Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1313580 | XP_003627097.1 | 98.611 | 576 | 8 | 0 | 1 | 576 | 1 | 576 | 0.0 | 1144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1313580 | sp|Q93ZM7|CH60C_ARATH | 82.070 | 541 | 95 | 2 | 31 | 571 | 29 | 567 | 0.0 | 910 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1313580 | G7LHF7 | 98.611 | 576 | 8 | 0 | 1 | 576 | 1 | 576 | 0.0 | 1144 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1233030 | Msa1313580 | 0.852297 | 5.063515e-61 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1313580 | MtrunA17_Chr8g0342341 | 98.611 | 576 | 8 | 0 | 1 | 576 | 1 | 576 | 0.0 | 1144 |
| Msa1313580 | MtrunA17_Chr1g0196761 | 70.486 | 576 | 168 | 2 | 1 | 576 | 1 | 574 | 0.0 | 809 |
| Msa1313580 | MtrunA17_Chr1g0196751 | 69.982 | 563 | 167 | 2 | 1 | 563 | 1 | 561 | 0.0 | 786 |
| Msa1313580 | MtrunA17_Chr1g0152141 | 43.363 | 565 | 301 | 7 | 16 | 575 | 35 | 585 | 1.89e-149 | 442 |
| Msa1313580 | MtrunA17_Chr1g0152151 | 44.173 | 532 | 285 | 4 | 48 | 575 | 62 | 585 | 2.11e-148 | 440 |
| Msa1313580 | MtrunA17_Chr4g0028601 | 42.938 | 531 | 295 | 4 | 36 | 564 | 50 | 574 | 1.31e-141 | 422 |
| Msa1313580 | MtrunA17_Chr4g0043731 | 38.433 | 536 | 323 | 4 | 36 | 569 | 42 | 572 | 1.19e-122 | 373 |
| Msa1313580 | MtrunA17_Chr5g0421251 | 39.759 | 498 | 291 | 4 | 11 | 502 | 13 | 507 | 5.23e-120 | 364 |
| Msa1313580 | MtrunA17_Chr7g0272821 | 23.889 | 540 | 332 | 17 | 41 | 547 | 16 | 509 | 5.92e-13 | 71.6 |
| Msa1313580 | MtrunA17_Chr7g0241881 | 23.529 | 544 | 329 | 17 | 41 | 547 | 16 | 509 | 1.08e-12 | 70.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1313580 | AT3G13860.1 | 82.070 | 541 | 95 | 2 | 31 | 571 | 29 | 567 | 0.0 | 910 |
| Msa1313580 | AT3G23990.1 | 70.870 | 563 | 162 | 1 | 1 | 563 | 1 | 561 | 0.0 | 795 |
| Msa1313580 | AT2G33210.1 | 69.355 | 558 | 166 | 2 | 1 | 556 | 1 | 555 | 0.0 | 765 |
| Msa1313580 | AT2G33210.2 | 68.817 | 558 | 164 | 3 | 1 | 556 | 1 | 550 | 0.0 | 751 |
| Msa1313580 | AT3G13470.1 | 44.612 | 529 | 281 | 5 | 51 | 575 | 70 | 590 | 1.97e-145 | 433 |
| Msa1313580 | AT1G55490.5 | 43.315 | 531 | 290 | 4 | 51 | 576 | 74 | 598 | 3.51e-145 | 432 |
| Msa1313580 | AT1G55490.1 | 43.315 | 531 | 290 | 4 | 51 | 576 | 74 | 598 | 3.51e-145 | 432 |
| Msa1313580 | AT1G55490.3 | 43.315 | 531 | 290 | 4 | 51 | 576 | 74 | 598 | 3.51e-145 | 432 |
| Msa1313580 | AT1G55490.4 | 43.315 | 531 | 290 | 4 | 51 | 576 | 74 | 598 | 3.51e-145 | 432 |
| Msa1313580 | AT1G55490.2 | 43.315 | 531 | 290 | 4 | 51 | 576 | 74 | 598 | 3.51e-145 | 432 |
| Msa1313580 | AT5G56500.2 | 42.274 | 563 | 319 | 6 | 18 | 576 | 35 | 595 | 3.60e-145 | 432 |
| Msa1313580 | AT5G56500.1 | 42.274 | 563 | 319 | 6 | 18 | 576 | 35 | 595 | 3.60e-145 | 432 |
| Msa1313580 | AT2G28000.1 | 42.007 | 538 | 305 | 4 | 24 | 556 | 34 | 569 | 1.04e-139 | 418 |
| Msa1313580 | AT1G26230.1 | 40.111 | 541 | 319 | 5 | 28 | 564 | 33 | 572 | 1.77e-133 | 402 |
| Msa1313580 | AT1G26230.4 | 40.698 | 516 | 303 | 3 | 51 | 564 | 6 | 520 | 3.61e-133 | 400 |
| Msa1313580 | AT1G26230.3 | 40.820 | 512 | 300 | 3 | 55 | 564 | 2 | 512 | 7.21e-133 | 399 |
| Msa1313580 | AT1G26230.2 | 39.958 | 478 | 282 | 5 | 28 | 501 | 33 | 509 | 7.77e-117 | 358 |
| Msa1313580 | AT5G18820.1 | 36.431 | 538 | 335 | 4 | 36 | 569 | 36 | 570 | 2.52e-113 | 349 |
| Msa1313580 | AT1G26230.5 | 39.416 | 411 | 246 | 3 | 28 | 436 | 33 | 442 | 1.21e-102 | 318 |
| Msa1313580 | AT5G18820.2 | 35.699 | 465 | 293 | 3 | 109 | 569 | 2 | 464 | 2.69e-93 | 294 |
| Msa1313580 | AT5G18820.3 | 34.656 | 378 | 246 | 1 | 36 | 413 | 36 | 412 | 7.67e-75 | 245 |
Find 158 sgRNAs with CRISPR-Local
Find 418 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTCTTTGAATTTGATACTTT+TGG | 0.164986 | 8_4:-11621885 | None:intergenic |
| GTTTGAAATTTACAATTATA+TGG | 0.178142 | 8_4:+11620549 | Msa1313580:five_prime_UTR |
| TTTGCTGTGCCAAGCATTTC+GGG | 0.206775 | 8_4:-11625113 | None:intergenic |
| GCTATAAAAGCTCCTGGTTT+TGG | 0.212262 | 8_4:+11624909 | Msa1313580:CDS |
| TGCACCTGGGTTATTTCTTC+TGG | 0.223943 | 8_4:-11622517 | None:intergenic |
| GATGATCTTGCGATTCTTAC+TGG | 0.243237 | 8_4:+11624954 | Msa1313580:CDS |
| GCTGTTCTAACAACTTTAAC+AGG | 0.285162 | 8_4:-11626663 | None:intergenic |
| CAAATTCCTATTTCATGGTT+TGG | 0.285767 | 8_4:+11627288 | Msa1313580:three_prime_UTR |
| ATACATCCAAACCATGAAAT+AGG | 0.296604 | 8_4:-11627294 | None:intergenic |
| ATCCATATCTGGCACCCTTT+GGG | 0.321185 | 8_4:-11626863 | None:intergenic |
| AATTGAAGAAGAAGCAAATA+GGG | 0.322317 | 8_4:-11620666 | None:intergenic |
| GCAAATGGGGAGCGTGATAT+TGG | 0.324943 | 8_4:+11622809 | Msa1313580:CDS |
| TAAAGCAAATTCCTATTTCA+TGG | 0.331639 | 8_4:+11627283 | Msa1313580:three_prime_UTR |
| GAATTGAAGAAGAAGCAAAT+AGG | 0.335540 | 8_4:-11620667 | None:intergenic |
| TTGTGTTACAGAAGAAATTA+TGG | 0.335988 | 8_4:-11627125 | None:intergenic |
| TTCTGATCAGTAATAAAATA+AGG | 0.341376 | 8_4:-11623041 | None:intergenic |
| CCAACAATTTGCTGTGAACT+AGG | 0.341402 | 8_4:-11626400 | None:intergenic |
| GGTGCCAGATATGGATGATT+TGG | 0.346566 | 8_4:+11626870 | Msa1313580:CDS |
| AACAGGAACCTATGTTGATA+TGG | 0.352995 | 8_4:+11626620 | Msa1313580:intron |
| TTGTGACCCTAGGGTTCCTT+TGG | 0.365867 | 8_4:-11621844 | None:intergenic |
| CATCCATATCTGGCACCCTT+TGG | 0.368091 | 8_4:-11626864 | None:intergenic |
| CAAGCATCATGCCGGGCTTA+AGG | 0.371358 | 8_4:+11623800 | Msa1313580:CDS |
| TCCCCAAAGGGTGCCAGATA+TGG | 0.373756 | 8_4:+11626861 | Msa1313580:CDS |
| AACGGTAAATTGTGAAGGTT+GGG | 0.377622 | 8_4:-11620713 | None:intergenic |
| AAGTTGGGGAAAGGAAAGAT+AGG | 0.377892 | 8_4:+11625753 | Msa1313580:CDS |
| AAGATATCAACTTTGGAGTT+GGG | 0.378560 | 8_4:+11621030 | Msa1313580:CDS |
| TTGTCATGGATGAGGATAAA+GGG | 0.383754 | 8_4:-11623568 | None:intergenic |
| TTTGAAATTTACAATTATAT+GGG | 0.393952 | 8_4:+11620550 | Msa1313580:five_prime_UTR |
| TAGTCCAAATCATCCATATC+TGG | 0.396497 | 8_4:-11626874 | None:intergenic |
| GTGGAGGAGGGTATTGTTCC+AGG | 0.402426 | 8_4:+11625809 | Msa1313580:CDS |
| ACAGCTCCAATACTTTCAAC+AGG | 0.404751 | 8_4:-11623612 | None:intergenic |
| GTTGGTACTATATCTGCAAA+TGG | 0.407082 | 8_4:+11622794 | Msa1313580:CDS |
| ATATGGGCCAACCATCAAAA+AGG | 0.407673 | 8_4:+11620566 | Msa1313580:five_prime_UTR |
| CCTAGTTCACAGCAAATTGT+TGG | 0.426957 | 8_4:+11626400 | Msa1313580:CDS |
| CTTGTCATGGATGAGGATAA+AGG | 0.431846 | 8_4:-11623569 | None:intergenic |
| CTTTCATCGTTTGTTGAAGC+AGG | 0.431858 | 8_4:-11626901 | None:intergenic |
| GCTCGTGCTGCTATGCTTCA+AGG | 0.432226 | 8_4:+11621053 | Msa1313580:CDS |
| AATGAGTTGGAAGTAGTAGA+AGG | 0.432686 | 8_4:+11622990 | Msa1313580:CDS |
| AAAGATATCAACTTTGGAGT+TGG | 0.437750 | 8_4:+11621029 | Msa1313580:CDS |
| GTGACTAAAGATATCAACTT+TGG | 0.438297 | 8_4:+11621023 | Msa1313580:CDS |
| TTGGTACTATATCTGCAAAT+GGG | 0.441996 | 8_4:+11622795 | Msa1313580:CDS |
| TTCAAGTTATCATAATCAAT+AGG | 0.443023 | 8_4:+11627054 | Msa1313580:three_prime_UTR |
| ACTCAGGCAATACTCATAGA+AGG | 0.449520 | 8_4:+11622382 | Msa1313580:CDS |
| ATATAATTGTAAATTTCAAA+CGG | 0.449673 | 8_4:-11620547 | None:intergenic |
| TAAAGTTGTTAGAACAGCTT+TGG | 0.451306 | 8_4:+11626668 | Msa1313580:CDS |
| ATGGAGAAAGTTGGGAAGGA+AGG | 0.451870 | 8_4:+11622851 | Msa1313580:CDS |
| AGCCTACGATTCAATGTCAT+AGG | 0.456235 | 8_4:+11627015 | Msa1313580:three_prime_UTR |
| TATAATTGTAAATTTCAAAC+GGG | 0.457802 | 8_4:-11620546 | None:intergenic |
| GGGTTCCCTGTTGAAAGTAT+TGG | 0.460700 | 8_4:+11623606 | Msa1313580:CDS |
| GCATACCTCTCGACAAAGTC+CGG | 0.461524 | 8_4:+11625090 | Msa1313580:CDS |
| AAGCTGCTAAAGTTTAAACT+TGG | 0.470129 | 8_4:+11626957 | Msa1313580:three_prime_UTR |
| TATACAATAGCTTCAAATGC+TGG | 0.470880 | 8_4:+11626365 | Msa1313580:CDS |
| CTCCTCCACAGCTGCTCTAG+TGG | 0.472284 | 8_4:-11625795 | None:intergenic |
| CACTAGAGCAGCTGTGGAGG+AGG | 0.478283 | 8_4:+11625796 | Msa1313580:CDS |
| TCTTTGAAGTGGAAGAAGCT+AGG | 0.480202 | 8_4:-11620780 | None:intergenic |
| CTTATATGCTAGCAAAGTCT+TGG | 0.482023 | 8_4:+11626155 | Msa1313580:CDS |
| CAAGGGCAATGGAGAAAGTT+GGG | 0.484207 | 8_4:+11622843 | Msa1313580:CDS |
| GCAAGGGCAATGGAGAAAGT+TGG | 0.486466 | 8_4:+11622842 | Msa1313580:CDS |
| GTGCTAGTGAGGCAGAAGTT+GGG | 0.487173 | 8_4:+11625738 | Msa1313580:CDS |
| GGTGCTAGTGAGGCAGAAGT+TGG | 0.493731 | 8_4:+11625737 | Msa1313580:CDS |
| CAACGGTAAATTGTGAAGGT+TGG | 0.499942 | 8_4:-11620714 | None:intergenic |
| AAAGTCCGGCCCGAAATGCT+TGG | 0.503924 | 8_4:+11625104 | Msa1313580:CDS |
| AGCTGCTAAAGTTTAAACTT+GGG | 0.504128 | 8_4:+11626958 | Msa1313580:three_prime_UTR |
| GTTTGTGCTATAAAAGCTCC+TGG | 0.509754 | 8_4:+11624903 | Msa1313580:CDS |
| ATAATGGGGCATTGTTAAGA+AGG | 0.512237 | 8_4:+11620994 | Msa1313580:CDS |
| AATGTCATGGATTTGCGTAA+TGG | 0.514188 | 8_4:+11622430 | Msa1313580:CDS |
| TATCGAAGAGAGATGTGTCC+AGG | 0.518182 | 8_4:+11625273 | Msa1313580:CDS |
| CTATTGTTCTACATGGTGGC+GGG | 0.518662 | 8_4:+11625239 | Msa1313580:CDS |
| CTGTGCCAAGCATTTCGGGC+CGG | 0.519343 | 8_4:-11625109 | None:intergenic |
| TCTCATCAAGCAGGTGGCTA+AGG | 0.519392 | 8_4:+11621931 | Msa1313580:CDS |
| AGAAAAGCCAAAGGAACCCT+AGG | 0.527056 | 8_4:+11621837 | Msa1313580:CDS |
| CTCCTATTGTCCCCAAAACC+AGG | 0.529263 | 8_4:-11624921 | None:intergenic |
| CAACATCTTCCGCAACAACT+AGG | 0.529271 | 8_4:-11623746 | None:intergenic |
| CACCATCCTTTGTGACCCTA+GGG | 0.529717 | 8_4:-11621853 | None:intergenic |
| CTTTGAAGTGGAAGAAGCTA+GGG | 0.529993 | 8_4:-11620779 | None:intergenic |
| ACACCATCCTTTGTGACCCT+AGG | 0.532143 | 8_4:-11621854 | None:intergenic |
| CAGCTTTGGTAGATGCTGCC+AGG | 0.535337 | 8_4:+11626682 | Msa1313580:CDS |
| ATACTCAACAAGCATCATGC+CGG | 0.539543 | 8_4:+11623792 | Msa1313580:CDS |
| TCCATATCTGGCACCCTTTG+GGG | 0.540298 | 8_4:-11626862 | None:intergenic |
| AGATATCAACTTTGGAGTTG+GGG | 0.541204 | 8_4:+11621031 | Msa1313580:CDS |
| TGAAATGAGATAGAATAGAA+TGG | 0.541251 | 8_4:-11627359 | None:intergenic |
| AGGTGTTTCTGAGGTTGCTG+AGG | 0.542168 | 8_4:+11621073 | Msa1313580:CDS |
| AACCCTAGGGTCACAAAGGA+TGG | 0.542541 | 8_4:+11621851 | Msa1313580:CDS |
| AGTTGGGGAAAGGAAAGATA+GGG | 0.546516 | 8_4:+11625754 | Msa1313580:CDS |
| TTTGAAGCTATTGTATATGT+TGG | 0.547605 | 8_4:-11626359 | None:intergenic |
| TATGTTGATATGGTGAAGGC+TGG | 0.547684 | 8_4:+11626630 | Msa1313580:CDS |
| GAGTATTGCCTGAGTCAAAA+CGG | 0.549575 | 8_4:-11622374 | None:intergenic |
| TACTCAACAAGCATCATGCC+GGG | 0.550666 | 8_4:+11623793 | Msa1313580:CDS |
| CAACAATTTGCTGTGAACTA+GGG | 0.551192 | 8_4:-11626399 | None:intergenic |
| ATATCTGGCACCCTTTGGGG+AGG | 0.553447 | 8_4:-11626859 | None:intergenic |
| ATTCTCCACAATAGATGCCT+CGG | 0.555291 | 8_4:-11626818 | None:intergenic |
| GATTATTCAGAATGCACTCA+AGG | 0.557505 | 8_4:+11626221 | Msa1313580:CDS |
| GAACACTATGGATAATGAGT+TGG | 0.558978 | 8_4:+11622977 | Msa1313580:CDS |
| CAAGAATAAACCTCCCCAAA+GGG | 0.559230 | 8_4:+11626849 | Msa1313580:CDS |
| TGGTGCTGATCTCATCAAGC+AGG | 0.560637 | 8_4:+11621922 | Msa1313580:CDS |
| TCCCTATGACATTGAATCGT+AGG | 0.565565 | 8_4:-11627017 | None:intergenic |
| TGCTAGTGAGGCAGAAGTTG+GGG | 0.566055 | 8_4:+11625739 | Msa1313580:CDS |
| AAGGCTACCAACAGTACTGC+AGG | 0.569230 | 8_4:+11621950 | Msa1313580:CDS |
| TATGCTTCAAGGTGTTTCTG+AGG | 0.569578 | 8_4:+11621064 | Msa1313580:CDS |
| GACAACCGAGGCATCTATTG+TGG | 0.569813 | 8_4:+11626813 | Msa1313580:CDS |
| CAGAAGAAATTATGGTACAA+AGG | 0.575112 | 8_4:-11627117 | None:intergenic |
| ACTATTGTTCTACATGGTGG+CGG | 0.578772 | 8_4:+11625238 | Msa1313580:CDS |
| AGACAATACCTTGGGTCCCA+TGG | 0.579999 | 8_4:-11621108 | None:intergenic |
| ACCGTCTCCTGCAGTACTGT+TGG | 0.580461 | 8_4:-11621957 | None:intergenic |
| CTGCTAAAGTTTAAACTTGG+GGG | 0.580607 | 8_4:+11626960 | Msa1313580:three_prime_UTR |
| TAAACCTGTTACCTTAAGCC+CGG | 0.582121 | 8_4:-11623811 | None:intergenic |
| TGACAAGAAAATTTCAGACA+TGG | 0.583948 | 8_4:+11623585 | Msa1313580:CDS |
| AGCCTTCACCATATCAACAT+AGG | 0.586703 | 8_4:-11626628 | None:intergenic |
| TGCTGCTGGTGTAAATGTCA+TGG | 0.587592 | 8_4:+11622417 | Msa1313580:CDS |
| GACAAGAAAATTTCAGACAT+GGG | 0.587795 | 8_4:+11623586 | Msa1313580:CDS |
| TGCCACTAGAGCAGCTGTGG+AGG | 0.588294 | 8_4:+11625793 | Msa1313580:CDS |
| TGCGATTCTTACTGGAGGAG+AGG | 0.588409 | 8_4:+11624962 | Msa1313580:CDS |
| GCTGCTAAAGTTTAAACTTG+GGG | 0.588647 | 8_4:+11626959 | Msa1313580:three_prime_UTR |
| CAAAGTTACCATGGGACCCA+AGG | 0.590322 | 8_4:+11621100 | Msa1313580:CDS |
| ACAGGTTGGTGGTGCTAGTG+AGG | 0.591068 | 8_4:+11625727 | Msa1313580:intron |
| GCCTACGATTCAATGTCATA+GGG | 0.594245 | 8_4:+11627016 | Msa1313580:three_prime_UTR |
| GGATGCAAATCAGTTGCTGC+TGG | 0.595943 | 8_4:+11622403 | Msa1313580:CDS |
| TGCTAAAGTTTAAACTTGGG+GGG | 0.599616 | 8_4:+11626961 | Msa1313580:three_prime_UTR |
| ACCAACAGTACTGCAGGAGA+CGG | 0.602314 | 8_4:+11621956 | Msa1313580:CDS |
| GCAGCAACGGTAAATTGTGA+AGG | 0.604773 | 8_4:-11620718 | None:intergenic |
| AGATGTTGACAGTGATGCAT+TGG | 0.605442 | 8_4:+11623761 | Msa1313580:CDS |
| GGCAATGGAGAAAGTTGGGA+AGG | 0.606230 | 8_4:+11622847 | Msa1313580:CDS |
| ATACATTGTAGTTGCAGCAA+CGG | 0.606910 | 8_4:-11620731 | None:intergenic |
| AGAATTGATAGCAAGGGCAA+TGG | 0.608252 | 8_4:+11622832 | Msa1313580:CDS |
| AAATGCCACTAGAGCAGCTG+TGG | 0.609502 | 8_4:+11625790 | Msa1313580:CDS |
| TGTCATGGATGAGGATAAAG+GGG | 0.609505 | 8_4:-11623567 | None:intergenic |
| TATTGTTCTACATGGTGGCG+GGG | 0.610283 | 8_4:+11625240 | Msa1313580:CDS |
| ACAAGAATAAACCTCCCCAA+AGG | 0.612403 | 8_4:+11626848 | Msa1313580:CDS |
| AATGGACTAGAGCAGCGTAA+CGG | 0.614299 | 8_4:+11627214 | Msa1313580:three_prime_UTR |
| TCTAAACATCTACAGGTTGG+TGG | 0.618531 | 8_4:+11625716 | Msa1313580:intron |
| ACTAGAGCAGCTGTGGAGGA+GGG | 0.618745 | 8_4:+11625797 | Msa1313580:CDS |
| GAACGGCTGTCAAAACTCTC+CGG | 0.618829 | 8_4:+11625596 | Msa1313580:CDS |
| AAGACCACTCCTAGTTGTTG+CGG | 0.619692 | 8_4:+11623737 | Msa1313580:CDS |
| TATTGGAGAATTGATAGCAA+GGG | 0.622634 | 8_4:+11622826 | Msa1313580:CDS |
| TGAGGCTGTCAAAGTTACCA+TGG | 0.624076 | 8_4:+11621091 | Msa1313580:CDS |
| TGGTACTATATCTGCAAATG+GGG | 0.624150 | 8_4:+11622796 | Msa1313580:CDS |
| AGTATTGGAGCTGTCAGTAA+CGG | 0.624634 | 8_4:+11623621 | Msa1313580:CDS |
| TTTGAAGACAGCAACACCGC+CGG | 0.626659 | 8_4:-11625615 | None:intergenic |
| GAGGCTGTCAAAGTTACCAT+GGG | 0.627770 | 8_4:+11621092 | Msa1313580:CDS |
| GTGAGGCAGAAGTTGGGGAA+AGG | 0.628847 | 8_4:+11625744 | Msa1313580:CDS |
| TGCTGATCTCATCAAGCAGG+TGG | 0.640976 | 8_4:+11621925 | Msa1313580:CDS |
| ATATTGGAGAATTGATAGCA+AGG | 0.642106 | 8_4:+11622825 | Msa1313580:CDS |
| GAAGGAATGAAGTTGTCTAG+AGG | 0.642343 | 8_4:+11623008 | Msa1313580:CDS |
| ACGGTAAATTGTGAAGGTTG+GGG | 0.644110 | 8_4:-11620712 | None:intergenic |
| AAGGAACCCTAGGGTCACAA+AGG | 0.647644 | 8_4:+11621847 | Msa1313580:CDS |
| GTTGCTACTGACGACAACCG+AGG | 0.650081 | 8_4:+11626801 | Msa1313580:CDS |
| GAAAAGCCAAAGGAACCCTA+GGG | 0.650357 | 8_4:+11621838 | Msa1313580:CDS |
| AACCTATGTTGATATGGTGA+AGG | 0.655556 | 8_4:+11626626 | Msa1313580:CDS |
| GATGACACTATTGTTCTACA+TGG | 0.655586 | 8_4:+11625232 | Msa1313580:CDS |
| CAGCTCCAATACTTTCAACA+GGG | 0.661874 | 8_4:-11623611 | None:intergenic |
| TTTGTGGCAGATGTATAATG+GGG | 0.664072 | 8_4:+11620980 | Msa1313580:intron |
| TCTTCCGCAACAACTAGGAG+TGG | 0.668081 | 8_4:-11623741 | None:intergenic |
| TGATAATTGAGAAAAGCCAA+AGG | 0.686879 | 8_4:+11621828 | Msa1313580:CDS |
| GATCTTGCGATTCTTACTGG+AGG | 0.688070 | 8_4:+11624957 | Msa1313580:CDS |
| CGGCTGTCAAAACTCTCCGG+CGG | 0.699468 | 8_4:+11625599 | Msa1313580:CDS |
| CAGGTCATCACAGAAGAACG+CGG | 0.710751 | 8_4:+11625068 | Msa1313580:intron |
| TACACCAGAAGAAATAACCC+AGG | 0.716918 | 8_4:+11622513 | Msa1313580:CDS |
| GACACTATTGTTCTACATGG+TGG | 0.733578 | 8_4:+11625235 | Msa1313580:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATAATTGTAAATTTCAAA+CGG | - | chr8_4:11620550-11620569 | None:intergenic | 10.0% |
| !!! | TTTGAAATTTACAATTATAT+GGG | + | chr8_4:11620550-11620569 | Msa1313580:five_prime_UTR | 10.0% |
| !! | TTTAAGAATAAAAATAAGAT+TGG | - | chr8_4:11620829-11620848 | None:intergenic | 10.0% |
| !! | GTTTATAATTTATATATATG+CGG | + | chr8_4:11622277-11622296 | Msa1313580:intron | 10.0% |
| !!! | ATAAGTTTTATAAACTATTT+CGG | - | chr8_4:11624670-11624689 | None:intergenic | 10.0% |
| !! | AAAACTGATTAATTAAATAT+AGG | - | chr8_4:11624998-11625017 | None:intergenic | 10.0% |
| !!! | TAAATTCTCATTATATTTTT+TGG | + | chr8_4:11627244-11627263 | Msa1313580:three_prime_UTR | 10.0% |
| !!! | AAATTCTCATTATATTTTTT+GGG | + | chr8_4:11627245-11627264 | Msa1313580:three_prime_UTR | 10.0% |
| !! | TATAATTGTAAATTTCAAAC+GGG | - | chr8_4:11620549-11620568 | None:intergenic | 15.0% |
| !!! | GTTTGAAATTTACAATTATA+TGG | + | chr8_4:11620549-11620568 | Msa1313580:five_prime_UTR | 15.0% |
| !!! | AATAAAAATAAGATTGGTTA+TGG | - | chr8_4:11620823-11620842 | None:intergenic | 15.0% |
| !!! | AGTTTGAATTTTTATTGAAT+TGG | + | chr8_4:11620877-11620896 | Msa1313580:intron | 15.0% |
| !!! | AATAAAAATGATGAATTTTG+TGG | + | chr8_4:11620964-11620983 | Msa1313580:intron | 15.0% |
| !! | TAATAATATATTTCAATCTC+AGG | + | chr8_4:11622105-11622124 | Msa1313580:intron | 15.0% |
| !! | AATAATATATTTCAATCTCA+GGG | + | chr8_4:11622106-11622125 | Msa1313580:intron | 15.0% |
| !!! | ATATGTCTAATATTGATTAT+AGG | - | chr8_4:11622624-11622643 | None:intergenic | 15.0% |
| !!! | ATTGATTTTATATGACTAAT+AGG | + | chr8_4:11622772-11622791 | Msa1313580:intron | 15.0% |
| !! | TGACATCATATATAAATAAA+AGG | + | chr8_4:11623479-11623498 | Msa1313580:intron | 15.0% |
| !! | GTTTACATCATATATAATAA+AGG | + | chr8_4:11623515-11623534 | Msa1313580:intron | 15.0% |
| !! | TTTATAAGAGAACATTTATT+TGG | - | chr8_4:11624505-11624524 | None:intergenic | 15.0% |
| !! | ATAAATGTTCTCTTATAAAT+AGG | + | chr8_4:11624506-11624525 | Msa1313580:intron | 15.0% |
| !!! | ATATCATTAGTTATTTCTAA+AGG | - | chr8_4:11624578-11624597 | None:intergenic | 15.0% |
| !!! | GATTTTAATGAAAATATTAC+TGG | + | chr8_4:11625422-11625441 | Msa1313580:intron | 15.0% |
| !! | TTATACTTGTATTAAAAAGA+AGG | + | chr8_4:11626568-11626587 | Msa1313580:intron | 15.0% |
| !!! | TTTTTATTGAATTGGAATTG+TGG | + | chr8_4:11620885-11620904 | Msa1313580:intron | 20.0% |
| !!! | TTTTATTGAATTGGAATTGT+GGG | + | chr8_4:11620886-11620905 | Msa1313580:intron | 20.0% |
| !!! | AATTTTGTTTTTGCTTTGAT+GGG | + | chr8_4:11620928-11620947 | Msa1313580:intron | 20.0% |
| !!! | TATTTTCTTTTGTTTCGAAT+TGG | + | chr8_4:11621786-11621805 | Msa1313580:intron | 20.0% |
| !! | AATTCTCAATAAACACTTAT+AGG | - | chr8_4:11622022-11622041 | None:intergenic | 20.0% |
| !! | TATAAGTGTTTATTGAGAAT+TGG | + | chr8_4:11622021-11622040 | Msa1313580:intron | 20.0% |
| !! | ATAATATATTTCAATCTCAG+GGG | + | chr8_4:11622107-11622126 | Msa1313580:intron | 20.0% |
| !!! | ATATAGTTAATGAGTTTTGA+TGG | - | chr8_4:11622149-11622168 | None:intergenic | 20.0% |
| !!! | TATTCACTGTTAATGAATTT+TGG | + | chr8_4:11622556-11622575 | Msa1313580:intron | 20.0% |
| !!! | TTTTTTTTCCGACAAAAAAT+TGG | + | chr8_4:11622668-11622687 | Msa1313580:intron | 20.0% |
| !!! | ATTTTATATGACTAATAGGT+TGG | + | chr8_4:11622776-11622795 | Msa1313580:intron | 20.0% |
| !! | TATTAACAAAGTTTCAATAC+AGG | + | chr8_4:11622924-11622943 | Msa1313580:intron | 20.0% |
| !!! | TCTAAGATTTTAATGTTTTC+AGG | + | chr8_4:11622950-11622969 | Msa1313580:intron | 20.0% |
| !! | TTCTGATCAGTAATAAAATA+AGG | - | chr8_4:11623044-11623063 | None:intergenic | 20.0% |
| !! | TTATAAGAAGAAAAACAACA+GGG | - | chr8_4:11623288-11623307 | None:intergenic | 20.0% |
| !! | ATTATAAGAAGAAAAACAAC+AGG | - | chr8_4:11623289-11623308 | None:intergenic | 20.0% |
| !! | ATATATAATAAAGGTGATGT+CGG | + | chr8_4:11623524-11623543 | Msa1313580:intron | 20.0% |
| !! | AATAAAATCTTGAATGCAAT+TGG | - | chr8_4:11624312-11624331 | None:intergenic | 20.0% |
| !!! | AGTTATTTCTAAAGGTTTTA+TGG | - | chr8_4:11624570-11624589 | None:intergenic | 20.0% |
| !!! | TTTCAAGTTTCTTGTATTTT+AGG | + | chr8_4:11624881-11624900 | Msa1313580:intron | 20.0% |
| !!! | GATTTTTTGTAACACATAAA+AGG | - | chr8_4:11625179-11625198 | None:intergenic | 20.0% |
| !!! | AAATTTAGTTCTTCCAAAAA+TGG | - | chr8_4:11625308-11625327 | None:intergenic | 20.0% |
| !! | TACATTGAAATAAAACCATT+TGG | - | chr8_4:11625382-11625401 | None:intergenic | 20.0% |
| !!! | AAAATATCATTTTGTAGTTG+AGG | + | chr8_4:11625525-11625544 | Msa1313580:intron | 20.0% |
| !!! | AAATATCATTTTGTAGTTGA+GGG | + | chr8_4:11625526-11625545 | Msa1313580:intron | 20.0% |
| !!! | TTTTTATTCATTACCTTACA+TGG | + | chr8_4:11625685-11625704 | Msa1313580:intron | 20.0% |
| !!! | TGTATGAAATTGTTTTATCA+AGG | + | chr8_4:11626117-11626136 | Msa1313580:intron | 20.0% |
| !!! | AGAAATAAAGAAAATTTTCC+AGG | - | chr8_4:11626309-11626328 | None:intergenic | 20.0% |
| !! | TAATGTATATTACTTGTCAT+AGG | + | chr8_4:11626334-11626353 | Msa1313580:intron | 20.0% |
| !!! | GAACAAGATGATTTTAATTT+GGG | + | chr8_4:11626422-11626441 | Msa1313580:CDS | 20.0% |
| !! | ATATTTATTCTCAAATGTCA+AGG | - | chr8_4:11626540-11626559 | None:intergenic | 20.0% |
| !!! | TTCAAGTTATCATAATCAAT+AGG | + | chr8_4:11627054-11627073 | Msa1313580:three_prime_UTR | 20.0% |
| !! | CGCTAATATTTAAAAATGAA+TGG | + | chr8_4:11627186-11627205 | Msa1313580:three_prime_UTR | 20.0% |
| !! | ATATTTAAAAATGAATGGAG+CGG | + | chr8_4:11627191-11627210 | Msa1313580:three_prime_UTR | 20.0% |
| !!! | ATTTTTTGGGTATTTTGTAA+TGG | + | chr8_4:11627258-11627277 | Msa1313580:three_prime_UTR | 20.0% |
| !! | TTCTAGAGAACAAAAATCAA+AGG | + | chr8_4:11620593-11620612 | Msa1313580:five_prime_UTR | 25.0% |
| ! | TCTAGAGAACAAAAATCAAA+GGG | + | chr8_4:11620594-11620613 | Msa1313580:five_prime_UTR | 25.0% |
| ! | AATTGAAGAAGAAGCAAATA+GGG | - | chr8_4:11620669-11620688 | None:intergenic | 25.0% |
| ! | TTTATTGAATTGGAATTGTG+GGG | + | chr8_4:11620887-11620906 | Msa1313580:intron | 25.0% |
| !!! | CAATTTTGTTTTTGCTTTGA+TGG | + | chr8_4:11620927-11620946 | Msa1313580:intron | 25.0% |
| ! | CTGATAATAATTGGAGAAAA+TGG | + | chr8_4:11621185-11621204 | Msa1313580:intron | 25.0% |
| ! | TTGAATTCAACAACAAAACA+CGG | - | chr8_4:11621583-11621602 | None:intergenic | 25.0% |
| !! | TTTGGATTAGAAATGTTGAT+TGG | + | chr8_4:11621728-11621747 | Msa1313580:intron | 25.0% |
| !! | GTCTTTGAATTTGATACTTT+TGG | - | chr8_4:11621888-11621907 | None:intergenic | 25.0% |
| !! | TGTCTAATATTGATTATAGG+AGG | - | chr8_4:11622621-11622640 | None:intergenic | 25.0% |
| !! | TGTCACTTCATATATCTATT+AGG | - | chr8_4:11622713-11622732 | None:intergenic | 25.0% |
| !!! | AGATTTTAATGTTTTCAGGA+TGG | + | chr8_4:11622954-11622973 | Msa1313580:intron | 25.0% |
| !!! | GATTTTAATGTTTTCAGGAT+GGG | + | chr8_4:11622955-11622974 | Msa1313580:intron | 25.0% |
| !! | TCCTTTATTTATTGTGAAGT+TGG | + | chr8_4:11623240-11623259 | Msa1313580:intron | 25.0% |
| ! | CATATGACTAATTCAATCTA+TGG | - | chr8_4:11623429-11623448 | None:intergenic | 25.0% |
| ! | ATTAGTCATATGTATTAGCT+TGG | + | chr8_4:11623437-11623456 | Msa1313580:intron | 25.0% |
| !! | ATCTTTTTACGTATAACTGA+TGG | + | chr8_4:11623933-11623952 | Msa1313580:intron | 25.0% |
| !!! | TATTTTTGCTCTGTTTACAT+TGG | - | chr8_4:11624170-11624189 | None:intergenic | 25.0% |
| ! | ATCTACAGATAACTCTATAA+CGG | + | chr8_4:11624195-11624214 | Msa1313580:intron | 25.0% |
| ! | TATAAACTATTTCGGTATGA+GGG | - | chr8_4:11624662-11624681 | None:intergenic | 25.0% |
| ! | TTATAAACTATTTCGGTATG+AGG | - | chr8_4:11624663-11624682 | None:intergenic | 25.0% |
| ! | ATAAAACTTATCATCTGAAG+AGG | + | chr8_4:11624679-11624698 | Msa1313580:intron | 25.0% |
| !! | TTTCTTTCTAGTCTATGTAT+TGG | + | chr8_4:11624783-11624802 | Msa1313580:intron | 25.0% |
| !! | TTCTTTCTAGTCTATGTATT+GGG | + | chr8_4:11624784-11624803 | Msa1313580:intron | 25.0% |
| ! | ATCACAATGAATATGTAAAC+AGG | + | chr8_4:11625049-11625068 | Msa1313580:intron | 25.0% |
| !!! | TGCTTTCTATTTTTTTCTTC+TGG | + | chr8_4:11625334-11625353 | Msa1313580:intron | 25.0% |
| ! | AATAAAACCATTTGGCTAAA+TGG | - | chr8_4:11625374-11625393 | None:intergenic | 25.0% |
| !!! | ATCACAAACTAGTTGTTTTA+AGG | - | chr8_4:11625654-11625673 | None:intergenic | 25.0% |
| !!! | ATGAAATTGTTTTATCAAGG+TGG | + | chr8_4:11626120-11626139 | Msa1313580:intron | 25.0% |
| !! | TTTGAAGCTATTGTATATGT+TGG | - | chr8_4:11626362-11626381 | None:intergenic | 25.0% |
| !!! | GGAACAAGATGATTTTAATT+TGG | + | chr8_4:11626421-11626440 | Msa1313580:CDS | 25.0% |
| ! | TTGTGTTACAGAAGAAATTA+TGG | - | chr8_4:11627128-11627147 | None:intergenic | 25.0% |
| ! | TAAAGCAAATTCCTATTTCA+TGG | + | chr8_4:11627283-11627302 | Msa1313580:three_prime_UTR | 25.0% |
| ! | TGAAATGAGATAGAATAGAA+TGG | - | chr8_4:11627362-11627381 | None:intergenic | 25.0% |
| ! | TCTAGAAACTTCCTTTTTGA+TGG | - | chr8_4:11620580-11620599 | None:intergenic | 30.0% |
| !! | TTTTAGAGAGAGTTAGAGAA+GGG | - | chr8_4:11620646-11620665 | None:intergenic | 30.0% |
| GAATTGAAGAAGAAGCAAAT+AGG | - | chr8_4:11620670-11620689 | None:intergenic | 30.0% | |
| ! | ATTTTGTGGCAGATGTATAA+TGG | + | chr8_4:11620978-11620997 | Msa1313580:intron | 30.0% |
| ! | TTTTGTGGCAGATGTATAAT+GGG | + | chr8_4:11620979-11620998 | Msa1313580:intron | 30.0% |
| GTGACTAAAGATATCAACTT+TGG | + | chr8_4:11621023-11621042 | Msa1313580:CDS | 30.0% | |
| !! | AAAGATATCAACTTTGGAGT+TGG | + | chr8_4:11621029-11621048 | Msa1313580:CDS | 30.0% |
| !! | AAGATATCAACTTTGGAGTT+GGG | + | chr8_4:11621030-11621049 | Msa1313580:CDS | 30.0% |
| AGAAAACAAGACAATACCTT+GGG | - | chr8_4:11621119-11621138 | None:intergenic | 30.0% | |
| !! | ATGTTGGCACTGATAATAAT+TGG | + | chr8_4:11621176-11621195 | Msa1313580:intron | 30.0% |
| !! | ATGTTGGCACTGATAATAAT+TGG | + | chr8_4:11621176-11621195 | Msa1313580:intron | 30.0% |
| TTGAATGTAAGTACATCTGT+TGG | + | chr8_4:11621317-11621336 | Msa1313580:intron | 30.0% | |
| TGCATCACATTTCAAATTGA+AGG | - | chr8_4:11621550-11621569 | None:intergenic | 30.0% | |
| ! | CAATTTGAAATGTGATGCAT+AGG | + | chr8_4:11621551-11621570 | Msa1313580:intron | 30.0% |
| ! | TTGTAAGTTGAAATGCGATT+TGG | + | chr8_4:11621710-11621729 | Msa1313580:intron | 30.0% |
| TGATAATTGAGAAAAGCCAA+AGG | + | chr8_4:11621828-11621847 | Msa1313580:CDS | 30.0% | |
| AAAGACAAAGCCAAAAATCT+TGG | + | chr8_4:11621902-11621921 | Msa1313580:CDS | 30.0% | |
| ! | AACACTTATAGGATGTTTTG+AGG | - | chr8_4:11622011-11622030 | None:intergenic | 30.0% |
| TCAAAGAAAGATAGCAACAT+TGG | - | chr8_4:11622172-11622191 | None:intergenic | 30.0% | |
| !! | TGTTTTAAATTGTTTGCTGC+TGG | + | chr8_4:11622743-11622762 | Msa1313580:intron | 30.0% |
| TTGGTACTATATCTGCAAAT+GGG | + | chr8_4:11622795-11622814 | Msa1313580:CDS | 30.0% | |
| ! | ATATTGGAGAATTGATAGCA+AGG | + | chr8_4:11622825-11622844 | Msa1313580:CDS | 30.0% |
| ! | TATTGGAGAATTGATAGCAA+GGG | + | chr8_4:11622826-11622845 | Msa1313580:CDS | 30.0% |
| ! | TCTTTTGTCACTGACATATA+TGG | + | chr8_4:11623093-11623112 | Msa1313580:intron | 30.0% |
| CTGTGATAAACATATGATGA+TGG | + | chr8_4:11623164-11623183 | Msa1313580:intron | 30.0% | |
| !! | ACATATGATGATGGTATACT+TGG | + | chr8_4:11623173-11623192 | Msa1313580:intron | 30.0% |
| !! | CATATGATGATGGTATACTT+GGG | + | chr8_4:11623174-11623193 | Msa1313580:intron | 30.0% |
| !! | ATATGATGATGGTATACTTG+GGG | + | chr8_4:11623175-11623194 | Msa1313580:intron | 30.0% |
| GCCAACTTCACAATAAATAA+AGG | - | chr8_4:11623244-11623263 | None:intergenic | 30.0% | |
| TATTTATTGTGAAGTTGGCA+AGG | + | chr8_4:11623245-11623264 | Msa1313580:intron | 30.0% | |
| !!! | CAACAGGGTCTTTTTTATAA+AGG | - | chr8_4:11623273-11623292 | None:intergenic | 30.0% |
| ! | AATCATGTGATCATTTGTTG+AGG | + | chr8_4:11623306-11623325 | Msa1313580:intron | 30.0% |
| ! | AAATTTTCTTGTCATGGATG+AGG | - | chr8_4:11623579-11623598 | None:intergenic | 30.0% |
| !! | TGTCTGAAATTTTCTTGTCA+TGG | - | chr8_4:11623585-11623604 | None:intergenic | 30.0% |
| TGACAAGAAAATTTCAGACA+TGG | + | chr8_4:11623585-11623604 | Msa1313580:CDS | 30.0% | |
| GACAAGAAAATTTCAGACAT+GGG | + | chr8_4:11623586-11623605 | Msa1313580:CDS | 30.0% | |
| TTAAGGTAACAGGTTTATCT+TGG | + | chr8_4:11623817-11623836 | Msa1313580:intron | 30.0% | |
| GGGCACAAAATAACAAATAA+TGG | + | chr8_4:11624124-11624143 | Msa1313580:intron | 30.0% | |
| GTTATAGAGTTATCTGTAGA+TGG | - | chr8_4:11624196-11624215 | None:intergenic | 30.0% | |
| TCTACAGATAACTCTATAAC+GGG | + | chr8_4:11624196-11624215 | Msa1313580:intron | 30.0% | |
| TCTTGAATGCAATTGGAATT+TGG | - | chr8_4:11624305-11624324 | None:intergenic | 30.0% | |
| TCCTGTTTATAAGAGAAAGT+TGG | + | chr8_4:11624419-11624438 | Msa1313580:intron | 30.0% | |
| CCTGTTTATAAGAGAAAGTT+GGG | + | chr8_4:11624420-11624439 | Msa1313580:intron | 30.0% | |
| !! | TCAACAAAAGTTGATGTATC+TGG | + | chr8_4:11624443-11624462 | Msa1313580:intron | 30.0% |
| !! | TCAACAAAAGTTGATGTATC+TGG | - | chr8_4:11624443-11624462 | None:intergenic | 30.0% |
| TGTTCTCTTATAAATAGGAC+CGG | + | chr8_4:11624511-11624530 | Msa1313580:intron | 30.0% | |
| GTCATAGATGAATATTCAGA+TGG | + | chr8_4:11624712-11624731 | Msa1313580:intron | 30.0% | |
| ! | TCTTTCTAGTCTATGTATTG+GGG | + | chr8_4:11624785-11624804 | Msa1313580:intron | 30.0% |
| GAACCAAAGAATAGTTATGT+TGG | - | chr8_4:11625157-11625176 | None:intergenic | 30.0% | |
| CAAAAATGGAGAAAAATACC+TGG | - | chr8_4:11625294-11625313 | None:intergenic | 30.0% | |
| ! | CAGGTATTTTTCTCCATTTT+TGG | + | chr8_4:11625292-11625311 | Msa1313580:intron | 30.0% |
| ATTCGATAAAGAAAAAGCTC+AGG | + | chr8_4:11625574-11625593 | Msa1313580:CDS | 30.0% | |
| ATAAAGAAAAAGCTCAGGAA+CGG | + | chr8_4:11625579-11625598 | Msa1313580:CDS | 30.0% | |
| AAATGACAAATTGAGTTACC+TGG | - | chr8_4:11625830-11625849 | None:intergenic | 30.0% | |
| ! | TTGTCATTTCTGAATTCTGA+TGG | + | chr8_4:11625841-11625860 | Msa1313580:intron | 30.0% |
| ! | TGTCATTTCTGAATTCTGAT+GGG | + | chr8_4:11625842-11625861 | Msa1313580:intron | 30.0% |
| ! | AAAACTTTTACTGTTCTGTG+TGG | + | chr8_4:11625931-11625950 | Msa1313580:intron | 30.0% |
| ATTCATAGTTAGTGTGAAAC+AGG | + | chr8_4:11626033-11626052 | Msa1313580:intron | 30.0% | |
| !! | AAATTGTTTTATCAAGGTGG+TGG | + | chr8_4:11626123-11626142 | Msa1313580:intron | 30.0% |
| TATACAATAGCTTCAAATGC+TGG | + | chr8_4:11626365-11626384 | Msa1313580:CDS | 30.0% | |
| ATAATCTCAATTGCGTAAAC+AGG | - | chr8_4:11626473-11626492 | None:intergenic | 30.0% | |
| TAAAGTTGTTAGAACAGCTT+TGG | + | chr8_4:11626668-11626687 | Msa1313580:CDS | 30.0% | |
| TGTCATTATATGATCTTACC+TGG | - | chr8_4:11626703-11626722 | None:intergenic | 30.0% | |
| ! | CATCAGTTTTCTATTTATCG+AGG | + | chr8_4:11626934-11626953 | Msa1313580:three_prime_UTR | 30.0% |
| AAGCTGCTAAAGTTTAAACT+TGG | + | chr8_4:11626957-11626976 | Msa1313580:three_prime_UTR | 30.0% | |
| AGCTGCTAAAGTTTAAACTT+GGG | + | chr8_4:11626958-11626977 | Msa1313580:three_prime_UTR | 30.0% | |
| !!! | TAAAACTTGTCCCGTTTTTT+AGG | + | chr8_4:11627084-11627103 | Msa1313580:three_prime_UTR | 30.0% |
| ATGAATGACACCTAAAAAAC+GGG | - | chr8_4:11627097-11627116 | None:intergenic | 30.0% | |
| GATGAATGACACCTAAAAAA+CGG | - | chr8_4:11627098-11627117 | None:intergenic | 30.0% | |
| CAGAAGAAATTATGGTACAA+AGG | - | chr8_4:11627120-11627139 | None:intergenic | 30.0% | |
| CAAATTCCTATTTCATGGTT+TGG | + | chr8_4:11627288-11627307 | Msa1313580:three_prime_UTR | 30.0% | |
| ATACATCCAAACCATGAAAT+AGG | - | chr8_4:11627297-11627316 | None:intergenic | 30.0% | |
| !! | GAAACTTCCTTTTTGATGGT+TGG | - | chr8_4:11620576-11620595 | None:intergenic | 35.0% |
| GAGAACAAAAATCAAAGGGT+AGG | + | chr8_4:11620598-11620617 | Msa1313580:five_prime_UTR | 35.0% | |
| !!! | GTTTTAGAGAGAGTTAGAGA+AGG | - | chr8_4:11620647-11620666 | None:intergenic | 35.0% |
| AACGGTAAATTGTGAAGGTT+GGG | - | chr8_4:11620716-11620735 | None:intergenic | 35.0% | |
| ATACATTGTAGTTGCAGCAA+CGG | - | chr8_4:11620734-11620753 | None:intergenic | 35.0% | |
| !! | GAGGTTTTTGTTCTTTGAAG+TGG | - | chr8_4:11620794-11620813 | None:intergenic | 35.0% |
| TTTGTGGCAGATGTATAATG+GGG | + | chr8_4:11620980-11620999 | Msa1313580:intron | 35.0% | |
| !! | ATAATGGGGCATTGTTAAGA+AGG | + | chr8_4:11620994-11621013 | Msa1313580:CDS | 35.0% |
| !! | AGATATCAACTTTGGAGTTG+GGG | + | chr8_4:11621031-11621050 | Msa1313580:CDS | 35.0% |
| CAGAAAACAAGACAATACCT+TGG | - | chr8_4:11621120-11621139 | None:intergenic | 35.0% | |
| AAGTAGTAACGCTACTAATG+AGG | - | chr8_4:11621230-11621249 | None:intergenic | 35.0% | |
| TGTAGCACATTTCAGATTGA+AGG | - | chr8_4:11621461-11621480 | None:intergenic | 35.0% | |
| ! | CAATCTGAAATGTGCTACAT+AGG | + | chr8_4:11621462-11621481 | Msa1313580:intron | 35.0% |
| TTGAGTGTAAGTACTTGTGT+CGG | + | chr8_4:11621498-11621517 | Msa1313580:intron | 35.0% | |
| CACCTTATAGGTTTGTCAAT+GGG | + | chr8_4:11621648-11621667 | Msa1313580:intron | 35.0% | |
| GTTGATTGGAGAAATTGACA+TGG | + | chr8_4:11621742-11621761 | Msa1313580:intron | 35.0% | |
| AAATTGACATGGTGAAGTGA+TGG | + | chr8_4:11621753-11621772 | Msa1313580:intron | 35.0% | |
| ACTTCGAAAAAGCTTCTTGT+AGG | - | chr8_4:11622079-11622098 | None:intergenic | 35.0% | |
| TGGAAGCAGAGAAAAAATGT+TGG | - | chr8_4:11622338-11622357 | None:intergenic | 35.0% | |
| !!! | AACATTTTTTCTCTGCTTCC+AGG | + | chr8_4:11622337-11622356 | Msa1313580:intron | 35.0% |
| AATGTCATGGATTTGCGTAA+TGG | + | chr8_4:11622430-11622449 | Msa1313580:CDS | 35.0% | |
| !!! | CGGTACAACCAATTTTTTGT+CGG | - | chr8_4:11622679-11622698 | None:intergenic | 35.0% |
| GTTGGTACTATATCTGCAAA+TGG | + | chr8_4:11622794-11622813 | Msa1313580:CDS | 35.0% | |
| TGGTACTATATCTGCAAATG+GGG | + | chr8_4:11622796-11622815 | Msa1313580:CDS | 35.0% | |
| GAACACTATGGATAATGAGT+TGG | + | chr8_4:11622977-11622996 | Msa1313580:CDS | 35.0% | |
| ! | AATGAGTTGGAAGTAGTAGA+AGG | + | chr8_4:11622990-11623009 | Msa1313580:CDS | 35.0% |
| TGCACTAGCATGTTATTGTA+CGG | + | chr8_4:11623133-11623152 | Msa1313580:intron | 35.0% | |
| !! | TATGATGATGGTATACTTGG+GGG | + | chr8_4:11623176-11623195 | Msa1313580:intron | 35.0% |
| !!! | ATGTCGGTTTTGTTAGGAAT+TGG | + | chr8_4:11623540-11623559 | Msa1313580:intron | 35.0% |
| TTGTCATGGATGAGGATAAA+GGG | - | chr8_4:11623571-11623590 | None:intergenic | 35.0% | |
| TTATCTGTCCTGCTATCTAA+AGG | + | chr8_4:11623840-11623859 | Msa1313580:intron | 35.0% | |
| ATCTAAAGGTCCTACAAACT+TGG | + | chr8_4:11623854-11623873 | Msa1313580:intron | 35.0% | |
| AAACCAGAAACCAAGTTTGT+AGG | - | chr8_4:11623867-11623886 | None:intergenic | 35.0% | |
| TGTTGCTACTACTTACAACT+TGG | + | chr8_4:11623960-11623979 | Msa1313580:intron | 35.0% | |
| GTTGCTACTACTTACAACTT+GGG | + | chr8_4:11623961-11623980 | Msa1313580:intron | 35.0% | |
| TATGTTGTCGATGTTACACA+AGG | + | chr8_4:11624015-11624034 | Msa1313580:intron | 35.0% | |
| ATGTTGTCGATGTTACACAA+GGG | + | chr8_4:11624016-11624035 | Msa1313580:intron | 35.0% | |
| CTACAGATAACTCTATAACG+GGG | + | chr8_4:11624197-11624216 | Msa1313580:intron | 35.0% | |
| TACAGATAACTCTATAACGG+GGG | + | chr8_4:11624198-11624217 | Msa1313580:intron | 35.0% | |
| TCAGCGATCGTATATAGAAT+AGG | - | chr8_4:11624264-11624283 | None:intergenic | 35.0% | |
| CCCAACTTTCTCTTATAAAC+AGG | - | chr8_4:11624423-11624442 | None:intergenic | 35.0% | |
| !! | CTATAAAAGCTCCTGGTTTT+GGG | + | chr8_4:11624910-11624929 | Msa1313580:CDS | 35.0% |
| !!! | TATAAAAGCTCCTGGTTTTG+GGG | + | chr8_4:11624911-11624930 | Msa1313580:CDS | 35.0% |
| GAGCCAACATAACTATTCTT+TGG | + | chr8_4:11625151-11625170 | Msa1313580:intron | 35.0% | |
| GATGACACTATTGTTCTACA+TGG | + | chr8_4:11625232-11625251 | Msa1313580:CDS | 35.0% | |
| !! | GTTTTTGCCATTTAGCCAAA+TGG | + | chr8_4:11625364-11625383 | Msa1313580:intron | 35.0% |
| ! | TAGCAGGCTGTTGATAAAAA+TGG | + | chr8_4:11625465-11625484 | Msa1313580:intron | 35.0% |
| TCATTACCTTACATGGAAGA+TGG | + | chr8_4:11625692-11625711 | Msa1313580:intron | 35.0% | |
| TTAGATCCATCTTCCATGTA+AGG | - | chr8_4:11625701-11625720 | None:intergenic | 35.0% | |
| AGATGGATCTAAACATCTAC+AGG | + | chr8_4:11625709-11625728 | Msa1313580:intron | 35.0% | |
| CTTATATGCTAGCAAAGTCT+TGG | + | chr8_4:11626155-11626174 | Msa1313580:CDS | 35.0% | |
| GAACCTTCAAACTAAAAACG+AGG | + | chr8_4:11626179-11626198 | Msa1313580:CDS | 35.0% | |
| !!! | CATCCTCGTTTTTAGTTTGA+AGG | - | chr8_4:11626185-11626204 | None:intergenic | 35.0% |
| GATTATTCAGAATGCACTCA+AGG | + | chr8_4:11626221-11626240 | Msa1313580:CDS | 35.0% | |
| GGTAAAGTCAGAATAGTGAA+GGG | - | chr8_4:11626288-11626307 | None:intergenic | 35.0% | |
| AGGTAAAGTCAGAATAGTGA+AGG | - | chr8_4:11626289-11626308 | None:intergenic | 35.0% | |
| TTCACTATTCTGACTTTACC+TGG | + | chr8_4:11626288-11626307 | Msa1313580:intron | 35.0% | |
| !! | CAACAATTTGCTGTGAACTA+GGG | - | chr8_4:11626402-11626421 | None:intergenic | 35.0% |
| ACAGCAAAGGATAATCACAA+TGG | - | chr8_4:11626504-11626523 | None:intergenic | 35.0% | |
| TTCGATAAACAAGACAGCAA+AGG | - | chr8_4:11626517-11626536 | None:intergenic | 35.0% | |
| GATGCTTATTCTGCTAAAAC+AGG | + | chr8_4:11626603-11626622 | Msa1313580:intron | 35.0% | |
| AACAGGAACCTATGTTGATA+TGG | + | chr8_4:11626620-11626639 | Msa1313580:intron | 35.0% | |
| AACCTATGTTGATATGGTGA+AGG | + | chr8_4:11626626-11626645 | Msa1313580:CDS | 35.0% | |
| GCTGTTCTAACAACTTTAAC+AGG | - | chr8_4:11626666-11626685 | None:intergenic | 35.0% | |
| TAGTCCAAATCATCCATATC+TGG | - | chr8_4:11626877-11626896 | None:intergenic | 35.0% | |
| GCTGCTAAAGTTTAAACTTG+GGG | + | chr8_4:11626959-11626978 | Msa1313580:three_prime_UTR | 35.0% | |
| CTGCTAAAGTTTAAACTTGG+GGG | + | chr8_4:11626960-11626979 | Msa1313580:three_prime_UTR | 35.0% | |
| TGCTAAAGTTTAAACTTGGG+GGG | + | chr8_4:11626961-11626980 | Msa1313580:three_prime_UTR | 35.0% | |
| TAAAAATGAATGGAGCGGAA+TGG | + | chr8_4:11627196-11627215 | Msa1313580:three_prime_UTR | 35.0% | |
| ATATGGGCCAACCATCAAAA+AGG | + | chr8_4:11620566-11620585 | Msa1313580:five_prime_UTR | 40.0% | |
| ACGGTAAATTGTGAAGGTTG+GGG | - | chr8_4:11620715-11620734 | None:intergenic | 40.0% | |
| CAACGGTAAATTGTGAAGGT+TGG | - | chr8_4:11620717-11620736 | None:intergenic | 40.0% | |
| !! | CTTTGAAGTGGAAGAAGCTA+GGG | - | chr8_4:11620782-11620801 | None:intergenic | 40.0% |
| !! | TCTTTGAAGTGGAAGAAGCT+AGG | - | chr8_4:11620783-11620802 | None:intergenic | 40.0% |
| ! | AGATTGGTTATGGTCTTACG+AGG | - | chr8_4:11620813-11620832 | None:intergenic | 40.0% |
| ! | TATGCTTCAAGGTGTTTCTG+AGG | + | chr8_4:11621064-11621083 | Msa1313580:CDS | 40.0% |
| TGACCTATTAAGCTCTGTCA+TGG | + | chr8_4:11621151-11621170 | Msa1313580:intron | 40.0% | |
| TGTCCATGACAGAGCTTAAT+AGG | - | chr8_4:11621157-11621176 | None:intergenic | 40.0% | |
| TAGTAACGCTACTAATGAGG+CGG | - | chr8_4:11621227-11621246 | None:intergenic | 40.0% | |
| TGTCAACAACAGAGCTTCAT+AGG | - | chr8_4:11621262-11621281 | None:intergenic | 40.0% | |
| AAGCTCTGTTGTTGACATGT+TGG | + | chr8_4:11621265-11621284 | Msa1313580:intron | 40.0% | |
| ! | TTTTAGATTGAAGTCGTGCG+AGG | - | chr8_4:11621360-11621379 | None:intergenic | 40.0% |
| TGTATGGCAAACACTAACAC+GGG | - | chr8_4:11621425-11621444 | None:intergenic | 40.0% | |
| CTGTATGGCAAACACTAACA+CGG | - | chr8_4:11621426-11621445 | None:intergenic | 40.0% | |
| ! | TTTCAGATTGAAGGCATGTC+AGG | - | chr8_4:11621452-11621471 | None:intergenic | 40.0% |
| TGTTGCTAGTTGCACCTTAT+AGG | + | chr8_4:11621636-11621655 | Msa1313580:intron | 40.0% | |
| GCACCTTATAGGTTTGTCAA+TGG | + | chr8_4:11621647-11621666 | Msa1313580:intron | 40.0% | |
| CACCCATTGACAAACCTATA+AGG | - | chr8_4:11621653-11621672 | None:intergenic | 40.0% | |
| CTTATAGGTTTGTCAATGGG+TGG | + | chr8_4:11621651-11621670 | Msa1313580:intron | 40.0% | |
| ! | TGTTTCGAATTGGTTGACTC+AGG | + | chr8_4:11621796-11621815 | Msa1313580:intron | 40.0% |
| ! | GTTTCGAATTGGTTGACTCA+GGG | + | chr8_4:11621797-11621816 | Msa1313580:intron | 40.0% |
| ! | GAGATCAGCACCAAGATTTT+TGG | - | chr8_4:11621915-11621934 | None:intergenic | 40.0% |
| AACTATGGCCAACATGCAAT+GGG | - | chr8_4:11622260-11622279 | None:intergenic | 40.0% | |
| AAACTATGGCCAACATGCAA+TGG | - | chr8_4:11622261-11622280 | None:intergenic | 40.0% | |
| ! | GAGTATTGCCTGAGTCAAAA+CGG | - | chr8_4:11622377-11622396 | None:intergenic | 40.0% |
| ACTCAGGCAATACTCATAGA+AGG | + | chr8_4:11622382-11622401 | Msa1313580:CDS | 40.0% | |
| TACACCAGAAGAAATAACCC+AGG | + | chr8_4:11622513-11622532 | Msa1313580:CDS | 40.0% | |
| TCTATTAGGAAGACGACTAG+CGG | - | chr8_4:11622699-11622718 | None:intergenic | 40.0% | |
| ! | AGAATTGATAGCAAGGGCAA+TGG | + | chr8_4:11622832-11622851 | Msa1313580:CDS | 40.0% |
| !! | TTTTCAGGATGGGAACACTA+TGG | + | chr8_4:11622965-11622984 | Msa1313580:intron | 40.0% |
| GAAGGAATGAAGTTGTCTAG+AGG | + | chr8_4:11623008-11623027 | Msa1313580:CDS | 40.0% | |
| !! | ATGATGATGGTATACTTGGG+GGG | + | chr8_4:11623177-11623196 | Msa1313580:intron | 40.0% |
| TTGTTGAGGACACAGTGTTA+TGG | + | chr8_4:11623320-11623339 | Msa1313580:intron | 40.0% | |
| !!! | AAGGTGATGTCGGTTTTGTT+AGG | + | chr8_4:11623534-11623553 | Msa1313580:intron | 40.0% |
| TGTCATGGATGAGGATAAAG+GGG | - | chr8_4:11623570-11623589 | None:intergenic | 40.0% | |
| CTTGTCATGGATGAGGATAA+AGG | - | chr8_4:11623572-11623591 | None:intergenic | 40.0% | |
| CAGCTCCAATACTTTCAACA+GGG | - | chr8_4:11623614-11623633 | None:intergenic | 40.0% | |
| ACAGCTCCAATACTTTCAAC+AGG | - | chr8_4:11623615-11623634 | None:intergenic | 40.0% | |
| ! | AGTATTGGAGCTGTCAGTAA+CGG | + | chr8_4:11623621-11623640 | Msa1313580:CDS | 40.0% |
| AGATGTTGACAGTGATGCAT+TGG | + | chr8_4:11623761-11623780 | Msa1313580:CDS | 40.0% | |
| ATACTCAACAAGCATCATGC+CGG | + | chr8_4:11623792-11623811 | Msa1313580:CDS | 40.0% | |
| TAAACCTGTTACCTTAAGCC+CGG | - | chr8_4:11623814-11623833 | None:intergenic | 40.0% | |
| TTGTAGGACCTTTAGATAGC+AGG | - | chr8_4:11623851-11623870 | None:intergenic | 40.0% | |
| TATGTTGTCGATGTTACACG+AGG | + | chr8_4:11624059-11624078 | Msa1313580:intron | 40.0% | |
| ATGTTGTCGATGTTACACGA+GGG | + | chr8_4:11624060-11624079 | Msa1313580:intron | 40.0% | |
| TATGTTGTCGATGTTACACG+AGG | + | chr8_4:11624059-11624078 | Msa1313580:intron | 40.0% | |
| ATGTTGTCGATGTTACACGA+GGG | + | chr8_4:11624060-11624079 | Msa1313580:intron | 40.0% | |
| ! | GAATTTGGAACGCTTTACAC+AGG | - | chr8_4:11624290-11624309 | None:intergenic | 40.0% |
| ACGATATATAGTACTCCCTC+TGG | + | chr8_4:11624396-11624415 | Msa1313580:intron | 40.0% | |
| CTCTTATAAACAGGACCAGA+GGG | - | chr8_4:11624414-11624433 | None:intergenic | 40.0% | |
| TCTCTTATAAACAGGACCAG+AGG | - | chr8_4:11624415-11624434 | None:intergenic | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | + | chr8_4:11624514-11624533 | Msa1313580:intron | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | + | chr8_4:11624515-11624534 | Msa1313580:intron | 40.0% | |
| AATGCAAGCTACTTGGAACT+TGG | + | chr8_4:11624810-11624829 | Msa1313580:intron | 40.0% | |
| GTTTGTGCTATAAAAGCTCC+TGG | + | chr8_4:11624903-11624922 | Msa1313580:CDS | 40.0% | |
| ! | GCTATAAAAGCTCCTGGTTT+TGG | + | chr8_4:11624909-11624928 | Msa1313580:CDS | 40.0% |
| GATGATCTTGCGATTCTTAC+TGG | + | chr8_4:11624954-11624973 | Msa1313580:CDS | 40.0% | |
| !! | TTTTGCTGTGCCAAGCATTT+CGG | - | chr8_4:11625117-11625136 | None:intergenic | 40.0% |
| AATGCTTGGCACAGCAAAAA+AGG | + | chr8_4:11625118-11625137 | Msa1313580:CDS | 40.0% | |
| GACACTATTGTTCTACATGG+TGG | + | chr8_4:11625235-11625254 | Msa1313580:CDS | 40.0% | |
| ACTATTGTTCTACATGGTGG+CGG | + | chr8_4:11625238-11625257 | Msa1313580:CDS | 40.0% | |
| ! | TGTATCAGACCTTTGATAGC+AGG | + | chr8_4:11625449-11625468 | Msa1313580:intron | 40.0% |
| TATCAACAGCCTGCTATCAA+AGG | - | chr8_4:11625461-11625480 | None:intergenic | 40.0% | |
| GGATCTAAACATCTACAGGT+TGG | + | chr8_4:11625713-11625732 | Msa1313580:intron | 40.0% | |
| ! | TCTAAACATCTACAGGTTGG+TGG | + | chr8_4:11625716-11625735 | Msa1313580:intron | 40.0% |
| AAGTTGGGGAAAGGAAAGAT+AGG | + | chr8_4:11625753-11625772 | Msa1313580:CDS | 40.0% | |
| AGTTGGGGAAAGGAAAGATA+GGG | + | chr8_4:11625754-11625773 | Msa1313580:CDS | 40.0% | |
| AGAGCAGTGTTGTCAAATAG+TGG | + | chr8_4:11625884-11625903 | Msa1313580:intron | 40.0% | |
| ATAGTGGCACTATAGTGTAG+TGG | + | chr8_4:11625900-11625919 | Msa1313580:intron | 40.0% | |
| AAAAACGAGGATGAGAGAAG+AGG | + | chr8_4:11626192-11626211 | Msa1313580:CDS | 40.0% | |
| !!! | GCTTCAAATGCTGGTTTTGA+TGG | + | chr8_4:11626374-11626393 | Msa1313580:CDS | 40.0% |
| !! | CCAACAATTTGCTGTGAACT+AGG | - | chr8_4:11626403-11626422 | None:intergenic | 40.0% |
| CCTAGTTCACAGCAAATTGT+TGG | + | chr8_4:11626400-11626419 | Msa1313580:CDS | 40.0% | |
| !! | TTGGGTTTTGATGCTGCTAA+AGG | + | chr8_4:11626440-11626459 | Msa1313580:CDS | 40.0% |
| AGCCTTCACCATATCAACAT+AGG | - | chr8_4:11626631-11626650 | None:intergenic | 40.0% | |
| TATGTTGATATGGTGAAGGC+TGG | + | chr8_4:11626630-11626649 | Msa1313580:CDS | 40.0% | |
| AGCAACGAAACACTGCATTA+GGG | - | chr8_4:11626787-11626806 | None:intergenic | 40.0% | |
| TAGCAACGAAACACTGCATT+AGG | - | chr8_4:11626788-11626807 | None:intergenic | 40.0% | |
| ATTCTCCACAATAGATGCCT+CGG | - | chr8_4:11626821-11626840 | None:intergenic | 40.0% | |
| ACAAGAATAAACCTCCCCAA+AGG | + | chr8_4:11626848-11626867 | Msa1313580:CDS | 40.0% | |
| CAAGAATAAACCTCCCCAAA+GGG | + | chr8_4:11626849-11626868 | Msa1313580:CDS | 40.0% | |
| ! | CTTTCATCGTTTGTTGAAGC+AGG | - | chr8_4:11626904-11626923 | None:intergenic | 40.0% |
| AACTTGGGGGGTCTAATTTA+AGG | + | chr8_4:11626973-11626992 | Msa1313580:three_prime_UTR | 40.0% | |
| AGCCTACGATTCAATGTCAT+AGG | + | chr8_4:11627015-11627034 | Msa1313580:three_prime_UTR | 40.0% | |
| GCCTACGATTCAATGTCATA+GGG | + | chr8_4:11627016-11627035 | Msa1313580:three_prime_UTR | 40.0% | |
| TCCCTATGACATTGAATCGT+AGG | - | chr8_4:11627020-11627039 | None:intergenic | 40.0% | |
| GCAGCAACGGTAAATTGTGA+AGG | - | chr8_4:11620721-11620740 | None:intergenic | 45.0% | |
| TGAGGCTGTCAAAGTTACCA+TGG | + | chr8_4:11621091-11621110 | Msa1313580:CDS | 45.0% | |
| GAGGCTGTCAAAGTTACCAT+GGG | + | chr8_4:11621092-11621111 | Msa1313580:CDS | 45.0% | |
| AAGCTCTGTCATGGACATGT+TGG | + | chr8_4:11621160-11621179 | Msa1313580:intron | 45.0% | |
| AGAAAAGCCAAAGGAACCCT+AGG | + | chr8_4:11621837-11621856 | Msa1313580:CDS | 45.0% | |
| GAAAAGCCAAAGGAACCCTA+GGG | + | chr8_4:11621838-11621857 | Msa1313580:CDS | 45.0% | |
| ACTATGGCCAACATGCAATG+GGG | - | chr8_4:11622259-11622278 | None:intergenic | 45.0% | |
| !!! | TTGTGCAACCGTTTTGACTC+AGG | + | chr8_4:11622366-11622385 | Msa1313580:CDS | 45.0% |
| TGCTGCTGGTGTAAATGTCA+TGG | + | chr8_4:11622417-11622436 | Msa1313580:CDS | 45.0% | |
| !! | TGCACCTGGGTTATTTCTTC+TGG | - | chr8_4:11622520-11622539 | None:intergenic | 45.0% |
| GAAGAAATAACCCAGGTGCA+AGG | + | chr8_4:11622520-11622539 | Msa1313580:intron | 45.0% | |
| CTTGAGAATTCCTTGCACCT+GGG | - | chr8_4:11622533-11622552 | None:intergenic | 45.0% | |
| TCTTGAGAATTCCTTGCACC+TGG | - | chr8_4:11622534-11622553 | None:intergenic | 45.0% | |
| CAAGGGCAATGGAGAAAGTT+GGG | + | chr8_4:11622843-11622862 | Msa1313580:CDS | 45.0% | |
| ATGGAGAAAGTTGGGAAGGA+AGG | + | chr8_4:11622851-11622870 | Msa1313580:CDS | 45.0% | |
| ! | GGGTTCCCTGTTGAAAGTAT+TGG | + | chr8_4:11623606-11623625 | Msa1313580:CDS | 45.0% |
| AAGACCACTCCTAGTTGTTG+CGG | + | chr8_4:11623737-11623756 | Msa1313580:CDS | 45.0% | |
| CAACATCTTCCGCAACAACT+AGG | - | chr8_4:11623749-11623768 | None:intergenic | 45.0% | |
| TACTCAACAAGCATCATGCC+GGG | + | chr8_4:11623793-11623812 | Msa1313580:CDS | 45.0% | |
| GGTCCTACAAACTTGGTTTC+TGG | + | chr8_4:11623861-11623880 | Msa1313580:intron | 45.0% | |
| GATCTTGCGATTCTTACTGG+AGG | + | chr8_4:11624957-11624976 | Msa1313580:CDS | 45.0% | |
| ! | TTTGCTGTGCCAAGCATTTC+GGG | - | chr8_4:11625116-11625135 | None:intergenic | 45.0% |
| CTATTGTTCTACATGGTGGC+GGG | + | chr8_4:11625239-11625258 | Msa1313580:CDS | 45.0% | |
| ! | TATTGTTCTACATGGTGGCG+GGG | + | chr8_4:11625240-11625259 | Msa1313580:CDS | 45.0% |
| TATCGAAGAGAGATGTGTCC+AGG | + | chr8_4:11625273-11625292 | Msa1313580:CDS | 45.0% | |
| ATCCATATCTGGCACCCTTT+GGG | - | chr8_4:11626866-11626885 | None:intergenic | 45.0% | |
| GGTGCCAGATATGGATGATT+TGG | + | chr8_4:11626870-11626889 | Msa1313580:CDS | 45.0% | |
| !! | AATGGACTAGAGCAGCGTAA+CGG | + | chr8_4:11627214-11627233 | Msa1313580:three_prime_UTR | 45.0% |
| !! | TATATATAAATTATAAACTA+TGG | - | chr8_4:11622275-11622294 | None:intergenic | 5.0% |
| !! | AGGTGTTTCTGAGGTTGCTG+AGG | + | chr8_4:11621073-11621092 | Msa1313580:CDS | 50.0% |
| CAAAGTTACCATGGGACCCA+AGG | + | chr8_4:11621100-11621119 | Msa1313580:CDS | 50.0% | |
| AGACAATACCTTGGGTCCCA+TGG | - | chr8_4:11621111-11621130 | None:intergenic | 50.0% | |
| AGGCATGTCAGGTGTCTGTA+TGG | - | chr8_4:11621441-11621460 | None:intergenic | 50.0% | |
| AGGCATGTCAAGTGTCTCTG+TGG | - | chr8_4:11621530-11621549 | None:intergenic | 50.0% | |
| TTGTGACCCTAGGGTTCCTT+TGG | - | chr8_4:11621847-11621866 | None:intergenic | 50.0% | |
| AAGGAACCCTAGGGTCACAA+AGG | + | chr8_4:11621847-11621866 | Msa1313580:CDS | 50.0% | |
| AACCCTAGGGTCACAAAGGA+TGG | + | chr8_4:11621851-11621870 | Msa1313580:CDS | 50.0% | |
| CACCATCCTTTGTGACCCTA+GGG | - | chr8_4:11621856-11621875 | None:intergenic | 50.0% | |
| ACACCATCCTTTGTGACCCT+AGG | - | chr8_4:11621857-11621876 | None:intergenic | 50.0% | |
| !! | TGGTGCTGATCTCATCAAGC+AGG | + | chr8_4:11621922-11621941 | Msa1313580:CDS | 50.0% |
| TGCTGATCTCATCAAGCAGG+TGG | + | chr8_4:11621925-11621944 | Msa1313580:CDS | 50.0% | |
| TCTCATCAAGCAGGTGGCTA+AGG | + | chr8_4:11621931-11621950 | Msa1313580:CDS | 50.0% | |
| AAGGCTACCAACAGTACTGC+AGG | + | chr8_4:11621950-11621969 | Msa1313580:CDS | 50.0% | |
| ACCAACAGTACTGCAGGAGA+CGG | + | chr8_4:11621956-11621975 | Msa1313580:CDS | 50.0% | |
| GTTTCCACCCCATTGCATGT+TGG | + | chr8_4:11622249-11622268 | Msa1313580:intron | 50.0% | |
| ACGGTTGCACAAGTTGTACC+TGG | - | chr8_4:11622358-11622377 | None:intergenic | 50.0% | |
| GGATGCAAATCAGTTGCTGC+TGG | + | chr8_4:11622403-11622422 | Msa1313580:CDS | 50.0% | |
| ! | GCAAATGGGGAGCGTGATAT+TGG | + | chr8_4:11622809-11622828 | Msa1313580:CDS | 50.0% |
| GCAAGGGCAATGGAGAAAGT+TGG | + | chr8_4:11622842-11622861 | Msa1313580:CDS | 50.0% | |
| GGCAATGGAGAAAGTTGGGA+AGG | + | chr8_4:11622847-11622866 | Msa1313580:CDS | 50.0% | |
| TCTTCCGCAACAACTAGGAG+TGG | - | chr8_4:11623744-11623763 | None:intergenic | 50.0% | |
| CGATGTTACACGAGGGTAAG+TGG | + | chr8_4:11624067-11624086 | Msa1313580:intron | 50.0% | |
| ACAAGCCATATCCCACCAAG+TGG | + | chr8_4:11624366-11624385 | Msa1313580:intron | 50.0% | |
| CAAGCCATATCCCACCAAGT+GGG | + | chr8_4:11624367-11624386 | Msa1313580:intron | 50.0% | |
| AAGCCATATCCCACCAAGTG+GGG | + | chr8_4:11624368-11624387 | Msa1313580:intron | 50.0% | |
| TGGGGACAATGCAAGCTACT+TGG | + | chr8_4:11624803-11624822 | Msa1313580:intron | 50.0% | |
| !!! | CTCCTGGTTTTGGGGACAAT+AGG | + | chr8_4:11624919-11624938 | Msa1313580:CDS | 50.0% |
| CTCCTATTGTCCCCAAAACC+AGG | - | chr8_4:11624924-11624943 | None:intergenic | 50.0% | |
| TGCGATTCTTACTGGAGGAG+AGG | + | chr8_4:11624962-11624981 | Msa1313580:CDS | 50.0% | |
| CAGGTCATCACAGAAGAACG+CGG | + | chr8_4:11625068-11625087 | Msa1313580:intron | 50.0% | |
| GCATACCTCTCGACAAAGTC+CGG | + | chr8_4:11625090-11625109 | Msa1313580:CDS | 50.0% | |
| ! | GGCACAGCAAAAAAGGCATG+TGG | + | chr8_4:11625125-11625144 | Msa1313580:intron | 50.0% |
| GAACGGCTGTCAAAACTCTC+CGG | + | chr8_4:11625596-11625615 | Msa1313580:CDS | 50.0% | |
| TTTGAAGACAGCAACACCGC+CGG | - | chr8_4:11625618-11625637 | None:intergenic | 50.0% | |
| GTGCTAGTGAGGCAGAAGTT+GGG | + | chr8_4:11625738-11625757 | Msa1313580:CDS | 50.0% | |
| TGCTAGTGAGGCAGAAGTTG+GGG | + | chr8_4:11625739-11625758 | Msa1313580:CDS | 50.0% | |
| AAATGCCACTAGAGCAGCTG+TGG | + | chr8_4:11625790-11625809 | Msa1313580:CDS | 50.0% | |
| ! | GACAACCGAGGCATCTATTG+TGG | + | chr8_4:11626813-11626832 | Msa1313580:CDS | 50.0% |
| TCCATATCTGGCACCCTTTG+GGG | - | chr8_4:11626865-11626884 | None:intergenic | 50.0% | |
| CATCCATATCTGGCACCCTT+TGG | - | chr8_4:11626867-11626886 | None:intergenic | 50.0% | |
| ! | GCTCGTGCTGCTATGCTTCA+AGG | + | chr8_4:11621053-11621072 | Msa1313580:CDS | 55.0% |
| ACCGTCTCCTGCAGTACTGT+TGG | - | chr8_4:11621960-11621979 | None:intergenic | 55.0% | |
| ATGGCCAACATGCAATGGGG+TGG | - | chr8_4:11622256-11622275 | None:intergenic | 55.0% | |
| CAAGCATCATGCCGGGCTTA+AGG | + | chr8_4:11623800-11623819 | Msa1313580:CDS | 55.0% | |
| CATGCCGGGCTTAAGGTAAC+AGG | + | chr8_4:11623807-11623826 | Msa1313580:intron | 55.0% | |
| CATATCCCACCAAGTGGGGT+CGG | + | chr8_4:11624372-11624391 | Msa1313580:intron | 55.0% | |
| ! | TATATCGTGCCGACCCCACT+TGG | - | chr8_4:11624384-11624403 | None:intergenic | 55.0% |
| AAAGTCCGGCCCGAAATGCT+TGG | + | chr8_4:11625104-11625123 | Msa1313580:CDS | 55.0% | |
| !! | ACAGGTTGGTGGTGCTAGTG+AGG | + | chr8_4:11625727-11625746 | Msa1313580:intron | 55.0% |
| GGTGCTAGTGAGGCAGAAGT+TGG | + | chr8_4:11625737-11625756 | Msa1313580:CDS | 55.0% | |
| GTGAGGCAGAAGTTGGGGAA+AGG | + | chr8_4:11625744-11625763 | Msa1313580:CDS | 55.0% | |
| ACTAGAGCAGCTGTGGAGGA+GGG | + | chr8_4:11625797-11625816 | Msa1313580:CDS | 55.0% | |
| !! | GTGGAGGAGGGTATTGTTCC+AGG | + | chr8_4:11625809-11625828 | Msa1313580:CDS | 55.0% |
| ! | CAGCTTTGGTAGATGCTGCC+AGG | + | chr8_4:11626682-11626701 | Msa1313580:CDS | 55.0% |
| GTTGCTACTGACGACAACCG+AGG | + | chr8_4:11626801-11626820 | Msa1313580:CDS | 55.0% | |
| ! | ATATCTGGCACCCTTTGGGG+AGG | - | chr8_4:11626862-11626881 | None:intergenic | 55.0% |
| !! | TCCCCAAAGGGTGCCAGATA+TGG | + | chr8_4:11626861-11626880 | Msa1313580:CDS | 55.0% |
| ! | AGTCGTGCGAGGTGTCTGTC+TGG | - | chr8_4:11621349-11621368 | None:intergenic | 60.0% |
| ! | CGACCCCACTTGGTGGGATA+TGG | - | chr8_4:11624374-11624393 | None:intergenic | 60.0% |
| CTGTGCCAAGCATTTCGGGC+CGG | - | chr8_4:11625112-11625131 | None:intergenic | 60.0% | |
| CGGCTGTCAAAACTCTCCGG+CGG | + | chr8_4:11625599-11625618 | Msa1313580:CDS | 60.0% | |
| TGCCACTAGAGCAGCTGTGG+AGG | + | chr8_4:11625793-11625812 | Msa1313580:CDS | 60.0% | |
| CTCCTCCACAGCTGCTCTAG+TGG | - | chr8_4:11625798-11625817 | None:intergenic | 60.0% | |
| CACTAGAGCAGCTGTGGAGG+AGG | + | chr8_4:11625796-11625815 | Msa1313580:CDS | 60.0% | |
| ! | TCGTGCCGACCCCACTTGGT+GGG | - | chr8_4:11624380-11624399 | None:intergenic | 65.0% |
| ! | ATCGTGCCGACCCCACTTGG+TGG | - | chr8_4:11624381-11624400 | None:intergenic | 65.0% |
| TCGGGCCGGACTTTGTCGAG+AGG | - | chr8_4:11625098-11625117 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 11620546 | 11627394 | 11620546 | ID=Msa1313580;Name=Msa1313580 |
| chr8_4 | mRNA | 11620546 | 11627394 | 11620546 | ID=Msa1313580-mRNA-1;Parent=Msa1313580;Name=Msa1313580-mRNA-1;_AED=0.13;_eAED=0.13;_QI=202|1|1|1|1|1|17|494|576 |
| chr8_4 | exon | 11620546 | 11620813 | 11620546 | ID=Msa1313580-mRNA-1:exon:4379;Parent=Msa1313580-mRNA-1 |
| chr8_4 | exon | 11620990 | 11621121 | 11620990 | ID=Msa1313580-mRNA-1:exon:4380;Parent=Msa1313580-mRNA-1 |
| chr8_4 | exon | 11621818 | 11621977 | 11621818 | ID=Msa1313580-mRNA-1:exon:4381;Parent=Msa1313580-mRNA-1 |
| chr8_4 | exon | 11622359 | 11622534 | 11622359 | ID=Msa1313580-mRNA-1:exon:4382;Parent=Msa1313580-mRNA-1 |
| chr8_4 | exon | 11622794 | 11622889 | 11622794 | ID=Msa1313580-mRNA-1:exon:4383;Parent=Msa1313580-mRNA-1 |
| chr8_4 | exon | 11622972 | 11623076 | 11622972 | ID=Msa1313580-mRNA-1:exon:4384;Parent=Msa1313580-mRNA-1 |
| chr8_4 | exon | 11623556 | 11623642 | 11623556 | ID=Msa1313580-mRNA-1:exon:4385;Parent=Msa1313580-mRNA-1 |
| chr8_4 | exon | 11623732 | 11623821 | 11623732 | ID=Msa1313580-mRNA-1:exon:4386;Parent=Msa1313580-mRNA-1 |
| chr8_4 | exon | 11624903 | 11624983 | 11624903 | ID=Msa1313580-mRNA-1:exon:4387;Parent=Msa1313580-mRNA-1 |
| chr8_4 | exon | 11625071 | 11625139 | 11625071 | ID=Msa1313580-mRNA-1:exon:4388;Parent=Msa1313580-mRNA-1 |
| chr8_4 | exon | 11625217 | 11625294 | 11625217 | ID=Msa1313580-mRNA-1:exon:4389;Parent=Msa1313580-mRNA-1 |
| chr8_4 | exon | 11625542 | 11625637 | 11625542 | ID=Msa1313580-mRNA-1:exon:4390;Parent=Msa1313580-mRNA-1 |
| chr8_4 | exon | 11625731 | 11625830 | 11625731 | ID=Msa1313580-mRNA-1:exon:4391;Parent=Msa1313580-mRNA-1 |
| chr8_4 | exon | 11626139 | 11626242 | 11626139 | ID=Msa1313580-mRNA-1:exon:4392;Parent=Msa1313580-mRNA-1 |
| chr8_4 | exon | 11626356 | 11626461 | 11626356 | ID=Msa1313580-mRNA-1:exon:4393;Parent=Msa1313580-mRNA-1 |
| chr8_4 | exon | 11626625 | 11626703 | 11626625 | ID=Msa1313580-mRNA-1:exon:4394;Parent=Msa1313580-mRNA-1 |
| chr8_4 | exon | 11626795 | 11627394 | 11626795 | ID=Msa1313580-mRNA-1:exon:4395;Parent=Msa1313580-mRNA-1 |
| chr8_4 | five_prime_UTR | 11620546 | 11620747 | 11620546 | ID=Msa1313580-mRNA-1:five_prime_utr;Parent=Msa1313580-mRNA-1 |
| chr8_4 | CDS | 11620748 | 11620813 | 11620748 | ID=Msa1313580-mRNA-1:cds;Parent=Msa1313580-mRNA-1 |
| chr8_4 | CDS | 11620990 | 11621121 | 11620990 | ID=Msa1313580-mRNA-1:cds;Parent=Msa1313580-mRNA-1 |
| chr8_4 | CDS | 11621818 | 11621977 | 11621818 | ID=Msa1313580-mRNA-1:cds;Parent=Msa1313580-mRNA-1 |
| chr8_4 | CDS | 11622359 | 11622534 | 11622359 | ID=Msa1313580-mRNA-1:cds;Parent=Msa1313580-mRNA-1 |
| chr8_4 | CDS | 11622794 | 11622889 | 11622794 | ID=Msa1313580-mRNA-1:cds;Parent=Msa1313580-mRNA-1 |
| chr8_4 | CDS | 11622972 | 11623076 | 11622972 | ID=Msa1313580-mRNA-1:cds;Parent=Msa1313580-mRNA-1 |
| chr8_4 | CDS | 11623556 | 11623642 | 11623556 | ID=Msa1313580-mRNA-1:cds;Parent=Msa1313580-mRNA-1 |
| chr8_4 | CDS | 11623732 | 11623821 | 11623732 | ID=Msa1313580-mRNA-1:cds;Parent=Msa1313580-mRNA-1 |
| chr8_4 | CDS | 11624903 | 11624983 | 11624903 | ID=Msa1313580-mRNA-1:cds;Parent=Msa1313580-mRNA-1 |
| chr8_4 | CDS | 11625071 | 11625139 | 11625071 | ID=Msa1313580-mRNA-1:cds;Parent=Msa1313580-mRNA-1 |
| chr8_4 | CDS | 11625217 | 11625294 | 11625217 | ID=Msa1313580-mRNA-1:cds;Parent=Msa1313580-mRNA-1 |
| chr8_4 | CDS | 11625542 | 11625637 | 11625542 | ID=Msa1313580-mRNA-1:cds;Parent=Msa1313580-mRNA-1 |
| chr8_4 | CDS | 11625731 | 11625830 | 11625731 | ID=Msa1313580-mRNA-1:cds;Parent=Msa1313580-mRNA-1 |
| chr8_4 | CDS | 11626139 | 11626242 | 11626139 | ID=Msa1313580-mRNA-1:cds;Parent=Msa1313580-mRNA-1 |
| chr8_4 | CDS | 11626356 | 11626461 | 11626356 | ID=Msa1313580-mRNA-1:cds;Parent=Msa1313580-mRNA-1 |
| chr8_4 | CDS | 11626625 | 11626703 | 11626625 | ID=Msa1313580-mRNA-1:cds;Parent=Msa1313580-mRNA-1 |
| chr8_4 | CDS | 11626795 | 11626900 | 11626795 | ID=Msa1313580-mRNA-1:cds;Parent=Msa1313580-mRNA-1 |
| chr8_4 | three_prime_UTR | 11626901 | 11627394 | 11626901 | ID=Msa1313580-mRNA-1:three_prime_utr;Parent=Msa1313580-mRNA-1 |
| Gene Sequence |
| Protein sequence |
