AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1272670


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1272670 MtrunA17_Chr8g0337941 94.882 508 26 0 13 520 13 520 0.0 999
Msa1272670 MtrunA17_Chr8g0337931 78.831 496 97 3 30 520 15 507 0.0 801
Msa1272670 MtrunA17_Chr3g0145831 68.340 518 141 7 12 519 12 516 0.0 691
Msa1272670 MtrunA17_Chr2g0291441 53.187 455 186 6 6 460 2 429 1.00e-157 457
Msa1272670 MtrunA17_Chr3g0144171 43.952 496 253 9 4 496 3 476 4.80e-130 389
Msa1272670 MtrunA17_Chr2g0326301 42.443 483 252 6 11 482 7 474 8.79e-127 382
Msa1272670 MtrunA17_Chr8g0370181 43.552 473 246 5 1 473 27 478 9.66e-126 379
Msa1272670 MtrunA17_Chr5g0407381 42.043 509 261 7 5 503 14 498 2.13e-125 378
Msa1272670 MtrunA17_Chr6g0462051 41.736 484 264 9 14 493 11 480 1.68e-123 373
Msa1272670 MtrunA17_Chr2g0317801 42.251 471 247 8 9 477 6 453 7.85e-118 358
Msa1272670 MtrunA17_Chr3g0144201 38.667 525 273 8 10 492 9 526 6.42e-112 343
Msa1272670 MtrunA17_Chr4g0040611 35.590 517 285 11 6 517 2 475 7.70e-104 322
Msa1272670 MtrunA17_Chr2g0277471 36.326 479 276 7 9 482 6 460 5.67e-89 283
Msa1272670 MtrunA17_Chr5g0405641 34.509 397 237 11 9 400 7 385 2.31e-53 185
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1272670 AT4G02600.2 64.684 538 156 8 1 517 1 525 0.0 696
Msa1272670 AT4G02600.1 64.684 538 156 8 1 517 1 525 0.0 696
Msa1272670 AT2G44110.1 55.534 515 203 8 8 520 2 492 0.0 575
Msa1272670 AT2G44110.2 55.534 515 204 8 8 520 2 493 0.0 575
Msa1272670 AT4G24250.1 54.637 496 197 7 6 496 2 474 8.85e-176 504
Msa1272670 AT4G24250.2 55.529 425 161 7 6 425 2 403 5.21e-148 430
Msa1272670 AT2G39200.1 42.363 491 263 6 14 497 8 485 1.35e-128 387
Msa1272670 AT2G33670.1 44.372 462 231 5 13 474 16 451 1.90e-128 384
Msa1272670 AT1G61560.1 39.847 522 284 8 14 518 10 518 4.62e-127 383
Msa1272670 AT1G61560.4 40.076 524 280 10 14 518 10 518 6.09e-126 380
Msa1272670 AT2G17430.1 42.380 479 240 7 3 474 18 467 1.23e-124 375
Msa1272670 AT1G11310.1 42.540 496 263 9 14 497 10 495 1.71e-124 376
Msa1272670 AT1G42560.1 44.156 462 232 7 17 474 19 458 6.75e-121 363
Msa1272670 AT2G17480.1 40.649 524 267 8 14 517 41 540 2.16e-119 363
Msa1272670 AT1G61560.10 42.539 449 237 6 14 454 10 445 1.68e-118 357
Msa1272670 AT5G53760.2 42.213 488 258 9 1 480 1 472 6.93e-118 359
Msa1272670 AT5G53760.1 42.213 488 258 9 1 480 1 472 6.93e-118 359
Msa1272670 AT1G26700.1 41.909 482 255 9 7 480 3 467 2.40e-117 357
Msa1272670 AT1G26700.2 41.909 482 255 9 7 480 3 467 2.40e-117 357
Msa1272670 AT5G65970.1 41.901 463 235 6 4 466 28 456 6.36e-114 349
Msa1272670 AT3G45290.1 38.542 480 263 5 5 484 10 457 6.47e-112 342
Msa1272670 AT1G61560.2 38.806 469 257 8 67 518 1 456 7.82e-107 329
Msa1272670 AT1G61560.3 38.806 469 257 8 67 518 1 456 7.82e-107 329
Msa1272670 AT1G61560.7 41.527 419 225 5 14 425 10 415 5.16e-106 323
Msa1272670 AT1G61560.9 41.527 419 225 5 14 425 10 415 5.16e-106 323
Msa1272670 AT1G11310.3 41.761 443 236 9 67 497 1 433 2.65e-105 325
Msa1272670 AT1G61560.6 42.365 406 212 6 14 412 10 400 8.88e-105 320
Msa1272670 AT1G61560.8 42.365 406 212 6 14 412 10 400 8.88e-105 320
Msa1272670 AT1G61560.5 42.365 406 212 6 14 412 10 400 8.88e-105 320
Msa1272670 AT1G11310.2 42.482 419 224 7 14 425 10 418 1.54e-104 320
Msa1272670 AT1G11000.1 36.076 474 267 5 9 474 6 451 2.27e-88 283
Msa1272670 AT1G11000.3 36.076 474 267 5 9 474 6 451 2.27e-88 283
Msa1272670 AT1G42560.2 41.146 384 200 6 17 396 19 380 9.18e-86 270
Msa1272670 AT5G65970.2 40.800 375 188 6 4 378 28 368 8.52e-84 268
Msa1272670 AT1G11000.2 35.765 425 237 5 9 425 6 402 1.57e-72 237

Find 88 sgRNAs with CRISPR-Local

Find 165 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTCTAACTGTAACACAAAA+TGG 0.132671 8_3:-6443637 Msa1272670:CDS
ATGCTATCTCAAAAGAATTT+TGG 0.172414 8_3:+6441600 None:intergenic
TTATGCAGAGTTGATGATTT+TGG 0.195716 8_3:-6443674 Msa1272670:intron
ATGGTTGCAGTTGGTATCTT+TGG 0.222072 8_3:-6442318 Msa1272670:intron
CAAGTACAAACACGACTTAT+TGG 0.251745 8_3:-6441114 Msa1272670:CDS
TGGCTATAAATCATGTATAA+TGG 0.276113 8_3:-6441462 Msa1272670:CDS
GGCACTGCTAGGCGCCTTCT+AGG 0.278687 8_3:-6443475 Msa1272670:CDS
ATTAAGGCTTGGTTTCATTA+AGG 0.279842 8_3:-6442641 Msa1272670:intron
TGGGAAAGATTCTGCTATAA+TGG 0.288863 8_3:-6442805 Msa1272670:CDS
TCATCCAAAGGTGAAGAAAT+TGG 0.289923 8_3:-6443436 Msa1272670:CDS
CATTATTCCAAGGCTTGTTA+TGG 0.297843 8_3:-6441426 Msa1272670:CDS
AGGCTTCAAAGAGTGGTTTC+TGG 0.304493 8_3:+6443814 None:intergenic
TCAAGAAAGTTGTTGGTATT+AGG 0.310088 8_3:-6442473 Msa1272670:intron
GTATCCAATTTCTTCACCTT+TGG 0.311680 8_3:+6443432 None:intergenic
AACAACTAATTCACCTTGTA+TGG 0.320206 8_3:+6441694 None:intergenic
GGGAAAGATTCTGCTATAAT+GGG 0.325346 8_3:-6442804 Msa1272670:CDS
TTGTACTTGATCGTCGAATA+TGG 0.329062 8_3:+6441128 None:intergenic
AGTTGGACTATGTGACATTA+AGG 0.334578 8_3:-6442657 Msa1272670:CDS
AAGCCTTGGAATAATGTATC+TGG 0.334997 8_3:+6441433 None:intergenic
TTAATTTACCTTGTGATTGA+TGG 0.340185 8_3:+6442979 None:intergenic
GGCTATAAATCATGTATAAT+GGG 0.355523 8_3:-6441461 Msa1272670:CDS
CACCATTATGAGAACTTCCT+TGG 0.355982 8_3:+6441037 None:intergenic
GAACGTTCTCTTCATTATCT+TGG 0.368049 8_3:-6443858 Msa1272670:CDS
GATGATTTCAAGAAAGTTGT+TGG 0.369692 8_3:-6442480 Msa1272670:CDS
AGATTCGTCGGTGGAAGCGC+TGG 0.380741 8_3:-6443028 Msa1272670:CDS
ATTATTCCAAGGCTTGTTAT+GGG 0.386543 8_3:-6441425 Msa1272670:CDS
GATCGTGATCGTCACCTAGA+AGG 0.405673 8_3:+6443461 None:intergenic
GCAAAGAAGAAAGGATTAAG+AGG 0.413779 8_3:-6441078 Msa1272670:CDS
AACCATCAGATGATCACTTC+TGG 0.416963 8_3:-6441670 Msa1272670:CDS
CTTAAGCTTCTTCTTGCTGT+GGG 0.424296 8_3:-6441776 Msa1272670:intron
TACTTGTGAAAATTAAACTT+TGG 0.435190 8_3:+6442522 None:intergenic
TTGGTATCTTTGGATCTTTG+TGG 0.439724 8_3:-6442308 Msa1272670:CDS
TGTGTAACAATTGCATATAA+TGG 0.443851 8_3:+6441275 None:intergenic
ACTTATTGGTTGGGCACAAA+AGG 0.448832 8_3:-6441100 Msa1272670:CDS
TTCTAACTGTAACACAAAAT+GGG 0.451535 8_3:-6443636 Msa1272670:CDS
TACAAACACGACTTATTGGT+TGG 0.457492 8_3:-6441110 Msa1272670:CDS
GTCACCGTATCCGTTCGTTC+TGG 0.462789 8_3:+6442873 None:intergenic
TCTTAAGCTTCTTCTTGCTG+TGG 0.475997 8_3:-6441777 Msa1272670:intron
GTCCAAGGAAGTTCTCATAA+TGG 0.479254 8_3:-6441039 Msa1272670:CDS
ATTTGCAATTTACACCTACA+TGG 0.479370 8_3:-6443929 Msa1272670:CDS
GCTTCCTTGTAGTCTTAAAG+AGG 0.480638 8_3:-6443572 Msa1272670:CDS
AAATTTGTGCTCCAAGAGAA+TGG 0.480671 8_3:-6443606 Msa1272670:CDS
TGTGTATCTTAGATAACATA+TGG 0.489266 8_3:-6441482 Msa1272670:intron
TTATGGATCTGTGACAAAGT+TGG 0.492609 8_3:-6442674 Msa1272670:CDS
TTCTCTTCATTATCTTGGCA+AGG 0.493187 8_3:-6443853 Msa1272670:CDS
TAACAATTGCATATAATGGT+AGG 0.495285 8_3:+6441279 None:intergenic
TTCTGCTATAATGGGGTGGT+TGG 0.507298 8_3:-6442796 Msa1272670:intron
GAGAACTTCCTTGGACAGAA+TGG 0.508131 8_3:+6441046 None:intergenic
GACTATGTGACATTAAGGCT+TGG 0.511293 8_3:-6442652 Msa1272670:CDS
TGCAACATGGGTCATGGTGG+AGG 0.522794 8_3:-6443972 None:intergenic
GATTCGTCGGTGGAAGCGCT+GGG 0.523542 8_3:-6443027 Msa1272670:CDS
TAATGCAGCGCCAGAACGAA+CGG 0.528204 8_3:-6442883 Msa1272670:intron
ATATGAATAGTCCATTCTCT+TGG 0.528672 8_3:+6443595 None:intergenic
GGAAGTACTAACGTTCAGCT+AGG 0.531495 8_3:-6441015 Msa1272670:CDS
ACAAACACGACTTATTGGTT+GGG 0.532061 8_3:-6441109 Msa1272670:CDS
ATGAAGATACTTACAATGAC+AGG 0.540056 8_3:+6441912 None:intergenic
GCACAAAAGGCAAAGAAGAA+AGG 0.540578 8_3:-6441087 Msa1272670:CDS
TCGTCCTCTTTAAGACTACA+AGG 0.541149 8_3:+6443568 None:intergenic
TGAAATCATCTTCAAGTGCA+CGG 0.542872 8_3:+6442493 None:intergenic
AGCTAGGGTCAATGTTCAGA+AGG 0.544634 8_3:-6440999 Msa1272670:CDS
AGTTACCCCATAACAAGCCT+TGG 0.548441 8_3:+6441419 None:intergenic
AGCGCCAGAACGAACGGATA+CGG 0.549065 8_3:-6442877 Msa1272670:CDS
AAACCAGATACATTATTCCA+AGG 0.562273 8_3:-6441436 Msa1272670:CDS
GGTGGAGGAGAAGCTGAAGA+AGG 0.568786 8_3:-6443957 Msa1272670:CDS
CACAACTGCAACATGGGTCA+TGG 0.569291 8_3:-6443978 None:intergenic
GAAAAGCATTCAGCCATACA+AGG 0.571272 8_3:-6441707 Msa1272670:CDS
ATTATATGCAATTGTTACAC+AGG 0.579900 8_3:-6441273 Msa1272670:intron
AAGAGAACGTTCCACAGCGA+AGG 0.580982 8_3:+6443869 None:intergenic
GATAGCAACCATTCTGTCCA+AGG 0.585088 8_3:-6441054 Msa1272670:CDS
AACAATTGCATATAATGGTA+GGG 0.585156 8_3:+6441280 None:intergenic
AATGCTTCCACAGATAATAG+AGG 0.590589 8_3:+6443222 None:intergenic
TTTGCAATTTACACCTACAT+GGG 0.594564 8_3:-6443928 Msa1272670:CDS
GCTAGGGTCAATGTTCAGAA+GGG 0.597481 8_3:-6440998 Msa1272670:CDS
CAAGGAAGTTCTCATAATGG+TGG 0.601661 8_3:-6441036 Msa1272670:CDS
AAAAGTCTGAAAGTGTGACT+TGG 0.602564 8_3:+6443519 None:intergenic
CGTCGCTGTTTCCTTCGCTG+TGG 0.603794 8_3:-6443880 Msa1272670:CDS
ACAAGAGCAACAACCCATGT+AGG 0.607296 8_3:+6443915 None:intergenic
TTATTCCAAGGCTTGTTATG+GGG 0.609416 8_3:-6441424 Msa1272670:intron
AATTGGATACTGTGATGCCA+AGG 0.611719 8_3:-6443419 Msa1272670:intron
GAAGTACTAACGTTCAGCTA+GGG 0.618696 8_3:-6441014 Msa1272670:CDS
AAAGGTGCCTCTATTATCTG+TGG 0.620989 8_3:-6443229 Msa1272670:CDS
AACTGCAACATGGGTCATGG+TGG 0.626233 8_3:-6443975 None:intergenic
GGAAAGATTCTGCTATAATG+GGG 0.642308 8_3:-6442803 Msa1272670:CDS
CTAGGGTCAATGTTCAGAAG+GGG 0.653279 8_3:-6440997 Msa1272670:CDS
GATCACGATCATTCATCCAA+AGG 0.657541 8_3:-6443448 Msa1272670:CDS
AAGATTCTGCTATAATGGGG+TGG 0.665156 8_3:-6442800 Msa1272670:CDS
AACCAGAAGTGATCATCTGA+TGG 0.668856 8_3:+6441668 None:intergenic
GATGAAAACCATCAATCACA+AGG 0.702204 8_3:-6442987 Msa1272670:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGAAAAAATTATAAGATAAA+AGG + chr8_3:6443099-6443118 None:intergenic 10.0%
!!! ATTAAAATTTATTTTGTTTG+TGG + chr8_3:6443681-6443700 None:intergenic 10.0%
!!! TTTGAAAATTTTGATATGTT+TGG - chr8_3:6441185-6441204 Msa1272670:intron 15.0%
!! AATACAAAATATGATTAAAG+TGG + chr8_3:6441644-6441663 None:intergenic 15.0%
!! AATAATAATCATATGTCTTA+AGG + chr8_3:6442716-6442735 None:intergenic 15.0%
!! AAATTATAAGATAAAAGGTT+TGG + chr8_3:6443094-6443113 None:intergenic 15.0%
!!! ACTTTTTTCTTTAATATTGT+AGG - chr8_3:6443577-6443596 Msa1272670:CDS 15.0%
!!! CTTTTTTCTTTAATATTGTA+GGG - chr8_3:6443578-6443597 Msa1272670:CDS 15.0%
!!! TAATTTTTTACAAATGTAGA+TGG - chr8_3:6443742-6443761 Msa1272670:intron 15.0%
!!! AATTTTTTACAAATGTAGAT+GGG - chr8_3:6443743-6443762 Msa1272670:intron 15.0%
!! TGTATTATGATGTTAATTTC+AGG - chr8_3:6441658-6441677 Msa1272670:CDS 20.0%
!! GTATTATGATGTTAATTTCA+GGG - chr8_3:6441659-6441678 Msa1272670:CDS 20.0%
!! GAACAAAAATAAAGATATGT+AGG + chr8_3:6441721-6441740 None:intergenic 20.0%
!! TTAACAAATTTGATCAGTTA+TGG - chr8_3:6441951-6441970 Msa1272670:intron 20.0%
!! AAACTTTATAATATGCATAC+TGG - chr8_3:6442003-6442022 Msa1272670:intron 20.0%
!!! TGTAGTTCATTATATTTTAC+TGG - chr8_3:6442151-6442170 Msa1272670:intron 20.0%
!!! TCATTTTTCAAGCAATTTTA+TGG - chr8_3:6442220-6442239 Msa1272670:intron 20.0%
!! GAAACAGAATCAATAATATA+TGG + chr8_3:6442341-6442360 None:intergenic 20.0%
!! TACTTGTGAAAATTAAACTT+TGG + chr8_3:6442392-6442411 None:intergenic 20.0%
!! AATCTTCATCAGTAATTTAT+TGG - chr8_3:6442494-6442513 Msa1272670:CDS 20.0%
!!! TTCACGACTTTATTTTATTA+TGG - chr8_3:6442574-6442593 Msa1272670:intron 20.0%
!!! GTTTTAAAAATCAATCAGAA+CGG + chr8_3:6442822-6442841 None:intergenic 20.0%
!!! ACAGAAATCTTAATTTTGAT+TGG + chr8_3:6442935-6442954 None:intergenic 20.0%
!! AAAATTAAGATTTCTGTTCA+TGG - chr8_3:6442938-6442957 Msa1272670:intron 20.0%
!!! AAGAGAGAAAATAAAAGTAT+AGG + chr8_3:6443392-6443411 None:intergenic 20.0%
!!! ACCTTCTTTGATTTTTTGTA+AGG + chr8_3:6441120-6441139 None:intergenic 25.0%
! TAAGAATAACAAAGCAAACA+AGG + chr8_3:6441147-6441166 None:intergenic 25.0%
! TTTCTAACTGTAACACAAAA+TGG - chr8_3:6441274-6441293 Msa1272670:CDS 25.0%
! TTCTAACTGTAACACAAAAT+GGG - chr8_3:6441275-6441294 Msa1272670:CDS 25.0%
! AACATGTAATTTCAATACCT+TGG + chr8_3:6441512-6441531 None:intergenic 25.0%
!! GGTATTGAAATTACATGTTA+TGG - chr8_3:6441513-6441532 Msa1272670:intron 25.0%
! AAACCTTGAACAAAATGTAA+AGG + chr8_3:6441540-6441559 None:intergenic 25.0%
!!! TGTGTTTTGACTATTGTTTT+TGG - chr8_3:6441764-6441783 Msa1272670:CDS 25.0%
! TTAATTTACCTTGTGATTGA+TGG + chr8_3:6441935-6441954 None:intergenic 25.0%
!! TTTATCAAGGATCATTTTAC+TGG - chr8_3:6442080-6442099 Msa1272670:intron 25.0%
! TAAGCTGAACAAAGAAAATT+TGG + chr8_3:6442520-6442539 None:intergenic 25.0%
!! TATTTTATTATGGTTGCAGT+TGG - chr8_3:6442584-6442603 Msa1272670:intron 25.0%
!!! TTTTTGTTGCTTAATGTCAA+TGG - chr8_3:6442631-6442650 Msa1272670:intron 25.0%
! TGTCTTAAGGTAGAAAATAT+AGG + chr8_3:6442703-6442722 None:intergenic 25.0%
!!! TCTCAAAAGAATTTTGGAAA+AGG + chr8_3:6443308-6443327 None:intergenic 25.0%
!! ATGCTATCTCAAAAGAATTT+TGG + chr8_3:6443314-6443333 None:intergenic 25.0%
!!! TTGAGATAGCATTCTTTTTT+TGG - chr8_3:6443322-6443341 Msa1272670:intron 25.0%
!!! TAGCATTCTTTTTTTGGATA+TGG - chr8_3:6443328-6443347 Msa1272670:intron 25.0%
!!! AGCATTCTTTTTTTGGATAT+GGG - chr8_3:6443329-6443348 Msa1272670:intron 25.0%
! TGTGTATCTTAGATAACATA+TGG - chr8_3:6443429-6443448 Msa1272670:CDS 25.0%
! TGGCTATAAATCATGTATAA+TGG - chr8_3:6443449-6443468 Msa1272670:CDS 25.0%
! GGCTATAAATCATGTATAAT+GGG - chr8_3:6443450-6443469 Msa1272670:CDS 25.0%
!! AAGAAAAAAGTGTAAGAAAG+AGG + chr8_3:6443568-6443587 None:intergenic 25.0%
! AACAATTGCATATAATGGTA+GGG + chr8_3:6443634-6443653 None:intergenic 25.0%
! TAACAATTGCATATAATGGT+AGG + chr8_3:6443635-6443654 None:intergenic 25.0%
! TGTGTAACAATTGCATATAA+TGG + chr8_3:6443639-6443658 None:intergenic 25.0%
! ATTATATGCAATTGTTACAC+AGG - chr8_3:6443638-6443657 Msa1272670:CDS 25.0%
ATTTGCAATTTACACCTACA+TGG - chr8_3:6440982-6441001 Msa1272670:CDS 30.0%
TTTGCAATTTACACCTACAT+GGG - chr8_3:6440983-6441002 Msa1272670:CDS 30.0%
GCCTTACAAAAAATCAAAGA+AGG - chr8_3:6441116-6441135 Msa1272670:CDS 30.0%
!!! TTATGCAGAGTTGATGATTT+TGG - chr8_3:6441237-6441256 Msa1272670:intron 30.0%
!!! TATGCAGAGTTGATGATTTT+GGG - chr8_3:6441238-6441257 Msa1272670:intron 30.0%
ATATGAATAGTCCATTCTCT+TGG + chr8_3:6441319-6441338 None:intergenic 30.0%
ATGATGTTAATTTCAGGGAA+AGG - chr8_3:6441664-6441683 Msa1272670:CDS 30.0%
!!! GTTTTGACTATTGTTTTTGG+AGG - chr8_3:6441767-6441786 Msa1272670:CDS 30.0%
!!! GTCGTTTTTAATAGATTCGT+CGG - chr8_3:6441871-6441890 Msa1272670:intron 30.0%
! TCATCAACATGCTTTTATCA+AGG - chr8_3:6442067-6442086 Msa1272670:intron 30.0%
!!! AAGGATCATTTTACTGGTTT+TGG - chr8_3:6442086-6442105 Msa1272670:intron 30.0%
!!! AGGATCATTTTACTGGTTTT+GGG - chr8_3:6442087-6442106 Msa1272670:intron 30.0%
! ATTAAGGCTTGGTTTCATTA+AGG - chr8_3:6442270-6442289 Msa1272670:intron 30.0%
GGTTCAATCATCATAGATAA+TGG + chr8_3:6442320-6442339 None:intergenic 30.0%
!! TCTGTTTTAGACTCATTGTA+GGG - chr8_3:6442361-6442380 Msa1272670:intron 30.0%
GATGATTTCAAGAAAGTTGT+TGG - chr8_3:6442431-6442450 Msa1272670:intron 30.0%
TCAAGAAAGTTGTTGGTATT+AGG - chr8_3:6442438-6442457 Msa1272670:intron 30.0%
!! ATGAACAAAAGTACTAAGTC+TGG + chr8_3:6442664-6442683 None:intergenic 30.0%
GTGACTTCTATTGTTCATAT+AGG + chr8_3:6442898-6442917 None:intergenic 30.0%
ATGAAGATACTTACAATGAC+AGG + chr8_3:6443002-6443021 None:intergenic 30.0%
AACAACTAATTCACCTTGTA+TGG + chr8_3:6443220-6443239 None:intergenic 30.0%
AAACCAGATACATTATTCCA+AGG - chr8_3:6443475-6443494 Msa1272670:CDS 30.0%
!! ATTATTCCAAGGCTTGTTAT+GGG - chr8_3:6443486-6443505 Msa1272670:CDS 30.0%
!!! AAACAGACTCGTCATTTTTA+GGG + chr8_3:6443967-6443986 None:intergenic 30.0%
GAACGTTCTCTTCATTATCT+TGG - chr8_3:6441053-6441072 Msa1272670:CDS 35.0%
TTCTCTTCATTATCTTGGCA+AGG - chr8_3:6441058-6441077 Msa1272670:CDS 35.0%
! TTTTGTAAGGCTTCAAAGAG+TGG + chr8_3:6441107-6441126 None:intergenic 35.0%
AAATTTGTGCTCCAAGAGAA+TGG - chr8_3:6441305-6441324 Msa1272670:CDS 35.0%
! AAAAGTCTGAAAGTGTGACT+TGG + chr8_3:6441395-6441414 None:intergenic 35.0%
!!! TCAGACTTTTTTCTCTTCCA+AGG - chr8_3:6441405-6441424 Msa1272670:intron 35.0%
! TTCTCTTCCAAGGATGTTTT+TGG - chr8_3:6441415-6441434 Msa1272670:intron 35.0%
TCATCCAAAGGTGAAGAAAT+TGG - chr8_3:6441475-6441494 Msa1272670:intron 35.0%
GTATCCAATTTCTTCACCTT+TGG + chr8_3:6441482-6441501 None:intergenic 35.0%
! GGTCCTTTACATTTTGTTCA+AGG - chr8_3:6441534-6441553 Msa1272670:intron 35.0%
AATGCTTCCACAGATAATAG+AGG + chr8_3:6441692-6441711 None:intergenic 35.0%
! GTTTTTAATAGATTCGTCGG+TGG - chr8_3:6441874-6441893 Msa1272670:intron 35.0%
GATGAAAACCATCAATCACA+AGG - chr8_3:6441924-6441943 Msa1272670:intron 35.0%
TGGGAAAGATTCTGCTATAA+TGG - chr8_3:6442106-6442125 Msa1272670:intron 35.0%
GGGAAAGATTCTGCTATAAT+GGG - chr8_3:6442107-6442126 Msa1272670:intron 35.0%
GGAAAGATTCTGCTATAATG+GGG - chr8_3:6442108-6442127 Msa1272670:intron 35.0%
TTATGGATCTGTGACAAAGT+TGG - chr8_3:6442237-6442256 Msa1272670:intron 35.0%
AGTTGGACTATGTGACATTA+AGG - chr8_3:6442254-6442273 Msa1272670:intron 35.0%
!! CTCTGTTTTAGACTCATTGT+AGG - chr8_3:6442360-6442379 Msa1272670:intron 35.0%
!! CTGTTTTAGACTCATTGTAG+GGG - chr8_3:6442362-6442381 Msa1272670:intron 35.0%
TGAAATCATCTTCAAGTGCA+CGG + chr8_3:6442421-6442440 None:intergenic 35.0%
TTGGTATCTTTGGATCTTTG+TGG - chr8_3:6442603-6442622 Msa1272670:intron 35.0%
AGATTTCTGTTCATGGTTTC+AGG - chr8_3:6442945-6442964 Msa1272670:intron 35.0%
! TTGTATGGCTGAATGCTTTT+CGG + chr8_3:6443205-6443224 None:intergenic 35.0%
GGATCAAGTGAATCAAAAAG+AGG + chr8_3:6443287-6443306 None:intergenic 35.0%
! GTTATCTAAGATACACAAGC+AGG + chr8_3:6443426-6443445 None:intergenic 35.0%
AAGCCTTGGAATAATGTATC+TGG + chr8_3:6443481-6443500 None:intergenic 35.0%
!! CATTATTCCAAGGCTTGTTA+TGG - chr8_3:6443485-6443504 Msa1272670:CDS 35.0%
!! TTATTCCAAGGCTTGTTATG+GGG - chr8_3:6443487-6443506 Msa1272670:CDS 35.0%
TTGTACTTGATCGTCGAATA+TGG + chr8_3:6443786-6443805 None:intergenic 35.0%
CAAGTACAAACACGACTTAT+TGG - chr8_3:6443797-6443816 Msa1272670:CDS 35.0%
TACAAACACGACTTATTGGT+TGG - chr8_3:6443801-6443820 Msa1272670:CDS 35.0%
! ACAAACACGACTTATTGGTT+GGG - chr8_3:6443802-6443821 Msa1272670:CDS 35.0%
GCAAAGAAGAAAGGATTAAG+AGG - chr8_3:6443833-6443852 Msa1272670:CDS 35.0%
!!! CAAACAGACTCGTCATTTTT+AGG + chr8_3:6443968-6443987 None:intergenic 35.0%
! GCTTCCTTGTAGTCTTAAAG+AGG - chr8_3:6441339-6441358 Msa1272670:intron 40.0%
!! TCGTCCTCTTTAAGACTACA+AGG + chr8_3:6441346-6441365 None:intergenic 40.0%
GATCACGATCATTCATCCAA+AGG - chr8_3:6441463-6441482 Msa1272670:CDS 40.0%
AATTGGATACTGTGATGCCA+AGG - chr8_3:6441492-6441511 Msa1272670:intron 40.0%
!! AAAGGTGCCTCTATTATCTG+TGG - chr8_3:6441682-6441701 Msa1272670:CDS 40.0%
! AAGATTCTGCTATAATGGGG+TGG - chr8_3:6442111-6442130 Msa1272670:intron 40.0%
GACTATGTGACATTAAGGCT+TGG - chr8_3:6442259-6442278 Msa1272670:intron 40.0%
! ATGGTTGCAGTTGGTATCTT+TGG - chr8_3:6442593-6442612 Msa1272670:intron 40.0%
! GTTTTACAAACCAAAGCGAC+CGG - chr8_3:6442748-6442767 Msa1272670:intron 40.0%
! TTCTGTTCATGGTTTCAGGT+TGG - chr8_3:6442949-6442968 Msa1272670:intron 40.0%
!! CAGGTTGGCACACATATTTT+TGG - chr8_3:6442964-6442983 Msa1272670:intron 40.0%
TCTTAAGCTTCTTCTTGCTG+TGG - chr8_3:6443134-6443153 Msa1272670:intron 40.0%
! CTTAAGCTTCTTCTTGCTGT+GGG - chr8_3:6443135-6443154 Msa1272670:intron 40.0%
!! GAAAAGCATTCAGCCATACA+AGG - chr8_3:6443204-6443223 Msa1272670:CDS 40.0%
AACCATCAGATGATCACTTC+TGG - chr8_3:6443241-6443260 Msa1272670:intron 40.0%
AACCAGAAGTGATCATCTGA+TGG + chr8_3:6443246-6443265 None:intergenic 40.0%
CTAAGATACACAAGCAGGTA+AGG + chr8_3:6443421-6443440 None:intergenic 40.0%
! ACTTATTGGTTGGGCACAAA+AGG - chr8_3:6443811-6443830 Msa1272670:CDS 40.0%
GCACAAAAGGCAAAGAAGAA+AGG - chr8_3:6443824-6443843 Msa1272670:CDS 40.0%
GTCCAAGGAAGTTCTCATAA+TGG - chr8_3:6443872-6443891 Msa1272670:CDS 40.0%
CACCATTATGAGAACTTCCT+TGG + chr8_3:6443877-6443896 None:intergenic 40.0%
CAAGGAAGTTCTCATAATGG+TGG - chr8_3:6443875-6443894 Msa1272670:CDS 40.0%
! GAAGTACTAACGTTCAGCTA+GGG - chr8_3:6443897-6443916 Msa1272670:CDS 40.0%
! GACAATGGCATTGTTTTCTG+GGG + chr8_3:6443945-6443964 None:intergenic 40.0%
! GGACAATGGCATTGTTTTCT+GGG + chr8_3:6443946-6443965 None:intergenic 40.0%
!!! CTCGTCATTTTTAGGGACAA+TGG + chr8_3:6443960-6443979 None:intergenic 40.0%
ACAAGAGCAACAACCCATGT+AGG + chr8_3:6440999-6441018 None:intergenic 45.0%
AGGCTTCAAAGAGTGGTTTC+TGG + chr8_3:6441100-6441119 None:intergenic 45.0%
AGCAGTGCCAAAAACATCCT+TGG + chr8_3:6441425-6441444 None:intergenic 45.0%
!!! AGGATGTTTTTGGCACTGCT+AGG - chr8_3:6441425-6441444 Msa1272670:CDS 45.0%
! TTCTGCTATAATGGGGTGGT+TGG - chr8_3:6442115-6442134 Msa1272670:intron 45.0%
TCAACGAGACTCTGATCAAC+CGG + chr8_3:6442770-6442789 None:intergenic 45.0%
TGATCAGAGTCTCGTTGAAC+TGG - chr8_3:6442772-6442791 Msa1272670:intron 45.0%
ATCAAAAAGAGGACGATGCG+AGG + chr8_3:6443276-6443295 None:intergenic 45.0%
AGTTACCCCATAACAAGCCT+TGG + chr8_3:6443495-6443514 None:intergenic 45.0%
GATAGCAACCATTCTGTCCA+AGG - chr8_3:6443857-6443876 Msa1272670:CDS 45.0%
GAGAACTTCCTTGGACAGAA+TGG + chr8_3:6443868-6443887 None:intergenic 45.0%
!! GGAAGTACTAACGTTCAGCT+AGG - chr8_3:6443896-6443915 Msa1272670:CDS 45.0%
AGCTAGGGTCAATGTTCAGA+AGG - chr8_3:6443912-6443931 Msa1272670:CDS 45.0%
GCTAGGGTCAATGTTCAGAA+GGG - chr8_3:6443913-6443932 Msa1272670:CDS 45.0%
CTAGGGTCAATGTTCAGAAG+GGG - chr8_3:6443914-6443933 Msa1272670:CDS 45.0%
! GGGACAATGGCATTGTTTTC+TGG + chr8_3:6443947-6443966 None:intergenic 45.0%
AAGAGAACGTTCCACAGCGA+AGG + chr8_3:6441045-6441064 None:intergenic 50.0%
GATCGTGATCGTCACCTAGA+AGG + chr8_3:6441453-6441472 None:intergenic 50.0%
TAATGCAGCGCCAGAACGAA+CGG - chr8_3:6442028-6442047 Msa1272670:intron 50.0%
! GCTATAATGGGGTGGTTGGT+AGG - chr8_3:6442119-6442138 Msa1272670:intron 50.0%
GGTGGAGGAGAAGCTGAAGA+AGG - chr8_3:6440954-6440973 Msa1272670:CDS 55.0%
AGCGCCAGAACGAACGGATA+CGG - chr8_3:6442034-6442053 Msa1272670:intron 55.0%
GTCACCGTATCCGTTCGTTC+TGG + chr8_3:6442041-6442060 None:intergenic 55.0%
CTCTGATCAACCGGTCGCTT+TGG + chr8_3:6442761-6442780 None:intergenic 55.0%
! CGTCGCTGTTTCCTTCGCTG+TGG - chr8_3:6441031-6441050 Msa1272670:CDS 60.0%
! AGATTCGTCGGTGGAAGCGC+TGG - chr8_3:6441883-6441902 Msa1272670:intron 60.0%
!! GATTCGTCGGTGGAAGCGCT+GGG - chr8_3:6441884-6441903 Msa1272670:intron 60.0%
GGCACTGCTAGGCGCCTTCT+AGG - chr8_3:6441436-6441455 Msa1272670:CDS 65.0%
Chromosome Type Strat End Strand Name
chr8_3 gene 6440945 6443988 6440945 ID=Msa1272670;Name=Msa1272670
chr8_3 mRNA 6440945 6443988 6440945 ID=Msa1272670-mRNA-1;Parent=Msa1272670;Name=Msa1272670-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.16|0.07|1|1|1|13|0|520
chr8_3 exon 6443796 6443988 6443796 ID=Msa1272670-mRNA-1:exon:2386;Parent=Msa1272670-mRNA-1
chr8_3 exon 6443420 6443688 6443420 ID=Msa1272670-mRNA-1:exon:2385;Parent=Msa1272670-mRNA-1
chr8_3 exon 6443137 6443253 6443137 ID=Msa1272670-mRNA-1:exon:2384;Parent=Msa1272670-mRNA-1
chr8_3 exon 6442988 6443048 6442988 ID=Msa1272670-mRNA-1:exon:2383;Parent=Msa1272670-mRNA-1
chr8_3 exon 6442797 6442897 6442797 ID=Msa1272670-mRNA-1:exon:2382;Parent=Msa1272670-mRNA-1
chr8_3 exon 6442642 6442716 6442642 ID=Msa1272670-mRNA-1:exon:2381;Parent=Msa1272670-mRNA-1
chr8_3 exon 6442474 6442562 6442474 ID=Msa1272670-mRNA-1:exon:2380;Parent=Msa1272670-mRNA-1
chr8_3 exon 6442281 6442330 6442281 ID=Msa1272670-mRNA-1:exon:2379;Parent=Msa1272670-mRNA-1
chr8_3 exon 6441926 6441966 6441926 ID=Msa1272670-mRNA-1:exon:2378;Parent=Msa1272670-mRNA-1
chr8_3 exon 6441583 6441792 6441583 ID=Msa1272670-mRNA-1:exon:2377;Parent=Msa1272670-mRNA-1
chr8_3 exon 6441425 6441492 6441425 ID=Msa1272670-mRNA-1:exon:2376;Parent=Msa1272670-mRNA-1
chr8_3 exon 6441274 6441334 6441274 ID=Msa1272670-mRNA-1:exon:2375;Parent=Msa1272670-mRNA-1
chr8_3 exon 6440945 6441172 6440945 ID=Msa1272670-mRNA-1:exon:2374;Parent=Msa1272670-mRNA-1
chr8_3 CDS 6443796 6443988 6443796 ID=Msa1272670-mRNA-1:cds;Parent=Msa1272670-mRNA-1
chr8_3 CDS 6443420 6443688 6443420 ID=Msa1272670-mRNA-1:cds;Parent=Msa1272670-mRNA-1
chr8_3 CDS 6443137 6443253 6443137 ID=Msa1272670-mRNA-1:cds;Parent=Msa1272670-mRNA-1
chr8_3 CDS 6442988 6443048 6442988 ID=Msa1272670-mRNA-1:cds;Parent=Msa1272670-mRNA-1
chr8_3 CDS 6442797 6442897 6442797 ID=Msa1272670-mRNA-1:cds;Parent=Msa1272670-mRNA-1
chr8_3 CDS 6442642 6442716 6442642 ID=Msa1272670-mRNA-1:cds;Parent=Msa1272670-mRNA-1
chr8_3 CDS 6442474 6442562 6442474 ID=Msa1272670-mRNA-1:cds;Parent=Msa1272670-mRNA-1
chr8_3 CDS 6442281 6442330 6442281 ID=Msa1272670-mRNA-1:cds;Parent=Msa1272670-mRNA-1
chr8_3 CDS 6441926 6441966 6441926 ID=Msa1272670-mRNA-1:cds;Parent=Msa1272670-mRNA-1
chr8_3 CDS 6441583 6441792 6441583 ID=Msa1272670-mRNA-1:cds;Parent=Msa1272670-mRNA-1
chr8_3 CDS 6441425 6441492 6441425 ID=Msa1272670-mRNA-1:cds;Parent=Msa1272670-mRNA-1
chr8_3 CDS 6441274 6441334 6441274 ID=Msa1272670-mRNA-1:cds;Parent=Msa1272670-mRNA-1
chr8_3 CDS 6440945 6441172 6440945 ID=Msa1272670-mRNA-1:cds;Parent=Msa1272670-mRNA-1
Gene Sequence

>Msa1272670

ATGGGTCATGGTGGAGGAGAAGCTGAAGAAGGTAGTGATTTGCAATTTACACCTACATGGGTTGTTGCTCTTGTTTGCACTGTCATCGTCGCTGTTTCCTTCGCTGTGGAACGTTCTCTTCATTATCTTGGCAAGGTTCTTAAGAAGAAAAACCAGAAACCACTCTTTGAAGCCTTACAAAAAATCAAAGAAGAGTTGATGATTTTGGGTTTTATTTCACTGTTTCTAACTGTAACACAAAATGGGATAACGAAAATTTGTGCTCCAAGAGAATGGACTATTCATATGCTTCCTTGTAGTCTTAAAGAGGACGATGAATTTAAAGAAACAAAATTATCATCCAAGTCACACTTTCAGACTTTTTTCTCTTCCAAGGATGTTTTTGGCACTGCTAGGCGCCTTCTAGGTGACGATCACGATCATTCATCCAAAGGTGAAGAAATTGGATACTGTGATGCCAAGGGAAAGGTGCCTCTATTATCTGTGGAAGCATTGCATCACCTACATATCTTTATTTTTGTTCTAGCTGTTGTTCATGTGACTTCATGTGTTTTGACTATTGTTTTTGGAGGATTAAATATTCGTCGGTGGAAGCGCTGGGAAGACTCAATTGTTGCAGATGAAAACCATCAATCACAAGCGCCAGAACGAACGGATACGGTGACTCATGTTCATCAACATGCTTTTATCAAGGATCATTTTACTGGTTTTGGGAAAGATTCTGCTATAATGGGGTGGTTGAAATCATTTTTCAAGCAATTTTATGGATCTGTGACAAAGTTGGACTATGTGACATTAAGGCTTGGTTTCATTAAGACTCATTGTAGGGGAAATCCAAAGTTTAATTTTCACAAGTACATGAACCGTGCACTTGAAGATGATTTCAAGAAAGTTGTTGGTATTAGTTGGTATCTTTGGATCTTTGTGGTCATATTTTTGTTGCTTAATGTCAATGGTTGGCACACATATTTTTGGATTGCTTTCATTCCTGTCATTCTTCTTCTTGCTGTGGGAACAAAGCTTGAACATGTAATAATTCAATTAGCACATGAAGTAGCCGAAAAGCATTCAGCCATACAAGGTGAATTAGTTGTTCAACCATCAGATGATCACTTCTGGTTTCATCGTCCTCGCATCGTCCTCTTTTTGATTCACTTGATCCTTTTCCAAAATTCTTTTGAGATAGCATTCTTTTTTTGGATATGGATAACATATGGCTATAAATCATGTATAATGGGACAAACCAGATACATTATTCCAAGGCTTGTTATGGGGGTATTTATTCAAGTACTATGTAGTTATAGTACCCTACCATTATATGCAATTGTTACACAGATGGGAACTCACTTTAAGAGATCCATATTCGACGATCAAGTACAAACACGACTTATTGGTTGGGCACAAAAGGCAAAGAAGAAAGGATTAAGAGGTGATAGCAACCATTCTGTCCAAGGAAGTTCTCATAATGGTGGAAGTACTAACGTTCAGCTAGGGTCAATGTTCAGAAGGGGAGCTGCCCCAGAAAACAATGCCATTGTCCCTAAAAATGACGAGTCTGTTTGA

Protein sequence

>Msa1272670

MGHGGGEAEEGSDLQFTPTWVVALVCTVIVAVSFAVERSLHYLGKVLKKKNQKPLFEALQKIKEELMILGFISLFLTVTQNGITKICAPREWTIHMLPCSLKEDDEFKETKLSSKSHFQTFFSSKDVFGTARRLLGDDHDHSSKGEEIGYCDAKGKVPLLSVEALHHLHIFIFVLAVVHVTSCVLTIVFGGLNIRRWKRWEDSIVADENHQSQAPERTDTVTHVHQHAFIKDHFTGFGKDSAIMGWLKSFFKQFYGSVTKLDYVTLRLGFIKTHCRGNPKFNFHKYMNRALEDDFKKVVGISWYLWIFVVIFLLLNVNGWHTYFWIAFIPVILLLAVGTKLEHVIIQLAHEVAEKHSAIQGELVVQPSDDHFWFHRPRIVLFLIHLILFQNSFEIAFFFWIWITYGYKSCIMGQTRYIIPRLVMGVFIQVLCSYSTLPLYAIVTQMGTHFKRSIFDDQVQTRLIGWAQKAKKKGLRGDSNHSVQGSSHNGGSTNVQLGSMFRRGAAPENNAIVPKNDESV*