 7346361 7346301 ID=Msa1310720-mRNA-1:cds;Parent=Msa1310720-mRNA-1
chr8_4 CDS 7345972 7346199 7345972 ID=Msa1310720-mRNA-1:cds;Parent=Msa1310720-mRNA-1
Gene Sequence

>Msa1310720

ATGGGTCATGGTGGAGGAGAAGCTGAAGAAGGTAGTGATTTGCAATTTACACCTACATGGGTTGTTGCTCTTGTTTGCACTGTCATCGTCGCTGTTTCCTTCGCTGTGGAACGTTCTCTTCATTATCTTGGCAAGGTTCTTAAGAAGAAAAACCAGAAACCACTCTTTGAAGCCTTACAAAAAATCAAAGAAGAGTTGATGATTTTGGGTTTTATTTCACTGTTTCTAACTGTAACACAAAATGGGATAACGAAAATTTGTGCTCCAAGAGAATGGACTATTCATATGCTTCCTTGTAGTCTTAAAGAGGACGATGAATTTAAAGAAACAAAATTATCATCCAAGTCACATTTTCAGACTTTTTTCTCTTCCAAGGATGTTTTTGGCACTGCTAGGCGCCTTCTAGGTGACGATCACGATCATTCATCCAAAGGTGAAGAAATTGGATACTGTGATGCCAAGGGAAAGGTGCCTCTATTATCTGTGGAAGCATTGCATCACCTACATATCTTTATTTTTGTTCTAGCTGTTGTTCATGTGACTTCATGTGTTTTGACTATTGTTTTTGGAGGATTAAATATTCGTCGGTGGAAGCGCTGGGAAGACTCAATTGTTGCAGATGAAAACCATCAATCACAAGCGCCAGAACGAACGGATACGGTGACTCATGTTCATCAACATGCTTTTATCAAGGATCATTTTACTGGTTTTGGGAAAGATTCTGCTATAATGGGGTGGTTGAAATCATTTTTCAAGCAATTTTATGGATCTGTGACAAAGTTGGACTATGTGACATTAAGGCTTGGTTTCATTAAGACTCATTGTAGGGGAAATCCAAAGTTTAATTTTCACAAGTACATGAACCGTGCACTTGAAGATGATTTCAAGAAAGTTGTTGGTATTAGTTGGTATCTTTGGATCTTTGTGGTCATATTTTTGTTGCTTAATGTCAATGGTTGGCACACATATTTTTGGATTGCTTTCATTCCTGTCATTCTTCTTCTTGCTGTGGGAACAAAGCTTGAACATGTAATAATTCAATTAGCACATGAAGTAGCCGAAAAGCATTCAGCCATACAAGGTGAATTAGTTGTTCAACCATCAGATGATCACTTCTGGTTTCATCGTCCTCGCATCGTCCTCTTTTTGATTCACTTGATCCTTTTCCAAAATTCTTTTGAGATAGCATTCTTTTTTTGGATATGGATAACATATGGCTATAAATCATGTATAATGGGACAAACCAAATACATTATTCCAAGGCTTGTTATGGGGGTATTTATTCAAGTACTATGTAGTTATAGTACCCTACCATTATATGCAATTGTTACACAGATGGGAACTCACTTTAAGAGATCCATATTCGACGATCAAGTACAAACACGACTTATTGGTTGGGCACAAAAGGCAAAGAAGAAAGGATTAAGAGGTGATAGCAACCATTCTGTCCAAGGAAGTTCTCATAATGGTGGAAGTACTAACGTTCAGCTAGGGTCAATGTTCAGAAGGGGAGCTGCCCCAGAAAACAATGCCATTGTCCCTAAAAATGACGAGTCTGTTTGA

Protein sequence

>Msa1310720

MGHGGGEAEEGSDLQFTPTWVVALVCTVIVAVSFAVERSLHYLGKVLKKKNQKPLFEALQKIKEELMILGFISLFLTVTQNGITKICAPREWTIHMLPCSLKEDDEFKETKLSSKSHFQTFFSSKDVFGTARRLLGDDHDHSSKGEEIGYCDAKGKVPLLSVEALHHLHIFIFVLAVVHVTSCVLTIVFGGLNIRRWKRWEDSIVADENHQSQAPERTDTVTHVHQHAFIKDHFTGFGKDSAIMGWLKSFFKQFYGSVTKLDYVTLRLGFIKTHCRGNPKFNFHKYMNRALEDDFKKVVGISWYLWIFVVIFLLLNVNGWHTYFWIAFIPVILLLAVGTKLEHVIIQLAHEVAEKHSAIQGELVVQPSDDHFWFHRPRIVLFLIHLILFQNSFEIAFFFWIWITYGYKSCIMGQTKYIIPRLVMGVFIQVLCSYSTLPLYAIVTQMGTHFKRSIFDDQVQTRLIGWAQKAKKKGLRGDSNHSVQGSSHNGGSTNVQLGSMFRRGAAPENNAIVPKNDESV*