Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1182870 | XP_003626873.1 | 95.855 | 193 | 7 | 1 | 1 | 192 | 1 | 193 | 1.45e-129 | 374 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1182870 | G7LEC5 | 95.855 | 193 | 7 | 1 | 1 | 192 | 1 | 193 | 6.93e-130 | 374 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0465060 | Msa1182870 | 0.814835 | 1.258571e-51 | -8.615850e-47 |
| Msa1007820 | Msa1182870 | 0.831925 | 1.265731e-55 | -8.615850e-47 |
| Msa1182870 | Msa1311240 | 0.849434 | 3.240989e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1182870 | MtrunA17_Chr8g0338571 | 95.855 | 193 | 7 | 1 | 1 | 192 | 1 | 193 | 1.34e-133 | 374 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1182870 | AT3G07440.1 | 68.912 | 193 | 59 | 1 | 1 | 192 | 1 | 193 | 1.92e-91 | 267 |
| Msa1182870 | AT3G07440.2 | 68.912 | 193 | 59 | 1 | 1 | 192 | 1 | 193 | 1.92e-91 | 267 |
| Msa1182870 | AT5G48530.1 | 70.202 | 198 | 50 | 4 | 1 | 192 | 1 | 195 | 2.12e-91 | 265 |
Find 57 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATGAAGATTTCTCTCCTTAC+AGG | 0.234397 | 8_1:-18032640 | Msa1182870:intron |
| TTCTGTCTCTAACAAAATTC+AGG | 0.242989 | 8_1:+18031502 | None:intergenic |
| ATAATGAACTTCGAGAAAAT+TGG | 0.245120 | 8_1:-18032742 | Msa1182870:CDS |
| ATTTCATTTCATGGCTAATT+TGG | 0.257790 | 8_1:+18034456 | None:intergenic |
| AAAATTGGGAGAGACTTTAT+TGG | 0.285983 | 8_1:-18032727 | Msa1182870:CDS |
| AACTGTTTACGTCGTTTGTT+AGG | 0.303562 | 8_1:+18034088 | None:intergenic |
| TGTAGACTTGGGGCGGCGTC+TGG | 0.321188 | 8_1:+18034231 | None:intergenic |
| TAGAACTCGCCTCGTTCTTA+AGG | 0.327073 | 8_1:-18034047 | Msa1182870:CDS |
| GGATTGGATTTGAATGGAAT+TGG | 0.339110 | 8_1:+18034348 | None:intergenic |
| CTTGGGGCGGCGTCTGGAGT+GGG | 0.351549 | 8_1:+18034237 | None:intergenic |
| TCCTTGGTGCAAAAGGTATA+TGG | 0.351865 | 8_1:-18032771 | Msa1182870:CDS |
| ACTTGGGGCGGCGTCTGGAG+TGG | 0.368410 | 8_1:+18034236 | None:intergenic |
| TTGGGGCGGCGTCTGGAGTG+GGG | 0.373155 | 8_1:+18034238 | None:intergenic |
| TGGGGCGGCGTCTGGAGTGG+GGG | 0.374341 | 8_1:+18034239 | None:intergenic |
| GGTGAGAGAGGGGAGGCGTT+TGG | 0.389367 | 8_1:+18034312 | None:intergenic |
| AAATTGGGAGAGACTTTATT+GGG | 0.392320 | 8_1:-18032726 | Msa1182870:CDS |
| ATACCTTGTTATATTCCATC+TGG | 0.396105 | 8_1:+18031854 | None:intergenic |
| ATGGGAGGTGCGAGAAAGAA+AGG | 0.414335 | 8_1:+18034288 | None:intergenic |
| GACGGTGAAATGCACGAAAT+CGG | 0.420520 | 8_1:-18034160 | Msa1182870:CDS |
| GTTGAGGAGAGCGGAGTTGA+TGG | 0.424023 | 8_1:+18034269 | None:intergenic |
| TAGCATGGATTGGATTTGAA+TGG | 0.430707 | 8_1:+18034342 | None:intergenic |
| TAATGAACTTCGAGAAAATT+GGG | 0.440405 | 8_1:-18032741 | Msa1182870:CDS |
| GGGCGGCGGGTTGAGGAGAG+CGG | 0.445382 | 8_1:+18034260 | None:intergenic |
| AACATGATCCTTGGTGCAAA+AGG | 0.461729 | 8_1:-18032778 | Msa1182870:CDS |
| GGGGCGGCGTCTGGAGTGGG+GGG | 0.475207 | 8_1:+18034240 | None:intergenic |
| TGGGAGGTGCGAGAAAGAAA+GGG | 0.477251 | 8_1:+18034289 | None:intergenic |
| TTTCTCTAACAAACTTGCTC+GGG | 0.483782 | 8_1:-18032696 | Msa1182870:CDS |
| TACCTTGTTATATTCCATCT+GGG | 0.489048 | 8_1:+18031855 | None:intergenic |
| AGCGGAAGAGGTGTAGACTT+GGG | 0.496988 | 8_1:+18034220 | None:intergenic |
| GTTAACTTTCTCGAAAGTAT+CGG | 0.504396 | 8_1:+18031476 | None:intergenic |
| ACTGTTTACGTCGTTTGTTA+GGG | 0.504411 | 8_1:+18034089 | None:intergenic |
| GTTTCTCTAACAAACTTGCT+CGG | 0.513026 | 8_1:-18032697 | Msa1182870:CDS |
| TTGAGGAGAGCGGAGTTGAT+GGG | 0.514920 | 8_1:+18034270 | None:intergenic |
| ATCACGTGCCGCCACGTGAA+CGG | 0.516179 | 8_1:-18034135 | Msa1182870:CDS |
| ACGACGGAGGCAAACCTGTA+AGG | 0.532996 | 8_1:+18032626 | None:intergenic |
| GGGAGGTGCGAGAAAGAAAG+GGG | 0.534270 | 8_1:+18034290 | None:intergenic |
| AAGCGGAAGAGGTGTAGACT+TGG | 0.542120 | 8_1:+18034219 | None:intergenic |
| TAAGAAGAAGATAACAACTC+TGG | 0.550634 | 8_1:+18034422 | None:intergenic |
| TGGTGAGAGATAGCATGGAT+TGG | 0.561063 | 8_1:+18034332 | None:intergenic |
| GGAGAGACTTTATTGGGACG+AGG | 0.562141 | 8_1:-18032720 | Msa1182870:CDS |
| ACCTTGTTATATTCCATCTG+GGG | 0.567042 | 8_1:+18031856 | None:intergenic |
| GCGTTTGGTGAGAGATAGCA+TGG | 0.568339 | 8_1:+18034327 | None:intergenic |
| CAGGAATAGAAGACCCCAGA+TGG | 0.570582 | 8_1:-18031869 | Msa1182870:CDS |
| ATTGAAAGGAACATGATCCT+TGG | 0.595477 | 8_1:-18032787 | Msa1182870:intron |
| GCGGAAGAGGTGTAGACTTG+GGG | 0.622024 | 8_1:+18034221 | None:intergenic |
| GAGAGACTTTATTGGGACGA+GGG | 0.623420 | 8_1:-18032719 | Msa1182870:CDS |
| CGGAGGAAAGATCAGAATGG+TGG | 0.635023 | 8_1:-18034189 | Msa1182870:CDS |
| TCAGAATGGTGGATAGTCGA+CGG | 0.642446 | 8_1:-18034178 | Msa1182870:CDS |
| ATCACGAACCGTTCACGTGG+CGG | 0.647450 | 8_1:+18034127 | None:intergenic |
| GAAGAGGTGTAGACTTGGGG+CGG | 0.649701 | 8_1:+18034224 | None:intergenic |
| GGAATCACGAACCGTTCACG+TGG | 0.656876 | 8_1:+18034124 | None:intergenic |
| GGAGGTGCGAGAAAGAAAGG+GGG | 0.669676 | 8_1:+18034291 | None:intergenic |
| ACCCCAGATGGAATATAACA+AGG | 0.670941 | 8_1:-18031857 | Msa1182870:intron |
| AAGCGGAGGAAAGATCAGAA+TGG | 0.676617 | 8_1:-18034192 | Msa1182870:CDS |
| AGGAGAGCGGAGTTGATGGG+AGG | 0.681071 | 8_1:+18034273 | None:intergenic |
| TTGTTAGGGATATTCTCACG+AGG | 0.696188 | 8_1:+18034103 | None:intergenic |
| TAACAGATTCCTTAAGAACG+AGG | 0.736915 | 8_1:+18034038 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAATGTATTTTAAGATTTA+GGG | - | chr8_1:18032188-18032207 | Msa1182870:intron | 10.0% |
| !! | GATTTAAATTTATTTATCTA+TGG | - | chr8_1:18032833-18032852 | Msa1182870:intron | 10.0% |
| !!! | AATTTATTATTGTTATTAGT+TGG | - | chr8_1:18034277-18034296 | Msa1182870:CDS | 10.0% |
| !!! | CAAAATGTATTTTAAGATTT+AGG | - | chr8_1:18032187-18032206 | Msa1182870:intron | 15.0% |
| !! | AAATTAAATAATGTCATGTT+TGG | + | chr8_1:18032426-18032445 | None:intergenic | 15.0% |
| !! | AAGTAGCAATAATAAAAATA+AGG | - | chr8_1:18032605-18032624 | Msa1182870:intron | 15.0% |
| !! | GAAACTTAAAATAAACATAA+TGG | + | chr8_1:18032649-18032668 | None:intergenic | 15.0% |
| !!! | TTGAAAATTTTTAAACTTAG+GGG | + | chr8_1:18032680-18032699 | None:intergenic | 15.0% |
| !!! | GTTGAAAATTTTTAAACTTA+GGG | + | chr8_1:18032681-18032700 | None:intergenic | 15.0% |
| !!! | AGTTGAAAATTTTTAAACTT+AGG | + | chr8_1:18032682-18032701 | None:intergenic | 15.0% |
| !!! | AAGTTTAAAAATTTTCAACT+TGG | - | chr8_1:18032682-18032701 | Msa1182870:CDS | 15.0% |
| !! | AACATAATATTAAAAGACAT+TGG | + | chr8_1:18032928-18032947 | None:intergenic | 15.0% |
| !!! | AGATTTTCAATTTCATTTCA+TGG | + | chr8_1:18031484-18031503 | None:intergenic | 20.0% |
| !! | TAGAAAACGAAAAAAATCTA+AGG | + | chr8_1:18031936-18031955 | None:intergenic | 20.0% |
| !! | ATACATAAGCACTTATATAA+AGG | - | chr8_1:18032378-18032397 | Msa1182870:intron | 20.0% |
| !!! | GTTTATTTTAAGTTTCAAGT+TGG | - | chr8_1:18032653-18032672 | Msa1182870:CDS | 20.0% |
| !! | TAACTTAAAATTTGACAGAA+AGG | + | chr8_1:18032739-18032758 | None:intergenic | 20.0% |
| !! | TATCTTTATAACTAGATCAA+AGG | - | chr8_1:18032864-18032883 | Msa1182870:intron | 20.0% |
| !! | TTAAATTTCTTCAGTCATTA+AGG | - | chr8_1:18033607-18033626 | Msa1182870:intron | 20.0% |
| ! | ATTTCATTTCATGGCTAATT+TGG | + | chr8_1:18031475-18031494 | None:intergenic | 25.0% |
| !!! | TATGATGATTTTGAGGTTTA+GGG | + | chr8_1:18031534-18031553 | None:intergenic | 25.0% |
| !!! | TTATGATGATTTTGAGGTTT+AGG | + | chr8_1:18031535-18031554 | None:intergenic | 25.0% |
| !! | TCATTTTCTCAAATTACTAC+GGG | + | chr8_1:18032089-18032108 | None:intergenic | 25.0% |
| !!! | GTCATTTTCTCAAATTACTA+CGG | + | chr8_1:18032090-18032109 | None:intergenic | 25.0% |
| ! | ATAATGAACTTCGAGAAAAT+TGG | - | chr8_1:18033186-18033205 | Msa1182870:intron | 25.0% |
| ! | TAATGAACTTCGAGAAAATT+GGG | - | chr8_1:18033187-18033206 | Msa1182870:intron | 25.0% |
| ! | ATTGTTCATAATTGCTTTCT+TGG | - | chr8_1:18033341-18033360 | Msa1182870:intron | 25.0% |
| ! | TATACAAACAGATTCAAAGT+GGG | + | chr8_1:18034311-18034330 | None:intergenic | 25.0% |
| ! | TTATACAAACAGATTCAAAG+TGG | + | chr8_1:18034312-18034331 | None:intergenic | 25.0% |
| TAAGAAGAAGATAACAACTC+TGG | + | chr8_1:18031509-18031528 | None:intergenic | 30.0% | |
| !! | TGTTGCTTATGATGATTTTG+AGG | + | chr8_1:18031541-18031560 | None:intergenic | 30.0% |
| !! | CTCAGATTAGTTGATAATTC+AGG | - | chr8_1:18032007-18032026 | Msa1182870:intron | 30.0% |
| ! | TTTAAGATTTAGGGCTTGTT+TGG | - | chr8_1:18032197-18032216 | Msa1182870:intron | 30.0% |
| GTTTGTGAAAGTAACTTACA+TGG | - | chr8_1:18032276-18032295 | Msa1182870:intron | 30.0% | |
| ! | CATAATATGTTTTCAGCTTC+AGG | - | chr8_1:18032299-18032318 | Msa1182870:intron | 30.0% |
| ! | GTTAACTCTATCTTGTTATG+TGG | - | chr8_1:18032755-18032774 | Msa1182870:CDS | 30.0% |
| TCAACACAAACTTACTACTA+CGG | + | chr8_1:18032815-18032834 | None:intergenic | 30.0% | |
| ACTAGATCAAAGGAATAACA+TGG | - | chr8_1:18032874-18032893 | Msa1182870:intron | 30.0% | |
| TCCTAACTTTCATGATTAAG+TGG | - | chr8_1:18032947-18032966 | Msa1182870:intron | 30.0% | |
| ACCACTTAATCATGAAAGTT+AGG | + | chr8_1:18032951-18032970 | None:intergenic | 30.0% | |
| AATGTGAATGAGAAATGTGA+TGG | - | chr8_1:18032984-18033003 | Msa1182870:intron | 30.0% | |
| ATGTGAATGAGAAATGTGAT+GGG | - | chr8_1:18032985-18033004 | Msa1182870:intron | 30.0% | |
| AATATGGCATAATCATGAAC+AGG | + | chr8_1:18033011-18033030 | None:intergenic | 30.0% | |
| ! | CAATACAATATGCGCATTTT+AGG | + | chr8_1:18033125-18033144 | None:intergenic | 30.0% |
| AATGCGCATATTGTATTGAA+AGG | - | chr8_1:18033127-18033146 | Msa1182870:intron | 30.0% | |
| AAAATTGGGAGAGACTTTAT+TGG | - | chr8_1:18033201-18033220 | Msa1182870:intron | 30.0% | |
| AAATTGGGAGAGACTTTATT+GGG | - | chr8_1:18033202-18033221 | Msa1182870:intron | 30.0% | |
| AATTATGAACAATGCAGGAA+AGG | + | chr8_1:18033334-18033353 | None:intergenic | 30.0% | |
| AAAGCAATTATGAACAATGC+AGG | + | chr8_1:18033339-18033358 | None:intergenic | 30.0% | |
| TGGAAGAAATAGAGGAAAAT+TGG | - | chr8_1:18033691-18033710 | Msa1182870:intron | 30.0% | |
| AAGAAATAGAGGAAAATTGG+AGG | - | chr8_1:18033694-18033713 | Msa1182870:intron | 30.0% | |
| AGAAATAGAGGAAAATTGGA+GGG | - | chr8_1:18033695-18033714 | Msa1182870:intron | 30.0% | |
| AGGGAACTAAAAAATTGCAT+TGG | - | chr8_1:18033756-18033775 | Msa1182870:intron | 30.0% | |
| GAACTAAAAAATTGCATTGG+AGG | - | chr8_1:18033759-18033778 | Msa1182870:intron | 30.0% | |
| TAAAAAATTGCATTGGAGGA+GGG | - | chr8_1:18033763-18033782 | Msa1182870:intron | 30.0% | |
| TGTCTAATCTTGGTATTTCA+TGG | - | chr8_1:18034031-18034050 | Msa1182870:intron | 30.0% | |
| ! | TACCTTGTTATATTCCATCT+GGG | + | chr8_1:18034076-18034095 | None:intergenic | 30.0% |
| ! | ATACCTTGTTATATTCCATC+TGG | + | chr8_1:18034077-18034096 | None:intergenic | 30.0% |
| AGATGGAATATAACAAGGTA+TGG | - | chr8_1:18034076-18034095 | Msa1182870:CDS | 30.0% | |
| ! | TATTGTTATTAGTTGGCATC+TGG | - | chr8_1:18034284-18034303 | Msa1182870:CDS | 30.0% |
| ! | ATTGTTATTAGTTGGCATCT+GGG | - | chr8_1:18034285-18034304 | Msa1182870:CDS | 30.0% |
| TGATGATTGTATTGTAATGC+AGG | - | chr8_1:18034402-18034421 | Msa1182870:five_prime_UTR | 30.0% | |
| TTCTGTCTCTAACAAAATTC+AGG | + | chr8_1:18034429-18034448 | None:intergenic | 30.0% | |
| ! | GTTAACTTTCTCGAAAGTAT+CGG | + | chr8_1:18034455-18034474 | None:intergenic | 30.0% |
| GGATTGGATTTGAATGGAAT+TGG | + | chr8_1:18031583-18031602 | None:intergenic | 35.0% | |
| !! | TAGCATGGATTGGATTTGAA+TGG | + | chr8_1:18031589-18031608 | None:intergenic | 35.0% |
| ! | ACTGTTTACGTCGTTTGTTA+GGG | + | chr8_1:18031842-18031861 | None:intergenic | 35.0% |
| AACTGTTTACGTCGTTTGTT+AGG | + | chr8_1:18031843-18031862 | None:intergenic | 35.0% | |
| TAACAGATTCCTTAAGAACG+AGG | + | chr8_1:18031893-18031912 | None:intergenic | 35.0% | |
| TATTGACATAAGCACTTGTG+AGG | - | chr8_1:18032241-18032260 | Msa1182870:intron | 35.0% | |
| TCAGGATAGCTTATGAAAAC+AGG | - | chr8_1:18032317-18032336 | Msa1182870:intron | 35.0% | |
| !! | ACTCTAGAACATCAGAAACT+AGG | + | chr8_1:18032451-18032470 | None:intergenic | 35.0% |
| !! | TTCTAGAGTAGTATGAAGAC+AGG | - | chr8_1:18032462-18032481 | Msa1182870:intron | 35.0% |
| ! | TCTAGAGTAGTATGAAGACA+GGG | - | chr8_1:18032463-18032482 | Msa1182870:intron | 35.0% |
| !! | GAAGACAGGGTATCTTTTTA+AGG | - | chr8_1:18032476-18032495 | Msa1182870:intron | 35.0% |
| !! | AAGCCTTGTTCCACTAAATT+GGG | - | chr8_1:18032550-18032569 | Msa1182870:intron | 35.0% |
| TAAATTGGGGTCGATTACAT+TGG | - | chr8_1:18032564-18032583 | Msa1182870:intron | 35.0% | |
| CGATTACATTGGTCAAATGA+CGG | - | chr8_1:18032575-18032594 | Msa1182870:intron | 35.0% | |
| TCAAAGGAATAACATGGCAA+AGG | - | chr8_1:18032880-18032899 | Msa1182870:intron | 35.0% | |
| CCAACACAAACAAGTCAATA+TGG | + | chr8_1:18033027-18033046 | None:intergenic | 35.0% | |
| !! | CCATATTGACTTGTTTGTGT+TGG | - | chr8_1:18033024-18033043 | Msa1182870:intron | 35.0% |
| !!! | CGCATTTTAGGACAATAACT+AGG | + | chr8_1:18033113-18033132 | None:intergenic | 35.0% |
| ATTGAAAGGAACATGATCCT+TGG | - | chr8_1:18033141-18033160 | Msa1182870:intron | 35.0% | |
| ! | GTTTCTCTAACAAACTTGCT+CGG | - | chr8_1:18033231-18033250 | Msa1182870:intron | 35.0% |
| ! | TTTCTCTAACAAACTTGCTC+GGG | - | chr8_1:18033232-18033251 | Msa1182870:intron | 35.0% |
| ATGAAGATTTCTCTCCTTAC+AGG | - | chr8_1:18033288-18033307 | Msa1182870:intron | 35.0% | |
| ! | GAGATTTTCATGCCAAAGAA+AGG | - | chr8_1:18033420-18033439 | Msa1182870:intron | 35.0% |
| GGAAAAAAGGAATGAACAAG+TGG | - | chr8_1:18033671-18033690 | Msa1182870:intron | 35.0% | |
| TGAACAAGTGGAAGAAATAG+AGG | - | chr8_1:18033683-18033702 | Msa1182870:intron | 35.0% | |
| GAAATAGAGGAAAATTGGAG+GGG | - | chr8_1:18033696-18033715 | Msa1182870:intron | 35.0% | |
| ! | TACTAAACCCTTCTCTTTTG+AGG | - | chr8_1:18033736-18033755 | Msa1182870:intron | 35.0% |
| ! | ACTAAACCCTTCTCTTTTGA+GGG | - | chr8_1:18033737-18033756 | Msa1182870:intron | 35.0% |
| TTAGTTCCCTCAAAAGAGAA+GGG | + | chr8_1:18033746-18033765 | None:intergenic | 35.0% | |
| ! | TTTAGTTCCCTCAAAAGAGA+AGG | + | chr8_1:18033747-18033766 | None:intergenic | 35.0% |
| CTAAAAAATTGCATTGGAGG+AGG | - | chr8_1:18033762-18033781 | Msa1182870:intron | 35.0% | |
| GTGGAAAATATGAGGGAAAA+TGG | + | chr8_1:18033937-18033956 | None:intergenic | 35.0% | |
| CAAACAAAGCCTAAGTGATA+GGG | - | chr8_1:18033994-18034013 | Msa1182870:intron | 35.0% | |
| AAACAAAGCCTAAGTGATAG+GGG | - | chr8_1:18033995-18034014 | Msa1182870:intron | 35.0% | |
| ATGGATATGGTGTCTAATCT+TGG | - | chr8_1:18034021-18034040 | Msa1182870:intron | 35.0% | |
| TTGGTATTTCATGGCATTTC+AGG | - | chr8_1:18034040-18034059 | Msa1182870:intron | 35.0% | |
| ! | ACCTTGTTATATTCCATCTG+GGG | + | chr8_1:18034075-18034094 | None:intergenic | 35.0% |
| GAAGGTTTATCATCTTTGAG+AGG | - | chr8_1:18034221-18034240 | Msa1182870:CDS | 35.0% | |
| ! | TTATCATCTTTGAGAGGTGA+TGG | - | chr8_1:18034227-18034246 | Msa1182870:CDS | 35.0% |
| ACCTCTTCCGCTTAAAAAAG+CGG | - | chr8_1:18031719-18031738 | Msa1182870:intron | 40.0% | |
| !!! | CTTTCCTCCGCTTTTTTAAG+CGG | + | chr8_1:18031729-18031748 | None:intergenic | 40.0% |
| TTGTTAGGGATATTCTCACG+AGG | + | chr8_1:18031828-18031847 | None:intergenic | 40.0% | |
| GTATGTTGTGTGTTAGACAC+TGG | - | chr8_1:18032128-18032147 | Msa1182870:intron | 40.0% | |
| CAATTTAGTGGAACAAGGCT+TGG | + | chr8_1:18032551-18032570 | None:intergenic | 40.0% | |
| !! | CAAGCCTTGTTCCACTAAAT+TGG | - | chr8_1:18032549-18032568 | Msa1182870:intron | 40.0% |
| !! | AGCCTTGTTCCACTAAATTG+GGG | - | chr8_1:18032551-18032570 | Msa1182870:intron | 40.0% |
| TGTAATCGACCCCAATTTAG+TGG | + | chr8_1:18032563-18032582 | None:intergenic | 40.0% | |
| ! | AACATGATCCTTGGTGCAAA+AGG | - | chr8_1:18033150-18033169 | Msa1182870:intron | 40.0% |
| ! | TCCTTGGTGCAAAAGGTATA+TGG | - | chr8_1:18033157-18033176 | Msa1182870:intron | 40.0% |
| ! | TCCATATACCTTTTGCACCA+AGG | + | chr8_1:18033161-18033180 | None:intergenic | 40.0% |
| TGTGACTCAGTTCCTTTCTT+TGG | + | chr8_1:18033435-18033454 | None:intergenic | 40.0% | |
| TTATCATCTCTGTACTCCCT+TGG | - | chr8_1:18033487-18033506 | Msa1182870:intron | 40.0% | |
| AACAGAAAATCCAGCACCAA+GGG | + | chr8_1:18033506-18033525 | None:intergenic | 40.0% | |
| !!! | CAGCATTGCATTGTTTTTGC+TGG | - | chr8_1:18033567-18033586 | Msa1182870:intron | 40.0% |
| !! | TAAGGCTTTGTTTGCGAGTT+TGG | - | chr8_1:18033625-18033644 | Msa1182870:intron | 40.0% |
| TTGAGGGGTGGAAAATATGA+GGG | + | chr8_1:18033944-18033963 | None:intergenic | 40.0% | |
| TTTGAGGGGTGGAAAATATG+AGG | + | chr8_1:18033945-18033964 | None:intergenic | 40.0% | |
| ! | CTTTGTTTGCGAGTTTCGAT+AGG | + | chr8_1:18033983-18034002 | None:intergenic | 40.0% |
| GCAAACAAAGCCTAAGTGAT+AGG | - | chr8_1:18033993-18034012 | Msa1182870:intron | 40.0% | |
| AACAAAGCCTAAGTGATAGG+GGG | - | chr8_1:18033996-18034015 | Msa1182870:intron | 40.0% | |
| ACCCCAGATGGAATATAACA+AGG | - | chr8_1:18034071-18034090 | Msa1182870:CDS | 40.0% | |
| !! | ATCTTTGAGAGGTGATGGAT+GGG | - | chr8_1:18034232-18034251 | Msa1182870:CDS | 40.0% |
| ! | TCAGACAGAAAGTACAACAC+AGG | + | chr8_1:18034385-18034404 | None:intergenic | 40.0% |
| TGGTGAGAGATAGCATGGAT+TGG | + | chr8_1:18031599-18031618 | None:intergenic | 45.0% | |
| !!! | TCCGCTTTTTTAAGCGGAAG+AGG | + | chr8_1:18031723-18031742 | None:intergenic | 45.0% |
| TCTTCCGCTTAAAAAAGCGG+AGG | - | chr8_1:18031722-18031741 | Msa1182870:intron | 45.0% | |
| AAGCGGAGGAAAGATCAGAA+TGG | - | chr8_1:18031736-18031755 | Msa1182870:intron | 45.0% | |
| !! | TCAGAATGGTGGATAGTCGA+CGG | - | chr8_1:18031750-18031769 | Msa1182870:intron | 45.0% |
| GACGGTGAAATGCACGAAAT+CGG | - | chr8_1:18031768-18031787 | Msa1182870:intron | 45.0% | |
| TAGAACTCGCCTCGTTCTTA+AGG | - | chr8_1:18031881-18031900 | Msa1182870:intron | 45.0% | |
| TTGTGTGTTAGACACTGGAC+AGG | - | chr8_1:18032133-18032152 | Msa1182870:intron | 45.0% | |
| !! | AGGCGTCGATTAGAAGTGTT+GGG | - | chr8_1:18032153-18032172 | Msa1182870:intron | 45.0% |
| GACCCCAATTTAGTGGAACA+AGG | + | chr8_1:18032556-18032575 | None:intergenic | 45.0% | |
| GAGAGACTTTATTGGGACGA+GGG | - | chr8_1:18033209-18033228 | Msa1182870:intron | 45.0% | |
| GCAGGAAAGGAGAAAAACGA+CGG | + | chr8_1:18033321-18033340 | None:intergenic | 45.0% | |
| GAACAGAAAATCCAGCACCA+AGG | + | chr8_1:18033507-18033526 | None:intergenic | 45.0% | |
| !! | GCTTTGTTTGCGAGTTTGGA+GGG | - | chr8_1:18033629-18033648 | Msa1182870:intron | 45.0% |
| ! | CTTTGTTTGCGAGTTTGGAG+GGG | - | chr8_1:18033630-18033649 | Msa1182870:intron | 45.0% |
| ATAGAGGAAAATTGGAGGGG+AGG | - | chr8_1:18033699-18033718 | Msa1182870:intron | 45.0% | |
| TAGAGGAAAATTGGAGGGGA+GGG | - | chr8_1:18033700-18033719 | Msa1182870:intron | 45.0% | |
| ! | ATTGCATTGGAGGAGGGTTT+TGG | - | chr8_1:18033769-18033788 | Msa1182870:intron | 45.0% |
| ! | TTGCATTGGAGGAGGGTTTT+GGG | - | chr8_1:18033770-18033789 | Msa1182870:intron | 45.0% |
| TTTGCGAGTTTCGATAGGAG+GGG | + | chr8_1:18033978-18033997 | None:intergenic | 45.0% | |
| GTTTGCGAGTTTCGATAGGA+GGG | + | chr8_1:18033979-18033998 | None:intergenic | 45.0% | |
| TGTTTGCGAGTTTCGATAGG+AGG | + | chr8_1:18033980-18033999 | None:intergenic | 45.0% | |
| !! | CATCTTTGAGAGGTGATGGA+TGG | - | chr8_1:18034231-18034250 | Msa1182870:CDS | 45.0% |
| !!! | TGATTTATATTTATATATTT+TGG | + | chr8_1:18032046-18032065 | None:intergenic | 5.0% |
| !!! | TATTTTTAATTAATTTAAGA+AGG | - | chr8_1:18034203-18034222 | Msa1182870:CDS | 5.0% |
| ! | GCGTTTGGTGAGAGATAGCA+TGG | + | chr8_1:18031604-18031623 | None:intergenic | 50.0% |
| AAAGAAAGGGGGTGAGAGAG+GGG | + | chr8_1:18031629-18031648 | None:intergenic | 50.0% | |
| GAAAGAAAGGGGGTGAGAGA+GGG | + | chr8_1:18031630-18031649 | None:intergenic | 50.0% | |
| AGAAAGAAAGGGGGTGAGAG+AGG | + | chr8_1:18031631-18031650 | None:intergenic | 50.0% | |
| ! | TGGGAGGTGCGAGAAAGAAA+GGG | + | chr8_1:18031642-18031661 | None:intergenic | 50.0% |
| ! | ATGGGAGGTGCGAGAAAGAA+AGG | + | chr8_1:18031643-18031662 | None:intergenic | 50.0% |
| ! | TTGAGGAGAGCGGAGTTGAT+GGG | + | chr8_1:18031661-18031680 | None:intergenic | 50.0% |
| ! | AGCGGAAGAGGTGTAGACTT+GGG | + | chr8_1:18031711-18031730 | None:intergenic | 50.0% |
| ! | AAGCGGAAGAGGTGTAGACT+TGG | + | chr8_1:18031712-18031731 | None:intergenic | 50.0% |
| CGGAGGAAAGATCAGAATGG+TGG | - | chr8_1:18031739-18031758 | Msa1182870:intron | 50.0% | |
| !! | CAGGCGTCGATTAGAAGTGT+TGG | - | chr8_1:18032152-18032171 | Msa1182870:intron | 50.0% |
| !! | GGCGTCGATTAGAAGTGTTG+GGG | - | chr8_1:18032154-18032173 | Msa1182870:intron | 50.0% |
| GGAGAGACTTTATTGGGACG+AGG | - | chr8_1:18033208-18033227 | Msa1182870:intron | 50.0% | |
| GGAAAGGAGAAAAACGACGG+AGG | + | chr8_1:18033318-18033337 | None:intergenic | 50.0% | |
| !! | GGCTTTGTTTGCGAGTTTGG+AGG | - | chr8_1:18033628-18033647 | Msa1182870:intron | 50.0% |
| TTTGCGAGTTTGGAGGGGAA+GGG | - | chr8_1:18033635-18033654 | Msa1182870:intron | 50.0% | |
| AGGGGAAGGCTTGGGAAAAA+AGG | - | chr8_1:18033658-18033677 | Msa1182870:intron | 50.0% | |
| ! | TGCATTGGAGGAGGGTTTTG+GGG | - | chr8_1:18033771-18033790 | Msa1182870:intron | 50.0% |
| GAGTTTCGATAGGAGGGGAA+GGG | + | chr8_1:18033973-18033992 | None:intergenic | 50.0% | |
| TCCATGACCCCCTATCACTT+AGG | + | chr8_1:18034006-18034025 | None:intergenic | 50.0% | |
| GTGATAGGGGGTCATGGATA+TGG | - | chr8_1:18034008-18034027 | Msa1182870:intron | 50.0% | |
| CAGGAATAGAAGACCCCAGA+TGG | - | chr8_1:18034059-18034078 | Msa1182870:CDS | 50.0% | |
| !! | TGAGAGGTGATGGATGGGAA+AGG | - | chr8_1:18034237-18034256 | Msa1182870:CDS | 50.0% |
| ! | GGAGGTGCGAGAAAGAAAGG+GGG | + | chr8_1:18031640-18031659 | None:intergenic | 55.0% |
| ! | GGGAGGTGCGAGAAAGAAAG+GGG | + | chr8_1:18031641-18031660 | None:intergenic | 55.0% |
| GTTGAGGAGAGCGGAGTTGA+TGG | + | chr8_1:18031662-18031681 | None:intergenic | 55.0% | |
| ! | GAAGAGGTGTAGACTTGGGG+CGG | + | chr8_1:18031707-18031726 | None:intergenic | 55.0% |
| ! | GCGGAAGAGGTGTAGACTTG+GGG | + | chr8_1:18031710-18031729 | None:intergenic | 55.0% |
| ATCACGAACCGTTCACGTGG+CGG | + | chr8_1:18031804-18031823 | None:intergenic | 55.0% | |
| GGAATCACGAACCGTTCACG+TGG | + | chr8_1:18031807-18031826 | None:intergenic | 55.0% | |
| ACGACGGAGGCAAACCTGTA+AGG | + | chr8_1:18033305-18033324 | None:intergenic | 55.0% | |
| ! | TCTCTGTACTCCCTTGGTGC+TGG | - | chr8_1:18033493-18033512 | Msa1182870:intron | 55.0% |
| GTTTGCGAGTTTGGAGGGGA+AGG | - | chr8_1:18033634-18033653 | Msa1182870:intron | 55.0% | |
| !! | GCATTGGAGGAGGGTTTTGG+GGG | - | chr8_1:18033772-18033791 | Msa1182870:intron | 55.0% |
| !!! | CATTGGAGGAGGGTTTTGGG+GGG | - | chr8_1:18033773-18033792 | Msa1182870:intron | 55.0% |
| !!! | ATTGGAGGAGGGTTTTGGGG+GGG | - | chr8_1:18033774-18033793 | Msa1182870:intron | 55.0% |
| !!! | GGTTTTGGGGGGGTTTTGGA+GGG | - | chr8_1:18033784-18033803 | Msa1182870:intron | 55.0% |
| ! | AGGGGAAGGGAAGGCTTTGA+GGG | + | chr8_1:18033960-18033979 | None:intergenic | 55.0% |
| TTCGATAGGAGGGGAAGGGA+AGG | + | chr8_1:18033969-18033988 | None:intergenic | 55.0% | |
| CGAGTTTCGATAGGAGGGGA+AGG | + | chr8_1:18033974-18033993 | None:intergenic | 55.0% | |
| GCCTAAGTGATAGGGGGTCA+TGG | - | chr8_1:18034002-18034021 | Msa1182870:intron | 55.0% | |
| !! | AGGAGAGCGGAGTTGATGGG+AGG | + | chr8_1:18031658-18031677 | None:intergenic | 60.0% |
| ATCACGTGCCGCCACGTGAA+CGG | - | chr8_1:18031793-18031812 | Msa1182870:intron | 60.0% | |
| CGAGTTTGGAGGGGAAGGGA+GGG | - | chr8_1:18033639-18033658 | Msa1182870:intron | 60.0% | |
| GAGTTTGGAGGGGAAGGGAG+GGG | - | chr8_1:18033640-18033659 | Msa1182870:intron | 60.0% | |
| !!! | GGAGGGTTTTGGGGGGGTTT+TGG | - | chr8_1:18033780-18033799 | Msa1182870:intron | 60.0% |
| !!! | GGGTTTTGGGGGGGTTTTGG+AGG | - | chr8_1:18033783-18033802 | Msa1182870:intron | 60.0% |
| !! | GAAGGGAAGGCTTTGAGGGG+TGG | + | chr8_1:18033956-18033975 | None:intergenic | 60.0% |
| !! | GGGGAAGGGAAGGCTTTGAG+GGG | + | chr8_1:18033959-18033978 | None:intergenic | 60.0% |
| GAGGGGAAGGGAAGGCTTTG+AGG | + | chr8_1:18033961-18033980 | None:intergenic | 60.0% | |
| !! | GGTGAGAGAGGGGAGGCGTT+TGG | + | chr8_1:18031619-18031638 | None:intergenic | 65.0% |
| GAAAGGGGGTGAGAGAGGGG+AGG | + | chr8_1:18031626-18031645 | None:intergenic | 65.0% | |
| TGTAGACTTGGGGCGGCGTC+TGG | + | chr8_1:18031700-18031719 | None:intergenic | 65.0% | |
| GCGAGTTTGGAGGGGAAGGG+AGG | - | chr8_1:18033638-18033657 | Msa1182870:intron | 65.0% | |
| TTGGAGGGGAAGGGAGGGGA+AGG | - | chr8_1:18033644-18033663 | Msa1182870:intron | 65.0% | |
| GGGAAGGGAGGGGAAGGCTT+GGG | - | chr8_1:18033650-18033669 | Msa1182870:intron | 65.0% | |
| ! | TTGGGGCGGCGTCTGGAGTG+GGG | + | chr8_1:18031693-18031712 | None:intergenic | 70.0% |
| ! | CTTGGGGCGGCGTCTGGAGT+GGG | + | chr8_1:18031694-18031713 | None:intergenic | 70.0% |
| ACTTGGGGCGGCGTCTGGAG+TGG | + | chr8_1:18031695-18031714 | None:intergenic | 70.0% | |
| GGGGAAGGGAGGGGAAGGCT+TGG | - | chr8_1:18033649-18033668 | Msa1182870:intron | 70.0% | |
| !! | GGGCGGCGGGTTGAGGAGAG+CGG | + | chr8_1:18031671-18031690 | None:intergenic | 75.0% |
| ! | TGGGGCGGCGTCTGGAGTGG+GGG | + | chr8_1:18031692-18031711 | None:intergenic | 75.0% |
| !!! | GAGTGGGGGGCGGCGGGTTG+AGG | + | chr8_1:18031678-18031697 | None:intergenic | 80.0% |
| !! | CGTCTGGAGTGGGGGGCGGC+GGG | + | chr8_1:18031684-18031703 | None:intergenic | 80.0% |
| !! | GCGTCTGGAGTGGGGGGCGG+CGG | + | chr8_1:18031685-18031704 | None:intergenic | 80.0% |
| !! | GCGGCGTCTGGAGTGGGGGG+CGG | + | chr8_1:18031688-18031707 | None:intergenic | 80.0% |
| !! | GGGGCGGCGTCTGGAGTGGG+GGG | + | chr8_1:18031691-18031710 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 18031449 | 18034501 | 18031449 | ID=Msa1182870;Name=Msa1182870 |
| chr8_1 | mRNA | 18031449 | 18034501 | 18031449 | ID=Msa1182870-mRNA-1;Parent=Msa1182870;Name=Msa1182870-mRNA-1;_AED=0.03;_eAED=0.03;_QI=154|1|0.75|1|1|1|4|0|192 |
| chr8_1 | exon | 18031449 | 18031526 | 18031449 | ID=Msa1182870-mRNA-1:exon:6885;Parent=Msa1182870-mRNA-1 |
| chr8_1 | exon | 18031858 | 18031888 | 18031858 | ID=Msa1182870-mRNA-1:exon:6884;Parent=Msa1182870-mRNA-1 |
| chr8_1 | exon | 18032641 | 18032801 | 18032641 | ID=Msa1182870-mRNA-1:exon:6883;Parent=Msa1182870-mRNA-1 |
| chr8_1 | exon | 18034042 | 18034501 | 18034042 | ID=Msa1182870-mRNA-1:exon:6882;Parent=Msa1182870-mRNA-1 |
| chr8_1 | five_prime_UTR | 18034348 | 18034501 | 18034348 | ID=Msa1182870-mRNA-1:five_prime_utr;Parent=Msa1182870-mRNA-1 |
| chr8_1 | CDS | 18034042 | 18034347 | 18034042 | ID=Msa1182870-mRNA-1:cds;Parent=Msa1182870-mRNA-1 |
| chr8_1 | CDS | 18032641 | 18032801 | 18032641 | ID=Msa1182870-mRNA-1:cds;Parent=Msa1182870-mRNA-1 |
| chr8_1 | CDS | 18031858 | 18031888 | 18031858 | ID=Msa1182870-mRNA-1:cds;Parent=Msa1182870-mRNA-1 |
| chr8_1 | CDS | 18031449 | 18031526 | 18031449 | ID=Msa1182870-mRNA-1:cds;Parent=Msa1182870-mRNA-1 |
| Gene Sequence |
| Protein sequence |
