Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1311240 | XP_003626873.1 | 95.570 | 158 | 6 | 1 | 1 | 157 | 1 | 158 | 5.15e-103 | 305 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1311240 | G7LEC5 | 95.570 | 158 | 6 | 1 | 1 | 157 | 1 | 158 | 2.46e-103 | 305 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1182870 | Msa1311240 | 0.849434 | 3.240989e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1311240 | MtrunA17_Chr8g0338571 | 95.570 | 158 | 6 | 1 | 1 | 157 | 1 | 158 | 4.74e-107 | 305 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1311240 | AT5G48530.1 | 75.316 | 158 | 38 | 1 | 1 | 157 | 1 | 158 | 1.28e-82 | 242 |
| Msa1311240 | AT3G07440.1 | 72.785 | 158 | 42 | 1 | 1 | 157 | 1 | 158 | 4.80e-80 | 237 |
| Msa1311240 | AT3G07440.2 | 72.785 | 158 | 42 | 1 | 1 | 157 | 1 | 158 | 4.80e-80 | 237 |
Find 76 sgRNAs with CRISPR-Local
Find 311 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAAGATTTCTCTCCTTAC+AGG | 0.234397 | 8_4:+7944387 | Msa1311240:CDS |
| TTCTGTCTCTAACAAAATTC+AGG | 0.242989 | 8_4:-7945525 | None:intergenic |
| ATAATGAACTTCGAGAAAAT+TGG | 0.245120 | 8_4:+7944285 | Msa1311240:CDS |
| ATTTCATTTCATGGCTAATT+TGG | 0.257790 | 8_4:-7942566 | None:intergenic |
| AAAATTGGGAGAGACTTTAT+TGG | 0.285983 | 8_4:+7944300 | Msa1311240:CDS |
| AACTGTTTACGTCGTTTGTT+AGG | 0.303562 | 8_4:-7942934 | None:intergenic |
| TGTAGACTTGGGGCGGCGTC+TGG | 0.321188 | 8_4:-7942791 | None:intergenic |
| TAGAACTCGCCTCGTTCTTA+AGG | 0.327073 | 8_4:+7942975 | Msa1311240:CDS |
| GGATTGGATTTGAATGGAAT+TGG | 0.339110 | 8_4:-7942674 | None:intergenic |
| CTTGGGGCGGCGTCTGGAGT+GGG | 0.351549 | 8_4:-7942785 | None:intergenic |
| TCCTTGGTGCAAAAGGTATA+TGG | 0.351865 | 8_4:+7944256 | Msa1311240:CDS |
| ACTTGGGGCGGCGTCTGGAG+TGG | 0.368410 | 8_4:-7942786 | None:intergenic |
| TTGGGGCGGCGTCTGGAGTG+GGG | 0.373155 | 8_4:-7942784 | None:intergenic |
| TGGGGCGGCGTCTGGAGTGG+GGG | 0.374341 | 8_4:-7942783 | None:intergenic |
| AAATATCGATCTGTATTTAG+TGG | 0.376993 | 8_4:-7946798 | None:intergenic |
| GGTGAGAGAGGGGAGGCGTT+TGG | 0.389367 | 8_4:-7942710 | None:intergenic |
| AAATTGGGAGAGACTTTATT+GGG | 0.392320 | 8_4:+7944301 | Msa1311240:CDS |
| ATGGGAGGTGCGAGAAAGAA+AGG | 0.414335 | 8_4:-7942734 | None:intergenic |
| GACGGTGAAATGCACGAAAT+CGG | 0.420520 | 8_4:+7942862 | Msa1311240:CDS |
| GTTGAGGAGAGCGGAGTTGA+TGG | 0.424023 | 8_4:-7942753 | None:intergenic |
| GAGAGAAGAATGAGGGAGAA+AGG | 0.424570 | 8_4:+7945604 | Msa1311240:three_prime_UTR |
| TAGCATGGATTGGATTTGAA+TGG | 0.430707 | 8_4:-7942680 | None:intergenic |
| TGACAGAGAGAGAAGAATGA+GGG | 0.435897 | 8_4:+7945597 | Msa1311240:three_prime_UTR |
| TAATGAACTTCGAGAAAATT+GGG | 0.440405 | 8_4:+7944286 | Msa1311240:CDS |
| GGGCGGCGGGTTGAGGAGAG+CGG | 0.445382 | 8_4:-7942762 | None:intergenic |
| CTTCAGTAACGAATTGTTGA+AGG | 0.461395 | 8_4:+7946989 | Msa1311240:three_prime_UTR |
| AACATGATCCTTGGTGCAAA+AGG | 0.461729 | 8_4:+7944249 | Msa1311240:CDS |
| ATCGATCTGTATTTAGTGGT+TGG | 0.462290 | 8_4:-7946794 | None:intergenic |
| GGGGCGGCGTCTGGAGTGGG+GGG | 0.475207 | 8_4:-7942782 | None:intergenic |
| TGGGAGGTGCGAGAAAGAAA+GGG | 0.477251 | 8_4:-7942733 | None:intergenic |
| TTTCTCTAACAAACTTGCTC+GGG | 0.483782 | 8_4:+7944331 | Msa1311240:CDS |
| ATGTTGACAGAGAGATTGTC+TGG | 0.492927 | 8_4:+7946945 | Msa1311240:three_prime_UTR |
| ATGACAGAGAGAGAAGAATG+AGG | 0.494681 | 8_4:+7945596 | Msa1311240:three_prime_UTR |
| AGCGGAAGAGGTGTAGACTT+GGG | 0.496988 | 8_4:-7942802 | None:intergenic |
| ATTCTCATGATTCAGAAGGC+TGG | 0.504265 | 8_4:+7946769 | Msa1311240:three_prime_UTR |
| GTTAACTTTCTCGAAAGTAT+CGG | 0.504396 | 8_4:-7945551 | None:intergenic |
| ACTGTTTACGTCGTTTGTTA+GGG | 0.504411 | 8_4:-7942933 | None:intergenic |
| CCAAACAGAAAGGTATCAAA+AGG | 0.506324 | 8_4:+7946824 | Msa1311240:three_prime_UTR |
| GTTTCTCTAACAAACTTGCT+CGG | 0.513026 | 8_4:+7944330 | Msa1311240:CDS |
| TTGAGGAGAGCGGAGTTGAT+GGG | 0.514920 | 8_4:-7942752 | None:intergenic |
| ATCACGTGCCGCCACGTGAA+CGG | 0.516179 | 8_4:+7942887 | Msa1311240:CDS |
| CTTCAACAATTCGTTACTGA+AGG | 0.519286 | 8_4:-7946988 | None:intergenic |
| GTCCCACCTCGTGTGATAGC+AGG | 0.527570 | 8_4:-7946867 | None:intergenic |
| AGCAACAGATCCTCCATGCA+TGG | 0.532830 | 8_4:-7946745 | None:intergenic |
| ACGACGGAGGCAAACCTGTA+AGG | 0.532996 | 8_4:-7944401 | None:intergenic |
| GCAGCATTTGCTCCCATGCA+TGG | 0.533882 | 8_4:+7946732 | Msa1311240:intron |
| GGGAGGTGCGAGAAAGAAAG+GGG | 0.534270 | 8_4:-7942732 | None:intergenic |
| AAGCGGAAGAGGTGTAGACT+TGG | 0.542120 | 8_4:-7942803 | None:intergenic |
| TAAGAAGAAGATAACAACTC+TGG | 0.550634 | 8_4:-7942600 | None:intergenic |
| ATACTCTATCTACATACTGC+AGG | 0.557497 | 8_4:-7947135 | None:intergenic |
| TGGTGAGAGATAGCATGGAT+TGG | 0.561063 | 8_4:-7942690 | None:intergenic |
| GGAGAGACTTTATTGGGACG+AGG | 0.562141 | 8_4:+7944307 | Msa1311240:CDS |
| GCGTTTGGTGAGAGATAGCA+TGG | 0.568339 | 8_4:-7942695 | None:intergenic |
| ACCTCGTGTGATAGCAGGCA+TGG | 0.575031 | 8_4:-7946862 | None:intergenic |
| CAACAATTCGTTACTGAAGG+GGG | 0.579421 | 8_4:-7946985 | None:intergenic |
| TCAACAATTCGTTACTGAAG+GGG | 0.581763 | 8_4:-7946986 | None:intergenic |
| TTCAACAATTCGTTACTGAA+GGG | 0.583947 | 8_4:-7946987 | None:intergenic |
| GCTGATTCTCATGATTCAGA+AGG | 0.590392 | 8_4:+7946765 | Msa1311240:three_prime_UTR |
| GCAACAGATCCTCCATGCAT+GGG | 0.593286 | 8_4:-7946744 | None:intergenic |
| ATTGAAAGGAACATGATCCT+TGG | 0.595477 | 8_4:+7944240 | Msa1311240:intron |
| GCGGAAGAGGTGTAGACTTG+GGG | 0.622024 | 8_4:-7942801 | None:intergenic |
| GAGAGACTTTATTGGGACGA+GGG | 0.623420 | 8_4:+7944308 | Msa1311240:CDS |
| CGGAGGAAAGATCAGAATGG+TGG | 0.635023 | 8_4:+7942833 | Msa1311240:CDS |
| ATGCCTGCTATCACACGAGG+TGG | 0.638911 | 8_4:+7946864 | Msa1311240:three_prime_UTR |
| TCAGAATGGTGGATAGTCGA+CGG | 0.642446 | 8_4:+7942844 | Msa1311240:CDS |
| ATCACGAACCGTTCACGTGG+CGG | 0.647450 | 8_4:-7942895 | None:intergenic |
| GAAGAGGTGTAGACTTGGGG+CGG | 0.649701 | 8_4:-7942798 | None:intergenic |
| GGAATCACGAACCGTTCACG+TGG | 0.656876 | 8_4:-7942898 | None:intergenic |
| TGCCTGCTATCACACGAGGT+GGG | 0.665208 | 8_4:+7946865 | Msa1311240:three_prime_UTR |
| GGAGGTGCGAGAAAGAAAGG+GGG | 0.669676 | 8_4:-7942731 | None:intergenic |
| AAGCGGAGGAAAGATCAGAA+TGG | 0.676617 | 8_4:+7942830 | Msa1311240:CDS |
| AGGAGAGCGGAGTTGATGGG+AGG | 0.681071 | 8_4:-7942749 | None:intergenic |
| TTGTTAGGGATATTCTCACG+AGG | 0.696188 | 8_4:-7942919 | None:intergenic |
| GCATTTGCTCCCATGCATGG+AGG | 0.713060 | 8_4:+7946735 | Msa1311240:intron |
| GCCATGCCTGCTATCACACG+AGG | 0.723702 | 8_4:+7946861 | Msa1311240:three_prime_UTR |
| TAACAGATTCCTTAAGAACG+AGG | 0.736915 | 8_4:-7942984 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATGTATTTTAAGATTTA+GGG | + | chr8_4:7943287-7943306 | Msa1311240:intron | 10.0% |
| !! | GATTTAAATTTATTTATCTA+TGG | + | chr8_4:7943932-7943951 | Msa1311240:intron | 10.0% |
| !!! | AATTTATTATTGTTATTAGT+TGG | + | chr8_4:7945376-7945395 | Msa1311240:intron | 10.0% |
| !!! | CAAAATGTATTTTAAGATTT+AGG | + | chr8_4:7943286-7943305 | Msa1311240:intron | 15.0% |
| !! | AAATTAAATAATGTCATGTT+TGG | - | chr8_4:7943525-7943544 | None:intergenic | 15.0% |
| !! | AAGTAGCAATAATAAAAATA+AGG | + | chr8_4:7943704-7943723 | Msa1311240:intron | 15.0% |
| !! | GAAACTTAAAATAAACATAA+TGG | - | chr8_4:7943748-7943767 | None:intergenic | 15.0% |
| !!! | TTGAAAATTTTTAAACTTAG+GGG | - | chr8_4:7943779-7943798 | None:intergenic | 15.0% |
| !!! | GTTGAAAATTTTTAAACTTA+GGG | - | chr8_4:7943780-7943799 | None:intergenic | 15.0% |
| !!! | AGTTGAAAATTTTTAAACTT+AGG | - | chr8_4:7943781-7943800 | None:intergenic | 15.0% |
| !!! | AAGTTTAAAAATTTTCAACT+TGG | + | chr8_4:7943781-7943800 | Msa1311240:intron | 15.0% |
| !! | AACATAATATTAAAAGACAT+TGG | - | chr8_4:7944027-7944046 | None:intergenic | 15.0% |
| !!! | TTTTGTTGAATGTTTTAAAA+TGG | + | chr8_4:7945714-7945733 | Msa1311240:intron | 15.0% |
| !!! | TTTGTTGAATGTTTTAAAAT+GGG | + | chr8_4:7945715-7945734 | Msa1311240:intron | 15.0% |
| !!! | ATTTATAATTGATTCAACTT+AGG | - | chr8_4:7945857-7945876 | None:intergenic | 15.0% |
| !!! | AGATTTTCAATTTCATTTCA+TGG | - | chr8_4:7942578-7942597 | None:intergenic | 20.0% |
| !! | TAGAAAACGAAAAAAATCTA+AGG | - | chr8_4:7943035-7943054 | None:intergenic | 20.0% |
| !! | ATACATAAGCACTTATATAA+AGG | + | chr8_4:7943477-7943496 | Msa1311240:intron | 20.0% |
| !!! | GTTTATTTTAAGTTTCAAGT+TGG | + | chr8_4:7943752-7943771 | Msa1311240:intron | 20.0% |
| !! | TAACTTAAAATTTGACAGAA+AGG | - | chr8_4:7943838-7943857 | None:intergenic | 20.0% |
| !! | TATCTTTATAACTAGATCAA+AGG | + | chr8_4:7943963-7943982 | Msa1311240:intron | 20.0% |
| !! | TTAAATTTCTTCAGTCATTA+AGG | + | chr8_4:7944706-7944725 | Msa1311240:intron | 20.0% |
| !! | ACAAAAATGTCCATTTAAAT+GGG | - | chr8_4:7945700-7945719 | None:intergenic | 20.0% |
| !! | AACAAAAATGTCCATTTAAA+TGG | - | chr8_4:7945701-7945720 | None:intergenic | 20.0% |
| !!! | TGAGATTGAAAATTTGAAAT+TGG | - | chr8_4:7946044-7946063 | None:intergenic | 20.0% |
| !!! | TTTTTTGTCATGTTATTGTA+TGG | + | chr8_4:7946179-7946198 | Msa1311240:intron | 20.0% |
| !!! | AATTTTGAAGACTAAATGTT+TGG | - | chr8_4:7946539-7946558 | None:intergenic | 20.0% |
| !!! | AGTCTTCAAAATTTTAATAG+AGG | + | chr8_4:7946546-7946565 | Msa1311240:intron | 20.0% |
| !!! | TTGTTTACAATTTTGTTTAG+TGG | + | chr8_4:7946685-7946704 | Msa1311240:intron | 20.0% |
| !!! | TGTTTACAATTTTGTTTAGT+GGG | + | chr8_4:7946686-7946705 | Msa1311240:intron | 20.0% |
| ! | ATTTCATTTCATGGCTAATT+TGG | - | chr8_4:7942569-7942588 | None:intergenic | 25.0% |
| !!! | TATGATGATTTTGAGGTTTA+GGG | - | chr8_4:7942628-7942647 | None:intergenic | 25.0% |
| !!! | TTATGATGATTTTGAGGTTT+AGG | - | chr8_4:7942629-7942648 | None:intergenic | 25.0% |
| !! | TCATTTTCTCAAATTACTAC+GGG | - | chr8_4:7943188-7943207 | None:intergenic | 25.0% |
| !!! | GTCATTTTCTCAAATTACTA+CGG | - | chr8_4:7943189-7943208 | None:intergenic | 25.0% |
| ! | ATAATGAACTTCGAGAAAAT+TGG | + | chr8_4:7944285-7944304 | Msa1311240:CDS | 25.0% |
| ! | TAATGAACTTCGAGAAAATT+GGG | + | chr8_4:7944286-7944305 | Msa1311240:CDS | 25.0% |
| ! | ATTGTTCATAATTGCTTTCT+TGG | + | chr8_4:7944440-7944459 | Msa1311240:intron | 25.0% |
| ! | TATACAAACAGATTCAAAGT+GGG | - | chr8_4:7945410-7945429 | None:intergenic | 25.0% |
| ! | TTATACAAACAGATTCAAAG+TGG | - | chr8_4:7945411-7945430 | None:intergenic | 25.0% |
| !!! | ATTTAAATGGGTTGAATTCA+GGG | - | chr8_4:7945688-7945707 | None:intergenic | 25.0% |
| ! | TATAAATATCTCAAACAGCT+TGG | + | chr8_4:7945870-7945889 | Msa1311240:intron | 25.0% |
| !!! | ATTTTCAATCTCACTTTTGA+AGG | + | chr8_4:7946051-7946070 | Msa1311240:intron | 25.0% |
| !! | AATTCATGGAAGATTACTTT+TGG | - | chr8_4:7946077-7946096 | None:intergenic | 25.0% |
| !! | TTTTCAGAAAAACGAATTCA+TGG | - | chr8_4:7946091-7946110 | None:intergenic | 25.0% |
| !!! | TCGTTTTTCTGAAAATAATC+TGG | + | chr8_4:7946096-7946115 | Msa1311240:intron | 25.0% |
| ! | AAATATCGATCTGTATTTAG+TGG | - | chr8_4:7946801-7946820 | None:intergenic | 25.0% |
| TAAGAAGAAGATAACAACTC+TGG | - | chr8_4:7942603-7942622 | None:intergenic | 30.0% | |
| !! | TGTTGCTTATGATGATTTTG+AGG | - | chr8_4:7942635-7942654 | None:intergenic | 30.0% |
| !! | CTCAGATTAGTTGATAATTC+AGG | + | chr8_4:7943106-7943125 | Msa1311240:intron | 30.0% |
| ! | TTTAAGATTTAGGGCTTGTT+TGG | + | chr8_4:7943296-7943315 | Msa1311240:intron | 30.0% |
| GTTTGTGAAAGTAACTTACA+TGG | + | chr8_4:7943375-7943394 | Msa1311240:intron | 30.0% | |
| ! | CATAATATGTTTTCAGCTTC+AGG | + | chr8_4:7943398-7943417 | Msa1311240:intron | 30.0% |
| ! | GTTAACTCTATCTTGTTATG+TGG | + | chr8_4:7943854-7943873 | Msa1311240:intron | 30.0% |
| TCAACACAAACTTACTACTA+CGG | - | chr8_4:7943914-7943933 | None:intergenic | 30.0% | |
| ACTAGATCAAAGGAATAACA+TGG | + | chr8_4:7943973-7943992 | Msa1311240:intron | 30.0% | |
| TCCTAACTTTCATGATTAAG+TGG | + | chr8_4:7944046-7944065 | Msa1311240:intron | 30.0% | |
| ACCACTTAATCATGAAAGTT+AGG | - | chr8_4:7944050-7944069 | None:intergenic | 30.0% | |
| AATGTGAATGAGAAATGTGA+TGG | + | chr8_4:7944083-7944102 | Msa1311240:intron | 30.0% | |
| ATGTGAATGAGAAATGTGAT+GGG | + | chr8_4:7944084-7944103 | Msa1311240:intron | 30.0% | |
| AATATGGCATAATCATGAAC+AGG | - | chr8_4:7944110-7944129 | None:intergenic | 30.0% | |
| ! | CAATACAATATGCGCATTTT+AGG | - | chr8_4:7944224-7944243 | None:intergenic | 30.0% |
| AATGCGCATATTGTATTGAA+AGG | + | chr8_4:7944226-7944245 | Msa1311240:intron | 30.0% | |
| AAAATTGGGAGAGACTTTAT+TGG | + | chr8_4:7944300-7944319 | Msa1311240:CDS | 30.0% | |
| AAATTGGGAGAGACTTTATT+GGG | + | chr8_4:7944301-7944320 | Msa1311240:CDS | 30.0% | |
| AATTATGAACAATGCAGGAA+AGG | - | chr8_4:7944433-7944452 | None:intergenic | 30.0% | |
| AAAGCAATTATGAACAATGC+AGG | - | chr8_4:7944438-7944457 | None:intergenic | 30.0% | |
| TGGAAGAAATAGAGGAAAAT+TGG | + | chr8_4:7944790-7944809 | Msa1311240:intron | 30.0% | |
| AAGAAATAGAGGAAAATTGG+AGG | + | chr8_4:7944793-7944812 | Msa1311240:intron | 30.0% | |
| AGAAATAGAGGAAAATTGGA+GGG | + | chr8_4:7944794-7944813 | Msa1311240:intron | 30.0% | |
| AGGGAACTAAAAAATTGCAT+TGG | + | chr8_4:7944855-7944874 | Msa1311240:intron | 30.0% | |
| GAACTAAAAAATTGCATTGG+AGG | + | chr8_4:7944858-7944877 | Msa1311240:intron | 30.0% | |
| TAAAAAATTGCATTGGAGGA+GGG | + | chr8_4:7944862-7944881 | Msa1311240:intron | 30.0% | |
| TGTCTAATCTTGGTATTTCA+TGG | + | chr8_4:7945130-7945149 | Msa1311240:intron | 30.0% | |
| ! | TACCTTGTTATATTCCATCT+GGG | - | chr8_4:7945175-7945194 | None:intergenic | 30.0% |
| ! | ATACCTTGTTATATTCCATC+TGG | - | chr8_4:7945176-7945195 | None:intergenic | 30.0% |
| AGATGGAATATAACAAGGTA+TGG | + | chr8_4:7945175-7945194 | Msa1311240:intron | 30.0% | |
| ! | TATTGTTATTAGTTGGCATC+TGG | + | chr8_4:7945383-7945402 | Msa1311240:intron | 30.0% |
| ! | ATTGTTATTAGTTGGCATCT+GGG | + | chr8_4:7945384-7945403 | Msa1311240:intron | 30.0% |
| TGATGATTGTATTGTAATGC+AGG | + | chr8_4:7945501-7945520 | Msa1311240:intron | 30.0% | |
| TTCTGTCTCTAACAAAATTC+AGG | - | chr8_4:7945528-7945547 | None:intergenic | 30.0% | |
| ! | GTTAACTTTCTCGAAAGTAT+CGG | - | chr8_4:7945554-7945573 | None:intergenic | 30.0% |
| !! | CATTTAAATGGGTTGAATTC+AGG | - | chr8_4:7945689-7945708 | None:intergenic | 30.0% |
| CTGAATTCAACCCATTTAAA+TGG | + | chr8_4:7945687-7945706 | Msa1311240:intron | 30.0% | |
| !! | ACACTTTGTTATTATAGCAG+TGG | + | chr8_4:7945742-7945761 | Msa1311240:intron | 30.0% |
| ACAAATCAACCATTAACCAA+AGG | - | chr8_4:7945928-7945947 | None:intergenic | 30.0% | |
| TTTCTTTGATTACGTACTGA+AGG | + | chr8_4:7946123-7946142 | Msa1311240:intron | 30.0% | |
| ! | AAACATAGTGAGCCTTTTAA+TGG | + | chr8_4:7946213-7946232 | Msa1311240:intron | 30.0% |
| !! | AAACATACCATTAGCTTTCT+AGG | - | chr8_4:7946280-7946299 | None:intergenic | 30.0% |
| TAGAAAGCTAATGGTATGTT+TGG | + | chr8_4:7946279-7946298 | Msa1311240:intron | 30.0% | |
| AGGGTGGAATGTAATAATAT+AGG | - | chr8_4:7946378-7946397 | None:intergenic | 30.0% | |
| !!! | TTTTTTGAAGACCGTATGTT+TGG | - | chr8_4:7946412-7946431 | None:intergenic | 30.0% |
| AAGATTAATAGAGAGACACT+TGG | + | chr8_4:7946432-7946451 | Msa1311240:intron | 30.0% | |
| TGAAGACTAAATGTTTGGAT+TGG | - | chr8_4:7946534-7946553 | None:intergenic | 30.0% | |
| !!! | AAAATTTTAATAGAGGCGCT+TGG | + | chr8_4:7946553-7946572 | Msa1311240:intron | 30.0% |
| !!! | GATATTTTAGCCAAACAGAA+AGG | + | chr8_4:7946814-7946833 | Msa1311240:three_prime_UTR | 30.0% |
| AGCAAAAATGTTAAGTGAGA+AGG | - | chr8_4:7946899-7946918 | None:intergenic | 30.0% | |
| TTCAACAATTCGTTACTGAA+GGG | - | chr8_4:7946990-7947009 | None:intergenic | 30.0% | |
| GGATTGGATTTGAATGGAAT+TGG | - | chr8_4:7942677-7942696 | None:intergenic | 35.0% | |
| !! | TAGCATGGATTGGATTTGAA+TGG | - | chr8_4:7942683-7942702 | None:intergenic | 35.0% |
| ! | ACTGTTTACGTCGTTTGTTA+GGG | - | chr8_4:7942936-7942955 | None:intergenic | 35.0% |
| AACTGTTTACGTCGTTTGTT+AGG | - | chr8_4:7942937-7942956 | None:intergenic | 35.0% | |
| TAACAGATTCCTTAAGAACG+AGG | - | chr8_4:7942987-7943006 | None:intergenic | 35.0% | |
| TATTGACATAAGCACTTGTG+AGG | + | chr8_4:7943340-7943359 | Msa1311240:intron | 35.0% | |
| TCAGGATAGCTTATGAAAAC+AGG | + | chr8_4:7943416-7943435 | Msa1311240:intron | 35.0% | |
| !! | ACTCTAGAACATCAGAAACT+AGG | - | chr8_4:7943550-7943569 | None:intergenic | 35.0% |
| !! | TTCTAGAGTAGTATGAAGAC+AGG | + | chr8_4:7943561-7943580 | Msa1311240:intron | 35.0% |
| ! | TCTAGAGTAGTATGAAGACA+GGG | + | chr8_4:7943562-7943581 | Msa1311240:intron | 35.0% |
| !! | GAAGACAGGGTATCTTTTTA+AGG | + | chr8_4:7943575-7943594 | Msa1311240:intron | 35.0% |
| !! | AAGCCTTGTTCCACTAAATT+GGG | + | chr8_4:7943649-7943668 | Msa1311240:intron | 35.0% |
| TAAATTGGGGTCGATTACAT+TGG | + | chr8_4:7943663-7943682 | Msa1311240:intron | 35.0% | |
| CGATTACATTGGTCAAATGA+CGG | + | chr8_4:7943674-7943693 | Msa1311240:intron | 35.0% | |
| TCAAAGGAATAACATGGCAA+AGG | + | chr8_4:7943979-7943998 | Msa1311240:intron | 35.0% | |
| CCAACACAAACAAGTCAATA+TGG | - | chr8_4:7944126-7944145 | None:intergenic | 35.0% | |
| !! | CCATATTGACTTGTTTGTGT+TGG | + | chr8_4:7944123-7944142 | Msa1311240:intron | 35.0% |
| !!! | CGCATTTTAGGACAATAACT+AGG | - | chr8_4:7944212-7944231 | None:intergenic | 35.0% |
| ATTGAAAGGAACATGATCCT+TGG | + | chr8_4:7944240-7944259 | Msa1311240:intron | 35.0% | |
| ! | GTTTCTCTAACAAACTTGCT+CGG | + | chr8_4:7944330-7944349 | Msa1311240:CDS | 35.0% |
| ! | TTTCTCTAACAAACTTGCTC+GGG | + | chr8_4:7944331-7944350 | Msa1311240:CDS | 35.0% |
| ATGAAGATTTCTCTCCTTAC+AGG | + | chr8_4:7944387-7944406 | Msa1311240:CDS | 35.0% | |
| ! | GAGATTTTCATGCCAAAGAA+AGG | + | chr8_4:7944519-7944538 | Msa1311240:intron | 35.0% |
| GGAAAAAAGGAATGAACAAG+TGG | + | chr8_4:7944770-7944789 | Msa1311240:intron | 35.0% | |
| TGAACAAGTGGAAGAAATAG+AGG | + | chr8_4:7944782-7944801 | Msa1311240:intron | 35.0% | |
| GAAATAGAGGAAAATTGGAG+GGG | + | chr8_4:7944795-7944814 | Msa1311240:intron | 35.0% | |
| ! | TACTAAACCCTTCTCTTTTG+AGG | + | chr8_4:7944835-7944854 | Msa1311240:intron | 35.0% |
| ! | ACTAAACCCTTCTCTTTTGA+GGG | + | chr8_4:7944836-7944855 | Msa1311240:intron | 35.0% |
| TTAGTTCCCTCAAAAGAGAA+GGG | - | chr8_4:7944845-7944864 | None:intergenic | 35.0% | |
| ! | TTTAGTTCCCTCAAAAGAGA+AGG | - | chr8_4:7944846-7944865 | None:intergenic | 35.0% |
| CTAAAAAATTGCATTGGAGG+AGG | + | chr8_4:7944861-7944880 | Msa1311240:intron | 35.0% | |
| GTGGAAAATATGAGGGAAAA+TGG | - | chr8_4:7945036-7945055 | None:intergenic | 35.0% | |
| CAAACAAAGCCTAAGTGATA+GGG | + | chr8_4:7945093-7945112 | Msa1311240:intron | 35.0% | |
| AAACAAAGCCTAAGTGATAG+GGG | + | chr8_4:7945094-7945113 | Msa1311240:intron | 35.0% | |
| ATGGATATGGTGTCTAATCT+TGG | + | chr8_4:7945120-7945139 | Msa1311240:intron | 35.0% | |
| TTGGTATTTCATGGCATTTC+AGG | + | chr8_4:7945139-7945158 | Msa1311240:intron | 35.0% | |
| ! | ACCTTGTTATATTCCATCTG+GGG | - | chr8_4:7945174-7945193 | None:intergenic | 35.0% |
| GAAGGTTTATCATCTTTGAG+AGG | + | chr8_4:7945320-7945339 | Msa1311240:intron | 35.0% | |
| ! | TTATCATCTTTGAGAGGTGA+TGG | + | chr8_4:7945326-7945345 | Msa1311240:intron | 35.0% |
| TATTATAGCAGTGGTACTGT+TGG | + | chr8_4:7945751-7945770 | Msa1311240:intron | 35.0% | |
| ATGTCTAACATCAAAAGCTC+AGG | - | chr8_4:7945812-7945831 | None:intergenic | 35.0% | |
| ATCAGAGAGTAGATACCTTT+AGG | + | chr8_4:7945902-7945921 | Msa1311240:intron | 35.0% | |
| AGCTAATGGTATGTTTGGAT+TGG | + | chr8_4:7946284-7946303 | Msa1311240:intron | 35.0% | |
| ! | TAATGGTATGTTTGGATTGG+TGG | + | chr8_4:7946287-7946306 | Msa1311240:intron | 35.0% |
| !! | TATGTTTGGATTGGTGGTAT+AGG | + | chr8_4:7946293-7946312 | Msa1311240:intron | 35.0% |
| !! | ATGTTTGGATTGGTGGTATA+GGG | + | chr8_4:7946294-7946313 | Msa1311240:intron | 35.0% |
| ! | AGACTAAATGTTTGGATTGG+TGG | - | chr8_4:7946531-7946550 | None:intergenic | 35.0% |
| ATCGATCTGTATTTAGTGGT+TGG | - | chr8_4:7946797-7946816 | None:intergenic | 35.0% | |
| ! | CCTTTTGATACCTTTCTGTT+TGG | - | chr8_4:7946827-7946846 | None:intergenic | 35.0% |
| !! | CCAAACAGAAAGGTATCAAA+AGG | + | chr8_4:7946824-7946843 | Msa1311240:three_prime_UTR | 35.0% |
| TCAACAATTCGTTACTGAAG+GGG | - | chr8_4:7946989-7947008 | None:intergenic | 35.0% | |
| CTTCAACAATTCGTTACTGA+AGG | - | chr8_4:7946991-7947010 | None:intergenic | 35.0% | |
| CTTCAGTAACGAATTGTTGA+AGG | + | chr8_4:7946989-7947008 | Msa1311240:three_prime_UTR | 35.0% | |
| ACCTCTTCCGCTTAAAAAAG+CGG | + | chr8_4:7942813-7942832 | Msa1311240:CDS | 40.0% | |
| !!! | CTTTCCTCCGCTTTTTTAAG+CGG | - | chr8_4:7942823-7942842 | None:intergenic | 40.0% |
| TTGTTAGGGATATTCTCACG+AGG | - | chr8_4:7942922-7942941 | None:intergenic | 40.0% | |
| GTATGTTGTGTGTTAGACAC+TGG | + | chr8_4:7943227-7943246 | Msa1311240:intron | 40.0% | |
| CAATTTAGTGGAACAAGGCT+TGG | - | chr8_4:7943650-7943669 | None:intergenic | 40.0% | |
| !! | CAAGCCTTGTTCCACTAAAT+TGG | + | chr8_4:7943648-7943667 | Msa1311240:intron | 40.0% |
| !! | AGCCTTGTTCCACTAAATTG+GGG | + | chr8_4:7943650-7943669 | Msa1311240:intron | 40.0% |
| TGTAATCGACCCCAATTTAG+TGG | - | chr8_4:7943662-7943681 | None:intergenic | 40.0% | |
| ! | AACATGATCCTTGGTGCAAA+AGG | + | chr8_4:7944249-7944268 | Msa1311240:CDS | 40.0% |
| ! | TCCTTGGTGCAAAAGGTATA+TGG | + | chr8_4:7944256-7944275 | Msa1311240:CDS | 40.0% |
| ! | TCCATATACCTTTTGCACCA+AGG | - | chr8_4:7944260-7944279 | None:intergenic | 40.0% |
| TGTGACTCAGTTCCTTTCTT+TGG | - | chr8_4:7944534-7944553 | None:intergenic | 40.0% | |
| TTATCATCTCTGTACTCCCT+TGG | + | chr8_4:7944586-7944605 | Msa1311240:intron | 40.0% | |
| AACAGAAAATCCAGCACCAA+GGG | - | chr8_4:7944605-7944624 | None:intergenic | 40.0% | |
| !!! | CAGCATTGCATTGTTTTTGC+TGG | + | chr8_4:7944666-7944685 | Msa1311240:intron | 40.0% |
| !! | TAAGGCTTTGTTTGCGAGTT+TGG | + | chr8_4:7944724-7944743 | Msa1311240:intron | 40.0% |
| TTGAGGGGTGGAAAATATGA+GGG | - | chr8_4:7945043-7945062 | None:intergenic | 40.0% | |
| TTTGAGGGGTGGAAAATATG+AGG | - | chr8_4:7945044-7945063 | None:intergenic | 40.0% | |
| ! | CTTTGTTTGCGAGTTTCGAT+AGG | - | chr8_4:7945082-7945101 | None:intergenic | 40.0% |
| GCAAACAAAGCCTAAGTGAT+AGG | + | chr8_4:7945092-7945111 | Msa1311240:intron | 40.0% | |
| AACAAAGCCTAAGTGATAGG+GGG | + | chr8_4:7945095-7945114 | Msa1311240:intron | 40.0% | |
| ACCCCAGATGGAATATAACA+AGG | + | chr8_4:7945170-7945189 | Msa1311240:intron | 40.0% | |
| !! | ATCTTTGAGAGGTGATGGAT+GGG | + | chr8_4:7945331-7945350 | Msa1311240:intron | 40.0% |
| ! | TCAGACAGAAAGTACAACAC+AGG | - | chr8_4:7945484-7945503 | None:intergenic | 40.0% |
| ATGACAGAGAGAGAAGAATG+AGG | + | chr8_4:7945596-7945615 | Msa1311240:three_prime_UTR | 40.0% | |
| TGACAGAGAGAGAAGAATGA+GGG | + | chr8_4:7945597-7945616 | Msa1311240:three_prime_UTR | 40.0% | |
| AGTAGATACCTTTAGGCCTT+TGG | + | chr8_4:7945909-7945928 | Msa1311240:intron | 40.0% | |
| ACCTTTAGGCCTTTGGTTAA+TGG | + | chr8_4:7945916-7945935 | Msa1311240:intron | 40.0% | |
| ACCATTAACCAAAGGCCTAA+AGG | - | chr8_4:7945920-7945939 | None:intergenic | 40.0% | |
| CTAGGATCTGCACCATTAAA+AGG | - | chr8_4:7946228-7946247 | None:intergenic | 40.0% | |
| TGGTGATCCTAGAAAGCTAA+TGG | + | chr8_4:7946270-7946289 | Msa1311240:intron | 40.0% | |
| ! | ATTGGTGGTATAGGGTAGAA+TGG | + | chr8_4:7946302-7946321 | Msa1311240:intron | 40.0% |
| TGGTATAGGGTAGAATGGAT+GGG | + | chr8_4:7946307-7946326 | Msa1311240:intron | 40.0% | |
| TAGAATGGATGGGAATGAGA+TGG | + | chr8_4:7946317-7946336 | Msa1311240:intron | 40.0% | |
| !! | ATGTTTGGATTGGTGGTGTA+GGG | - | chr8_4:7946397-7946416 | None:intergenic | 40.0% |
| !! | TATGTTTGGATTGGTGGTGT+AGG | - | chr8_4:7946398-7946417 | None:intergenic | 40.0% |
| ACACCACCAATCCAAACATA+CGG | + | chr8_4:7946398-7946417 | Msa1311240:intron | 40.0% | |
| TGAAGACCGTATGTTTGGAT+TGG | - | chr8_4:7946407-7946426 | None:intergenic | 40.0% | |
| GCAACGTACAATAAGTGACA+GGG | - | chr8_4:7946604-7946623 | None:intergenic | 40.0% | |
| AGCAACGTACAATAAGTGAC+AGG | - | chr8_4:7946605-7946624 | None:intergenic | 40.0% | |
| ! | GCTGATTCTCATGATTCAGA+AGG | + | chr8_4:7946765-7946784 | Msa1311240:three_prime_UTR | 40.0% |
| ATTCTCATGATTCAGAAGGC+TGG | + | chr8_4:7946769-7946788 | Msa1311240:three_prime_UTR | 40.0% | |
| ATGTTGACAGAGAGATTGTC+TGG | + | chr8_4:7946945-7946964 | Msa1311240:three_prime_UTR | 40.0% | |
| CAACAATTCGTTACTGAAGG+GGG | - | chr8_4:7946988-7947007 | None:intergenic | 40.0% | |
| TGGTGAGAGATAGCATGGAT+TGG | - | chr8_4:7942693-7942712 | None:intergenic | 45.0% | |
| !!! | TCCGCTTTTTTAAGCGGAAG+AGG | - | chr8_4:7942817-7942836 | None:intergenic | 45.0% |
| TCTTCCGCTTAAAAAAGCGG+AGG | + | chr8_4:7942816-7942835 | Msa1311240:CDS | 45.0% | |
| AAGCGGAGGAAAGATCAGAA+TGG | + | chr8_4:7942830-7942849 | Msa1311240:CDS | 45.0% | |
| !! | TCAGAATGGTGGATAGTCGA+CGG | + | chr8_4:7942844-7942863 | Msa1311240:CDS | 45.0% |
| GACGGTGAAATGCACGAAAT+CGG | + | chr8_4:7942862-7942881 | Msa1311240:CDS | 45.0% | |
| TAGAACTCGCCTCGTTCTTA+AGG | + | chr8_4:7942975-7942994 | Msa1311240:CDS | 45.0% | |
| TTGTGTGTTAGACACTGGAC+AGG | + | chr8_4:7943232-7943251 | Msa1311240:intron | 45.0% | |
| !! | AGGCGTCGATTAGAAGTGTT+GGG | + | chr8_4:7943252-7943271 | Msa1311240:intron | 45.0% |
| GACCCCAATTTAGTGGAACA+AGG | - | chr8_4:7943655-7943674 | None:intergenic | 45.0% | |
| GAGAGACTTTATTGGGACGA+GGG | + | chr8_4:7944308-7944327 | Msa1311240:CDS | 45.0% | |
| GCAGGAAAGGAGAAAAACGA+CGG | - | chr8_4:7944420-7944439 | None:intergenic | 45.0% | |
| GAACAGAAAATCCAGCACCA+AGG | - | chr8_4:7944606-7944625 | None:intergenic | 45.0% | |
| !! | GCTTTGTTTGCGAGTTTGGA+GGG | + | chr8_4:7944728-7944747 | Msa1311240:intron | 45.0% |
| ! | CTTTGTTTGCGAGTTTGGAG+GGG | + | chr8_4:7944729-7944748 | Msa1311240:intron | 45.0% |
| ATAGAGGAAAATTGGAGGGG+AGG | + | chr8_4:7944798-7944817 | Msa1311240:intron | 45.0% | |
| TAGAGGAAAATTGGAGGGGA+GGG | + | chr8_4:7944799-7944818 | Msa1311240:intron | 45.0% | |
| ! | ATTGCATTGGAGGAGGGTTT+TGG | + | chr8_4:7944868-7944887 | Msa1311240:intron | 45.0% |
| ! | TTGCATTGGAGGAGGGTTTT+GGG | + | chr8_4:7944869-7944888 | Msa1311240:intron | 45.0% |
| TTTGCGAGTTTCGATAGGAG+GGG | - | chr8_4:7945077-7945096 | None:intergenic | 45.0% | |
| GTTTGCGAGTTTCGATAGGA+GGG | - | chr8_4:7945078-7945097 | None:intergenic | 45.0% | |
| TGTTTGCGAGTTTCGATAGG+AGG | - | chr8_4:7945079-7945098 | None:intergenic | 45.0% | |
| !! | CATCTTTGAGAGGTGATGGA+TGG | + | chr8_4:7945330-7945349 | Msa1311240:intron | 45.0% |
| GAGAGAAGAATGAGGGAGAA+AGG | + | chr8_4:7945604-7945623 | Msa1311240:three_prime_UTR | 45.0% | |
| ! | CTGTAGTGTTGAGAGAAGCT+TGG | + | chr8_4:7945966-7945985 | Msa1311240:intron | 45.0% |
| TAATGGTGCAGATCCTAGAG+AGG | + | chr8_4:7946230-7946249 | Msa1311240:intron | 45.0% | |
| TGCAGATCCTAGAGAGGAAA+TGG | + | chr8_4:7946236-7946255 | Msa1311240:intron | 45.0% | |
| !! | AGAGGTACCATTTCCTCTCT+AGG | - | chr8_4:7946246-7946265 | None:intergenic | 45.0% |
| TAGAGAGGAAATGGTACCTC+TGG | + | chr8_4:7946245-7946264 | Msa1311240:intron | 45.0% | |
| AGGAAATGGTACCTCTGGAT+TGG | + | chr8_4:7946250-7946269 | Msa1311240:intron | 45.0% | |
| !! | TTCTAGGATCACCAATCCAG+AGG | - | chr8_4:7946264-7946283 | None:intergenic | 45.0% |
| GTGGTATAGGGTAGAATGGA+TGG | + | chr8_4:7946306-7946325 | Msa1311240:intron | 45.0% | |
| GGATGGGAATGAGATGGAAT+TGG | + | chr8_4:7946323-7946342 | Msa1311240:intron | 45.0% | |
| ! | AGACCGTATGTTTGGATTGG+TGG | - | chr8_4:7946404-7946423 | None:intergenic | 45.0% |
| !!! | TGATTTATATTTATATATTT+TGG | - | chr8_4:7943145-7943164 | None:intergenic | 5.0% |
| !!! | TATTTTTAATTAATTTAAGA+AGG | + | chr8_4:7945302-7945321 | Msa1311240:intron | 5.0% |
| ! | GCGTTTGGTGAGAGATAGCA+TGG | - | chr8_4:7942698-7942717 | None:intergenic | 50.0% |
| AAAGAAAGGGGGTGAGAGAG+GGG | - | chr8_4:7942723-7942742 | None:intergenic | 50.0% | |
| GAAAGAAAGGGGGTGAGAGA+GGG | - | chr8_4:7942724-7942743 | None:intergenic | 50.0% | |
| AGAAAGAAAGGGGGTGAGAG+AGG | - | chr8_4:7942725-7942744 | None:intergenic | 50.0% | |
| ! | TGGGAGGTGCGAGAAAGAAA+GGG | - | chr8_4:7942736-7942755 | None:intergenic | 50.0% |
| ! | ATGGGAGGTGCGAGAAAGAA+AGG | - | chr8_4:7942737-7942756 | None:intergenic | 50.0% |
| ! | TTGAGGAGAGCGGAGTTGAT+GGG | - | chr8_4:7942755-7942774 | None:intergenic | 50.0% |
| ! | AGCGGAAGAGGTGTAGACTT+GGG | - | chr8_4:7942805-7942824 | None:intergenic | 50.0% |
| ! | AAGCGGAAGAGGTGTAGACT+TGG | - | chr8_4:7942806-7942825 | None:intergenic | 50.0% |
| CGGAGGAAAGATCAGAATGG+TGG | + | chr8_4:7942833-7942852 | Msa1311240:CDS | 50.0% | |
| !! | CAGGCGTCGATTAGAAGTGT+TGG | + | chr8_4:7943251-7943270 | Msa1311240:intron | 50.0% |
| !! | GGCGTCGATTAGAAGTGTTG+GGG | + | chr8_4:7943253-7943272 | Msa1311240:intron | 50.0% |
| GGAGAGACTTTATTGGGACG+AGG | + | chr8_4:7944307-7944326 | Msa1311240:CDS | 50.0% | |
| GGAAAGGAGAAAAACGACGG+AGG | - | chr8_4:7944417-7944436 | None:intergenic | 50.0% | |
| !! | GGCTTTGTTTGCGAGTTTGG+AGG | + | chr8_4:7944727-7944746 | Msa1311240:intron | 50.0% |
| TTTGCGAGTTTGGAGGGGAA+GGG | + | chr8_4:7944734-7944753 | Msa1311240:intron | 50.0% | |
| AGGGGAAGGCTTGGGAAAAA+AGG | + | chr8_4:7944757-7944776 | Msa1311240:intron | 50.0% | |
| ! | TGCATTGGAGGAGGGTTTTG+GGG | + | chr8_4:7944870-7944889 | Msa1311240:intron | 50.0% |
| GAGTTTCGATAGGAGGGGAA+GGG | - | chr8_4:7945072-7945091 | None:intergenic | 50.0% | |
| TCCATGACCCCCTATCACTT+AGG | - | chr8_4:7945105-7945124 | None:intergenic | 50.0% | |
| GTGATAGGGGGTCATGGATA+TGG | + | chr8_4:7945107-7945126 | Msa1311240:intron | 50.0% | |
| CAGGAATAGAAGACCCCAGA+TGG | + | chr8_4:7945158-7945177 | Msa1311240:intron | 50.0% | |
| !! | TGAGAGGTGATGGATGGGAA+AGG | + | chr8_4:7945336-7945355 | Msa1311240:intron | 50.0% |
| TCTGCTCATCACCACGATGA+GGG | - | chr8_4:7945779-7945798 | None:intergenic | 50.0% | |
| ATCTGCTCATCACCACGATG+AGG | - | chr8_4:7945780-7945799 | None:intergenic | 50.0% | |
| !! | TTTGGATTGGTGGTGTAGGG+TGG | - | chr8_4:7946394-7946413 | None:intergenic | 50.0% |
| GCAACAGATCCTCCATGCAT+GGG | - | chr8_4:7946747-7946766 | None:intergenic | 50.0% | |
| AGCAACAGATCCTCCATGCA+TGG | - | chr8_4:7946748-7946767 | None:intergenic | 50.0% | |
| ! | GGAGGTGCGAGAAAGAAAGG+GGG | - | chr8_4:7942734-7942753 | None:intergenic | 55.0% |
| ! | GGGAGGTGCGAGAAAGAAAG+GGG | - | chr8_4:7942735-7942754 | None:intergenic | 55.0% |
| GTTGAGGAGAGCGGAGTTGA+TGG | - | chr8_4:7942756-7942775 | None:intergenic | 55.0% | |
| ! | GAAGAGGTGTAGACTTGGGG+CGG | - | chr8_4:7942801-7942820 | None:intergenic | 55.0% |
| ! | GCGGAAGAGGTGTAGACTTG+GGG | - | chr8_4:7942804-7942823 | None:intergenic | 55.0% |
| ATCACGAACCGTTCACGTGG+CGG | - | chr8_4:7942898-7942917 | None:intergenic | 55.0% | |
| GGAATCACGAACCGTTCACG+TGG | - | chr8_4:7942901-7942920 | None:intergenic | 55.0% | |
| ACGACGGAGGCAAACCTGTA+AGG | - | chr8_4:7944404-7944423 | None:intergenic | 55.0% | |
| ! | TCTCTGTACTCCCTTGGTGC+TGG | + | chr8_4:7944592-7944611 | Msa1311240:intron | 55.0% |
| GTTTGCGAGTTTGGAGGGGA+AGG | + | chr8_4:7944733-7944752 | Msa1311240:intron | 55.0% | |
| !! | GCATTGGAGGAGGGTTTTGG+GGG | + | chr8_4:7944871-7944890 | Msa1311240:intron | 55.0% |
| !!! | CATTGGAGGAGGGTTTTGGG+GGG | + | chr8_4:7944872-7944891 | Msa1311240:intron | 55.0% |
| !!! | ATTGGAGGAGGGTTTTGGGG+GGG | + | chr8_4:7944873-7944892 | Msa1311240:intron | 55.0% |
| !!! | GGTTTTGGGGGGGTTTTGGA+GGG | + | chr8_4:7944883-7944902 | Msa1311240:intron | 55.0% |
| ! | AGGGGAAGGGAAGGCTTTGA+GGG | - | chr8_4:7945059-7945078 | None:intergenic | 55.0% |
| TTCGATAGGAGGGGAAGGGA+AGG | - | chr8_4:7945068-7945087 | None:intergenic | 55.0% | |
| CGAGTTTCGATAGGAGGGGA+AGG | - | chr8_4:7945073-7945092 | None:intergenic | 55.0% | |
| GCCTAAGTGATAGGGGGTCA+TGG | + | chr8_4:7945101-7945120 | Msa1311240:intron | 55.0% | |
| ! | TACTGTTGGTGCCCTCATCG+TGG | + | chr8_4:7945765-7945784 | Msa1311240:intron | 55.0% |
| GCAGCATTTGCTCCCATGCA+TGG | + | chr8_4:7946732-7946751 | Msa1311240:intron | 55.0% | |
| GCATTTGCTCCCATGCATGG+AGG | + | chr8_4:7946735-7946754 | Msa1311240:intron | 55.0% | |
| ACCTCGTGTGATAGCAGGCA+TGG | - | chr8_4:7946865-7946884 | None:intergenic | 55.0% | |
| ATGCCTGCTATCACACGAGG+TGG | + | chr8_4:7946864-7946883 | Msa1311240:three_prime_UTR | 55.0% | |
| TGCCTGCTATCACACGAGGT+GGG | + | chr8_4:7946865-7946884 | Msa1311240:three_prime_UTR | 55.0% | |
| !! | AGGAGAGCGGAGTTGATGGG+AGG | - | chr8_4:7942752-7942771 | None:intergenic | 60.0% |
| ATCACGTGCCGCCACGTGAA+CGG | + | chr8_4:7942887-7942906 | Msa1311240:CDS | 60.0% | |
| CGAGTTTGGAGGGGAAGGGA+GGG | + | chr8_4:7944738-7944757 | Msa1311240:intron | 60.0% | |
| GAGTTTGGAGGGGAAGGGAG+GGG | + | chr8_4:7944739-7944758 | Msa1311240:intron | 60.0% | |
| !!! | GGAGGGTTTTGGGGGGGTTT+TGG | + | chr8_4:7944879-7944898 | Msa1311240:intron | 60.0% |
| !!! | GGGTTTTGGGGGGGTTTTGG+AGG | + | chr8_4:7944882-7944901 | Msa1311240:intron | 60.0% |
| !! | GAAGGGAAGGCTTTGAGGGG+TGG | - | chr8_4:7945055-7945074 | None:intergenic | 60.0% |
| !! | GGGGAAGGGAAGGCTTTGAG+GGG | - | chr8_4:7945058-7945077 | None:intergenic | 60.0% |
| GAGGGGAAGGGAAGGCTTTG+AGG | - | chr8_4:7945060-7945079 | None:intergenic | 60.0% | |
| GCCATGCCTGCTATCACACG+AGG | + | chr8_4:7946861-7946880 | Msa1311240:three_prime_UTR | 60.0% | |
| GTCCCACCTCGTGTGATAGC+AGG | - | chr8_4:7946870-7946889 | None:intergenic | 60.0% | |
| !! | GGTGAGAGAGGGGAGGCGTT+TGG | - | chr8_4:7942713-7942732 | None:intergenic | 65.0% |
| GAAAGGGGGTGAGAGAGGGG+AGG | - | chr8_4:7942720-7942739 | None:intergenic | 65.0% | |
| TGTAGACTTGGGGCGGCGTC+TGG | - | chr8_4:7942794-7942813 | None:intergenic | 65.0% | |
| GCGAGTTTGGAGGGGAAGGG+AGG | + | chr8_4:7944737-7944756 | Msa1311240:intron | 65.0% | |
| TTGGAGGGGAAGGGAGGGGA+AGG | + | chr8_4:7944743-7944762 | Msa1311240:intron | 65.0% | |
| GGGAAGGGAGGGGAAGGCTT+GGG | + | chr8_4:7944749-7944768 | Msa1311240:intron | 65.0% | |
| ! | TTGGGGCGGCGTCTGGAGTG+GGG | - | chr8_4:7942787-7942806 | None:intergenic | 70.0% |
| ! | CTTGGGGCGGCGTCTGGAGT+GGG | - | chr8_4:7942788-7942807 | None:intergenic | 70.0% |
| ACTTGGGGCGGCGTCTGGAG+TGG | - | chr8_4:7942789-7942808 | None:intergenic | 70.0% | |
| GGGGAAGGGAGGGGAAGGCT+TGG | + | chr8_4:7944748-7944767 | Msa1311240:intron | 70.0% | |
| !! | GGGCGGCGGGTTGAGGAGAG+CGG | - | chr8_4:7942765-7942784 | None:intergenic | 75.0% |
| ! | TGGGGCGGCGTCTGGAGTGG+GGG | - | chr8_4:7942786-7942805 | None:intergenic | 75.0% |
| !!! | GAGTGGGGGGCGGCGGGTTG+AGG | - | chr8_4:7942772-7942791 | None:intergenic | 80.0% |
| !! | CGTCTGGAGTGGGGGGCGGC+GGG | - | chr8_4:7942778-7942797 | None:intergenic | 80.0% |
| !! | GCGTCTGGAGTGGGGGGCGG+CGG | - | chr8_4:7942779-7942798 | None:intergenic | 80.0% |
| !! | GCGGCGTCTGGAGTGGGGGG+CGG | - | chr8_4:7942782-7942801 | None:intergenic | 80.0% |
| !! | GGGGCGGCGTCTGGAGTGGG+GGG | - | chr8_4:7942785-7942804 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 7942543 | 7947148 | 7942543 | ID=Msa1311240;Name=Msa1311240 |
| chr8_4 | mRNA | 7942543 | 7947148 | 7942543 | ID=Msa1311240-mRNA-1;Parent=Msa1311240;Name=Msa1311240-mRNA-1;_AED=0.02;_eAED=0.02;_QI=154|0.66|1|1|1|1|4|509|157 |
| chr8_4 | exon | 7942543 | 7943002 | 7942543 | ID=Msa1311240-mRNA-1:exon:2902;Parent=Msa1311240-mRNA-1 |
| chr8_4 | exon | 7944248 | 7944408 | 7944248 | ID=Msa1311240-mRNA-1:exon:2903;Parent=Msa1311240-mRNA-1 |
| chr8_4 | exon | 7945523 | 7945625 | 7945523 | ID=Msa1311240-mRNA-1:exon:2904;Parent=Msa1311240-mRNA-1 |
| chr8_4 | exon | 7946736 | 7947148 | 7946736 | ID=Msa1311240-mRNA-1:exon:2905;Parent=Msa1311240-mRNA-1 |
| chr8_4 | five_prime_UTR | 7942543 | 7942696 | 7942543 | ID=Msa1311240-mRNA-1:five_prime_utr;Parent=Msa1311240-mRNA-1 |
| chr8_4 | CDS | 7942697 | 7943002 | 7942697 | ID=Msa1311240-mRNA-1:cds;Parent=Msa1311240-mRNA-1 |
| chr8_4 | CDS | 7944248 | 7944408 | 7944248 | ID=Msa1311240-mRNA-1:cds;Parent=Msa1311240-mRNA-1 |
| chr8_4 | CDS | 7945523 | 7945529 | 7945523 | ID=Msa1311240-mRNA-1:cds;Parent=Msa1311240-mRNA-1 |
| chr8_4 | three_prime_UTR | 7945530 | 7945625 | 7945530 | ID=Msa1311240-mRNA-1:three_prime_utr;Parent=Msa1311240-mRNA-1 |
| chr8_4 | three_prime_UTR | 7946736 | 7947148 | 7946736 | ID=Msa1311240-mRNA-1:three_prime_utr;Parent=Msa1311240-mRNA-1 |
| Gene Sequence |
| Protein sequence |
