Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1272670 | XP_013444041.1 | 94.882 | 508 | 26 | 0 | 13 | 520 | 13 | 520 | 0.0 | 999 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1272670 | sp|O49621|MLO1_ARATH | 64.684 | 538 | 156 | 8 | 1 | 517 | 1 | 525 | 0.0 | 696 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1272670 | G7ZWP9 | 94.882 | 508 | 26 | 0 | 13 | 520 | 13 | 520 | 0.0 | 999 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1272670 | Msa1310720 | 0.885819 | 5.849812e-72 | -8.615850e-47 |
Msa1082500 | Msa1272670 | 0.804339 | 2.265719e-49 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1272670 | MtrunA17_Chr8g0337941 | 94.882 | 508 | 26 | 0 | 13 | 520 | 13 | 520 | 0.0 | 999 |
Msa1272670 | MtrunA17_Chr8g0337931 | 78.831 | 496 | 97 | 3 | 30 | 520 | 15 | 507 | 0.0 | 801 |
Msa1272670 | MtrunA17_Chr3g0145831 | 68.340 | 518 | 141 | 7 | 12 | 519 | 12 | 516 | 0.0 | 691 |
Msa1272670 | MtrunA17_Chr2g0291441 | 53.187 | 455 | 186 | 6 | 6 | 460 | 2 | 429 | 1.00e-157 | 457 |
Msa1272670 | MtrunA17_Chr3g0144171 | 43.952 | 496 | 253 | 9 | 4 | 496 | 3 | 476 | 4.80e-130 | 389 |
Msa1272670 | MtrunA17_Chr2g0326301 | 42.443 | 483 | 252 | 6 | 11 | 482 | 7 | 474 | 8.79e-127 | 382 |
Msa1272670 | MtrunA17_Chr8g0370181 | 43.552 | 473 | 246 | 5 | 1 | 473 | 27 | 478 | 9.66e-126 | 379 |
Msa1272670 | MtrunA17_Chr5g0407381 | 42.043 | 509 | 261 | 7 | 5 | 503 | 14 | 498 | 2.13e-125 | 378 |
Msa1272670 | MtrunA17_Chr6g0462051 | 41.736 | 484 | 264 | 9 | 14 | 493 | 11 | 480 | 1.68e-123 | 373 |
Msa1272670 | MtrunA17_Chr2g0317801 | 42.251 | 471 | 247 | 8 | 9 | 477 | 6 | 453 | 7.85e-118 | 358 |
Msa1272670 | MtrunA17_Chr3g0144201 | 38.667 | 525 | 273 | 8 | 10 | 492 | 9 | 526 | 6.42e-112 | 343 |
Msa1272670 | MtrunA17_Chr4g0040611 | 35.590 | 517 | 285 | 11 | 6 | 517 | 2 | 475 | 7.70e-104 | 322 |
Msa1272670 | MtrunA17_Chr2g0277471 | 36.326 | 479 | 276 | 7 | 9 | 482 | 6 | 460 | 5.67e-89 | 283 |
Msa1272670 | MtrunA17_Chr5g0405641 | 34.509 | 397 | 237 | 11 | 9 | 400 | 7 | 385 | 2.31e-53 | 185 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1272670 | AT4G02600.2 | 64.684 | 538 | 156 | 8 | 1 | 517 | 1 | 525 | 0.0 | 696 |
Msa1272670 | AT4G02600.1 | 64.684 | 538 | 156 | 8 | 1 | 517 | 1 | 525 | 0.0 | 696 |
Msa1272670 | AT2G44110.1 | 55.534 | 515 | 203 | 8 | 8 | 520 | 2 | 492 | 0.0 | 575 |
Msa1272670 | AT2G44110.2 | 55.534 | 515 | 204 | 8 | 8 | 520 | 2 | 493 | 0.0 | 575 |
Msa1272670 | AT4G24250.1 | 54.637 | 496 | 197 | 7 | 6 | 496 | 2 | 474 | 8.85e-176 | 504 |
Msa1272670 | AT4G24250.2 | 55.529 | 425 | 161 | 7 | 6 | 425 | 2 | 403 | 5.21e-148 | 430 |
Msa1272670 | AT2G39200.1 | 42.363 | 491 | 263 | 6 | 14 | 497 | 8 | 485 | 1.35e-128 | 387 |
Msa1272670 | AT2G33670.1 | 44.372 | 462 | 231 | 5 | 13 | 474 | 16 | 451 | 1.90e-128 | 384 |
Msa1272670 | AT1G61560.1 | 39.847 | 522 | 284 | 8 | 14 | 518 | 10 | 518 | 4.62e-127 | 383 |
Msa1272670 | AT1G61560.4 | 40.076 | 524 | 280 | 10 | 14 | 518 | 10 | 518 | 6.09e-126 | 380 |
Msa1272670 | AT2G17430.1 | 42.380 | 479 | 240 | 7 | 3 | 474 | 18 | 467 | 1.23e-124 | 375 |
Msa1272670 | AT1G11310.1 | 42.540 | 496 | 263 | 9 | 14 | 497 | 10 | 495 | 1.71e-124 | 376 |
Msa1272670 | AT1G42560.1 | 44.156 | 462 | 232 | 7 | 17 | 474 | 19 | 458 | 6.75e-121 | 363 |
Msa1272670 | AT2G17480.1 | 40.649 | 524 | 267 | 8 | 14 | 517 | 41 | 540 | 2.16e-119 | 363 |
Msa1272670 | AT1G61560.10 | 42.539 | 449 | 237 | 6 | 14 | 454 | 10 | 445 | 1.68e-118 | 357 |
Msa1272670 | AT5G53760.2 | 42.213 | 488 | 258 | 9 | 1 | 480 | 1 | 472 | 6.93e-118 | 359 |
Msa1272670 | AT5G53760.1 | 42.213 | 488 | 258 | 9 | 1 | 480 | 1 | 472 | 6.93e-118 | 359 |
Msa1272670 | AT1G26700.1 | 41.909 | 482 | 255 | 9 | 7 | 480 | 3 | 467 | 2.40e-117 | 357 |
Msa1272670 | AT1G26700.2 | 41.909 | 482 | 255 | 9 | 7 | 480 | 3 | 467 | 2.40e-117 | 357 |
Msa1272670 | AT5G65970.1 | 41.901 | 463 | 235 | 6 | 4 | 466 | 28 | 456 | 6.36e-114 | 349 |
Msa1272670 | AT3G45290.1 | 38.542 | 480 | 263 | 5 | 5 | 484 | 10 | 457 | 6.47e-112 | 342 |
Msa1272670 | AT1G61560.2 | 38.806 | 469 | 257 | 8 | 67 | 518 | 1 | 456 | 7.82e-107 | 329 |
Msa1272670 | AT1G61560.3 | 38.806 | 469 | 257 | 8 | 67 | 518 | 1 | 456 | 7.82e-107 | 329 |
Msa1272670 | AT1G61560.7 | 41.527 | 419 | 225 | 5 | 14 | 425 | 10 | 415 | 5.16e-106 | 323 |
Msa1272670 | AT1G61560.9 | 41.527 | 419 | 225 | 5 | 14 | 425 | 10 | 415 | 5.16e-106 | 323 |
Msa1272670 | AT1G11310.3 | 41.761 | 443 | 236 | 9 | 67 | 497 | 1 | 433 | 2.65e-105 | 325 |
Msa1272670 | AT1G61560.6 | 42.365 | 406 | 212 | 6 | 14 | 412 | 10 | 400 | 8.88e-105 | 320 |
Msa1272670 | AT1G61560.8 | 42.365 | 406 | 212 | 6 | 14 | 412 | 10 | 400 | 8.88e-105 | 320 |
Msa1272670 | AT1G61560.5 | 42.365 | 406 | 212 | 6 | 14 | 412 | 10 | 400 | 8.88e-105 | 320 |
Msa1272670 | AT1G11310.2 | 42.482 | 419 | 224 | 7 | 14 | 425 | 10 | 418 | 1.54e-104 | 320 |
Msa1272670 | AT1G11000.1 | 36.076 | 474 | 267 | 5 | 9 | 474 | 6 | 451 | 2.27e-88 | 283 |
Msa1272670 | AT1G11000.3 | 36.076 | 474 | 267 | 5 | 9 | 474 | 6 | 451 | 2.27e-88 | 283 |
Msa1272670 | AT1G42560.2 | 41.146 | 384 | 200 | 6 | 17 | 396 | 19 | 380 | 9.18e-86 | 270 |
Msa1272670 | AT5G65970.2 | 40.800 | 375 | 188 | 6 | 4 | 378 | 28 | 368 | 8.52e-84 | 268 |
Msa1272670 | AT1G11000.2 | 35.765 | 425 | 237 | 5 | 9 | 425 | 6 | 402 | 1.57e-72 | 237 |
Find 88 sgRNAs with CRISPR-Local
Find 165 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTTCTAACTGTAACACAAAA+TGG | 0.132671 | 8_3:-6443637 | Msa1272670:CDS |
ATGCTATCTCAAAAGAATTT+TGG | 0.172414 | 8_3:+6441600 | None:intergenic |
TTATGCAGAGTTGATGATTT+TGG | 0.195716 | 8_3:-6443674 | Msa1272670:intron |
ATGGTTGCAGTTGGTATCTT+TGG | 0.222072 | 8_3:-6442318 | Msa1272670:intron |
CAAGTACAAACACGACTTAT+TGG | 0.251745 | 8_3:-6441114 | Msa1272670:CDS |
TGGCTATAAATCATGTATAA+TGG | 0.276113 | 8_3:-6441462 | Msa1272670:CDS |
GGCACTGCTAGGCGCCTTCT+AGG | 0.278687 | 8_3:-6443475 | Msa1272670:CDS |
ATTAAGGCTTGGTTTCATTA+AGG | 0.279842 | 8_3:-6442641 | Msa1272670:intron |
TGGGAAAGATTCTGCTATAA+TGG | 0.288863 | 8_3:-6442805 | Msa1272670:CDS |
TCATCCAAAGGTGAAGAAAT+TGG | 0.289923 | 8_3:-6443436 | Msa1272670:CDS |
CATTATTCCAAGGCTTGTTA+TGG | 0.297843 | 8_3:-6441426 | Msa1272670:CDS |
AGGCTTCAAAGAGTGGTTTC+TGG | 0.304493 | 8_3:+6443814 | None:intergenic |
TCAAGAAAGTTGTTGGTATT+AGG | 0.310088 | 8_3:-6442473 | Msa1272670:intron |
GTATCCAATTTCTTCACCTT+TGG | 0.311680 | 8_3:+6443432 | None:intergenic |
AACAACTAATTCACCTTGTA+TGG | 0.320206 | 8_3:+6441694 | None:intergenic |
GGGAAAGATTCTGCTATAAT+GGG | 0.325346 | 8_3:-6442804 | Msa1272670:CDS |
TTGTACTTGATCGTCGAATA+TGG | 0.329062 | 8_3:+6441128 | None:intergenic |
AGTTGGACTATGTGACATTA+AGG | 0.334578 | 8_3:-6442657 | Msa1272670:CDS |
AAGCCTTGGAATAATGTATC+TGG | 0.334997 | 8_3:+6441433 | None:intergenic |
TTAATTTACCTTGTGATTGA+TGG | 0.340185 | 8_3:+6442979 | None:intergenic |
GGCTATAAATCATGTATAAT+GGG | 0.355523 | 8_3:-6441461 | Msa1272670:CDS |
CACCATTATGAGAACTTCCT+TGG | 0.355982 | 8_3:+6441037 | None:intergenic |
GAACGTTCTCTTCATTATCT+TGG | 0.368049 | 8_3:-6443858 | Msa1272670:CDS |
GATGATTTCAAGAAAGTTGT+TGG | 0.369692 | 8_3:-6442480 | Msa1272670:CDS |
AGATTCGTCGGTGGAAGCGC+TGG | 0.380741 | 8_3:-6443028 | Msa1272670:CDS |
ATTATTCCAAGGCTTGTTAT+GGG | 0.386543 | 8_3:-6441425 | Msa1272670:CDS |
GATCGTGATCGTCACCTAGA+AGG | 0.405673 | 8_3:+6443461 | None:intergenic |
GCAAAGAAGAAAGGATTAAG+AGG | 0.413779 | 8_3:-6441078 | Msa1272670:CDS |
AACCATCAGATGATCACTTC+TGG | 0.416963 | 8_3:-6441670 | Msa1272670:CDS |
CTTAAGCTTCTTCTTGCTGT+GGG | 0.424296 | 8_3:-6441776 | Msa1272670:intron |
TACTTGTGAAAATTAAACTT+TGG | 0.435190 | 8_3:+6442522 | None:intergenic |
TTGGTATCTTTGGATCTTTG+TGG | 0.439724 | 8_3:-6442308 | Msa1272670:CDS |
TGTGTAACAATTGCATATAA+TGG | 0.443851 | 8_3:+6441275 | None:intergenic |
ACTTATTGGTTGGGCACAAA+AGG | 0.448832 | 8_3:-6441100 | Msa1272670:CDS |
TTCTAACTGTAACACAAAAT+GGG | 0.451535 | 8_3:-6443636 | Msa1272670:CDS |
TACAAACACGACTTATTGGT+TGG | 0.457492 | 8_3:-6441110 | Msa1272670:CDS |
GTCACCGTATCCGTTCGTTC+TGG | 0.462789 | 8_3:+6442873 | None:intergenic |
TCTTAAGCTTCTTCTTGCTG+TGG | 0.475997 | 8_3:-6441777 | Msa1272670:intron |
GTCCAAGGAAGTTCTCATAA+TGG | 0.479254 | 8_3:-6441039 | Msa1272670:CDS |
ATTTGCAATTTACACCTACA+TGG | 0.479370 | 8_3:-6443929 | Msa1272670:CDS |
GCTTCCTTGTAGTCTTAAAG+AGG | 0.480638 | 8_3:-6443572 | Msa1272670:CDS |
AAATTTGTGCTCCAAGAGAA+TGG | 0.480671 | 8_3:-6443606 | Msa1272670:CDS |
TGTGTATCTTAGATAACATA+TGG | 0.489266 | 8_3:-6441482 | Msa1272670:intron |
TTATGGATCTGTGACAAAGT+TGG | 0.492609 | 8_3:-6442674 | Msa1272670:CDS |
TTCTCTTCATTATCTTGGCA+AGG | 0.493187 | 8_3:-6443853 | Msa1272670:CDS |
TAACAATTGCATATAATGGT+AGG | 0.495285 | 8_3:+6441279 | None:intergenic |
TTCTGCTATAATGGGGTGGT+TGG | 0.507298 | 8_3:-6442796 | Msa1272670:intron |
GAGAACTTCCTTGGACAGAA+TGG | 0.508131 | 8_3:+6441046 | None:intergenic |
GACTATGTGACATTAAGGCT+TGG | 0.511293 | 8_3:-6442652 | Msa1272670:CDS |
TGCAACATGGGTCATGGTGG+AGG | 0.522794 | 8_3:-6443972 | None:intergenic |
GATTCGTCGGTGGAAGCGCT+GGG | 0.523542 | 8_3:-6443027 | Msa1272670:CDS |
TAATGCAGCGCCAGAACGAA+CGG | 0.528204 | 8_3:-6442883 | Msa1272670:intron |
ATATGAATAGTCCATTCTCT+TGG | 0.528672 | 8_3:+6443595 | None:intergenic |
GGAAGTACTAACGTTCAGCT+AGG | 0.531495 | 8_3:-6441015 | Msa1272670:CDS |
ACAAACACGACTTATTGGTT+GGG | 0.532061 | 8_3:-6441109 | Msa1272670:CDS |
ATGAAGATACTTACAATGAC+AGG | 0.540056 | 8_3:+6441912 | None:intergenic |
GCACAAAAGGCAAAGAAGAA+AGG | 0.540578 | 8_3:-6441087 | Msa1272670:CDS |
TCGTCCTCTTTAAGACTACA+AGG | 0.541149 | 8_3:+6443568 | None:intergenic |
TGAAATCATCTTCAAGTGCA+CGG | 0.542872 | 8_3:+6442493 | None:intergenic |
AGCTAGGGTCAATGTTCAGA+AGG | 0.544634 | 8_3:-6440999 | Msa1272670:CDS |
AGTTACCCCATAACAAGCCT+TGG | 0.548441 | 8_3:+6441419 | None:intergenic |
AGCGCCAGAACGAACGGATA+CGG | 0.549065 | 8_3:-6442877 | Msa1272670:CDS |
AAACCAGATACATTATTCCA+AGG | 0.562273 | 8_3:-6441436 | Msa1272670:CDS |
GGTGGAGGAGAAGCTGAAGA+AGG | 0.568786 | 8_3:-6443957 | Msa1272670:CDS |
CACAACTGCAACATGGGTCA+TGG | 0.569291 | 8_3:-6443978 | None:intergenic |
GAAAAGCATTCAGCCATACA+AGG | 0.571272 | 8_3:-6441707 | Msa1272670:CDS |
ATTATATGCAATTGTTACAC+AGG | 0.579900 | 8_3:-6441273 | Msa1272670:intron |
AAGAGAACGTTCCACAGCGA+AGG | 0.580982 | 8_3:+6443869 | None:intergenic |
GATAGCAACCATTCTGTCCA+AGG | 0.585088 | 8_3:-6441054 | Msa1272670:CDS |
AACAATTGCATATAATGGTA+GGG | 0.585156 | 8_3:+6441280 | None:intergenic |
AATGCTTCCACAGATAATAG+AGG | 0.590589 | 8_3:+6443222 | None:intergenic |
TTTGCAATTTACACCTACAT+GGG | 0.594564 | 8_3:-6443928 | Msa1272670:CDS |
GCTAGGGTCAATGTTCAGAA+GGG | 0.597481 | 8_3:-6440998 | Msa1272670:CDS |
CAAGGAAGTTCTCATAATGG+TGG | 0.601661 | 8_3:-6441036 | Msa1272670:CDS |
AAAAGTCTGAAAGTGTGACT+TGG | 0.602564 | 8_3:+6443519 | None:intergenic |
CGTCGCTGTTTCCTTCGCTG+TGG | 0.603794 | 8_3:-6443880 | Msa1272670:CDS |
ACAAGAGCAACAACCCATGT+AGG | 0.607296 | 8_3:+6443915 | None:intergenic |
TTATTCCAAGGCTTGTTATG+GGG | 0.609416 | 8_3:-6441424 | Msa1272670:intron |
AATTGGATACTGTGATGCCA+AGG | 0.611719 | 8_3:-6443419 | Msa1272670:intron |
GAAGTACTAACGTTCAGCTA+GGG | 0.618696 | 8_3:-6441014 | Msa1272670:CDS |
AAAGGTGCCTCTATTATCTG+TGG | 0.620989 | 8_3:-6443229 | Msa1272670:CDS |
AACTGCAACATGGGTCATGG+TGG | 0.626233 | 8_3:-6443975 | None:intergenic |
GGAAAGATTCTGCTATAATG+GGG | 0.642308 | 8_3:-6442803 | Msa1272670:CDS |
CTAGGGTCAATGTTCAGAAG+GGG | 0.653279 | 8_3:-6440997 | Msa1272670:CDS |
GATCACGATCATTCATCCAA+AGG | 0.657541 | 8_3:-6443448 | Msa1272670:CDS |
AAGATTCTGCTATAATGGGG+TGG | 0.665156 | 8_3:-6442800 | Msa1272670:CDS |
AACCAGAAGTGATCATCTGA+TGG | 0.668856 | 8_3:+6441668 | None:intergenic |
GATGAAAACCATCAATCACA+AGG | 0.702204 | 8_3:-6442987 | Msa1272670:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AGAAAAAATTATAAGATAAA+AGG | + | chr8_3:6443099-6443118 | None:intergenic | 10.0% |
!!! | ATTAAAATTTATTTTGTTTG+TGG | + | chr8_3:6443681-6443700 | None:intergenic | 10.0% |
!!! | TTTGAAAATTTTGATATGTT+TGG | - | chr8_3:6441185-6441204 | Msa1272670:intron | 15.0% |
!! | AATACAAAATATGATTAAAG+TGG | + | chr8_3:6441644-6441663 | None:intergenic | 15.0% |
!! | AATAATAATCATATGTCTTA+AGG | + | chr8_3:6442716-6442735 | None:intergenic | 15.0% |
!! | AAATTATAAGATAAAAGGTT+TGG | + | chr8_3:6443094-6443113 | None:intergenic | 15.0% |
!!! | ACTTTTTTCTTTAATATTGT+AGG | - | chr8_3:6443577-6443596 | Msa1272670:CDS | 15.0% |
!!! | CTTTTTTCTTTAATATTGTA+GGG | - | chr8_3:6443578-6443597 | Msa1272670:CDS | 15.0% |
!!! | TAATTTTTTACAAATGTAGA+TGG | - | chr8_3:6443742-6443761 | Msa1272670:intron | 15.0% |
!!! | AATTTTTTACAAATGTAGAT+GGG | - | chr8_3:6443743-6443762 | Msa1272670:intron | 15.0% |
!! | TGTATTATGATGTTAATTTC+AGG | - | chr8_3:6441658-6441677 | Msa1272670:CDS | 20.0% |
!! | GTATTATGATGTTAATTTCA+GGG | - | chr8_3:6441659-6441678 | Msa1272670:CDS | 20.0% |
!! | GAACAAAAATAAAGATATGT+AGG | + | chr8_3:6441721-6441740 | None:intergenic | 20.0% |
!! | TTAACAAATTTGATCAGTTA+TGG | - | chr8_3:6441951-6441970 | Msa1272670:intron | 20.0% |
!! | AAACTTTATAATATGCATAC+TGG | - | chr8_3:6442003-6442022 | Msa1272670:intron | 20.0% |
!!! | TGTAGTTCATTATATTTTAC+TGG | - | chr8_3:6442151-6442170 | Msa1272670:intron | 20.0% |
!!! | TCATTTTTCAAGCAATTTTA+TGG | - | chr8_3:6442220-6442239 | Msa1272670:intron | 20.0% |
!! | GAAACAGAATCAATAATATA+TGG | + | chr8_3:6442341-6442360 | None:intergenic | 20.0% |
!! | TACTTGTGAAAATTAAACTT+TGG | + | chr8_3:6442392-6442411 | None:intergenic | 20.0% |
!! | AATCTTCATCAGTAATTTAT+TGG | - | chr8_3:6442494-6442513 | Msa1272670:CDS | 20.0% |
!!! | TTCACGACTTTATTTTATTA+TGG | - | chr8_3:6442574-6442593 | Msa1272670:intron | 20.0% |
!!! | GTTTTAAAAATCAATCAGAA+CGG | + | chr8_3:6442822-6442841 | None:intergenic | 20.0% |
!!! | ACAGAAATCTTAATTTTGAT+TGG | + | chr8_3:6442935-6442954 | None:intergenic | 20.0% |
!! | AAAATTAAGATTTCTGTTCA+TGG | - | chr8_3:6442938-6442957 | Msa1272670:intron | 20.0% |
!!! | AAGAGAGAAAATAAAAGTAT+AGG | + | chr8_3:6443392-6443411 | None:intergenic | 20.0% |
!!! | ACCTTCTTTGATTTTTTGTA+AGG | + | chr8_3:6441120-6441139 | None:intergenic | 25.0% |
! | TAAGAATAACAAAGCAAACA+AGG | + | chr8_3:6441147-6441166 | None:intergenic | 25.0% |
! | TTTCTAACTGTAACACAAAA+TGG | - | chr8_3:6441274-6441293 | Msa1272670:CDS | 25.0% |
! | TTCTAACTGTAACACAAAAT+GGG | - | chr8_3:6441275-6441294 | Msa1272670:CDS | 25.0% |
! | AACATGTAATTTCAATACCT+TGG | + | chr8_3:6441512-6441531 | None:intergenic | 25.0% |
!! | GGTATTGAAATTACATGTTA+TGG | - | chr8_3:6441513-6441532 | Msa1272670:intron | 25.0% |
! | AAACCTTGAACAAAATGTAA+AGG | + | chr8_3:6441540-6441559 | None:intergenic | 25.0% |
!!! | TGTGTTTTGACTATTGTTTT+TGG | - | chr8_3:6441764-6441783 | Msa1272670:CDS | 25.0% |
! | TTAATTTACCTTGTGATTGA+TGG | + | chr8_3:6441935-6441954 | None:intergenic | 25.0% |
!! | TTTATCAAGGATCATTTTAC+TGG | - | chr8_3:6442080-6442099 | Msa1272670:intron | 25.0% |
! | TAAGCTGAACAAAGAAAATT+TGG | + | chr8_3:6442520-6442539 | None:intergenic | 25.0% |
!! | TATTTTATTATGGTTGCAGT+TGG | - | chr8_3:6442584-6442603 | Msa1272670:intron | 25.0% |
!!! | TTTTTGTTGCTTAATGTCAA+TGG | - | chr8_3:6442631-6442650 | Msa1272670:intron | 25.0% |
! | TGTCTTAAGGTAGAAAATAT+AGG | + | chr8_3:6442703-6442722 | None:intergenic | 25.0% |
!!! | TCTCAAAAGAATTTTGGAAA+AGG | + | chr8_3:6443308-6443327 | None:intergenic | 25.0% |
!! | ATGCTATCTCAAAAGAATTT+TGG | + | chr8_3:6443314-6443333 | None:intergenic | 25.0% |
!!! | TTGAGATAGCATTCTTTTTT+TGG | - | chr8_3:6443322-6443341 | Msa1272670:intron | 25.0% |
!!! | TAGCATTCTTTTTTTGGATA+TGG | - | chr8_3:6443328-6443347 | Msa1272670:intron | 25.0% |
!!! | AGCATTCTTTTTTTGGATAT+GGG | - | chr8_3:6443329-6443348 | Msa1272670:intron | 25.0% |
! | TGTGTATCTTAGATAACATA+TGG | - | chr8_3:6443429-6443448 | Msa1272670:CDS | 25.0% |
! | TGGCTATAAATCATGTATAA+TGG | - | chr8_3:6443449-6443468 | Msa1272670:CDS | 25.0% |
! | GGCTATAAATCATGTATAAT+GGG | - | chr8_3:6443450-6443469 | Msa1272670:CDS | 25.0% |
!! | AAGAAAAAAGTGTAAGAAAG+AGG | + | chr8_3:6443568-6443587 | None:intergenic | 25.0% |
! | AACAATTGCATATAATGGTA+GGG | + | chr8_3:6443634-6443653 | None:intergenic | 25.0% |
! | TAACAATTGCATATAATGGT+AGG | + | chr8_3:6443635-6443654 | None:intergenic | 25.0% |
! | TGTGTAACAATTGCATATAA+TGG | + | chr8_3:6443639-6443658 | None:intergenic | 25.0% |
! | ATTATATGCAATTGTTACAC+AGG | - | chr8_3:6443638-6443657 | Msa1272670:CDS | 25.0% |
ATTTGCAATTTACACCTACA+TGG | - | chr8_3:6440982-6441001 | Msa1272670:CDS | 30.0% | |
TTTGCAATTTACACCTACAT+GGG | - | chr8_3:6440983-6441002 | Msa1272670:CDS | 30.0% | |
GCCTTACAAAAAATCAAAGA+AGG | - | chr8_3:6441116-6441135 | Msa1272670:CDS | 30.0% | |
!!! | TTATGCAGAGTTGATGATTT+TGG | - | chr8_3:6441237-6441256 | Msa1272670:intron | 30.0% |
!!! | TATGCAGAGTTGATGATTTT+GGG | - | chr8_3:6441238-6441257 | Msa1272670:intron | 30.0% |
ATATGAATAGTCCATTCTCT+TGG | + | chr8_3:6441319-6441338 | None:intergenic | 30.0% | |
ATGATGTTAATTTCAGGGAA+AGG | - | chr8_3:6441664-6441683 | Msa1272670:CDS | 30.0% | |
!!! | GTTTTGACTATTGTTTTTGG+AGG | - | chr8_3:6441767-6441786 | Msa1272670:CDS | 30.0% |
!!! | GTCGTTTTTAATAGATTCGT+CGG | - | chr8_3:6441871-6441890 | Msa1272670:intron | 30.0% |
! | TCATCAACATGCTTTTATCA+AGG | - | chr8_3:6442067-6442086 | Msa1272670:intron | 30.0% |
!!! | AAGGATCATTTTACTGGTTT+TGG | - | chr8_3:6442086-6442105 | Msa1272670:intron | 30.0% |
!!! | AGGATCATTTTACTGGTTTT+GGG | - | chr8_3:6442087-6442106 | Msa1272670:intron | 30.0% |
! | ATTAAGGCTTGGTTTCATTA+AGG | - | chr8_3:6442270-6442289 | Msa1272670:intron | 30.0% |
GGTTCAATCATCATAGATAA+TGG | + | chr8_3:6442320-6442339 | None:intergenic | 30.0% | |
!! | TCTGTTTTAGACTCATTGTA+GGG | - | chr8_3:6442361-6442380 | Msa1272670:intron | 30.0% |
GATGATTTCAAGAAAGTTGT+TGG | - | chr8_3:6442431-6442450 | Msa1272670:intron | 30.0% | |
TCAAGAAAGTTGTTGGTATT+AGG | - | chr8_3:6442438-6442457 | Msa1272670:intron | 30.0% | |
!! | ATGAACAAAAGTACTAAGTC+TGG | + | chr8_3:6442664-6442683 | None:intergenic | 30.0% |
GTGACTTCTATTGTTCATAT+AGG | + | chr8_3:6442898-6442917 | None:intergenic | 30.0% | |
ATGAAGATACTTACAATGAC+AGG | + | chr8_3:6443002-6443021 | None:intergenic | 30.0% | |
AACAACTAATTCACCTTGTA+TGG | + | chr8_3:6443220-6443239 | None:intergenic | 30.0% | |
AAACCAGATACATTATTCCA+AGG | - | chr8_3:6443475-6443494 | Msa1272670:CDS | 30.0% | |
!! | ATTATTCCAAGGCTTGTTAT+GGG | - | chr8_3:6443486-6443505 | Msa1272670:CDS | 30.0% |
!!! | AAACAGACTCGTCATTTTTA+GGG | + | chr8_3:6443967-6443986 | None:intergenic | 30.0% |
GAACGTTCTCTTCATTATCT+TGG | - | chr8_3:6441053-6441072 | Msa1272670:CDS | 35.0% | |
TTCTCTTCATTATCTTGGCA+AGG | - | chr8_3:6441058-6441077 | Msa1272670:CDS | 35.0% | |
! | TTTTGTAAGGCTTCAAAGAG+TGG | + | chr8_3:6441107-6441126 | None:intergenic | 35.0% |
AAATTTGTGCTCCAAGAGAA+TGG | - | chr8_3:6441305-6441324 | Msa1272670:CDS | 35.0% | |
! | AAAAGTCTGAAAGTGTGACT+TGG | + | chr8_3:6441395-6441414 | None:intergenic | 35.0% |
!!! | TCAGACTTTTTTCTCTTCCA+AGG | - | chr8_3:6441405-6441424 | Msa1272670:intron | 35.0% |
! | TTCTCTTCCAAGGATGTTTT+TGG | - | chr8_3:6441415-6441434 | Msa1272670:intron | 35.0% |
TCATCCAAAGGTGAAGAAAT+TGG | - | chr8_3:6441475-6441494 | Msa1272670:intron | 35.0% | |
GTATCCAATTTCTTCACCTT+TGG | + | chr8_3:6441482-6441501 | None:intergenic | 35.0% | |
! | GGTCCTTTACATTTTGTTCA+AGG | - | chr8_3:6441534-6441553 | Msa1272670:intron | 35.0% |
AATGCTTCCACAGATAATAG+AGG | + | chr8_3:6441692-6441711 | None:intergenic | 35.0% | |
! | GTTTTTAATAGATTCGTCGG+TGG | - | chr8_3:6441874-6441893 | Msa1272670:intron | 35.0% |
GATGAAAACCATCAATCACA+AGG | - | chr8_3:6441924-6441943 | Msa1272670:intron | 35.0% | |
TGGGAAAGATTCTGCTATAA+TGG | - | chr8_3:6442106-6442125 | Msa1272670:intron | 35.0% | |
GGGAAAGATTCTGCTATAAT+GGG | - | chr8_3:6442107-6442126 | Msa1272670:intron | 35.0% | |
GGAAAGATTCTGCTATAATG+GGG | - | chr8_3:6442108-6442127 | Msa1272670:intron | 35.0% | |
TTATGGATCTGTGACAAAGT+TGG | - | chr8_3:6442237-6442256 | Msa1272670:intron | 35.0% | |
AGTTGGACTATGTGACATTA+AGG | - | chr8_3:6442254-6442273 | Msa1272670:intron | 35.0% | |
!! | CTCTGTTTTAGACTCATTGT+AGG | - | chr8_3:6442360-6442379 | Msa1272670:intron | 35.0% |
!! | CTGTTTTAGACTCATTGTAG+GGG | - | chr8_3:6442362-6442381 | Msa1272670:intron | 35.0% |
TGAAATCATCTTCAAGTGCA+CGG | + | chr8_3:6442421-6442440 | None:intergenic | 35.0% | |
TTGGTATCTTTGGATCTTTG+TGG | - | chr8_3:6442603-6442622 | Msa1272670:intron | 35.0% | |
AGATTTCTGTTCATGGTTTC+AGG | - | chr8_3:6442945-6442964 | Msa1272670:intron | 35.0% | |
! | TTGTATGGCTGAATGCTTTT+CGG | + | chr8_3:6443205-6443224 | None:intergenic | 35.0% |
GGATCAAGTGAATCAAAAAG+AGG | + | chr8_3:6443287-6443306 | None:intergenic | 35.0% | |
! | GTTATCTAAGATACACAAGC+AGG | + | chr8_3:6443426-6443445 | None:intergenic | 35.0% |
AAGCCTTGGAATAATGTATC+TGG | + | chr8_3:6443481-6443500 | None:intergenic | 35.0% | |
!! | CATTATTCCAAGGCTTGTTA+TGG | - | chr8_3:6443485-6443504 | Msa1272670:CDS | 35.0% |
!! | TTATTCCAAGGCTTGTTATG+GGG | - | chr8_3:6443487-6443506 | Msa1272670:CDS | 35.0% |
TTGTACTTGATCGTCGAATA+TGG | + | chr8_3:6443786-6443805 | None:intergenic | 35.0% | |
CAAGTACAAACACGACTTAT+TGG | - | chr8_3:6443797-6443816 | Msa1272670:CDS | 35.0% | |
TACAAACACGACTTATTGGT+TGG | - | chr8_3:6443801-6443820 | Msa1272670:CDS | 35.0% | |
! | ACAAACACGACTTATTGGTT+GGG | - | chr8_3:6443802-6443821 | Msa1272670:CDS | 35.0% |
GCAAAGAAGAAAGGATTAAG+AGG | - | chr8_3:6443833-6443852 | Msa1272670:CDS | 35.0% | |
!!! | CAAACAGACTCGTCATTTTT+AGG | + | chr8_3:6443968-6443987 | None:intergenic | 35.0% |
! | GCTTCCTTGTAGTCTTAAAG+AGG | - | chr8_3:6441339-6441358 | Msa1272670:intron | 40.0% |
!! | TCGTCCTCTTTAAGACTACA+AGG | + | chr8_3:6441346-6441365 | None:intergenic | 40.0% |
GATCACGATCATTCATCCAA+AGG | - | chr8_3:6441463-6441482 | Msa1272670:CDS | 40.0% | |
AATTGGATACTGTGATGCCA+AGG | - | chr8_3:6441492-6441511 | Msa1272670:intron | 40.0% | |
!! | AAAGGTGCCTCTATTATCTG+TGG | - | chr8_3:6441682-6441701 | Msa1272670:CDS | 40.0% |
! | AAGATTCTGCTATAATGGGG+TGG | - | chr8_3:6442111-6442130 | Msa1272670:intron | 40.0% |
GACTATGTGACATTAAGGCT+TGG | - | chr8_3:6442259-6442278 | Msa1272670:intron | 40.0% | |
! | ATGGTTGCAGTTGGTATCTT+TGG | - | chr8_3:6442593-6442612 | Msa1272670:intron | 40.0% |
! | GTTTTACAAACCAAAGCGAC+CGG | - | chr8_3:6442748-6442767 | Msa1272670:intron | 40.0% |
! | TTCTGTTCATGGTTTCAGGT+TGG | - | chr8_3:6442949-6442968 | Msa1272670:intron | 40.0% |
!! | CAGGTTGGCACACATATTTT+TGG | - | chr8_3:6442964-6442983 | Msa1272670:intron | 40.0% |
TCTTAAGCTTCTTCTTGCTG+TGG | - | chr8_3:6443134-6443153 | Msa1272670:intron | 40.0% | |
! | CTTAAGCTTCTTCTTGCTGT+GGG | - | chr8_3:6443135-6443154 | Msa1272670:intron | 40.0% |
!! | GAAAAGCATTCAGCCATACA+AGG | - | chr8_3:6443204-6443223 | Msa1272670:CDS | 40.0% |
AACCATCAGATGATCACTTC+TGG | - | chr8_3:6443241-6443260 | Msa1272670:intron | 40.0% | |
AACCAGAAGTGATCATCTGA+TGG | + | chr8_3:6443246-6443265 | None:intergenic | 40.0% | |
CTAAGATACACAAGCAGGTA+AGG | + | chr8_3:6443421-6443440 | None:intergenic | 40.0% | |
! | ACTTATTGGTTGGGCACAAA+AGG | - | chr8_3:6443811-6443830 | Msa1272670:CDS | 40.0% |
GCACAAAAGGCAAAGAAGAA+AGG | - | chr8_3:6443824-6443843 | Msa1272670:CDS | 40.0% | |
GTCCAAGGAAGTTCTCATAA+TGG | - | chr8_3:6443872-6443891 | Msa1272670:CDS | 40.0% | |
CACCATTATGAGAACTTCCT+TGG | + | chr8_3:6443877-6443896 | None:intergenic | 40.0% | |
CAAGGAAGTTCTCATAATGG+TGG | - | chr8_3:6443875-6443894 | Msa1272670:CDS | 40.0% | |
! | GAAGTACTAACGTTCAGCTA+GGG | - | chr8_3:6443897-6443916 | Msa1272670:CDS | 40.0% |
! | GACAATGGCATTGTTTTCTG+GGG | + | chr8_3:6443945-6443964 | None:intergenic | 40.0% |
! | GGACAATGGCATTGTTTTCT+GGG | + | chr8_3:6443946-6443965 | None:intergenic | 40.0% |
!!! | CTCGTCATTTTTAGGGACAA+TGG | + | chr8_3:6443960-6443979 | None:intergenic | 40.0% |
ACAAGAGCAACAACCCATGT+AGG | + | chr8_3:6440999-6441018 | None:intergenic | 45.0% | |
AGGCTTCAAAGAGTGGTTTC+TGG | + | chr8_3:6441100-6441119 | None:intergenic | 45.0% | |
AGCAGTGCCAAAAACATCCT+TGG | + | chr8_3:6441425-6441444 | None:intergenic | 45.0% | |
!!! | AGGATGTTTTTGGCACTGCT+AGG | - | chr8_3:6441425-6441444 | Msa1272670:CDS | 45.0% |
! | TTCTGCTATAATGGGGTGGT+TGG | - | chr8_3:6442115-6442134 | Msa1272670:intron | 45.0% |
TCAACGAGACTCTGATCAAC+CGG | + | chr8_3:6442770-6442789 | None:intergenic | 45.0% | |
TGATCAGAGTCTCGTTGAAC+TGG | - | chr8_3:6442772-6442791 | Msa1272670:intron | 45.0% | |
ATCAAAAAGAGGACGATGCG+AGG | + | chr8_3:6443276-6443295 | None:intergenic | 45.0% | |
AGTTACCCCATAACAAGCCT+TGG | + | chr8_3:6443495-6443514 | None:intergenic | 45.0% | |
GATAGCAACCATTCTGTCCA+AGG | - | chr8_3:6443857-6443876 | Msa1272670:CDS | 45.0% | |
GAGAACTTCCTTGGACAGAA+TGG | + | chr8_3:6443868-6443887 | None:intergenic | 45.0% | |
!! | GGAAGTACTAACGTTCAGCT+AGG | - | chr8_3:6443896-6443915 | Msa1272670:CDS | 45.0% |
AGCTAGGGTCAATGTTCAGA+AGG | - | chr8_3:6443912-6443931 | Msa1272670:CDS | 45.0% | |
GCTAGGGTCAATGTTCAGAA+GGG | - | chr8_3:6443913-6443932 | Msa1272670:CDS | 45.0% | |
CTAGGGTCAATGTTCAGAAG+GGG | - | chr8_3:6443914-6443933 | Msa1272670:CDS | 45.0% | |
! | GGGACAATGGCATTGTTTTC+TGG | + | chr8_3:6443947-6443966 | None:intergenic | 45.0% |
AAGAGAACGTTCCACAGCGA+AGG | + | chr8_3:6441045-6441064 | None:intergenic | 50.0% | |
GATCGTGATCGTCACCTAGA+AGG | + | chr8_3:6441453-6441472 | None:intergenic | 50.0% | |
TAATGCAGCGCCAGAACGAA+CGG | - | chr8_3:6442028-6442047 | Msa1272670:intron | 50.0% | |
! | GCTATAATGGGGTGGTTGGT+AGG | - | chr8_3:6442119-6442138 | Msa1272670:intron | 50.0% |
GGTGGAGGAGAAGCTGAAGA+AGG | - | chr8_3:6440954-6440973 | Msa1272670:CDS | 55.0% | |
AGCGCCAGAACGAACGGATA+CGG | - | chr8_3:6442034-6442053 | Msa1272670:intron | 55.0% | |
GTCACCGTATCCGTTCGTTC+TGG | + | chr8_3:6442041-6442060 | None:intergenic | 55.0% | |
CTCTGATCAACCGGTCGCTT+TGG | + | chr8_3:6442761-6442780 | None:intergenic | 55.0% | |
! | CGTCGCTGTTTCCTTCGCTG+TGG | - | chr8_3:6441031-6441050 | Msa1272670:CDS | 60.0% |
! | AGATTCGTCGGTGGAAGCGC+TGG | - | chr8_3:6441883-6441902 | Msa1272670:intron | 60.0% |
!! | GATTCGTCGGTGGAAGCGCT+GGG | - | chr8_3:6441884-6441903 | Msa1272670:intron | 60.0% |
GGCACTGCTAGGCGCCTTCT+AGG | - | chr8_3:6441436-6441455 | Msa1272670:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_3 | gene | 6440945 | 6443988 | 6440945 | ID=Msa1272670;Name=Msa1272670 |
chr8_3 | mRNA | 6440945 | 6443988 | 6440945 | ID=Msa1272670-mRNA-1;Parent=Msa1272670;Name=Msa1272670-mRNA-1;_AED=0.13;_eAED=0.13;_QI=0|0.16|0.07|1|1|1|13|0|520 |
chr8_3 | exon | 6443796 | 6443988 | 6443796 | ID=Msa1272670-mRNA-1:exon:2386;Parent=Msa1272670-mRNA-1 |
chr8_3 | exon | 6443420 | 6443688 | 6443420 | ID=Msa1272670-mRNA-1:exon:2385;Parent=Msa1272670-mRNA-1 |
chr8_3 | exon | 6443137 | 6443253 | 6443137 | ID=Msa1272670-mRNA-1:exon:2384;Parent=Msa1272670-mRNA-1 |
chr8_3 | exon | 6442988 | 6443048 | 6442988 | ID=Msa1272670-mRNA-1:exon:2383;Parent=Msa1272670-mRNA-1 |
chr8_3 | exon | 6442797 | 6442897 | 6442797 | ID=Msa1272670-mRNA-1:exon:2382;Parent=Msa1272670-mRNA-1 |
chr8_3 | exon | 6442642 | 6442716 | 6442642 | ID=Msa1272670-mRNA-1:exon:2381;Parent=Msa1272670-mRNA-1 |
chr8_3 | exon | 6442474 | 6442562 | 6442474 | ID=Msa1272670-mRNA-1:exon:2380;Parent=Msa1272670-mRNA-1 |
chr8_3 | exon | 6442281 | 6442330 | 6442281 | ID=Msa1272670-mRNA-1:exon:2379;Parent=Msa1272670-mRNA-1 |
chr8_3 | exon | 6441926 | 6441966 | 6441926 | ID=Msa1272670-mRNA-1:exon:2378;Parent=Msa1272670-mRNA-1 |
chr8_3 | exon | 6441583 | 6441792 | 6441583 | ID=Msa1272670-mRNA-1:exon:2377;Parent=Msa1272670-mRNA-1 |
chr8_3 | exon | 6441425 | 6441492 | 6441425 | ID=Msa1272670-mRNA-1:exon:2376;Parent=Msa1272670-mRNA-1 |
chr8_3 | exon | 6441274 | 6441334 | 6441274 | ID=Msa1272670-mRNA-1:exon:2375;Parent=Msa1272670-mRNA-1 |
chr8_3 | exon | 6440945 | 6441172 | 6440945 | ID=Msa1272670-mRNA-1:exon:2374;Parent=Msa1272670-mRNA-1 |
chr8_3 | CDS | 6443796 | 6443988 | 6443796 | ID=Msa1272670-mRNA-1:cds;Parent=Msa1272670-mRNA-1 |
chr8_3 | CDS | 6443420 | 6443688 | 6443420 | ID=Msa1272670-mRNA-1:cds;Parent=Msa1272670-mRNA-1 |
chr8_3 | CDS | 6443137 | 6443253 | 6443137 | ID=Msa1272670-mRNA-1:cds;Parent=Msa1272670-mRNA-1 |
chr8_3 | CDS | 6442988 | 6443048 | 6442988 | ID=Msa1272670-mRNA-1:cds;Parent=Msa1272670-mRNA-1 |
chr8_3 | CDS | 6442797 | 6442897 | 6442797 | ID=Msa1272670-mRNA-1:cds;Parent=Msa1272670-mRNA-1 |
chr8_3 | CDS | 6442642 | 6442716 | 6442642 | ID=Msa1272670-mRNA-1:cds;Parent=Msa1272670-mRNA-1 |
chr8_3 | CDS | 6442474 | 6442562 | 6442474 | ID=Msa1272670-mRNA-1:cds;Parent=Msa1272670-mRNA-1 |
chr8_3 | CDS | 6442281 | 6442330 | 6442281 | ID=Msa1272670-mRNA-1:cds;Parent=Msa1272670-mRNA-1 |
chr8_3 | CDS | 6441926 | 6441966 | 6441926 | ID=Msa1272670-mRNA-1:cds;Parent=Msa1272670-mRNA-1 |
chr8_3 | CDS | 6441583 | 6441792 | 6441583 | ID=Msa1272670-mRNA-1:cds;Parent=Msa1272670-mRNA-1 |
chr8_3 | CDS | 6441425 | 6441492 | 6441425 | ID=Msa1272670-mRNA-1:cds;Parent=Msa1272670-mRNA-1 |
chr8_3 | CDS | 6441274 | 6441334 | 6441274 | ID=Msa1272670-mRNA-1:cds;Parent=Msa1272670-mRNA-1 |
chr8_3 | CDS | 6440945 | 6441172 | 6440945 | ID=Msa1272670-mRNA-1:cds;Parent=Msa1272670-mRNA-1 |
Gene Sequence |
Protein sequence |