Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233030 | XP_003627097.1 | 96.577 | 409 | 3 | 1 | 6 | 414 | 179 | 576 | 0.0 | 794 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233030 | sp|Q93ZM7|CH60C_ARATH | 78.870 | 407 | 73 | 3 | 6 | 412 | 177 | 570 | 0.0 | 652 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233030 | G7LHF7 | 96.577 | 409 | 3 | 1 | 6 | 414 | 179 | 576 | 0.0 | 794 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0032430 | Msa1233030 | 0.812865 | 3.418751e-51 | -8.615850e-47 |
| Msa0040690 | Msa1233030 | 0.803652 | 3.147337e-49 | -8.615850e-47 |
| Msa0094470 | Msa1233030 | 0.806001 | 1.016799e-49 | -8.615850e-47 |
| Msa0099220 | Msa1233030 | 0.801489 | 8.790519e-49 | -8.615850e-47 |
| Msa0782950 | Msa1233030 | 0.802496 | 5.456655e-49 | -8.615850e-47 |
| Msa0160550 | Msa1233030 | 0.802490 | 5.472700e-49 | -8.615850e-47 |
| Msa0172070 | Msa1233030 | 0.817059 | 4.013223e-52 | -8.615850e-47 |
| Msa1233030 | Msa1313580 | 0.852297 | 5.063515e-61 | -8.615850e-47 |
| Msa1233030 | Msa1374120 | 0.801304 | 9.593285e-49 | -8.615850e-47 |
| Msa1233030 | Msa1394290 | 0.815400 | 9.427339e-52 | -8.615850e-47 |
| Msa1104140 | Msa1233030 | 0.821509 | 3.888546e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233030 | MtrunA17_Chr8g0342341 | 96.577 | 409 | 3 | 1 | 6 | 414 | 179 | 576 | 0.0 | 794 |
| Msa1233030 | MtrunA17_Chr1g0196761 | 68.204 | 412 | 119 | 2 | 3 | 414 | 175 | 574 | 0.0 | 561 |
| Msa1233030 | MtrunA17_Chr1g0196751 | 68.421 | 399 | 114 | 2 | 3 | 401 | 175 | 561 | 0.0 | 548 |
| Msa1233030 | MtrunA17_Chr1g0152151 | 43.171 | 410 | 215 | 3 | 6 | 413 | 192 | 585 | 7.15e-108 | 330 |
| Msa1233030 | MtrunA17_Chr1g0152141 | 43.171 | 410 | 215 | 3 | 6 | 413 | 192 | 585 | 7.31e-108 | 330 |
| Msa1233030 | MtrunA17_Chr4g0028601 | 42.607 | 399 | 211 | 4 | 6 | 402 | 192 | 574 | 3.05e-99 | 307 |
| Msa1233030 | MtrunA17_Chr5g0421251 | 40.950 | 337 | 186 | 2 | 6 | 340 | 182 | 507 | 1.87e-84 | 267 |
| Msa1233030 | MtrunA17_Chr4g0043731 | 36.881 | 404 | 238 | 4 | 6 | 407 | 184 | 572 | 1.09e-83 | 267 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1233030 | AT3G13860.1 | 78.870 | 407 | 73 | 3 | 6 | 412 | 177 | 570 | 0.0 | 652 |
| Msa1233030 | AT3G23990.1 | 71.173 | 392 | 102 | 1 | 3 | 394 | 174 | 554 | 0.0 | 555 |
| Msa1233030 | AT2G33210.1 | 69.409 | 389 | 108 | 1 | 6 | 394 | 178 | 555 | 0.0 | 537 |
| Msa1233030 | AT2G33210.2 | 68.638 | 389 | 106 | 2 | 6 | 394 | 178 | 550 | 0.0 | 522 |
| Msa1233030 | AT3G13470.1 | 43.415 | 410 | 214 | 4 | 6 | 413 | 197 | 590 | 6.86e-105 | 322 |
| Msa1233030 | AT1G55490.5 | 42.029 | 414 | 219 | 4 | 6 | 414 | 201 | 598 | 1.51e-103 | 319 |
| Msa1233030 | AT1G55490.1 | 42.029 | 414 | 219 | 4 | 6 | 414 | 201 | 598 | 1.51e-103 | 319 |
| Msa1233030 | AT1G55490.3 | 42.029 | 414 | 219 | 4 | 6 | 414 | 201 | 598 | 1.51e-103 | 319 |
| Msa1233030 | AT1G55490.4 | 42.029 | 414 | 219 | 4 | 6 | 414 | 201 | 598 | 1.51e-103 | 319 |
| Msa1233030 | AT1G55490.2 | 42.029 | 414 | 219 | 4 | 6 | 414 | 201 | 598 | 1.51e-103 | 319 |
| Msa1233030 | AT5G56500.2 | 42.822 | 411 | 221 | 4 | 6 | 414 | 197 | 595 | 3.22e-103 | 318 |
| Msa1233030 | AT5G56500.1 | 42.822 | 411 | 221 | 4 | 6 | 414 | 197 | 595 | 3.22e-103 | 318 |
| Msa1233030 | AT1G26230.3 | 40.602 | 399 | 224 | 3 | 6 | 402 | 125 | 512 | 1.01e-97 | 303 |
| Msa1233030 | AT1G26230.4 | 40.602 | 399 | 224 | 3 | 6 | 402 | 133 | 520 | 1.34e-97 | 303 |
| Msa1233030 | AT1G26230.1 | 40.602 | 399 | 224 | 3 | 6 | 402 | 185 | 572 | 4.55e-97 | 303 |
| Msa1233030 | AT2G28000.1 | 42.199 | 391 | 212 | 3 | 6 | 394 | 191 | 569 | 1.43e-96 | 301 |
| Msa1233030 | AT1G26230.2 | 40.476 | 336 | 187 | 3 | 6 | 339 | 185 | 509 | 1.57e-80 | 258 |
| Msa1233030 | AT5G18820.2 | 35.468 | 406 | 245 | 4 | 6 | 407 | 72 | 464 | 1.21e-76 | 246 |
| Msa1233030 | AT5G18820.1 | 35.468 | 406 | 245 | 4 | 6 | 407 | 178 | 570 | 2.47e-75 | 245 |
| Msa1233030 | AT1G26230.5 | 39.777 | 269 | 151 | 1 | 6 | 274 | 185 | 442 | 3.07e-66 | 219 |
| Msa1233030 | AT5G18820.3 | 32.114 | 246 | 156 | 1 | 6 | 251 | 178 | 412 | 1.42e-37 | 142 |
Find 111 sgRNAs with CRISPR-Local
Find 281 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTGCTGTGCCAAGCATTTC+GGG | 0.206775 | 8_2:+9666124 | None:intergenic |
| GCTATAAAAGCTCCTGGTTT+TGG | 0.212262 | 8_2:-9666328 | Msa1233030:CDS |
| TACTTGTGTTACAGAAATTA+TGG | 0.232092 | 8_2:+9664112 | None:intergenic |
| GATGATCTTGCGATTCTTAC+TGG | 0.243237 | 8_2:-9666283 | Msa1233030:CDS |
| GAGCCAACATAACTATTCTT+TGG | 0.285022 | 8_2:-9666086 | Msa1233030:intron |
| GCTGTTCTAACAACTTTAAC+AGG | 0.285162 | 8_2:+9664574 | None:intergenic |
| CAAATTCCTATTTCATGGTT+TGG | 0.285767 | 8_2:-9663952 | Msa1233030:three_prime_UTR |
| ATACATCCAAACCATGAAAT+AGG | 0.296604 | 8_2:+9663946 | None:intergenic |
| ATCCATATCTGGCACCCTTT+GGG | 0.321185 | 8_2:+9664374 | None:intergenic |
| GCAAATGGGGAGCGTGATAT+TGG | 0.324943 | 8_2:-9668418 | Msa1233030:CDS |
| TAAAGCAAATTCCTATTTCA+TGG | 0.331639 | 8_2:-9663957 | Msa1233030:three_prime_UTR |
| TTCTGATCAGTAATAAAATA+AGG | 0.341376 | 8_2:+9668186 | None:intergenic |
| CCAACAATTTGCTGTGAACT+AGG | 0.341402 | 8_2:+9664837 | None:intergenic |
| GGTGCCAGATATGGATGATT+TGG | 0.346566 | 8_2:-9664367 | Msa1233030:CDS |
| AACAGGAACCTATGTTGATA+TGG | 0.352995 | 8_2:-9664617 | Msa1233030:intron |
| CATCCATATCTGGCACCCTT+TGG | 0.368091 | 8_2:+9664373 | None:intergenic |
| CAAGCATCATGCCGGGCTTA+AGG | 0.371358 | 8_2:-9667427 | Msa1233030:intron |
| TCCCCAAAGGGTGCCAGATA+TGG | 0.373756 | 8_2:-9664376 | Msa1233030:CDS |
| TTGTCATGGATGAGGATAAA+GGG | 0.383754 | 8_2:+9667659 | None:intergenic |
| TAGTCCAAATCATCCATATC+TGG | 0.396497 | 8_2:+9664363 | None:intergenic |
| AAGTCGGGGAAAGGAAAGAT+AGG | 0.400792 | 8_2:-9665484 | Msa1233030:CDS |
| GTGGAGGAGGGTATTGTTCC+AGG | 0.402426 | 8_2:-9665428 | Msa1233030:intron |
| ACAGCTCCAATACTTTCAAC+AGG | 0.404751 | 8_2:+9667615 | None:intergenic |
| GTTGGTACTATATCTGCAAA+TGG | 0.407082 | 8_2:-9668433 | Msa1233030:CDS |
| CCTAGTTCACAGCAAATTGT+TGG | 0.426957 | 8_2:-9664837 | Msa1233030:CDS |
| CTTGTCATGGATGAGGATAA+AGG | 0.431846 | 8_2:+9667658 | None:intergenic |
| CTTTCATCGTTTGTTGAAGC+AGG | 0.431858 | 8_2:+9664336 | None:intergenic |
| AATGAGTTGGAAGTAGTAGA+AGG | 0.432686 | 8_2:-9668237 | Msa1233030:CDS |
| TTGGTACTATATCTGCAAAT+GGG | 0.441996 | 8_2:-9668432 | Msa1233030:CDS |
| TTCAAGTTATCATAATCAAT+AGG | 0.443023 | 8_2:-9664183 | Msa1233030:three_prime_UTR |
| TAAAGTTGTTAGAACAGCTT+TGG | 0.451306 | 8_2:-9664569 | Msa1233030:CDS |
| ATGGAGAAAGTTGGGAAGGA+AGG | 0.451870 | 8_2:-9668376 | Msa1233030:CDS |
| AGCCTACGATTCAATGTCAT+AGG | 0.456235 | 8_2:-9664222 | Msa1233030:three_prime_UTR |
| GGGTTCCCTGTTGAAAGTAT+TGG | 0.460700 | 8_2:-9667621 | Msa1233030:CDS |
| GCATACCTCTCGACAAAGTC+CGG | 0.461524 | 8_2:-9666147 | Msa1233030:CDS |
| AAGCTGCTAAAGTTTAAACT+TGG | 0.470129 | 8_2:-9664280 | Msa1233030:three_prime_UTR |
| TATACAATAGCTTCAAATGC+TGG | 0.470880 | 8_2:-9664872 | Msa1233030:CDS |
| CTCCTCCACAGCTGCTCTAG+TGG | 0.472284 | 8_2:+9665442 | None:intergenic |
| GTGCTAGTGAGGCAGAAGTC+GGG | 0.477145 | 8_2:-9665499 | Msa1233030:CDS |
| CACTAGAGCAGCTGTGGAGG+AGG | 0.478283 | 8_2:-9665441 | Msa1233030:CDS |
| CTTATATGCTAGCAAAGTCT+TGG | 0.482023 | 8_2:-9665082 | Msa1233030:CDS |
| CAAGGGCAATGGAGAAAGTT+GGG | 0.484207 | 8_2:-9668384 | Msa1233030:CDS |
| GCAAGGGCAATGGAGAAAGT+TGG | 0.486466 | 8_2:-9668385 | Msa1233030:CDS |
| AAAGTCCGGCCCGAAATGCT+TGG | 0.503924 | 8_2:-9666133 | Msa1233030:CDS |
| AGCTGCTAAAGTTTAAACTT+GGG | 0.504128 | 8_2:-9664279 | Msa1233030:three_prime_UTR |
| GTTTGTGCTATAAAAGCTCC+TGG | 0.509754 | 8_2:-9666334 | Msa1233030:CDS |
| GAACCAAAGAATAGTTATGT+TGG | 0.517067 | 8_2:+9666083 | None:intergenic |
| TATCGAAGAGAGATGTGTCC+AGG | 0.518182 | 8_2:-9665964 | Msa1233030:intron |
| CTATTGTTCTACATGGTGGC+GGG | 0.518662 | 8_2:-9665998 | Msa1233030:CDS |
| CTGTGCCAAGCATTTCGGGC+CGG | 0.519343 | 8_2:+9666128 | None:intergenic |
| GGTGCTAGTGAGGCAGAAGT+CGG | 0.528858 | 8_2:-9665500 | Msa1233030:CDS |
| CTCCTATTGTCCCCAAAACC+AGG | 0.529263 | 8_2:+9666316 | None:intergenic |
| CAACATCTTCCGCAACAACT+AGG | 0.529271 | 8_2:+9667481 | None:intergenic |
| CAGCTTTGGTAGATGCTGCC+AGG | 0.535337 | 8_2:-9664555 | Msa1233030:intron |
| ATACTCAACAAGCATCATGC+CGG | 0.539543 | 8_2:-9667435 | Msa1233030:CDS |
| TCCATATCTGGCACCCTTTG+GGG | 0.540298 | 8_2:+9664375 | None:intergenic |
| TGAAATGAGATAGAATAGAA+TGG | 0.541251 | 8_2:+9663881 | None:intergenic |
| TTTGAAGCTATTGTATATGT+TGG | 0.547605 | 8_2:+9664878 | None:intergenic |
| TATGTTGATATGGTGAAGGC+TGG | 0.547684 | 8_2:-9664607 | Msa1233030:CDS |
| TACTCAACAAGCATCATGCC+GGG | 0.550666 | 8_2:-9667434 | Msa1233030:CDS |
| CAACAATTTGCTGTGAACTA+GGG | 0.551192 | 8_2:+9664838 | None:intergenic |
| ATATCTGGCACCCTTTGGGG+AGG | 0.553447 | 8_2:+9664378 | None:intergenic |
| ATTCTCCACAATAGATGCCT+CGG | 0.555291 | 8_2:+9664419 | None:intergenic |
| GAACGGCTGTCAAAACTCTC+CGG | 0.556167 | 8_2:-9665641 | Msa1233030:CDS |
| GATTATTCAGAATGCACTCA+AGG | 0.557505 | 8_2:-9665016 | Msa1233030:intron |
| GAACACTATGGATAATGAGT+TGG | 0.558978 | 8_2:-9668250 | Msa1233030:CDS |
| CAAGAATAAACCTCCCCAAA+GGG | 0.559230 | 8_2:-9664388 | Msa1233030:CDS |
| TCCCTATGACATTGAATCGT+AGG | 0.565565 | 8_2:+9664220 | None:intergenic |
| GACAACCGAGGCATCTATTG+TGG | 0.569813 | 8_2:-9664424 | Msa1233030:CDS |
| ACTATTGTTCTACATGGTGG+CGG | 0.578772 | 8_2:-9665999 | Msa1233030:CDS |
| CTGCTAAAGTTTAAACTTGG+GGG | 0.580607 | 8_2:-9664277 | Msa1233030:three_prime_UTR |
| TAAACCTGTTACCTTAAGCC+CGG | 0.582121 | 8_2:+9667416 | None:intergenic |
| TGACAAGAAAATTTCAGACA+TGG | 0.583948 | 8_2:-9667642 | Msa1233030:CDS |
| AGCCTTCACCATATCAACAT+AGG | 0.586703 | 8_2:+9664609 | None:intergenic |
| GACAAGAAAATTTCAGACAT+GGG | 0.587795 | 8_2:-9667641 | Msa1233030:CDS |
| TGCCACTAGAGCAGCTGTGG+AGG | 0.588294 | 8_2:-9665444 | Msa1233030:CDS |
| TGCGATTCTTACTGGAGGAG+AGG | 0.588409 | 8_2:-9666275 | Msa1233030:intron |
| GCTGCTAAAGTTTAAACTTG+GGG | 0.588647 | 8_2:-9664278 | Msa1233030:three_prime_UTR |
| GTGAGGCAGAAGTCGGGGAA+AGG | 0.588879 | 8_2:-9665493 | Msa1233030:CDS |
| ACAGGTTGGTGGTGCTAGTG+AGG | 0.591068 | 8_2:-9665510 | Msa1233030:intron |
| GCCTACGATTCAATGTCATA+GGG | 0.594245 | 8_2:-9664221 | Msa1233030:three_prime_UTR |
| TGCTAAAGTTTAAACTTGGG+GGG | 0.599616 | 8_2:-9664276 | Msa1233030:three_prime_UTR |
| AGATGTTGACAGTGATGCAT+TGG | 0.605442 | 8_2:-9667466 | Msa1233030:CDS |
| GGCAATGGAGAAAGTTGGGA+AGG | 0.606230 | 8_2:-9668380 | Msa1233030:CDS |
| AGAATTGATAGCAAGGGCAA+TGG | 0.608252 | 8_2:-9668395 | Msa1233030:CDS |
| AAATGCCACTAGAGCAGCTG+TGG | 0.609502 | 8_2:-9665447 | Msa1233030:CDS |
| TGTCATGGATGAGGATAAAG+GGG | 0.609505 | 8_2:+9667660 | None:intergenic |
| TATTGTTCTACATGGTGGCG+GGG | 0.610283 | 8_2:-9665997 | Msa1233030:CDS |
| ACAAGAATAAACCTCCCCAA+AGG | 0.612403 | 8_2:-9664389 | Msa1233030:CDS |
| TTACAGAAATTATGGTACAA+AGG | 0.613804 | 8_2:+9664120 | None:intergenic |
| AATGGACTAGAGCAGCGTAA+CGG | 0.614299 | 8_2:-9664026 | Msa1233030:three_prime_UTR |
| TGCTAGTGAGGCAGAAGTCG+GGG | 0.614857 | 8_2:-9665498 | Msa1233030:CDS |
| TCTAAACATCTACAGGTTGG+TGG | 0.618531 | 8_2:-9665521 | Msa1233030:intron |
| ACTAGAGCAGCTGTGGAGGA+GGG | 0.618745 | 8_2:-9665440 | Msa1233030:CDS |
| AAGACCACTCCTAGTTGTTG+CGG | 0.619692 | 8_2:-9667490 | Msa1233030:CDS |
| TTTGAAGACAGCAACACCAC+CGG | 0.621304 | 8_2:+9665622 | None:intergenic |
| TATTGGAGAATTGATAGCAA+GGG | 0.622634 | 8_2:-9668401 | Msa1233030:CDS |
| TGGTACTATATCTGCAAATG+GGG | 0.624150 | 8_2:-9668431 | Msa1233030:CDS |
| AGTATTGGAGCTGTCAGTAA+CGG | 0.624634 | 8_2:-9667606 | Msa1233030:intron |
| AGTCGGGGAAAGGAAAGATA+GGG | 0.638075 | 8_2:-9665483 | Msa1233030:CDS |
| ATATTGGAGAATTGATAGCA+AGG | 0.642106 | 8_2:-9668402 | Msa1233030:CDS |
| GAAGGAATGAAGTTGTCTAG+AGG | 0.642343 | 8_2:-9668219 | Msa1233030:CDS |
| CGGCTGTCAAAACTCTCCGG+TGG | 0.643516 | 8_2:-9665638 | Msa1233030:CDS |
| GTTGCTACTGACGACAACCG+AGG | 0.650081 | 8_2:-9664436 | Msa1233030:CDS |
| AACCTATGTTGATATGGTGA+AGG | 0.655556 | 8_2:-9664611 | Msa1233030:CDS |
| GATGACACTATTGTTCTACA+TGG | 0.655586 | 8_2:-9666005 | Msa1233030:CDS |
| CAGCTCCAATACTTTCAACA+GGG | 0.661874 | 8_2:+9667616 | None:intergenic |
| TCTTCCGCAACAACTAGGAG+TGG | 0.668081 | 8_2:+9667486 | None:intergenic |
| GATCTTGCGATTCTTACTGG+AGG | 0.688070 | 8_2:-9666280 | Msa1233030:CDS |
| CAGGTCATCACAGAAGAACG+CGG | 0.710751 | 8_2:-9666169 | Msa1233030:CDS |
| GACACTATTGTTCTACATGG+TGG | 0.733578 | 8_2:-9666002 | Msa1233030:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATAAGAGAATATTTATT+TGG | + | chr8_2:9665689-9665708 | None:intergenic | 10.0% |
| !! | ATAAATATTCTCTTATAAAT+AGG | - | chr8_2:9665690-9665709 | Msa1233030:CDS | 10.0% |
| !!! | ATAAGTTTTATAAACTATTT+CGG | + | chr8_2:9665854-9665873 | None:intergenic | 10.0% |
| !! | AAAACTGATTAATTAAATAT+AGG | + | chr8_2:9666171-9666190 | None:intergenic | 10.0% |
| !!! | TAAATTCTCATTATATTTTT+TGG | - | chr8_2:9668414-9668433 | Msa1233030:CDS | 10.0% |
| !!! | AAATTCTCATTATATTTTTT+GGG | - | chr8_2:9668415-9668434 | Msa1233030:CDS | 10.0% |
| !!! | ATTGATTTTATATGACTAAT+AGG | - | chr8_2:9663955-9663974 | Msa1233030:three_prime_UTR | 15.0% |
| !! | TGACATCATATATAAATAAA+AGG | - | chr8_2:9664662-9664681 | Msa1233030:intron | 15.0% |
| !! | GTTTACATCATATATAATAA+AGG | - | chr8_2:9664698-9664717 | Msa1233030:intron | 15.0% |
| !!! | ATATCATTAGTTATTTCTAA+AGG | + | chr8_2:9665762-9665781 | None:intergenic | 15.0% |
| !!! | GATTTTAATGAAAATATTAC+TGG | - | chr8_2:9666595-9666614 | Msa1233030:intron | 15.0% |
| !! | TTATACTTGTATTAAAAAGA+AGG | - | chr8_2:9667741-9667760 | Msa1233030:intron | 15.0% |
| !!! | ATTTTATATGACTAATAGGT+TGG | - | chr8_2:9663959-9663978 | Msa1233030:three_prime_UTR | 20.0% |
| !!! | TCTAAGATTTTAATGTTTTC+AGG | - | chr8_2:9664133-9664152 | Msa1233030:three_prime_UTR | 20.0% |
| !! | TTCTGATCAGTAATAAAATA+AGG | + | chr8_2:9664227-9664246 | None:intergenic | 20.0% |
| !! | TTATAAGAAGAAAAACAACA+GGG | + | chr8_2:9664471-9664490 | None:intergenic | 20.0% |
| !! | ATTATAAGAAGAAAAACAAC+AGG | + | chr8_2:9664472-9664491 | None:intergenic | 20.0% |
| !! | ATATATAATAAAGGTGATGT+CGG | - | chr8_2:9664707-9664726 | Msa1233030:intron | 20.0% |
| !! | AATAAAATCTTGAATGCAAT+TGG | + | chr8_2:9665496-9665515 | None:intergenic | 20.0% |
| !!! | AGTTATTTCTAAAGGTTTTA+TGG | + | chr8_2:9665754-9665773 | None:intergenic | 20.0% |
| !!! | TTTCAAGTTTCTTGTATTTT+AGG | - | chr8_2:9666054-9666073 | Msa1233030:intron | 20.0% |
| !!! | GATTTTTTGTAACACATAAA+AGG | + | chr8_2:9666352-9666371 | None:intergenic | 20.0% |
| !!! | AAATTTAGTTCTTCCAAAAA+TGG | + | chr8_2:9666481-9666500 | None:intergenic | 20.0% |
| !! | TACATTGAAATAAAACCATT+TGG | + | chr8_2:9666555-9666574 | None:intergenic | 20.0% |
| !!! | AAAATATCATTTTGTAGTTG+AGG | - | chr8_2:9666698-9666717 | Msa1233030:intron | 20.0% |
| !!! | AAATATCATTTTGTAGTTGA+GGG | - | chr8_2:9666699-9666718 | Msa1233030:intron | 20.0% |
| !!! | TTTTTATTCATTACCTTACA+TGG | - | chr8_2:9666858-9666877 | Msa1233030:intron | 20.0% |
| !!! | TGTATGAAATTGTTTTATCA+AGG | - | chr8_2:9667290-9667309 | Msa1233030:intron | 20.0% |
| !!! | AGAAATAAAGAAAATTTTCC+AGG | + | chr8_2:9667482-9667501 | None:intergenic | 20.0% |
| !! | TAATGTATATTACTTGTCAT+AGG | - | chr8_2:9667507-9667526 | Msa1233030:intron | 20.0% |
| !!! | GAACAAGATGATTTTAATTT+GGG | - | chr8_2:9667595-9667614 | Msa1233030:intron | 20.0% |
| !! | ATATTTATTCTCAAATGTCA+AGG | + | chr8_2:9667713-9667732 | None:intergenic | 20.0% |
| !!! | TTCAAGTTATCATAATCAAT+AGG | - | chr8_2:9668227-9668246 | Msa1233030:CDS | 20.0% |
| !! | CGCTAATATTTAAAAATGAA+TGG | - | chr8_2:9668356-9668375 | Msa1233030:intron | 20.0% |
| !! | ATATTTAAAAATGAATGGAG+CGG | - | chr8_2:9668361-9668380 | Msa1233030:CDS | 20.0% |
| !!! | ATTTTTTGGGTATTTTGTAA+TGG | - | chr8_2:9668428-9668447 | Msa1233030:CDS | 20.0% |
| !! | TGTCACTTCATATATCTATT+AGG | + | chr8_2:9663896-9663915 | None:intergenic | 25.0% |
| ! | TATTGACAAAGTTTCAATAC+AGG | - | chr8_2:9664107-9664126 | Msa1233030:three_prime_UTR | 25.0% |
| !!! | AGATTTTAATGTTTTCAGGA+TGG | - | chr8_2:9664137-9664156 | Msa1233030:three_prime_UTR | 25.0% |
| !!! | GATTTTAATGTTTTCAGGAT+GGG | - | chr8_2:9664138-9664157 | Msa1233030:three_prime_UTR | 25.0% |
| !! | TCCTTTATTTATTGTGAAGT+TGG | - | chr8_2:9664423-9664442 | Msa1233030:CDS | 25.0% |
| ! | CATATGACTAATTCAATCTA+TGG | + | chr8_2:9664612-9664631 | None:intergenic | 25.0% |
| ! | ATTAGTCATATGTATTAGCT+TGG | - | chr8_2:9664620-9664639 | Msa1233030:intron | 25.0% |
| !! | ATCTTTTTACGTATAACTGA+TGG | - | chr8_2:9665116-9665135 | Msa1233030:intron | 25.0% |
| ! | TATTCTCTTATAAATAGGAC+CGG | - | chr8_2:9665695-9665714 | Msa1233030:CDS | 25.0% |
| ! | TATAAACTATTTCGGTATGA+GGG | + | chr8_2:9665846-9665865 | None:intergenic | 25.0% |
| ! | TTATAAACTATTTCGGTATG+AGG | + | chr8_2:9665847-9665866 | None:intergenic | 25.0% |
| ! | ATAAAACTTATCATCTGAAG+AGG | - | chr8_2:9665863-9665882 | Msa1233030:intron | 25.0% |
| !! | TTTCTTTCTAGTCTATGTAT+TGG | - | chr8_2:9665956-9665975 | Msa1233030:intron | 25.0% |
| !! | TTCTTTCTAGTCTATGTATT+GGG | - | chr8_2:9665957-9665976 | Msa1233030:intron | 25.0% |
| ! | ATCACAATGAATATGTAAAC+AGG | - | chr8_2:9666222-9666241 | Msa1233030:intron | 25.0% |
| !!! | TGCTTTCTATTTTTTTCTTC+TGG | - | chr8_2:9666507-9666526 | Msa1233030:intron | 25.0% |
| ! | AATAAAACCATTTGGCTAAA+TGG | + | chr8_2:9666547-9666566 | None:intergenic | 25.0% |
| !!! | ATCACAAACTAGTTGTTTTA+AGG | + | chr8_2:9666827-9666846 | None:intergenic | 25.0% |
| !!! | ATGAAATTGTTTTATCAAGG+TGG | - | chr8_2:9667293-9667312 | Msa1233030:intron | 25.0% |
| !! | TTTGAAGCTATTGTATATGT+TGG | + | chr8_2:9667535-9667554 | None:intergenic | 25.0% |
| !!! | GGAACAAGATGATTTTAATT+TGG | - | chr8_2:9667594-9667613 | Msa1233030:intron | 25.0% |
| ! | TTACAGAAATTATGGTACAA+AGG | + | chr8_2:9668293-9668312 | None:intergenic | 25.0% |
| ! | TACTTGTGTTACAGAAATTA+TGG | + | chr8_2:9668301-9668320 | None:intergenic | 25.0% |
| ! | TAAAGCAAATTCCTATTTCA+TGG | - | chr8_2:9668453-9668472 | Msa1233030:intron | 25.0% |
| ! | TGAAATGAGATAGAATAGAA+TGG | + | chr8_2:9668532-9668551 | None:intergenic | 25.0% |
| !! | TGTTTTAAATTGTTTGCTGC+TGG | - | chr8_2:9663926-9663945 | Msa1233030:three_prime_UTR | 30.0% |
| TTGGTACTATATCTGCAAAT+GGG | - | chr8_2:9663978-9663997 | Msa1233030:three_prime_UTR | 30.0% | |
| ! | ATATTGGAGAATTGATAGCA+AGG | - | chr8_2:9664008-9664027 | Msa1233030:three_prime_UTR | 30.0% |
| ! | TATTGGAGAATTGATAGCAA+GGG | - | chr8_2:9664009-9664028 | Msa1233030:three_prime_UTR | 30.0% |
| ! | TCTTTTGTCACTGACATATA+TGG | - | chr8_2:9664276-9664295 | Msa1233030:three_prime_UTR | 30.0% |
| CTGTGATAAACATATGATGA+TGG | - | chr8_2:9664347-9664366 | Msa1233030:exon | 30.0% | |
| !! | ACATATGATGATGGTATACT+TGG | - | chr8_2:9664356-9664375 | Msa1233030:exon | 30.0% |
| !! | CATATGATGATGGTATACTT+GGG | - | chr8_2:9664357-9664376 | Msa1233030:exon | 30.0% |
| !! | ATATGATGATGGTATACTTG+GGG | - | chr8_2:9664358-9664377 | Msa1233030:exon | 30.0% |
| GCCAACTTCACAATAAATAA+AGG | + | chr8_2:9664427-9664446 | None:intergenic | 30.0% | |
| TATTTATTGTGAAGTTGGCA+AGG | - | chr8_2:9664428-9664447 | Msa1233030:CDS | 30.0% | |
| !!! | CAACAGGGTCTTTTTTATAA+AGG | + | chr8_2:9664456-9664475 | None:intergenic | 30.0% |
| ! | AATCATGTGATCATTTGTTG+AGG | - | chr8_2:9664489-9664508 | Msa1233030:intron | 30.0% |
| ! | AAATTTTCTTGTCATGGATG+AGG | + | chr8_2:9664762-9664781 | None:intergenic | 30.0% |
| !! | TGTCTGAAATTTTCTTGTCA+TGG | + | chr8_2:9664768-9664787 | None:intergenic | 30.0% |
| TGACAAGAAAATTTCAGACA+TGG | - | chr8_2:9664768-9664787 | Msa1233030:intron | 30.0% | |
| GACAAGAAAATTTCAGACAT+GGG | - | chr8_2:9664769-9664788 | Msa1233030:intron | 30.0% | |
| TTAAGGTAACAGGTTTATCT+TGG | - | chr8_2:9665000-9665019 | Msa1233030:intron | 30.0% | |
| TCTTGAATGCAATTGGAATT+TGG | + | chr8_2:9665489-9665508 | None:intergenic | 30.0% | |
| TCCTGTTTATAAGAGAAAGT+TGG | - | chr8_2:9665603-9665622 | Msa1233030:intron | 30.0% | |
| CCTGTTTATAAGAGAAAGTT+GGG | - | chr8_2:9665604-9665623 | Msa1233030:intron | 30.0% | |
| !! | TCAACAAAAGTTGATGTATC+TGG | - | chr8_2:9665627-9665646 | Msa1233030:CDS | 30.0% |
| !! | TCAACAAAAGTTGATGTATC+TGG | + | chr8_2:9665627-9665646 | None:intergenic | 30.0% |
| GTCATAGATGAATATTCAGA+TGG | - | chr8_2:9665896-9665915 | Msa1233030:intron | 30.0% | |
| ! | TCTTTCTAGTCTATGTATTG+GGG | - | chr8_2:9665958-9665977 | Msa1233030:intron | 30.0% |
| GAACCAAAGAATAGTTATGT+TGG | + | chr8_2:9666330-9666349 | None:intergenic | 30.0% | |
| CAAAAATGGAGAAAAATACC+TGG | + | chr8_2:9666467-9666486 | None:intergenic | 30.0% | |
| ! | CAGGTATTTTTCTCCATTTT+TGG | - | chr8_2:9666465-9666484 | Msa1233030:intron | 30.0% |
| ! | TAGCAGACTGTTGATAAAAA+TGG | - | chr8_2:9666638-9666657 | Msa1233030:intron | 30.0% |
| ATTCGATAAAGAAAAAGCTC+AGG | - | chr8_2:9666747-9666766 | Msa1233030:intron | 30.0% | |
| ATAAAGAAAAAGCTCAGGAA+CGG | - | chr8_2:9666752-9666771 | Msa1233030:intron | 30.0% | |
| AAATGACAAATTGAGTTACC+TGG | + | chr8_2:9667003-9667022 | None:intergenic | 30.0% | |
| ! | TTGTCATTTCTGAATTCTGA+TGG | - | chr8_2:9667014-9667033 | Msa1233030:intron | 30.0% |
| ! | TGTCATTTCTGAATTCTGAT+GGG | - | chr8_2:9667015-9667034 | Msa1233030:intron | 30.0% |
| ! | AAAACTTTTACTGTTCTGTG+TGG | - | chr8_2:9667104-9667123 | Msa1233030:intron | 30.0% |
| ATTCATAGTTAGTGTGAAAC+AGG | - | chr8_2:9667206-9667225 | Msa1233030:intron | 30.0% | |
| !! | AAATTGTTTTATCAAGGTGG+TGG | - | chr8_2:9667296-9667315 | Msa1233030:intron | 30.0% |
| TATACAATAGCTTCAAATGC+TGG | - | chr8_2:9667538-9667557 | Msa1233030:intron | 30.0% | |
| ATAATCTCAATTGCGTAAAC+AGG | + | chr8_2:9667646-9667665 | None:intergenic | 30.0% | |
| TAAAGTTGTTAGAACAGCTT+TGG | - | chr8_2:9667841-9667860 | Msa1233030:intron | 30.0% | |
| TGTCATTATATGATCTTACC+TGG | + | chr8_2:9667876-9667895 | None:intergenic | 30.0% | |
| ! | CATCAGTTTTCTATTTATCG+AGG | - | chr8_2:9668107-9668126 | Msa1233030:intron | 30.0% |
| AAGCTGCTAAAGTTTAAACT+TGG | - | chr8_2:9668130-9668149 | Msa1233030:intron | 30.0% | |
| AGCTGCTAAAGTTTAAACTT+GGG | - | chr8_2:9668131-9668150 | Msa1233030:intron | 30.0% | |
| !!! | TAAAACTTGTCCCGTTTTTT+AGG | - | chr8_2:9668257-9668276 | Msa1233030:CDS | 30.0% |
| ATGAATGACACCTAAAAAAC+GGG | + | chr8_2:9668270-9668289 | None:intergenic | 30.0% | |
| GATGAATGACACCTAAAAAA+CGG | + | chr8_2:9668271-9668290 | None:intergenic | 30.0% | |
| CAAATTCCTATTTCATGGTT+TGG | - | chr8_2:9668458-9668477 | Msa1233030:intron | 30.0% | |
| ATACATCCAAACCATGAAAT+AGG | + | chr8_2:9668467-9668486 | None:intergenic | 30.0% | |
| GTTGGTACTATATCTGCAAA+TGG | - | chr8_2:9663977-9663996 | Msa1233030:three_prime_UTR | 35.0% | |
| TGGTACTATATCTGCAAATG+GGG | - | chr8_2:9663979-9663998 | Msa1233030:three_prime_UTR | 35.0% | |
| GAACACTATGGATAATGAGT+TGG | - | chr8_2:9664160-9664179 | Msa1233030:three_prime_UTR | 35.0% | |
| ! | AATGAGTTGGAAGTAGTAGA+AGG | - | chr8_2:9664173-9664192 | Msa1233030:three_prime_UTR | 35.0% |
| TGCACTAGCATGTTATTGTA+CGG | - | chr8_2:9664316-9664335 | Msa1233030:three_prime_UTR | 35.0% | |
| !! | TATGATGATGGTATACTTGG+GGG | - | chr8_2:9664359-9664378 | Msa1233030:CDS | 35.0% |
| !!! | ATGTCGGTTTTGTTAGGAAT+TGG | - | chr8_2:9664723-9664742 | Msa1233030:intron | 35.0% |
| TTGTCATGGATGAGGATAAA+GGG | + | chr8_2:9664754-9664773 | None:intergenic | 35.0% | |
| TTATCTGTCCTGCTATCTAA+AGG | - | chr8_2:9665023-9665042 | Msa1233030:CDS | 35.0% | |
| ATCTAAAGGTCCTACAAACT+TGG | - | chr8_2:9665037-9665056 | Msa1233030:CDS | 35.0% | |
| AAACCAGAAACCAAGTTTGT+AGG | + | chr8_2:9665050-9665069 | None:intergenic | 35.0% | |
| TGTTGCTACTACTTACAACT+TGG | - | chr8_2:9665143-9665162 | Msa1233030:intron | 35.0% | |
| GTTGCTACTACTTACAACTT+GGG | - | chr8_2:9665144-9665163 | Msa1233030:intron | 35.0% | |
| TATGTTGTCGATGTTACACA+AGG | - | chr8_2:9665198-9665217 | Msa1233030:intron | 35.0% | |
| ATGTTGTCGATGTTACACAA+GGG | - | chr8_2:9665199-9665218 | Msa1233030:intron | 35.0% | |
| TGTCTTTGCTCTGTTTACAT+TGG | + | chr8_2:9665353-9665372 | None:intergenic | 35.0% | |
| CCATCTACAGATAACTCTAA+CGG | - | chr8_2:9665379-9665398 | Msa1233030:intron | 35.0% | |
| CATCTACAGATAACTCTAAC+GGG | - | chr8_2:9665380-9665399 | Msa1233030:intron | 35.0% | |
| ATCTACAGATAACTCTAACG+GGG | - | chr8_2:9665381-9665400 | Msa1233030:intron | 35.0% | |
| TCAGCGATCGTATATAGAAT+AGG | + | chr8_2:9665448-9665467 | None:intergenic | 35.0% | |
| ACTATATATAGTACTCCCTC+TGG | - | chr8_2:9665580-9665599 | Msa1233030:intron | 35.0% | |
| CCCAACTTTCTCTTATAAAC+AGG | + | chr8_2:9665607-9665626 | None:intergenic | 35.0% | |
| !! | CTATAAAAGCTCCTGGTTTT+GGG | - | chr8_2:9666083-9666102 | Msa1233030:intron | 35.0% |
| !!! | TATAAAAGCTCCTGGTTTTG+GGG | - | chr8_2:9666084-9666103 | Msa1233030:intron | 35.0% |
| GAGCCAACATAACTATTCTT+TGG | - | chr8_2:9666324-9666343 | Msa1233030:CDS | 35.0% | |
| GATGACACTATTGTTCTACA+TGG | - | chr8_2:9666405-9666424 | Msa1233030:intron | 35.0% | |
| !! | GTTTTTGCCATTTAGCCAAA+TGG | - | chr8_2:9666537-9666556 | Msa1233030:intron | 35.0% |
| TATCAACAGTCTGCTATCAA+AGG | + | chr8_2:9666634-9666653 | None:intergenic | 35.0% | |
| TCATTACCTTACATGGAAGA+TGG | - | chr8_2:9666865-9666884 | Msa1233030:intron | 35.0% | |
| TTAGATCCATCTTCCATGTA+AGG | + | chr8_2:9666874-9666893 | None:intergenic | 35.0% | |
| AGATGGATCTAAACATCTAC+AGG | - | chr8_2:9666882-9666901 | Msa1233030:intron | 35.0% | |
| CTTATATGCTAGCAAAGTCT+TGG | - | chr8_2:9667328-9667347 | Msa1233030:intron | 35.0% | |
| GAACCTTCAAACTAAAAACG+AGG | - | chr8_2:9667352-9667371 | Msa1233030:intron | 35.0% | |
| !!! | CATCCTCGTTTTTAGTTTGA+AGG | + | chr8_2:9667358-9667377 | None:intergenic | 35.0% |
| GATTATTCAGAATGCACTCA+AGG | - | chr8_2:9667394-9667413 | Msa1233030:intron | 35.0% | |
| GGTAAAGTCAGAATAGTGAA+GGG | + | chr8_2:9667461-9667480 | None:intergenic | 35.0% | |
| AGGTAAAGTCAGAATAGTGA+AGG | + | chr8_2:9667462-9667481 | None:intergenic | 35.0% | |
| TTCACTATTCTGACTTTACC+TGG | - | chr8_2:9667461-9667480 | Msa1233030:CDS | 35.0% | |
| !! | CAACAATTTGCTGTGAACTA+GGG | + | chr8_2:9667575-9667594 | None:intergenic | 35.0% |
| ACAGCAAAGGATAATCACAA+TGG | + | chr8_2:9667677-9667696 | None:intergenic | 35.0% | |
| TTCGATAAACAAGACAGCAA+AGG | + | chr8_2:9667690-9667709 | None:intergenic | 35.0% | |
| GATGCTTATTCTGCTAAAAC+AGG | - | chr8_2:9667776-9667795 | Msa1233030:intron | 35.0% | |
| AACAGGAACCTATGTTGATA+TGG | - | chr8_2:9667793-9667812 | Msa1233030:intron | 35.0% | |
| AACCTATGTTGATATGGTGA+AGG | - | chr8_2:9667799-9667818 | Msa1233030:intron | 35.0% | |
| GCTGTTCTAACAACTTTAAC+AGG | + | chr8_2:9667839-9667858 | None:intergenic | 35.0% | |
| TAGTCCAAATCATCCATATC+TGG | + | chr8_2:9668050-9668069 | None:intergenic | 35.0% | |
| GCTGCTAAAGTTTAAACTTG+GGG | - | chr8_2:9668132-9668151 | Msa1233030:intron | 35.0% | |
| CTGCTAAAGTTTAAACTTGG+GGG | - | chr8_2:9668133-9668152 | Msa1233030:intron | 35.0% | |
| TGCTAAAGTTTAAACTTGGG+GGG | - | chr8_2:9668134-9668153 | Msa1233030:intron | 35.0% | |
| TAAAAATGAATGGAGCGGAA+TGG | - | chr8_2:9668366-9668385 | Msa1233030:CDS | 35.0% | |
| TCTATTAGGAAGACGACTAG+CGG | + | chr8_2:9663882-9663901 | None:intergenic | 40.0% | |
| ! | AGAATTGATAGCAAGGGCAA+TGG | - | chr8_2:9664015-9664034 | Msa1233030:three_prime_UTR | 40.0% |
| !! | TTTTCAGGATGGGAACACTA+TGG | - | chr8_2:9664148-9664167 | Msa1233030:three_prime_UTR | 40.0% |
| GAAGGAATGAAGTTGTCTAG+AGG | - | chr8_2:9664191-9664210 | Msa1233030:three_prime_UTR | 40.0% | |
| !! | ATGATGATGGTATACTTGGG+GGG | - | chr8_2:9664360-9664379 | Msa1233030:CDS | 40.0% |
| TTGTTGAGGACACAGTGTTA+TGG | - | chr8_2:9664503-9664522 | Msa1233030:intron | 40.0% | |
| !!! | AAGGTGATGTCGGTTTTGTT+AGG | - | chr8_2:9664717-9664736 | Msa1233030:intron | 40.0% |
| TGTCATGGATGAGGATAAAG+GGG | + | chr8_2:9664753-9664772 | None:intergenic | 40.0% | |
| CTTGTCATGGATGAGGATAA+AGG | + | chr8_2:9664755-9664774 | None:intergenic | 40.0% | |
| CAGCTCCAATACTTTCAACA+GGG | + | chr8_2:9664797-9664816 | None:intergenic | 40.0% | |
| ACAGCTCCAATACTTTCAAC+AGG | + | chr8_2:9664798-9664817 | None:intergenic | 40.0% | |
| ! | AGTATTGGAGCTGTCAGTAA+CGG | - | chr8_2:9664804-9664823 | Msa1233030:CDS | 40.0% |
| AGATGTTGACAGTGATGCAT+TGG | - | chr8_2:9664944-9664963 | Msa1233030:intron | 40.0% | |
| ATACTCAACAAGCATCATGC+CGG | - | chr8_2:9664975-9664994 | Msa1233030:intron | 40.0% | |
| TAAACCTGTTACCTTAAGCC+CGG | + | chr8_2:9664997-9665016 | None:intergenic | 40.0% | |
| TTGTAGGACCTTTAGATAGC+AGG | + | chr8_2:9665034-9665053 | None:intergenic | 40.0% | |
| TATGTTGTCGATGTTACACG+AGG | - | chr8_2:9665242-9665261 | Msa1233030:intron | 40.0% | |
| ATGTTGTCGATGTTACACGA+GGG | - | chr8_2:9665243-9665262 | Msa1233030:intron | 40.0% | |
| TATGTTGTCGATGTTACACG+AGG | - | chr8_2:9665242-9665261 | Msa1233030:intron | 40.0% | |
| ATGTTGTCGATGTTACACGA+GGG | - | chr8_2:9665243-9665262 | Msa1233030:intron | 40.0% | |
| CCGTTAGAGTTATCTGTAGA+TGG | + | chr8_2:9665382-9665401 | None:intergenic | 40.0% | |
| TCTACAGATAACTCTAACGG+GGG | - | chr8_2:9665382-9665401 | Msa1233030:intron | 40.0% | |
| ! | GAATTTGGAACGCTTTACAC+AGG | + | chr8_2:9665474-9665493 | None:intergenic | 40.0% |
| CTCTTATAAACAGGACCAGA+GGG | + | chr8_2:9665598-9665617 | None:intergenic | 40.0% | |
| TCTCTTATAAACAGGACCAG+AGG | + | chr8_2:9665599-9665618 | None:intergenic | 40.0% | |
| TCTCTTATAAATAGGACCGG+AGG | - | chr8_2:9665698-9665717 | Msa1233030:CDS | 40.0% | |
| CTCTTATAAATAGGACCGGA+GGG | - | chr8_2:9665699-9665718 | Msa1233030:intron | 40.0% | |
| AATGCAAGCTACTTGGAACT+TGG | - | chr8_2:9665983-9666002 | Msa1233030:CDS | 40.0% | |
| GTTTGTGCTATAAAAGCTCC+TGG | - | chr8_2:9666076-9666095 | Msa1233030:intron | 40.0% | |
| ! | GCTATAAAAGCTCCTGGTTT+TGG | - | chr8_2:9666082-9666101 | Msa1233030:intron | 40.0% |
| GATGATCTTGCGATTCTTAC+TGG | - | chr8_2:9666127-9666146 | Msa1233030:CDS | 40.0% | |
| !! | TTTTGCTGTGCCAAGCATTT+CGG | + | chr8_2:9666290-9666309 | None:intergenic | 40.0% |
| AATGCTTGGCACAGCAAAAA+AGG | - | chr8_2:9666291-9666310 | Msa1233030:CDS | 40.0% | |
| GACACTATTGTTCTACATGG+TGG | - | chr8_2:9666408-9666427 | Msa1233030:intron | 40.0% | |
| ACTATTGTTCTACATGGTGG+CGG | - | chr8_2:9666411-9666430 | Msa1233030:intron | 40.0% | |
| GGATCTAAACATCTACAGGT+TGG | - | chr8_2:9666886-9666905 | Msa1233030:intron | 40.0% | |
| ! | TCTAAACATCTACAGGTTGG+TGG | - | chr8_2:9666889-9666908 | Msa1233030:intron | 40.0% |
| AGAGCAGTGTTGTCAAATAG+TGG | - | chr8_2:9667057-9667076 | Msa1233030:intron | 40.0% | |
| ATAGTGGCACTATAGTGTAG+TGG | - | chr8_2:9667073-9667092 | Msa1233030:intron | 40.0% | |
| AAAAACGAGGATGAGAGAAG+AGG | - | chr8_2:9667365-9667384 | Msa1233030:intron | 40.0% | |
| !!! | GCTTCAAATGCTGGTTTTGA+TGG | - | chr8_2:9667547-9667566 | Msa1233030:intron | 40.0% |
| !! | CCAACAATTTGCTGTGAACT+AGG | + | chr8_2:9667576-9667595 | None:intergenic | 40.0% |
| CCTAGTTCACAGCAAATTGT+TGG | - | chr8_2:9667573-9667592 | Msa1233030:intron | 40.0% | |
| !! | TTGGGTTTTGATGCTGCTAA+AGG | - | chr8_2:9667613-9667632 | Msa1233030:CDS | 40.0% |
| AGCCTTCACCATATCAACAT+AGG | + | chr8_2:9667804-9667823 | None:intergenic | 40.0% | |
| TATGTTGATATGGTGAAGGC+TGG | - | chr8_2:9667803-9667822 | Msa1233030:intron | 40.0% | |
| AGCAACGAAACACTGCATTA+GGG | + | chr8_2:9667960-9667979 | None:intergenic | 40.0% | |
| TAGCAACGAAACACTGCATT+AGG | + | chr8_2:9667961-9667980 | None:intergenic | 40.0% | |
| ATTCTCCACAATAGATGCCT+CGG | + | chr8_2:9667994-9668013 | None:intergenic | 40.0% | |
| ACAAGAATAAACCTCCCCAA+AGG | - | chr8_2:9668021-9668040 | Msa1233030:intron | 40.0% | |
| CAAGAATAAACCTCCCCAAA+GGG | - | chr8_2:9668022-9668041 | Msa1233030:intron | 40.0% | |
| ! | CTTTCATCGTTTGTTGAAGC+AGG | + | chr8_2:9668077-9668096 | None:intergenic | 40.0% |
| AACTTGGGGGGTCTAATTTA+AGG | - | chr8_2:9668146-9668165 | Msa1233030:intron | 40.0% | |
| AGCCTACGATTCAATGTCAT+AGG | - | chr8_2:9668188-9668207 | Msa1233030:CDS | 40.0% | |
| GCCTACGATTCAATGTCATA+GGG | - | chr8_2:9668189-9668208 | Msa1233030:CDS | 40.0% | |
| TCCCTATGACATTGAATCGT+AGG | + | chr8_2:9668193-9668212 | None:intergenic | 40.0% | |
| CAAGGGCAATGGAGAAAGTT+GGG | - | chr8_2:9664026-9664045 | Msa1233030:three_prime_UTR | 45.0% | |
| ATGGAGAAAGTTGGGAAGGA+AGG | - | chr8_2:9664034-9664053 | Msa1233030:three_prime_UTR | 45.0% | |
| ! | GGGTTCCCTGTTGAAAGTAT+TGG | - | chr8_2:9664789-9664808 | Msa1233030:intron | 45.0% |
| AAGACCACTCCTAGTTGTTG+CGG | - | chr8_2:9664920-9664939 | Msa1233030:intron | 45.0% | |
| CAACATCTTCCGCAACAACT+AGG | + | chr8_2:9664932-9664951 | None:intergenic | 45.0% | |
| TACTCAACAAGCATCATGCC+GGG | - | chr8_2:9664976-9664995 | Msa1233030:intron | 45.0% | |
| GGTCCTACAAACTTGGTTTC+TGG | - | chr8_2:9665044-9665063 | Msa1233030:CDS | 45.0% | |
| ! | ACCGGAGGGAGTGTATAATT+AGG | - | chr8_2:9665713-9665732 | Msa1233030:intron | 45.0% |
| GCCTAATTATACACTCCCTC+CGG | + | chr8_2:9665717-9665736 | None:intergenic | 45.0% | |
| GATCTTGCGATTCTTACTGG+AGG | - | chr8_2:9666130-9666149 | Msa1233030:CDS | 45.0% | |
| ! | TTTGCTGTGCCAAGCATTTC+GGG | + | chr8_2:9666289-9666308 | None:intergenic | 45.0% |
| CTATTGTTCTACATGGTGGC+GGG | - | chr8_2:9666412-9666431 | Msa1233030:intron | 45.0% | |
| ! | TATTGTTCTACATGGTGGCG+GGG | - | chr8_2:9666413-9666432 | Msa1233030:intron | 45.0% |
| TATCGAAGAGAGATGTGTCC+AGG | - | chr8_2:9666446-9666465 | Msa1233030:intron | 45.0% | |
| TTTGAAGACAGCAACACCAC+CGG | + | chr8_2:9666791-9666810 | None:intergenic | 45.0% | |
| AAGTCGGGGAAAGGAAAGAT+AGG | - | chr8_2:9666926-9666945 | Msa1233030:intron | 45.0% | |
| AGTCGGGGAAAGGAAAGATA+GGG | - | chr8_2:9666927-9666946 | Msa1233030:intron | 45.0% | |
| ATCCATATCTGGCACCCTTT+GGG | + | chr8_2:9668039-9668058 | None:intergenic | 45.0% | |
| GGTGCCAGATATGGATGATT+TGG | - | chr8_2:9668043-9668062 | Msa1233030:intron | 45.0% | |
| !! | AATGGACTAGAGCAGCGTAA+CGG | - | chr8_2:9668384-9668403 | Msa1233030:CDS | 45.0% |
| ! | GCAAATGGGGAGCGTGATAT+TGG | - | chr8_2:9663992-9664011 | Msa1233030:three_prime_UTR | 50.0% |
| GCAAGGGCAATGGAGAAAGT+TGG | - | chr8_2:9664025-9664044 | Msa1233030:three_prime_UTR | 50.0% | |
| GGCAATGGAGAAAGTTGGGA+AGG | - | chr8_2:9664030-9664049 | Msa1233030:three_prime_UTR | 50.0% | |
| TCTTCCGCAACAACTAGGAG+TGG | + | chr8_2:9664927-9664946 | None:intergenic | 50.0% | |
| CGATGTTACACGAGGGTAAG+TGG | - | chr8_2:9665250-9665269 | Msa1233030:intron | 50.0% | |
| ACAAGCCATATCCCACCAAG+TGG | - | chr8_2:9665550-9665569 | Msa1233030:intron | 50.0% | |
| CAAGCCATATCCCACCAAGT+GGG | - | chr8_2:9665551-9665570 | Msa1233030:intron | 50.0% | |
| AAGCCATATCCCACCAAGTG+GGG | - | chr8_2:9665552-9665571 | Msa1233030:intron | 50.0% | |
| !! | TATATAGTGCCGACCCCACT+TGG | + | chr8_2:9665568-9665587 | None:intergenic | 50.0% |
| TGGGGACAATGCAAGCTACT+TGG | - | chr8_2:9665976-9665995 | Msa1233030:CDS | 50.0% | |
| !!! | CTCCTGGTTTTGGGGACAAT+AGG | - | chr8_2:9666092-9666111 | Msa1233030:CDS | 50.0% |
| CTCCTATTGTCCCCAAAACC+AGG | + | chr8_2:9666097-9666116 | None:intergenic | 50.0% | |
| TGCGATTCTTACTGGAGGAG+AGG | - | chr8_2:9666135-9666154 | Msa1233030:CDS | 50.0% | |
| CAGGTCATCACAGAAGAACG+CGG | - | chr8_2:9666241-9666260 | Msa1233030:intron | 50.0% | |
| GCATACCTCTCGACAAAGTC+CGG | - | chr8_2:9666263-9666282 | Msa1233030:intron | 50.0% | |
| ! | GGCACAGCAAAAAAGGCATG+TGG | - | chr8_2:9666298-9666317 | Msa1233030:CDS | 50.0% |
| GAACGGCTGTCAAAACTCTC+CGG | - | chr8_2:9666769-9666788 | Msa1233030:intron | 50.0% | |
| AAATGCCACTAGAGCAGCTG+TGG | - | chr8_2:9666963-9666982 | Msa1233030:intron | 50.0% | |
| ! | GACAACCGAGGCATCTATTG+TGG | - | chr8_2:9667986-9668005 | Msa1233030:intron | 50.0% |
| TCCATATCTGGCACCCTTTG+GGG | + | chr8_2:9668038-9668057 | None:intergenic | 50.0% | |
| CATCCATATCTGGCACCCTT+TGG | + | chr8_2:9668040-9668059 | None:intergenic | 50.0% | |
| CAAGCATCATGCCGGGCTTA+AGG | - | chr8_2:9664983-9665002 | Msa1233030:intron | 55.0% | |
| CATGCCGGGCTTAAGGTAAC+AGG | - | chr8_2:9664990-9665009 | Msa1233030:intron | 55.0% | |
| CATATCCCACCAAGTGGGGT+CGG | - | chr8_2:9665556-9665575 | Msa1233030:intron | 55.0% | |
| AAAGTCCGGCCCGAAATGCT+TGG | - | chr8_2:9666277-9666296 | Msa1233030:CDS | 55.0% | |
| !! | ACAGGTTGGTGGTGCTAGTG+AGG | - | chr8_2:9666900-9666919 | Msa1233030:intron | 55.0% |
| GGTGCTAGTGAGGCAGAAGT+CGG | - | chr8_2:9666910-9666929 | Msa1233030:intron | 55.0% | |
| GTGCTAGTGAGGCAGAAGTC+GGG | - | chr8_2:9666911-9666930 | Msa1233030:intron | 55.0% | |
| TGCTAGTGAGGCAGAAGTCG+GGG | - | chr8_2:9666912-9666931 | Msa1233030:intron | 55.0% | |
| ACTAGAGCAGCTGTGGAGGA+GGG | - | chr8_2:9666970-9666989 | Msa1233030:intron | 55.0% | |
| !! | GTGGAGGAGGGTATTGTTCC+AGG | - | chr8_2:9666982-9667001 | Msa1233030:intron | 55.0% |
| ! | CAGCTTTGGTAGATGCTGCC+AGG | - | chr8_2:9667855-9667874 | Msa1233030:intron | 55.0% |
| GTTGCTACTGACGACAACCG+AGG | - | chr8_2:9667974-9667993 | Msa1233030:intron | 55.0% | |
| ! | ATATCTGGCACCCTTTGGGG+AGG | + | chr8_2:9668035-9668054 | None:intergenic | 55.0% |
| !! | TCCCCAAAGGGTGCCAGATA+TGG | - | chr8_2:9668034-9668053 | Msa1233030:intron | 55.0% |
| ! | CGACCCCACTTGGTGGGATA+TGG | + | chr8_2:9665558-9665577 | None:intergenic | 60.0% |
| !! | TAGTGCCGACCCCACTTGGT+GGG | + | chr8_2:9665564-9665583 | None:intergenic | 60.0% |
| !! | ATAGTGCCGACCCCACTTGG+TGG | + | chr8_2:9665565-9665584 | None:intergenic | 60.0% |
| CTGTGCCAAGCATTTCGGGC+CGG | + | chr8_2:9666285-9666304 | None:intergenic | 60.0% | |
| CGGCTGTCAAAACTCTCCGG+TGG | - | chr8_2:9666772-9666791 | Msa1233030:intron | 60.0% | |
| GTGAGGCAGAAGTCGGGGAA+AGG | - | chr8_2:9666917-9666936 | Msa1233030:intron | 60.0% | |
| TGCCACTAGAGCAGCTGTGG+AGG | - | chr8_2:9666966-9666985 | Msa1233030:intron | 60.0% | |
| CTCCTCCACAGCTGCTCTAG+TGG | + | chr8_2:9666971-9666990 | None:intergenic | 60.0% | |
| CACTAGAGCAGCTGTGGAGG+AGG | - | chr8_2:9666969-9666988 | Msa1233030:intron | 60.0% | |
| TCGGGCCGGACTTTGTCGAG+AGG | + | chr8_2:9666271-9666290 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 9663870 | 9668562 | 9663870 | ID=Msa1233030;Name=Msa1233030 |
| chr8_2 | mRNA | 9663870 | 9668562 | 9663870 | ID=Msa1233030-mRNA-1;Parent=Msa1233030;Name=Msa1233030-mRNA-1;_AED=0.15;_eAED=0.15;_QI=0|0.84|0.78|0.92|0.92|0.92|14|489|414 |
| chr8_2 | exon | 9663870 | 9664464 | 9663870 | ID=Msa1233030-mRNA-1:exon:3833;Parent=Msa1233030-mRNA-1 |
| chr8_2 | exon | 9664556 | 9664634 | 9664556 | ID=Msa1233030-mRNA-1:exon:3832;Parent=Msa1233030-mRNA-1 |
| chr8_2 | exon | 9664798 | 9664903 | 9664798 | ID=Msa1233030-mRNA-1:exon:3831;Parent=Msa1233030-mRNA-1 |
| chr8_2 | exon | 9665017 | 9665120 | 9665017 | ID=Msa1233030-mRNA-1:exon:3830;Parent=Msa1233030-mRNA-1 |
| chr8_2 | exon | 9665429 | 9665528 | 9665429 | ID=Msa1233030-mRNA-1:exon:3829;Parent=Msa1233030-mRNA-1 |
| chr8_2 | exon | 9665622 | 9665717 | 9665622 | ID=Msa1233030-mRNA-1:exon:3828;Parent=Msa1233030-mRNA-1 |
| chr8_2 | exon | 9665965 | 9666042 | 9665965 | ID=Msa1233030-mRNA-1:exon:3827;Parent=Msa1233030-mRNA-1 |
| chr8_2 | exon | 9666087 | 9666188 | 9666087 | ID=Msa1233030-mRNA-1:exon:3826;Parent=Msa1233030-mRNA-1 |
| chr8_2 | exon | 9666276 | 9666356 | 9666276 | ID=Msa1233030-mRNA-1:exon:3825;Parent=Msa1233030-mRNA-1 |
| chr8_2 | exon | 9667428 | 9667517 | 9667428 | ID=Msa1233030-mRNA-1:exon:3824;Parent=Msa1233030-mRNA-1 |
| chr8_2 | exon | 9667607 | 9667693 | 9667607 | ID=Msa1233030-mRNA-1:exon:3823;Parent=Msa1233030-mRNA-1 |
| chr8_2 | exon | 9668173 | 9668277 | 9668173 | ID=Msa1233030-mRNA-1:exon:3822;Parent=Msa1233030-mRNA-1 |
| chr8_2 | exon | 9668360 | 9668455 | 9668360 | ID=Msa1233030-mRNA-1:exon:3821;Parent=Msa1233030-mRNA-1 |
| chr8_2 | exon | 9668548 | 9668562 | 9668548 | ID=Msa1233030-mRNA-1:exon:3820;Parent=Msa1233030-mRNA-1 |
| chr8_2 | CDS | 9668548 | 9668562 | 9668548 | ID=Msa1233030-mRNA-1:cds;Parent=Msa1233030-mRNA-1 |
| chr8_2 | CDS | 9668360 | 9668455 | 9668360 | ID=Msa1233030-mRNA-1:cds;Parent=Msa1233030-mRNA-1 |
| chr8_2 | CDS | 9668173 | 9668277 | 9668173 | ID=Msa1233030-mRNA-1:cds;Parent=Msa1233030-mRNA-1 |
| chr8_2 | CDS | 9667607 | 9667693 | 9667607 | ID=Msa1233030-mRNA-1:cds;Parent=Msa1233030-mRNA-1 |
| chr8_2 | CDS | 9667428 | 9667517 | 9667428 | ID=Msa1233030-mRNA-1:cds;Parent=Msa1233030-mRNA-1 |
| chr8_2 | CDS | 9666276 | 9666356 | 9666276 | ID=Msa1233030-mRNA-1:cds;Parent=Msa1233030-mRNA-1 |
| chr8_2 | CDS | 9666087 | 9666188 | 9666087 | ID=Msa1233030-mRNA-1:cds;Parent=Msa1233030-mRNA-1 |
| chr8_2 | CDS | 9665965 | 9666042 | 9665965 | ID=Msa1233030-mRNA-1:cds;Parent=Msa1233030-mRNA-1 |
| chr8_2 | CDS | 9665622 | 9665717 | 9665622 | ID=Msa1233030-mRNA-1:cds;Parent=Msa1233030-mRNA-1 |
| chr8_2 | CDS | 9665429 | 9665528 | 9665429 | ID=Msa1233030-mRNA-1:cds;Parent=Msa1233030-mRNA-1 |
| chr8_2 | CDS | 9665017 | 9665120 | 9665017 | ID=Msa1233030-mRNA-1:cds;Parent=Msa1233030-mRNA-1 |
| chr8_2 | CDS | 9664798 | 9664903 | 9664798 | ID=Msa1233030-mRNA-1:cds;Parent=Msa1233030-mRNA-1 |
| chr8_2 | CDS | 9664556 | 9664634 | 9664556 | ID=Msa1233030-mRNA-1:cds;Parent=Msa1233030-mRNA-1 |
| chr8_2 | CDS | 9664359 | 9664464 | 9664359 | ID=Msa1233030-mRNA-1:cds;Parent=Msa1233030-mRNA-1 |
| chr8_2 | three_prime_UTR | 9663870 | 9664358 | 9663870 | ID=Msa1233030-mRNA-1:three_prime_utr;Parent=Msa1233030-mRNA-1 |
| Gene Sequence |
| Protein sequence |
