Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1310720 | XP_013444041.1 | 95.079 | 508 | 25 | 0 | 13 | 520 | 13 | 520 | 0.0 | 999 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1310720 | sp|O49621|MLO1_ARATH | 64.498 | 538 | 157 | 8 | 1 | 517 | 1 | 525 | 0.0 | 695 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1310720 | G7ZWP9 | 95.079 | 508 | 25 | 0 | 13 | 520 | 13 | 520 | 0.0 | 999 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1272670 | Msa1310720 | 0.885819 | 5.849812e-72 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1310720 | MtrunA17_Chr8g0337941 | 95.079 | 508 | 25 | 0 | 13 | 520 | 13 | 520 | 0.0 | 999 |
Msa1310720 | MtrunA17_Chr8g0337931 | 78.831 | 496 | 97 | 3 | 30 | 520 | 15 | 507 | 0.0 | 801 |
Msa1310720 | MtrunA17_Chr3g0145831 | 68.147 | 518 | 142 | 7 | 12 | 519 | 12 | 516 | 0.0 | 690 |
Msa1310720 | MtrunA17_Chr2g0291441 | 53.187 | 455 | 186 | 6 | 6 | 460 | 2 | 429 | 8.72e-158 | 457 |
Msa1310720 | MtrunA17_Chr3g0144171 | 43.952 | 496 | 253 | 9 | 4 | 496 | 3 | 476 | 3.01e-130 | 390 |
Msa1310720 | MtrunA17_Chr2g0326301 | 42.443 | 483 | 252 | 6 | 11 | 482 | 7 | 474 | 4.86e-127 | 383 |
Msa1310720 | MtrunA17_Chr8g0370181 | 43.763 | 473 | 245 | 5 | 1 | 473 | 27 | 478 | 4.21e-126 | 380 |
Msa1310720 | MtrunA17_Chr5g0407381 | 42.240 | 509 | 260 | 7 | 5 | 503 | 14 | 498 | 9.36e-126 | 379 |
Msa1310720 | MtrunA17_Chr6g0462051 | 41.736 | 484 | 264 | 9 | 14 | 493 | 11 | 480 | 1.51e-123 | 374 |
Msa1310720 | MtrunA17_Chr2g0317801 | 42.251 | 471 | 247 | 8 | 9 | 477 | 6 | 453 | 6.68e-118 | 358 |
Msa1310720 | MtrunA17_Chr3g0144201 | 38.667 | 525 | 273 | 8 | 10 | 492 | 9 | 526 | 6.08e-112 | 343 |
Msa1310720 | MtrunA17_Chr4g0040611 | 35.590 | 517 | 285 | 11 | 6 | 517 | 2 | 475 | 6.08e-104 | 323 |
Msa1310720 | MtrunA17_Chr2g0277471 | 36.326 | 479 | 276 | 7 | 9 | 482 | 6 | 460 | 5.21e-89 | 283 |
Msa1310720 | MtrunA17_Chr5g0405641 | 34.509 | 397 | 237 | 11 | 9 | 400 | 7 | 385 | 2.31e-53 | 185 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1310720 | AT4G02600.2 | 64.498 | 538 | 157 | 8 | 1 | 517 | 1 | 525 | 0.0 | 695 |
Msa1310720 | AT4G02600.1 | 64.498 | 538 | 157 | 8 | 1 | 517 | 1 | 525 | 0.0 | 695 |
Msa1310720 | AT2G44110.1 | 55.728 | 515 | 202 | 8 | 8 | 520 | 2 | 492 | 0.0 | 576 |
Msa1310720 | AT2G44110.2 | 55.728 | 515 | 203 | 8 | 8 | 520 | 2 | 493 | 0.0 | 575 |
Msa1310720 | AT4G24250.1 | 54.637 | 496 | 197 | 7 | 6 | 496 | 2 | 474 | 6.25e-176 | 504 |
Msa1310720 | AT4G24250.2 | 55.529 | 425 | 161 | 7 | 6 | 425 | 2 | 403 | 4.28e-148 | 431 |
Msa1310720 | AT2G39200.1 | 42.363 | 491 | 263 | 6 | 14 | 497 | 8 | 485 | 6.77e-129 | 387 |
Msa1310720 | AT2G33670.1 | 44.372 | 462 | 231 | 5 | 13 | 474 | 16 | 451 | 1.32e-128 | 384 |
Msa1310720 | AT1G61560.1 | 39.847 | 522 | 284 | 8 | 14 | 518 | 10 | 518 | 4.99e-127 | 383 |
Msa1310720 | AT1G61560.4 | 40.076 | 524 | 280 | 10 | 14 | 518 | 10 | 518 | 5.29e-126 | 380 |
Msa1310720 | AT2G17430.1 | 42.380 | 479 | 240 | 7 | 3 | 474 | 18 | 467 | 1.14e-124 | 375 |
Msa1310720 | AT1G11310.1 | 42.540 | 496 | 263 | 9 | 14 | 497 | 10 | 495 | 1.24e-124 | 377 |
Msa1310720 | AT1G42560.1 | 44.156 | 462 | 232 | 7 | 17 | 474 | 19 | 458 | 3.89e-121 | 363 |
Msa1310720 | AT2G17480.1 | 40.840 | 524 | 266 | 8 | 14 | 517 | 41 | 540 | 8.39e-120 | 365 |
Msa1310720 | AT1G61560.10 | 42.539 | 449 | 237 | 6 | 14 | 454 | 10 | 445 | 1.48e-118 | 357 |
Msa1310720 | AT5G53760.2 | 42.213 | 488 | 258 | 9 | 1 | 480 | 1 | 472 | 6.02e-118 | 359 |
Msa1310720 | AT5G53760.1 | 42.213 | 488 | 258 | 9 | 1 | 480 | 1 | 472 | 6.02e-118 | 359 |
Msa1310720 | AT1G26700.1 | 41.909 | 482 | 255 | 9 | 7 | 480 | 3 | 467 | 1.77e-117 | 357 |
Msa1310720 | AT1G26700.2 | 41.909 | 482 | 255 | 9 | 7 | 480 | 3 | 467 | 1.77e-117 | 357 |
Msa1310720 | AT5G65970.1 | 42.117 | 463 | 234 | 6 | 4 | 466 | 28 | 456 | 2.52e-114 | 350 |
Msa1310720 | AT3G45290.1 | 38.542 | 480 | 263 | 5 | 5 | 484 | 10 | 457 | 3.86e-112 | 342 |
Msa1310720 | AT1G61560.2 | 38.806 | 469 | 257 | 8 | 67 | 518 | 1 | 456 | 6.59e-107 | 329 |
Msa1310720 | AT1G61560.3 | 38.806 | 469 | 257 | 8 | 67 | 518 | 1 | 456 | 6.59e-107 | 329 |
Msa1310720 | AT1G61560.7 | 41.527 | 419 | 225 | 5 | 14 | 425 | 10 | 415 | 3.90e-106 | 323 |
Msa1310720 | AT1G61560.9 | 41.527 | 419 | 225 | 5 | 14 | 425 | 10 | 415 | 3.90e-106 | 323 |
Msa1310720 | AT1G11310.3 | 41.761 | 443 | 236 | 9 | 67 | 497 | 1 | 433 | 1.57e-105 | 325 |
Msa1310720 | AT1G61560.6 | 42.365 | 406 | 212 | 6 | 14 | 412 | 10 | 400 | 8.69e-105 | 320 |
Msa1310720 | AT1G61560.8 | 42.365 | 406 | 212 | 6 | 14 | 412 | 10 | 400 | 8.69e-105 | 320 |
Msa1310720 | AT1G61560.5 | 42.365 | 406 | 212 | 6 | 14 | 412 | 10 | 400 | 8.69e-105 | 320 |
Msa1310720 | AT1G11310.2 | 42.482 | 419 | 224 | 7 | 14 | 425 | 10 | 418 | 1.21e-104 | 320 |
Msa1310720 | AT1G11000.1 | 36.076 | 474 | 267 | 5 | 9 | 474 | 6 | 451 | 1.90e-88 | 283 |
Msa1310720 | AT1G11000.3 | 36.076 | 474 | 267 | 5 | 9 | 474 | 6 | 451 | 1.90e-88 | 283 |
Msa1310720 | AT1G42560.2 | 41.146 | 384 | 200 | 6 | 17 | 396 | 19 | 380 | 7.65e-86 | 270 |
Msa1310720 | AT5G65970.2 | 40.800 | 375 | 188 | 6 | 4 | 378 | 28 | 368 | 8.70e-84 | 268 |
Msa1310720 | AT1G11000.2 | 35.765 | 425 | 237 | 5 | 9 | 425 | 6 | 402 | 1.38e-72 | 237 |
Find 88 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCTAACTGTAACACAAAA+TGG | 0.132671 | 8_4:-7348672 | Msa1310720:CDS |
ATGCTATCTCAAAAGAATTT+TGG | 0.172414 | 8_4:+7346637 | None:intergenic |
AAGCCTTGGAATAATGTATT+TGG | 0.186338 | 8_4:+7346460 | None:intergenic |
TTATGCAGAGTTGATGATTT+TGG | 0.195716 | 8_4:-7348709 | Msa1310720:intron |
ATGGTTGCAGTTGGTATCTT+TGG | 0.224025 | 8_4:-7347355 | Msa1310720:intron |
CAAGTACAAACACGACTTAT+TGG | 0.251745 | 8_4:-7346141 | Msa1310720:CDS |
TGGCTATAAATCATGTATAA+TGG | 0.276113 | 8_4:-7346489 | Msa1310720:CDS |
GGCACTGCTAGGCGCCTTCT+AGG | 0.278687 | 8_4:-7348510 | Msa1310720:CDS |
ATTAAGGCTTGGTTTCATTA+AGG | 0.279842 | 8_4:-7347676 | Msa1310720:intron |
CATTATTCCAAGGCTTGTTA+TGG | 0.285473 | 8_4:-7346453 | Msa1310720:CDS |
TGGGAAAGATTCTGCTATAA+TGG | 0.288863 | 8_4:-7347840 | Msa1310720:CDS |
TCATCCAAAGGTGAAGAAAT+TGG | 0.289923 | 8_4:-7348471 | Msa1310720:CDS |
AGGCTTCAAAGAGTGGTTTC+TGG | 0.304493 | 8_4:+7348849 | None:intergenic |
TCAAGAAAGTTGTTGGTATT+AGG | 0.310088 | 8_4:-7347508 | Msa1310720:intron |
GTATCCAATTTCTTCACCTT+TGG | 0.311680 | 8_4:+7348467 | None:intergenic |
AACAACTAATTCACCTTGTA+TGG | 0.320206 | 8_4:+7346731 | None:intergenic |
GGGAAAGATTCTGCTATAAT+GGG | 0.325346 | 8_4:-7347839 | Msa1310720:CDS |
TTGTACTTGATCGTCGAATA+TGG | 0.329062 | 8_4:+7346155 | None:intergenic |
AGTTGGACTATGTGACATTA+AGG | 0.334578 | 8_4:-7347692 | Msa1310720:CDS |
TTAATTTACCTTGTGATTGA+TGG | 0.340185 | 8_4:+7348014 | None:intergenic |
GGCTATAAATCATGTATAAT+GGG | 0.355523 | 8_4:-7346488 | Msa1310720:CDS |
CACCATTATGAGAACTTCCT+TGG | 0.355982 | 8_4:+7346064 | None:intergenic |
GAACGTTCTCTTCATTATCT+TGG | 0.368049 | 8_4:-7348893 | Msa1310720:CDS |
GATGATTTCAAGAAAGTTGT+TGG | 0.369692 | 8_4:-7347515 | Msa1310720:CDS |
AGATTCGTCGGTGGAAGCGC+TGG | 0.380741 | 8_4:-7348063 | Msa1310720:CDS |
ATTATTCCAAGGCTTGTTAT+GGG | 0.386543 | 8_4:-7346452 | Msa1310720:CDS |
GATCGTGATCGTCACCTAGA+AGG | 0.405673 | 8_4:+7348496 | None:intergenic |
GCAAAGAAGAAAGGATTAAG+AGG | 0.413779 | 8_4:-7346105 | Msa1310720:CDS |
AACCATCAGATGATCACTTC+TGG | 0.416963 | 8_4:-7346707 | Msa1310720:CDS |
CTTAAGCTTCTTCTTGCTGT+GGG | 0.424296 | 8_4:-7346813 | Msa1310720:intron |
TACTTGTGAAAATTAAACTT+TGG | 0.435190 | 8_4:+7347557 | None:intergenic |
TTGGTATCTTTGGATCTTTG+TGG | 0.439724 | 8_4:-7347345 | Msa1310720:CDS |
TGTGTAACAATTGCATATAA+TGG | 0.443851 | 8_4:+7346302 | None:intergenic |
ACTTATTGGTTGGGCACAAA+AGG | 0.448832 | 8_4:-7346127 | Msa1310720:CDS |
TTCTAACTGTAACACAAAAT+GGG | 0.451535 | 8_4:-7348671 | Msa1310720:CDS |
TACAAACACGACTTATTGGT+TGG | 0.457492 | 8_4:-7346137 | Msa1310720:CDS |
GTCACCGTATCCGTTCGTTC+TGG | 0.462789 | 8_4:+7347908 | None:intergenic |
TCTTAAGCTTCTTCTTGCTG+TGG | 0.475997 | 8_4:-7346814 | Msa1310720:intron |
GTCCAAGGAAGTTCTCATAA+TGG | 0.479254 | 8_4:-7346066 | Msa1310720:CDS |
ATTTGCAATTTACACCTACA+TGG | 0.479370 | 8_4:-7348964 | Msa1310720:CDS |
GCTTCCTTGTAGTCTTAAAG+AGG | 0.480638 | 8_4:-7348607 | Msa1310720:CDS |
AAATTTGTGCTCCAAGAGAA+TGG | 0.480671 | 8_4:-7348641 | Msa1310720:CDS |
TGTGTATCTTAGATAACATA+TGG | 0.489266 | 8_4:-7346509 | Msa1310720:intron |
TTATGGATCTGTGACAAAGT+TGG | 0.492609 | 8_4:-7347709 | Msa1310720:CDS |
TTCTCTTCATTATCTTGGCA+AGG | 0.493187 | 8_4:-7348888 | Msa1310720:CDS |
TAACAATTGCATATAATGGT+AGG | 0.495285 | 8_4:+7346306 | None:intergenic |
TTCTGCTATAATGGGGTGGT+TGG | 0.507298 | 8_4:-7347831 | Msa1310720:intron |
GAGAACTTCCTTGGACAGAA+TGG | 0.508131 | 8_4:+7346073 | None:intergenic |
GACTATGTGACATTAAGGCT+TGG | 0.511293 | 8_4:-7347687 | Msa1310720:CDS |
TGCAACATGGGTCATGGTGG+AGG | 0.522794 | 8_4:-7349007 | None:intergenic |
GATTCGTCGGTGGAAGCGCT+GGG | 0.523542 | 8_4:-7348062 | Msa1310720:CDS |
TAATGCAGCGCCAGAACGAA+CGG | 0.528204 | 8_4:-7347918 | Msa1310720:intron |
ATATGAATAGTCCATTCTCT+TGG | 0.528672 | 8_4:+7348630 | None:intergenic |
GGAAGTACTAACGTTCAGCT+AGG | 0.531495 | 8_4:-7346042 | Msa1310720:CDS |
ACAAACACGACTTATTGGTT+GGG | 0.532061 | 8_4:-7346136 | Msa1310720:CDS |
ATGAAGATACTTACAATGAC+AGG | 0.540056 | 8_4:+7346949 | None:intergenic |
GCACAAAAGGCAAAGAAGAA+AGG | 0.540578 | 8_4:-7346114 | Msa1310720:CDS |
TCGTCCTCTTTAAGACTACA+AGG | 0.541149 | 8_4:+7348603 | None:intergenic |
AAACCAAATACATTATTCCA+AGG | 0.542744 | 8_4:-7346463 | Msa1310720:CDS |
TGAAATCATCTTCAAGTGCA+CGG | 0.542872 | 8_4:+7347528 | None:intergenic |
AGCTAGGGTCAATGTTCAGA+AGG | 0.544634 | 8_4:-7346026 | Msa1310720:CDS |
AGTTACCCCATAACAAGCCT+TGG | 0.548441 | 8_4:+7346446 | None:intergenic |
AGCGCCAGAACGAACGGATA+CGG | 0.549065 | 8_4:-7347912 | Msa1310720:CDS |
GGTGGAGGAGAAGCTGAAGA+AGG | 0.568786 | 8_4:-7348992 | Msa1310720:CDS |
CACAACTGCAACATGGGTCA+TGG | 0.569291 | 8_4:-7349013 | None:intergenic |
GAAAAGCATTCAGCCATACA+AGG | 0.571272 | 8_4:-7346744 | Msa1310720:CDS |
ATTATATGCAATTGTTACAC+AGG | 0.579900 | 8_4:-7346300 | Msa1310720:intron |
AAGAGAACGTTCCACAGCGA+AGG | 0.580982 | 8_4:+7348904 | None:intergenic |
GATAGCAACCATTCTGTCCA+AGG | 0.585088 | 8_4:-7346081 | Msa1310720:CDS |
AACAATTGCATATAATGGTA+GGG | 0.585156 | 8_4:+7346307 | None:intergenic |
AATGCTTCCACAGATAATAG+AGG | 0.590589 | 8_4:+7348257 | None:intergenic |
TTTGCAATTTACACCTACAT+GGG | 0.594564 | 8_4:-7348963 | Msa1310720:CDS |
GCTAGGGTCAATGTTCAGAA+GGG | 0.597481 | 8_4:-7346025 | Msa1310720:CDS |
CAAGGAAGTTCTCATAATGG+TGG | 0.601661 | 8_4:-7346063 | Msa1310720:CDS |
CGTCGCTGTTTCCTTCGCTG+TGG | 0.603794 | 8_4:-7348915 | Msa1310720:CDS |
ACAAGAGCAACAACCCATGT+AGG | 0.607296 | 8_4:+7348950 | None:intergenic |
TTATTCCAAGGCTTGTTATG+GGG | 0.609416 | 8_4:-7346451 | Msa1310720:intron |
AATTGGATACTGTGATGCCA+AGG | 0.611719 | 8_4:-7348454 | Msa1310720:intron |
AAAAGTCTGAAAATGTGACT+TGG | 0.612931 | 8_4:+7348554 | None:intergenic |
GAAGTACTAACGTTCAGCTA+GGG | 0.618696 | 8_4:-7346041 | Msa1310720:CDS |
AAAGGTGCCTCTATTATCTG+TGG | 0.620989 | 8_4:-7348264 | Msa1310720:CDS |
AACTGCAACATGGGTCATGG+TGG | 0.626233 | 8_4:-7349010 | None:intergenic |
GGAAAGATTCTGCTATAATG+GGG | 0.642308 | 8_4:-7347838 | Msa1310720:CDS |
CTAGGGTCAATGTTCAGAAG+GGG | 0.653279 | 8_4:-7346024 | Msa1310720:CDS |
GATCACGATCATTCATCCAA+AGG | 0.657541 | 8_4:-7348483 | Msa1310720:CDS |
AAGATTCTGCTATAATGGGG+TGG | 0.665156 | 8_4:-7347835 | Msa1310720:CDS |
AACCAGAAGTGATCATCTGA+TGG | 0.668856 | 8_4:+7346705 | None:intergenic |
GATGAAAACCATCAATCACA+AGG | 0.702204 | 8_4:-7348022 | Msa1310720:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGAAAAAATTATAAGATAAA+AGG | + | chr8_4:7348124-7348143 | None:intergenic | 10.0% |
!!! | ACTTTTTTTTTTAATATTGT+AGG | - | chr8_4:7348612-7348631 | Msa1310720:CDS | 10.0% |
!!! | CTTTTTTTTTTAATATTGTA+GGG | - | chr8_4:7348613-7348632 | Msa1310720:CDS | 10.0% |
!!! | ATTAAAATTTATTTTGTTTG+TGG | + | chr8_4:7348716-7348735 | None:intergenic | 10.0% |
!!! | TTTGAAAATTTTGATATGTT+TGG | - | chr8_4:7346212-7346231 | Msa1310720:intron | 15.0% |
!! | AATACAAAATATGATTAAAG+TGG | + | chr8_4:7346671-7346690 | None:intergenic | 15.0% |
!!! | TGTAGTTAATTATATTTTAC+TGG | - | chr8_4:7347178-7347197 | Msa1310720:intron | 15.0% |
!! | AATAATAATCATATGTCTTA+AGG | + | chr8_4:7347741-7347760 | None:intergenic | 15.0% |
!! | AAATTATAAGATAAAAGGTT+TGG | + | chr8_4:7348119-7348138 | None:intergenic | 15.0% |
!!! | AATGAAGAAAATAAAAGTAT+AGG | + | chr8_4:7348417-7348436 | None:intergenic | 15.0% |
!!! | TAATTTTTTACAAATGTAGA+TGG | - | chr8_4:7348777-7348796 | Msa1310720:intron | 15.0% |
!!! | AATTTTTTACAAATGTAGAT+GGG | - | chr8_4:7348778-7348797 | Msa1310720:intron | 15.0% |
!! | TGTATTATGATGTTAATTTC+AGG | - | chr8_4:7346685-7346704 | Msa1310720:CDS | 20.0% |
!! | GTATTATGATGTTAATTTCA+GGG | - | chr8_4:7346686-7346705 | Msa1310720:CDS | 20.0% |
!! | GAACAAAAATAAAGATATGT+AGG | + | chr8_4:7346748-7346767 | None:intergenic | 20.0% |
!! | TTAACAAATTTGATCAGTTA+TGG | - | chr8_4:7346978-7346997 | Msa1310720:CDS | 20.0% |
!! | AAACTTTATAATATGCATAC+TGG | - | chr8_4:7347030-7347049 | Msa1310720:intron | 20.0% |
!!! | TCATTTTTCAAGCAATTTTA+TGG | - | chr8_4:7347247-7347266 | Msa1310720:intron | 20.0% |
!! | GAAACAGAATCAATAATATA+TGG | + | chr8_4:7347368-7347387 | None:intergenic | 20.0% |
!! | TACTTGTGAAAATTAAACTT+TGG | + | chr8_4:7347419-7347438 | None:intergenic | 20.0% |
!! | AATCTTCATCAGTAATTTAT+TGG | - | chr8_4:7347521-7347540 | Msa1310720:CDS | 20.0% |
!!! | AATTCACCACTTTATTTTAA+TGG | - | chr8_4:7347599-7347618 | Msa1310720:intron | 20.0% |
!!! | GTTTTAAAAATCAATCAGAA+CGG | + | chr8_4:7347847-7347866 | None:intergenic | 20.0% |
!!! | ACAGAAATCTTAATTTTGAT+TGG | + | chr8_4:7347960-7347979 | None:intergenic | 20.0% |
!! | AAAATTAAGATTTCTGTTCA+TGG | - | chr8_4:7347963-7347982 | Msa1310720:intron | 20.0% |
!!! | AAAAAAAAAGTGTAAGAAAG+AGG | + | chr8_4:7348603-7348622 | None:intergenic | 20.0% |
!!! | ACCTTCTTTGATTTTTTGTA+AGG | + | chr8_4:7346147-7346166 | None:intergenic | 25.0% |
! | TAAGAATAACAAAGCAAACA+AGG | + | chr8_4:7346174-7346193 | None:intergenic | 25.0% |
! | TTTCTAACTGTAACACAAAA+TGG | - | chr8_4:7346301-7346320 | Msa1310720:CDS | 25.0% |
! | TTCTAACTGTAACACAAAAT+GGG | - | chr8_4:7346302-7346321 | Msa1310720:CDS | 25.0% |
! | AACATGTAATTTCAATACCT+TGG | + | chr8_4:7346539-7346558 | None:intergenic | 25.0% |
!! | GGTATTGAAATTACATGTTA+TGG | - | chr8_4:7346540-7346559 | Msa1310720:intron | 25.0% |
! | AAACCTTGAACAAAATGTAA+AGG | + | chr8_4:7346567-7346586 | None:intergenic | 25.0% |
!!! | TGTGTTTTGACTATTGTTTT+TGG | - | chr8_4:7346791-7346810 | Msa1310720:CDS | 25.0% |
! | TTAATTTACCTTGTGATTGA+TGG | + | chr8_4:7346962-7346981 | None:intergenic | 25.0% |
!! | TTTATCAAGGATCATTTTAC+TGG | - | chr8_4:7347107-7347126 | Msa1310720:intron | 25.0% |
! | TAAGCTGAACAAAGAAAATT+TGG | + | chr8_4:7347547-7347566 | None:intergenic | 25.0% |
!!! | TTTATTTTAATGGTTGCAGT+TGG | - | chr8_4:7347609-7347628 | Msa1310720:intron | 25.0% |
!!! | TTTTTGTTGCTTAATGTCAA+TGG | - | chr8_4:7347656-7347675 | Msa1310720:intron | 25.0% |
! | TGTCTTAAGGTAGAAAATAT+AGG | + | chr8_4:7347728-7347747 | None:intergenic | 25.0% |
!!! | TCTCAAAAGAATTTTGGAAA+AGG | + | chr8_4:7348333-7348352 | None:intergenic | 25.0% |
!! | ATGCTATCTCAAAAGAATTT+TGG | + | chr8_4:7348339-7348358 | None:intergenic | 25.0% |
!!! | TTGAGATAGCATTCTTTTTT+TGG | - | chr8_4:7348347-7348366 | Msa1310720:intron | 25.0% |
!!! | TAGCATTCTTTTTTTGGATA+TGG | - | chr8_4:7348353-7348372 | Msa1310720:intron | 25.0% |
!!! | AGCATTCTTTTTTTGGATAT+GGG | - | chr8_4:7348354-7348373 | Msa1310720:intron | 25.0% |
! | TGTGTATCTTAGATAACATA+TGG | - | chr8_4:7348464-7348483 | Msa1310720:CDS | 25.0% |
! | TGGCTATAAATCATGTATAA+TGG | - | chr8_4:7348484-7348503 | Msa1310720:CDS | 25.0% |
! | GGCTATAAATCATGTATAAT+GGG | - | chr8_4:7348485-7348504 | Msa1310720:CDS | 25.0% |
! | AAACCAAATACATTATTCCA+AGG | - | chr8_4:7348510-7348529 | Msa1310720:CDS | 25.0% |
! | AACAATTGCATATAATGGTA+GGG | + | chr8_4:7348669-7348688 | None:intergenic | 25.0% |
! | TAACAATTGCATATAATGGT+AGG | + | chr8_4:7348670-7348689 | None:intergenic | 25.0% |
! | TGTGTAACAATTGCATATAA+TGG | + | chr8_4:7348674-7348693 | None:intergenic | 25.0% |
! | ATTATATGCAATTGTTACAC+AGG | - | chr8_4:7348673-7348692 | Msa1310720:CDS | 25.0% |
ATTTGCAATTTACACCTACA+TGG | - | chr8_4:7346009-7346028 | Msa1310720:CDS | 30.0% | |
TTTGCAATTTACACCTACAT+GGG | - | chr8_4:7346010-7346029 | Msa1310720:CDS | 30.0% | |
GCCTTACAAAAAATCAAAGA+AGG | - | chr8_4:7346143-7346162 | Msa1310720:CDS | 30.0% | |
!!! | TTATGCAGAGTTGATGATTT+TGG | - | chr8_4:7346264-7346283 | Msa1310720:intron | 30.0% |
!!! | TATGCAGAGTTGATGATTTT+GGG | - | chr8_4:7346265-7346284 | Msa1310720:intron | 30.0% |
ATATGAATAGTCCATTCTCT+TGG | + | chr8_4:7346346-7346365 | None:intergenic | 30.0% | |
AAAAGTCTGAAAATGTGACT+TGG | + | chr8_4:7346422-7346441 | None:intergenic | 30.0% | |
ATGATGTTAATTTCAGGGAA+AGG | - | chr8_4:7346691-7346710 | Msa1310720:CDS | 30.0% | |
!!! | GTTTTGACTATTGTTTTTGG+AGG | - | chr8_4:7346794-7346813 | Msa1310720:CDS | 30.0% |
!!! | GTCGTTTTTAATAGATTCGT+CGG | - | chr8_4:7346898-7346917 | Msa1310720:intron | 30.0% |
! | TCATCAACATGCTTTTATCA+AGG | - | chr8_4:7347094-7347113 | Msa1310720:intron | 30.0% |
!!! | AAGGATCATTTTACTGGTTT+TGG | - | chr8_4:7347113-7347132 | Msa1310720:intron | 30.0% |
!!! | AGGATCATTTTACTGGTTTT+GGG | - | chr8_4:7347114-7347133 | Msa1310720:intron | 30.0% |
! | ATTAAGGCTTGGTTTCATTA+AGG | - | chr8_4:7347297-7347316 | Msa1310720:intron | 30.0% |
GGTTCAATCATCATAGATAA+TGG | + | chr8_4:7347347-7347366 | None:intergenic | 30.0% | |
!! | TCTGTTTTAGACTCATTGTA+GGG | - | chr8_4:7347388-7347407 | Msa1310720:intron | 30.0% |
GATGATTTCAAGAAAGTTGT+TGG | - | chr8_4:7347458-7347477 | Msa1310720:intron | 30.0% | |
TCAAGAAAGTTGTTGGTATT+AGG | - | chr8_4:7347465-7347484 | Msa1310720:intron | 30.0% | |
CTGCAACCATTAAAATAAAG+TGG | + | chr8_4:7347608-7347627 | None:intergenic | 30.0% | |
!! | ATGAACAAAAGTACTAAGTC+TGG | + | chr8_4:7347689-7347708 | None:intergenic | 30.0% |
ATGAAGATACTTACAATGAC+AGG | + | chr8_4:7348027-7348046 | None:intergenic | 30.0% | |
AACAACTAATTCACCTTGTA+TGG | + | chr8_4:7348245-7348264 | None:intergenic | 30.0% | |
AAGCCTTGGAATAATGTATT+TGG | + | chr8_4:7348516-7348535 | None:intergenic | 30.0% | |
!! | ATTATTCCAAGGCTTGTTAT+GGG | - | chr8_4:7348521-7348540 | Msa1310720:CDS | 30.0% |
!!! | AAACAGACTCGTCATTTTTA+GGG | + | chr8_4:7349002-7349021 | None:intergenic | 30.0% |
GAACGTTCTCTTCATTATCT+TGG | - | chr8_4:7346080-7346099 | Msa1310720:CDS | 35.0% | |
TTCTCTTCATTATCTTGGCA+AGG | - | chr8_4:7346085-7346104 | Msa1310720:CDS | 35.0% | |
! | TTTTGTAAGGCTTCAAAGAG+TGG | + | chr8_4:7346134-7346153 | None:intergenic | 35.0% |
AAATTTGTGCTCCAAGAGAA+TGG | - | chr8_4:7346332-7346351 | Msa1310720:CDS | 35.0% | |
!!! | TCAGACTTTTTTCTCTTCCA+AGG | - | chr8_4:7346432-7346451 | Msa1310720:intron | 35.0% |
! | TTCTCTTCCAAGGATGTTTT+TGG | - | chr8_4:7346442-7346461 | Msa1310720:intron | 35.0% |
TCATCCAAAGGTGAAGAAAT+TGG | - | chr8_4:7346502-7346521 | Msa1310720:intron | 35.0% | |
GTATCCAATTTCTTCACCTT+TGG | + | chr8_4:7346509-7346528 | None:intergenic | 35.0% | |
! | GGTCCTTTACATTTTGTTCA+AGG | - | chr8_4:7346561-7346580 | Msa1310720:intron | 35.0% |
AATGCTTCCACAGATAATAG+AGG | + | chr8_4:7346719-7346738 | None:intergenic | 35.0% | |
! | GTTTTTAATAGATTCGTCGG+TGG | - | chr8_4:7346901-7346920 | Msa1310720:intron | 35.0% |
GATGAAAACCATCAATCACA+AGG | - | chr8_4:7346951-7346970 | Msa1310720:intron | 35.0% | |
TGGGAAAGATTCTGCTATAA+TGG | - | chr8_4:7347133-7347152 | Msa1310720:intron | 35.0% | |
GGGAAAGATTCTGCTATAAT+GGG | - | chr8_4:7347134-7347153 | Msa1310720:intron | 35.0% | |
GGAAAGATTCTGCTATAATG+GGG | - | chr8_4:7347135-7347154 | Msa1310720:intron | 35.0% | |
TTATGGATCTGTGACAAAGT+TGG | - | chr8_4:7347264-7347283 | Msa1310720:intron | 35.0% | |
AGTTGGACTATGTGACATTA+AGG | - | chr8_4:7347281-7347300 | Msa1310720:intron | 35.0% | |
!! | CTCTGTTTTAGACTCATTGT+AGG | - | chr8_4:7347387-7347406 | Msa1310720:intron | 35.0% |
!! | CTGTTTTAGACTCATTGTAG+GGG | - | chr8_4:7347389-7347408 | Msa1310720:intron | 35.0% |
TGAAATCATCTTCAAGTGCA+CGG | + | chr8_4:7347448-7347467 | None:intergenic | 35.0% | |
TTGGTATCTTTGGATCTTTG+TGG | - | chr8_4:7347628-7347647 | Msa1310720:intron | 35.0% | |
AGATTTCTGTTCATGGTTTC+AGG | - | chr8_4:7347970-7347989 | Msa1310720:intron | 35.0% | |
! | TTGTATGGCTGAATGCTTTT+CGG | + | chr8_4:7348230-7348249 | None:intergenic | 35.0% |
GGATCAAGTGAATCAAAAAG+AGG | + | chr8_4:7348312-7348331 | None:intergenic | 35.0% | |
! | GTTATCTAAGATACACAAGC+AGG | + | chr8_4:7348461-7348480 | None:intergenic | 35.0% |
!! | CATTATTCCAAGGCTTGTTA+TGG | - | chr8_4:7348520-7348539 | Msa1310720:CDS | 35.0% |
!! | TTATTCCAAGGCTTGTTATG+GGG | - | chr8_4:7348522-7348541 | Msa1310720:CDS | 35.0% |
TTGTACTTGATCGTCGAATA+TGG | + | chr8_4:7348821-7348840 | None:intergenic | 35.0% | |
CAAGTACAAACACGACTTAT+TGG | - | chr8_4:7348832-7348851 | Msa1310720:CDS | 35.0% | |
TACAAACACGACTTATTGGT+TGG | - | chr8_4:7348836-7348855 | Msa1310720:CDS | 35.0% | |
! | ACAAACACGACTTATTGGTT+GGG | - | chr8_4:7348837-7348856 | Msa1310720:CDS | 35.0% |
GCAAAGAAGAAAGGATTAAG+AGG | - | chr8_4:7348868-7348887 | Msa1310720:CDS | 35.0% | |
!!! | CAAACAGACTCGTCATTTTT+AGG | + | chr8_4:7349003-7349022 | None:intergenic | 35.0% |
! | GCTTCCTTGTAGTCTTAAAG+AGG | - | chr8_4:7346366-7346385 | Msa1310720:intron | 40.0% |
!! | TCGTCCTCTTTAAGACTACA+AGG | + | chr8_4:7346373-7346392 | None:intergenic | 40.0% |
GATCACGATCATTCATCCAA+AGG | - | chr8_4:7346490-7346509 | Msa1310720:CDS | 40.0% | |
AATTGGATACTGTGATGCCA+AGG | - | chr8_4:7346519-7346538 | Msa1310720:intron | 40.0% | |
!! | AAAGGTGCCTCTATTATCTG+TGG | - | chr8_4:7346709-7346728 | Msa1310720:CDS | 40.0% |
! | AAGATTCTGCTATAATGGGG+TGG | - | chr8_4:7347138-7347157 | Msa1310720:intron | 40.0% |
GACTATGTGACATTAAGGCT+TGG | - | chr8_4:7347286-7347305 | Msa1310720:intron | 40.0% | |
! | ATGGTTGCAGTTGGTATCTT+TGG | - | chr8_4:7347618-7347637 | Msa1310720:intron | 40.0% |
! | GTTTTACAAACCAAAGCGAC+CGG | - | chr8_4:7347773-7347792 | Msa1310720:intron | 40.0% |
! | TTCTGTTCATGGTTTCAGGT+TGG | - | chr8_4:7347974-7347993 | Msa1310720:intron | 40.0% |
!! | CAGGTTGGCACACATATTTT+TGG | - | chr8_4:7347989-7348008 | Msa1310720:intron | 40.0% |
TCTTAAGCTTCTTCTTGCTG+TGG | - | chr8_4:7348159-7348178 | Msa1310720:intron | 40.0% | |
! | CTTAAGCTTCTTCTTGCTGT+GGG | - | chr8_4:7348160-7348179 | Msa1310720:intron | 40.0% |
!! | GAAAAGCATTCAGCCATACA+AGG | - | chr8_4:7348229-7348248 | Msa1310720:CDS | 40.0% |
AACCATCAGATGATCACTTC+TGG | - | chr8_4:7348266-7348285 | Msa1310720:CDS | 40.0% | |
AACCAGAAGTGATCATCTGA+TGG | + | chr8_4:7348271-7348290 | None:intergenic | 40.0% | |
CTAAGATACACAAGCAGGTA+AGG | + | chr8_4:7348456-7348475 | None:intergenic | 40.0% | |
! | ACTTATTGGTTGGGCACAAA+AGG | - | chr8_4:7348846-7348865 | Msa1310720:CDS | 40.0% |
GCACAAAAGGCAAAGAAGAA+AGG | - | chr8_4:7348859-7348878 | Msa1310720:CDS | 40.0% | |
GTCCAAGGAAGTTCTCATAA+TGG | - | chr8_4:7348907-7348926 | Msa1310720:CDS | 40.0% | |
CACCATTATGAGAACTTCCT+TGG | + | chr8_4:7348912-7348931 | None:intergenic | 40.0% | |
CAAGGAAGTTCTCATAATGG+TGG | - | chr8_4:7348910-7348929 | Msa1310720:CDS | 40.0% | |
! | GAAGTACTAACGTTCAGCTA+GGG | - | chr8_4:7348932-7348951 | Msa1310720:CDS | 40.0% |
! | GACAATGGCATTGTTTTCTG+GGG | + | chr8_4:7348980-7348999 | None:intergenic | 40.0% |
! | GGACAATGGCATTGTTTTCT+GGG | + | chr8_4:7348981-7349000 | None:intergenic | 40.0% |
!!! | CTCGTCATTTTTAGGGACAA+TGG | + | chr8_4:7348995-7349014 | None:intergenic | 40.0% |
ACAAGAGCAACAACCCATGT+AGG | + | chr8_4:7346026-7346045 | None:intergenic | 45.0% | |
AGGCTTCAAAGAGTGGTTTC+TGG | + | chr8_4:7346127-7346146 | None:intergenic | 45.0% | |
AGCAGTGCCAAAAACATCCT+TGG | + | chr8_4:7346452-7346471 | None:intergenic | 45.0% | |
!!! | AGGATGTTTTTGGCACTGCT+AGG | - | chr8_4:7346452-7346471 | Msa1310720:CDS | 45.0% |
! | TTCTGCTATAATGGGGTGGT+TGG | - | chr8_4:7347142-7347161 | Msa1310720:intron | 45.0% |
TCAACGAGACTCTGATCAAC+CGG | + | chr8_4:7347795-7347814 | None:intergenic | 45.0% | |
TGATCAGAGTCTCGTTGAAC+TGG | - | chr8_4:7347797-7347816 | Msa1310720:intron | 45.0% | |
ATCAAAAAGAGGACGATGCG+AGG | + | chr8_4:7348301-7348320 | None:intergenic | 45.0% | |
AGTTACCCCATAACAAGCCT+TGG | + | chr8_4:7348530-7348549 | None:intergenic | 45.0% | |
GATAGCAACCATTCTGTCCA+AGG | - | chr8_4:7348892-7348911 | Msa1310720:CDS | 45.0% | |
GAGAACTTCCTTGGACAGAA+TGG | + | chr8_4:7348903-7348922 | None:intergenic | 45.0% | |
!! | GGAAGTACTAACGTTCAGCT+AGG | - | chr8_4:7348931-7348950 | Msa1310720:CDS | 45.0% |
AGCTAGGGTCAATGTTCAGA+AGG | - | chr8_4:7348947-7348966 | Msa1310720:CDS | 45.0% | |
GCTAGGGTCAATGTTCAGAA+GGG | - | chr8_4:7348948-7348967 | Msa1310720:CDS | 45.0% | |
CTAGGGTCAATGTTCAGAAG+GGG | - | chr8_4:7348949-7348968 | Msa1310720:CDS | 45.0% | |
! | GGGACAATGGCATTGTTTTC+TGG | + | chr8_4:7348982-7349001 | None:intergenic | 45.0% |
AAGAGAACGTTCCACAGCGA+AGG | + | chr8_4:7346072-7346091 | None:intergenic | 50.0% | |
GATCGTGATCGTCACCTAGA+AGG | + | chr8_4:7346480-7346499 | None:intergenic | 50.0% | |
TAATGCAGCGCCAGAACGAA+CGG | - | chr8_4:7347055-7347074 | Msa1310720:intron | 50.0% | |
! | GCTATAATGGGGTGGTTGGT+AGG | - | chr8_4:7347146-7347165 | Msa1310720:intron | 50.0% |
GGTGGAGGAGAAGCTGAAGA+AGG | - | chr8_4:7345981-7346000 | Msa1310720:CDS | 55.0% | |
AGCGCCAGAACGAACGGATA+CGG | - | chr8_4:7347061-7347080 | Msa1310720:intron | 55.0% | |
GTCACCGTATCCGTTCGTTC+TGG | + | chr8_4:7347068-7347087 | None:intergenic | 55.0% | |
CTCTGATCAACCGGTCGCTT+TGG | + | chr8_4:7347786-7347805 | None:intergenic | 55.0% | |
! | CGTCGCTGTTTCCTTCGCTG+TGG | - | chr8_4:7346058-7346077 | Msa1310720:CDS | 60.0% |
! | AGATTCGTCGGTGGAAGCGC+TGG | - | chr8_4:7346910-7346929 | Msa1310720:intron | 60.0% |
!! | GATTCGTCGGTGGAAGCGCT+GGG | - | chr8_4:7346911-7346930 | Msa1310720:intron | 60.0% |
GGCACTGCTAGGCGCCTTCT+AGG | - | chr8_4:7346463-7346482 | Msa1310720:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_4 | gene | 7345972 | 7349023 | 7345972 | ID=Msa1310720;Name=Msa1310720 |
chr8_4 | mRNA | 7345972 | 7349023 | 7345972 | ID=Msa1310720-mRNA-1;Parent=Msa1310720;Name=Msa1310720-mRNA-1;_AED=0.24;_eAED=0.24;_QI=0|0.16|0.07|1|1|1|13|0|520 |
chr8_4 | exon | 7348831 | 7349023 | 7348831 | ID=Msa1310720-mRNA-1:exon:2664;Parent=Msa1310720-mRNA-1 |
chr8_4 | exon | 7348455 | 7348723 | 7348455 | ID=Msa1310720-mRNA-1:exon:2663;Parent=Msa1310720-mRNA-1 |
chr8_4 | exon | 7348172 | 7348288 | 7348172 | ID=Msa1310720-mRNA-1:exon:2662;Parent=Msa1310720-mRNA-1 |
chr8_4 | exon | 7348023 | 7348083 | 7348023 | ID=Msa1310720-mRNA-1:exon:2661;Parent=Msa1310720-mRNA-1 |
chr8_4 | exon | 7347832 | 7347932 | 7347832 | ID=Msa1310720-mRNA-1:exon:2660;Parent=Msa1310720-mRNA-1 |
chr8_4 | exon | 7347677 | 7347751 | 7347677 | ID=Msa1310720-mRNA-1:exon:2659;Parent=Msa1310720-mRNA-1 |
chr8_4 | exon | 7347509 | 7347597 | 7347509 | ID=Msa1310720-mRNA-1:exon:2658;Parent=Msa1310720-mRNA-1 |
chr8_4 | exon | 7347318 | 7347367 | 7347318 | ID=Msa1310720-mRNA-1:exon:2657;Parent=Msa1310720-mRNA-1 |
chr8_4 | exon | 7346963 | 7347003 | 7346963 | ID=Msa1310720-mRNA-1:exon:2656;Parent=Msa1310720-mRNA-1 |
chr8_4 | exon | 7346620 | 7346829 | 7346620 | ID=Msa1310720-mRNA-1:exon:2655;Parent=Msa1310720-mRNA-1 |
chr8_4 | exon | 7346452 | 7346519 | 7346452 | ID=Msa1310720-mRNA-1:exon:2654;Parent=Msa1310720-mRNA-1 |
chr8_4 | exon | 7346301 | 7346361 | 7346301 | ID=Msa1310720-mRNA-1:exon:2653;Parent=Msa1310720-mRNA-1 |
chr8_4 | exon | 7345972 | 7346199 | 7345972 | ID=Msa1310720-mRNA-1:exon:2652;Parent=Msa1310720-mRNA-1 |
chr8_4 | CDS | 7348831 | 7349023 | 7348831 | ID=Msa1310720-mRNA-1:cds;Parent=Msa1310720-mRNA-1 |
chr8_4 | CDS | 7348455 | 7348723 | 7348455 | ID=Msa1310720-mRNA-1:cds;Parent=Msa1310720-mRNA-1 |
chr8_4 | CDS | 7348172 | 7348288 | 7348172 | ID=Msa1310720-mRNA-1:cds;Parent=Msa1310720-mRNA-1 |
chr8_4 | CDS | 7348023 | 7348083 | 7348023 | ID=Msa1310720-mRNA-1:cds;Parent=Msa1310720-mRNA-1 |
chr8_4 | CDS | 7347832 | 7347932 | 7347832 | ID=Msa1310720-mRNA-1:cds;Parent=Msa1310720-mRNA-1 |
chr8_4 | CDS | 7347677 | 7347751 | 7347677 | ID=Msa1310720-mRNA-1:cds;Parent=Msa1310720-mRNA-1 |
chr8_4 | CDS | 7347509 | 7347597 | 7347509 | ID=Msa1310720-mRNA-1:cds;Parent=Msa1310720-mRNA-1 |
chr8_4 | CDS | 7347318 | 7347367 | 7347318 | ID=Msa1310720-mRNA-1:cds;Parent=Msa1310720-mRNA-1 |
chr8_4 | CDS | 7346963 | 7347003 | 7346963 | ID=Msa1310720-mRNA-1:cds;Parent=Msa1310720-mRNA-1 |
chr8_4 | CDS | 7346620 | 7346829 | 7346620 | ID=Msa1310720-mRNA-1:cds;Parent=Msa1310720-mRNA-1 |
chr8_4 | CDS | 7346452 | 7346519 | 7346452 | ID=Msa1310720-mRNA-1:cds;Parent=Msa1310720-mRNA-1 |
chr8_4 | CDS | 7346301 | 7346361 | 7346301 | ID=Msa1310720-mRNA-1:cds;Parent=Msa1310720-mRNA-1 |
chr8_4 | CDS | 7345972 | 7346199 | 7345972 | ID=Msa1310720-mRNA-1:cds;Parent=Msa1310720-mRNA-1 |
Gene Sequence |
Protein sequence |