Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1313640 | XP_003627109.1 | 91.221 | 524 | 31 | 5 | 1 | 516 | 1 | 517 | 0.0 | 866 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1313640 | sp|Q9LRW7|IDD11_ARATH | 47.312 | 558 | 177 | 16 | 15 | 516 | 17 | 513 | 2.12e-141 | 420 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1313640 | G7LHG9 | 91.221 | 524 | 31 | 5 | 1 | 516 | 1 | 517 | 0.0 | 866 |
Gene ID | Type | Classification |
---|---|---|
Msa1313640 | TF | C2H2 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1313640 | Msa1313670 | 0.950194 | 2.725579e-108 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1313640 | MtrunA17_Chr8g0342421 | 91.221 | 524 | 31 | 5 | 1 | 516 | 1 | 517 | 0.0 | 866 |
Msa1313640 | MtrunA17_Chr2g0330171 | 57.795 | 526 | 136 | 22 | 18 | 516 | 1 | 467 | 2.93e-180 | 514 |
Msa1313640 | MtrunA17_Chr1g0151351 | 47.784 | 519 | 190 | 15 | 1 | 510 | 1 | 447 | 8.18e-133 | 393 |
Msa1313640 | MtrunA17_Chr4g0029521 | 44.854 | 515 | 213 | 15 | 29 | 506 | 8 | 488 | 8.66e-118 | 356 |
Msa1313640 | MtrunA17_Chr1g0185121 | 53.608 | 388 | 118 | 11 | 18 | 385 | 6 | 351 | 1.18e-116 | 351 |
Msa1313640 | MtrunA17_Chr8g0373541 | 76.812 | 207 | 35 | 2 | 17 | 223 | 3 | 196 | 1.20e-116 | 353 |
Msa1313640 | MtrunA17_Chr1g0191991 | 60.577 | 312 | 89 | 7 | 58 | 356 | 61 | 351 | 2.14e-116 | 353 |
Msa1313640 | MtrunA17_Chr7g0263941 | 55.068 | 365 | 115 | 11 | 57 | 409 | 31 | 358 | 1.18e-115 | 347 |
Msa1313640 | MtrunA17_Chr1g0181381 | 54.958 | 353 | 102 | 8 | 55 | 359 | 34 | 377 | 1.09e-114 | 348 |
Msa1313640 | MtrunA17_Chr4g0040571 | 86.471 | 170 | 21 | 1 | 54 | 223 | 35 | 202 | 5.51e-112 | 341 |
Msa1313640 | MtrunA17_Chr1g0162971 | 55.357 | 336 | 98 | 8 | 60 | 354 | 41 | 365 | 1.16e-111 | 338 |
Msa1313640 | MtrunA17_Chr1g0199101 | 88.415 | 164 | 19 | 0 | 58 | 221 | 45 | 208 | 6.23e-111 | 340 |
Msa1313640 | MtrunA17_Chr1g0163001 | 84.302 | 172 | 27 | 0 | 55 | 226 | 38 | 209 | 2.03e-109 | 335 |
Msa1313640 | MtrunA17_Chr7g0268961 | 52.707 | 351 | 121 | 9 | 70 | 403 | 32 | 354 | 2.12e-108 | 332 |
Msa1313640 | MtrunA17_Chr2g0326381 | 68.981 | 216 | 56 | 4 | 59 | 265 | 31 | 244 | 2.37e-104 | 318 |
Msa1313640 | MtrunA17_Chr2g0324991 | 87.786 | 131 | 16 | 0 | 71 | 201 | 3 | 133 | 1.30e-85 | 261 |
Msa1313640 | MtrunA17_Chr6g0479921 | 65.385 | 156 | 53 | 1 | 60 | 214 | 29 | 184 | 1.16e-74 | 243 |
Msa1313640 | MtrunA17_Chr8g0375521 | 64.103 | 156 | 54 | 2 | 60 | 213 | 27 | 182 | 2.01e-72 | 236 |
Msa1313640 | MtrunA17_Chr2g0320341 | 34.839 | 155 | 87 | 3 | 69 | 209 | 224 | 378 | 5.45e-25 | 107 |
Msa1313640 | MtrunA17_Chr3g0123941 | 35.897 | 156 | 92 | 3 | 65 | 212 | 113 | 268 | 1.05e-24 | 105 |
Msa1313640 | MtrunA17_Chr1g0200421 | 34.731 | 167 | 92 | 5 | 59 | 212 | 224 | 386 | 2.75e-24 | 106 |
Msa1313640 | MtrunA17_Chr5g0422571 | 35.484 | 155 | 87 | 6 | 83 | 226 | 108 | 260 | 6.06e-21 | 93.2 |
Msa1313640 | MtrunA17_Chr8g0382121 | 34.459 | 148 | 86 | 5 | 73 | 209 | 109 | 256 | 7.51e-21 | 93.2 |
Msa1313640 | MtrunA17_Chr7g0258011 | 33.333 | 159 | 86 | 6 | 83 | 223 | 183 | 339 | 7.07e-20 | 91.3 |
Msa1313640 | MtrunA17_Chr8g0352011 | 36.429 | 140 | 77 | 6 | 83 | 212 | 173 | 310 | 1.80e-19 | 89.7 |
Msa1313640 | MtrunA17_Chr1g0198651 | 33.333 | 156 | 89 | 6 | 83 | 225 | 109 | 262 | 2.35e-19 | 88.6 |
Msa1313640 | MtrunA17_Chr4g0053341 | 32.911 | 158 | 95 | 5 | 64 | 212 | 63 | 218 | 8.29e-19 | 85.5 |
Msa1313640 | MtrunA17_Chr1g0173841 | 34.286 | 140 | 80 | 5 | 83 | 212 | 222 | 359 | 1.82e-18 | 87.4 |
Msa1313640 | MtrunA17_Chr2g0328921 | 33.571 | 140 | 81 | 5 | 83 | 212 | 145 | 282 | 6.36e-18 | 84.7 |
Msa1313640 | MtrunA17_Chr4g0026521 | 34.286 | 140 | 80 | 5 | 83 | 212 | 125 | 262 | 9.35e-18 | 84.0 |
Msa1313640 | MtrunA17_Chr2g0321291 | 35.714 | 140 | 78 | 6 | 83 | 212 | 140 | 277 | 2.28e-17 | 83.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1313640 | AT3G13810.5 | 47.312 | 558 | 177 | 16 | 15 | 516 | 12 | 508 | 2.00e-142 | 420 |
Msa1313640 | AT3G13810.4 | 47.312 | 558 | 177 | 16 | 15 | 516 | 17 | 513 | 2.15e-142 | 420 |
Msa1313640 | AT3G13810.1 | 47.312 | 558 | 177 | 16 | 15 | 516 | 17 | 513 | 2.15e-142 | 420 |
Msa1313640 | AT3G13810.6 | 47.207 | 555 | 176 | 16 | 18 | 516 | 1 | 494 | 1.16e-140 | 415 |
Msa1313640 | AT1G55110.3 | 49.390 | 492 | 177 | 15 | 14 | 501 | 17 | 440 | 7.40e-133 | 393 |
Msa1313640 | AT1G55110.1 | 49.390 | 492 | 177 | 15 | 14 | 501 | 17 | 440 | 7.40e-133 | 393 |
Msa1313640 | AT1G55110.2 | 49.390 | 492 | 177 | 15 | 14 | 501 | 17 | 440 | 7.40e-133 | 393 |
Msa1313640 | AT3G13810.2 | 45.035 | 564 | 187 | 16 | 15 | 516 | 12 | 514 | 1.75e-128 | 384 |
Msa1313640 | AT3G13810.3 | 44.920 | 561 | 186 | 16 | 18 | 516 | 1 | 500 | 5.14e-127 | 380 |
Msa1313640 | AT5G44160.1 | 48.798 | 416 | 175 | 8 | 29 | 410 | 8 | 419 | 1.93e-114 | 347 |
Msa1313640 | AT1G03840.1 | 78.173 | 197 | 38 | 2 | 52 | 248 | 35 | 226 | 3.53e-112 | 342 |
Msa1313640 | AT5G66730.1 | 75.362 | 207 | 34 | 2 | 17 | 222 | 4 | 194 | 3.94e-112 | 342 |
Msa1313640 | AT3G50700.1 | 72.857 | 210 | 38 | 2 | 17 | 223 | 4 | 197 | 9.33e-112 | 339 |
Msa1313640 | AT2G02080.1 | 51.955 | 358 | 108 | 11 | 58 | 362 | 52 | 398 | 9.30e-110 | 336 |
Msa1313640 | AT2G02080.4 | 51.955 | 358 | 108 | 11 | 58 | 362 | 52 | 398 | 9.30e-110 | 336 |
Msa1313640 | AT2G02080.5 | 51.955 | 358 | 108 | 11 | 58 | 362 | 52 | 398 | 9.30e-110 | 336 |
Msa1313640 | AT2G02080.3 | 51.955 | 358 | 108 | 11 | 58 | 362 | 52 | 398 | 9.30e-110 | 336 |
Msa1313640 | AT1G14580.1 | 72.277 | 202 | 52 | 1 | 21 | 222 | 18 | 215 | 5.29e-109 | 333 |
Msa1313640 | AT1G14580.2 | 72.277 | 202 | 52 | 1 | 21 | 222 | 18 | 215 | 5.29e-109 | 333 |
Msa1313640 | AT4G02670.2 | 52.243 | 379 | 107 | 13 | 27 | 399 | 19 | 329 | 5.82e-109 | 330 |
Msa1313640 | AT4G02670.1 | 52.243 | 379 | 107 | 13 | 27 | 399 | 17 | 327 | 8.06e-109 | 330 |
Msa1313640 | AT3G45260.2 | 81.768 | 181 | 24 | 2 | 60 | 231 | 39 | 219 | 8.33e-109 | 331 |
Msa1313640 | AT3G45260.1 | 81.768 | 181 | 24 | 2 | 60 | 231 | 39 | 219 | 8.33e-109 | 331 |
Msa1313640 | AT1G14580.3 | 72.277 | 202 | 52 | 1 | 21 | 222 | 32 | 229 | 1.23e-108 | 332 |
Msa1313640 | AT1G03840.2 | 77.157 | 197 | 38 | 3 | 52 | 248 | 35 | 224 | 2.61e-108 | 332 |
Msa1313640 | AT2G02070.2 | 79.888 | 179 | 34 | 1 | 60 | 238 | 52 | 228 | 9.29e-106 | 328 |
Msa1313640 | AT2G02070.1 | 79.888 | 179 | 34 | 1 | 60 | 238 | 52 | 228 | 9.29e-106 | 328 |
Msa1313640 | AT5G44160.2 | 49.333 | 375 | 154 | 7 | 70 | 410 | 8 | 380 | 1.73e-105 | 322 |
Msa1313640 | AT5G03150.1 | 74.129 | 201 | 40 | 3 | 60 | 257 | 53 | 244 | 6.45e-105 | 323 |
Msa1313640 | AT5G60470.2 | 78.947 | 171 | 35 | 1 | 56 | 225 | 40 | 210 | 1.88e-102 | 315 |
Msa1313640 | AT5G60470.3 | 74.332 | 187 | 44 | 2 | 40 | 225 | 23 | 206 | 1.91e-102 | 315 |
Msa1313640 | AT2G02080.6 | 50.000 | 334 | 99 | 11 | 84 | 362 | 1 | 321 | 1.57e-94 | 294 |
Msa1313640 | AT2G02080.2 | 50.000 | 334 | 99 | 11 | 84 | 362 | 1 | 321 | 1.57e-94 | 294 |
Msa1313640 | AT5G60470.1 | 73.988 | 173 | 43 | 2 | 52 | 222 | 26 | 198 | 4.05e-94 | 294 |
Msa1313640 | AT1G25250.3 | 65.605 | 157 | 51 | 2 | 60 | 213 | 33 | 189 | 4.30e-74 | 239 |
Msa1313640 | AT1G68130.1 | 65.385 | 156 | 52 | 2 | 60 | 213 | 41 | 196 | 1.41e-73 | 239 |
Msa1313640 | AT2G01940.1 | 64.198 | 162 | 56 | 2 | 56 | 215 | 40 | 201 | 3.29e-73 | 239 |
Msa1313640 | AT1G25250.1 | 62.577 | 163 | 56 | 3 | 56 | 213 | 4 | 166 | 3.69e-71 | 231 |
Msa1313640 | AT2G01940.3 | 63.190 | 163 | 57 | 3 | 56 | 215 | 40 | 202 | 1.12e-69 | 230 |
Msa1313640 | AT1G68130.2 | 66.364 | 110 | 35 | 2 | 106 | 213 | 1 | 110 | 3.57e-47 | 167 |
Msa1313640 | AT1G25250.2 | 65.766 | 111 | 35 | 2 | 106 | 213 | 1 | 111 | 7.06e-47 | 166 |
Msa1313640 | AT2G01940.2 | 64.286 | 112 | 38 | 2 | 106 | 215 | 1 | 112 | 6.72e-46 | 164 |
Msa1313640 | AT1G34370.3 | 31.053 | 190 | 104 | 5 | 69 | 243 | 14 | 191 | 6.77e-24 | 102 |
Msa1313640 | AT1G34370.2 | 33.544 | 158 | 91 | 3 | 69 | 212 | 224 | 381 | 1.11e-23 | 104 |
Msa1313640 | AT1G34370.1 | 33.544 | 158 | 91 | 3 | 69 | 212 | 224 | 381 | 1.11e-23 | 104 |
Msa1313640 | AT5G22890.1 | 33.735 | 166 | 94 | 5 | 61 | 212 | 191 | 354 | 1.66e-23 | 102 |
Msa1313640 | AT1G13290.1 | 34.437 | 151 | 85 | 6 | 83 | 221 | 95 | 243 | 1.64e-19 | 89.7 |
Msa1313640 | AT1G08290.1 | 33.908 | 174 | 93 | 8 | 59 | 212 | 141 | 312 | 1.53e-18 | 87.4 |
Msa1313640 | AT1G51220.1 | 33.094 | 139 | 83 | 4 | 83 | 212 | 172 | 309 | 3.98e-18 | 86.3 |
Msa1313640 | AT3G20880.1 | 31.447 | 159 | 93 | 5 | 83 | 226 | 250 | 407 | 4.80e-18 | 86.7 |
Msa1313640 | AT3G57670.1 | 33.571 | 140 | 81 | 5 | 83 | 212 | 211 | 348 | 7.38e-18 | 85.9 |
Msa1313640 | AT1G34790.1 | 33.557 | 149 | 89 | 4 | 73 | 212 | 129 | 276 | 6.67e-17 | 82.0 |
Find 117 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCTTCTCACCATGCTTTC+TGG | 0.052883 | 8_4:+11721252 | None:intergenic |
CACCAAACATTTCATCAAAT+TGG | 0.116876 | 8_4:+11719803 | None:intergenic |
TTCTCTAGTGCCACATGTTT+TGG | 0.232714 | 8_4:+11721171 | None:intergenic |
TGTAATCATAAGATGGTAAA+AGG | 0.239938 | 8_4:-11721835 | Msa1313640:exon |
TCTGGTAACAGAACTGAAAT+TGG | 0.252456 | 8_4:-11721730 | Msa1313640:CDS |
ATATATATCCCTTGTATATA+TGG | 0.257880 | 8_4:+11719542 | None:intergenic |
CCTAGTCTTGTTCATGTTCC+TGG | 0.271217 | 8_4:-11720141 | Msa1313640:CDS |
GACGGTGGCGGCGGCGGCGG+TGG | 0.280128 | 8_4:-11719712 | Msa1313640:CDS |
TATACAAGGGATATATATTA+TGG | 0.284154 | 8_4:-11719537 | Msa1313640:three_prime_UTR |
CTTGTTGAGGATTATTGAAT+TGG | 0.287471 | 8_4:+11720340 | None:intergenic |
CTTGGTAACATTATCAACTA+TGG | 0.291412 | 8_4:-11722276 | Msa1313640:five_prime_UTR |
GGTGGCGGCGGCGGCGGTGG+TGG | 0.299871 | 8_4:-11719709 | Msa1313640:CDS |
GGCGGCGGCGGCGGTGGTGG+TGG | 0.320299 | 8_4:-11719706 | Msa1313640:CDS |
CATGATCCATCAAGAGCATT+AGG | 0.324615 | 8_4:-11721304 | Msa1313640:CDS |
AAGAAACAAGAGATGATAAA+TGG | 0.329425 | 8_4:+11722195 | None:intergenic |
CATCTTATGATTACAACTTA+AGG | 0.346954 | 8_4:+11721843 | None:intergenic |
TGTTGTTGTGAGGGTAAAAT+TGG | 0.350354 | 8_4:+11720408 | None:intergenic |
AGGTTTGACAAGAGATTTCT+TGG | 0.358914 | 8_4:-11719677 | Msa1313640:CDS |
CAAGAGATTTCTTGGGGCTT+AGG | 0.363505 | 8_4:-11719669 | Msa1313640:CDS |
ACCAAACATTTCATCAAATT+GGG | 0.370739 | 8_4:+11719804 | None:intergenic |
ATGATCCATCAAGAGCATTA+GGG | 0.372273 | 8_4:-11721303 | Msa1313640:CDS |
GCCGCCGCCGCCACCGTCAT+TGG | 0.375307 | 8_4:+11719717 | None:intergenic |
AATGACGGTGGCGGCGGCGG+CGG | 0.384989 | 8_4:-11719715 | Msa1313640:CDS |
ATAGCTATAACCTCAGCATC+AGG | 0.391905 | 8_4:+11721511 | None:intergenic |
AATAATGTCTCTGGTAACTT+TGG | 0.395509 | 8_4:-11719964 | Msa1313640:CDS |
CTTCCACTACTTGTTGCTGT+TGG | 0.402652 | 8_4:+11721800 | None:intergenic |
GGTGAAGCTAGTGTTTCTTC+TGG | 0.407702 | 8_4:-11721748 | Msa1313640:CDS |
AAATCCCCTAATGCTCTTGA+TGG | 0.408372 | 8_4:+11721298 | None:intergenic |
GTTGCAGAAAGCAGCTCAAA+TGG | 0.410516 | 8_4:-11720061 | Msa1313640:CDS |
CATATTTGTGTGGCTATAGT+TGG | 0.415695 | 8_4:-11722305 | Msa1313640:five_prime_UTR |
TCTGAAATTCCACCTTGGCT+TGG | 0.415974 | 8_4:-11720261 | Msa1313640:CDS |
TGATGCACACAAGTTGGTTC+TGG | 0.417382 | 8_4:+11721325 | None:intergenic |
AGTGACATTCTAAGTATTGC+AGG | 0.426084 | 8_4:-11719634 | Msa1313640:CDS |
AATATGCTGTTCAATCTGAT+TGG | 0.427517 | 8_4:-11721204 | Msa1313640:CDS |
ACCAATGACGGTGGCGGCGG+CGG | 0.436786 | 8_4:-11719718 | Msa1313640:CDS |
ATTCTAAGTATTGCAGGGAT+TGG | 0.439295 | 8_4:-11719628 | Msa1313640:CDS |
ACATGAACAAGACTAGGGTT+AGG | 0.441835 | 8_4:+11720147 | None:intergenic |
ACCCAATTTGATGAAATGTT+TGG | 0.443043 | 8_4:-11719805 | Msa1313640:CDS |
ATTTGTGAGATCTGCAACAA+AGG | 0.447156 | 8_4:-11721454 | Msa1313640:CDS |
GAAAACAAACCTGGGTTACC+AGG | 0.448053 | 8_4:+11721628 | None:intergenic |
GTTCTTTGCTTCAACTTCCA+TGG | 0.449598 | 8_4:+11721382 | None:intergenic |
ACAAAACTTGTCTCTTGGGT+TGG | 0.456627 | 8_4:-11722153 | Msa1313640:five_prime_UTR |
TCAAACTTAACTTCTGCATC+TGG | 0.461869 | 8_4:-11721769 | Msa1313640:CDS |
GATTCTCTCAATAATGTCTC+TGG | 0.462323 | 8_4:-11719973 | Msa1313640:CDS |
GAGAGATTATCAACATTATG+TGG | 0.464689 | 8_4:+11720237 | None:intergenic |
GAAGTAGTTGCAGTAGTTGT+TGG | 0.470353 | 8_4:+11719892 | None:intergenic |
AAAGCCATCATGGCAAGGTT+AGG | 0.473421 | 8_4:-11719566 | Msa1313640:exon |
TGGGTCTTAATATTCATAGT+TGG | 0.475879 | 8_4:+11720003 | None:intergenic |
GAAGGTACTGTTTGGTAAGA+AGG | 0.479496 | 8_4:+11720108 | None:intergenic |
GGTGCAACAATGAATAGAAC+TGG | 0.479773 | 8_4:-11720039 | Msa1313640:CDS |
TAAAGAAAGGTCCTTCCCTT+CGG | 0.481026 | 8_4:+11719418 | None:intergenic |
TCAAGTTCAACAACAATACT+TGG | 0.481347 | 8_4:-11721689 | Msa1313640:CDS |
CCAGGAACATGAACAAGACT+AGG | 0.482912 | 8_4:+11720141 | None:intergenic |
GAACAAGAACAAGGACTAGT+TGG | 0.485981 | 8_4:+11722106 | None:intergenic |
ATCAATCTCAAAAGCCATCA+TGG | 0.486220 | 8_4:-11719576 | Msa1313640:CDS |
AACTCAGAAACAGTTTATGA+AGG | 0.491373 | 8_4:+11722080 | None:intergenic |
GGCGGTGGTGGTGGAAATGA+AGG | 0.496533 | 8_4:-11719697 | Msa1313640:CDS |
CATGAACAAGACTAGGGTTA+GGG | 0.500721 | 8_4:+11720148 | None:intergenic |
GGTTTGACAAGAGATTTCTT+GGG | 0.503476 | 8_4:-11719676 | Msa1313640:CDS |
CAGAAACAGTTTATGAAGGA+TGG | 0.504519 | 8_4:+11722084 | None:intergenic |
ACCACCAATGACGGTGGCGG+CGG | 0.504903 | 8_4:-11719721 | Msa1313640:CDS |
TGGACCTAACCTTGCCATGA+TGG | 0.507628 | 8_4:+11719562 | None:intergenic |
AGTATTGTTGTTGAACTTGA+GGG | 0.512238 | 8_4:+11721692 | None:intergenic |
CATTATTGAGAGAATCAACT+TGG | 0.518652 | 8_4:+11719980 | None:intergenic |
CTTAAGTTGTAATCATAAGA+TGG | 0.520015 | 8_4:-11721842 | Msa1313640:exon |
ATTTAGTTACCTTGAGAAGA+GGG | 0.520888 | 8_4:+11721129 | None:intergenic |
CAATTTGATGAAATGTTTGG+TGG | 0.530509 | 8_4:-11719802 | Msa1313640:CDS |
GAAAGCATGGTGAGAAGAAG+TGG | 0.533075 | 8_4:-11721249 | Msa1313640:CDS |
GCCGCCGCCACCGTCATTGG+TGG | 0.534618 | 8_4:+11719720 | None:intergenic |
AAGTATTGTTGTTGAACTTG+AGG | 0.537745 | 8_4:+11721691 | None:intergenic |
TTGCAGAAAGCAGCTCAAAT+GGG | 0.549522 | 8_4:-11720060 | Msa1313640:CDS |
TAAGAAGGAAGTGTGGGTCC+AGG | 0.551710 | 8_4:+11720123 | None:intergenic |
GTTGATATTTATCTTTCCGA+AGG | 0.552271 | 8_4:-11719434 | Msa1313640:three_prime_UTR |
TATTTATCTTTCCGAAGGGA+AGG | 0.556302 | 8_4:-11719429 | Msa1313640:three_prime_UTR |
AGGTTAGGTCCATATATACA+AGG | 0.558378 | 8_4:-11719551 | Msa1313640:exon |
AAATTATGAAAATCTTGTTG+AGG | 0.561862 | 8_4:+11720327 | None:intergenic |
AGAGCATTAGGGGATTTGAC+TGG | 0.562614 | 8_4:-11721292 | Msa1313640:CDS |
ACATTATGTGGGCCAAGCCA+AGG | 0.564626 | 8_4:+11720249 | None:intergenic |
ATTGAGAGAATCAACTTGGT+GGG | 0.565155 | 8_4:+11719984 | None:intergenic |
ACCTTTCTGAAATTCCACCT+TGG | 0.568922 | 8_4:-11720266 | Msa1313640:CDS |
GCCAAGGTGGAATTTCAGAA+AGG | 0.572630 | 8_4:+11720265 | None:intergenic |
GTTCCAACAGCAACAAGTAG+TGG | 0.573848 | 8_4:-11721803 | Msa1313640:CDS |
GATGAAGGTTGTTGTTGTGA+GGG | 0.574323 | 8_4:+11720399 | None:intergenic |
AATCTTCAACTTCACAGAAG+AGG | 0.577210 | 8_4:-11721415 | Msa1313640:CDS |
ATATTAGGATCATTAAAGAA+AGG | 0.582239 | 8_4:+11719405 | None:intergenic |
AATTTAGTTACCTTGAGAAG+AGG | 0.584975 | 8_4:+11721128 | None:intergenic |
TATTGAGAGAATCAACTTGG+TGG | 0.585481 | 8_4:+11719983 | None:intergenic |
ACAACCACCAATGACGGTGG+CGG | 0.585647 | 8_4:-11719724 | Msa1313640:CDS |
TGTGAGCTGAAGGTACTGTT+TGG | 0.586948 | 8_4:+11720100 | None:intergenic |
AGAAACCTCCCTGGTAACCC+AGG | 0.588025 | 8_4:-11721637 | Msa1313640:intron |
TCTAAAACAACCACCAATGA+CGG | 0.588296 | 8_4:-11719730 | Msa1313640:CDS |
GTGACATTCTAAGTATTGCA+GGG | 0.598839 | 8_4:-11719633 | Msa1313640:CDS |
TTGATATTTATCTTTCCGAA+GGG | 0.602656 | 8_4:-11719433 | Msa1313640:three_prime_UTR |
TGATGAAGGTTGTTGTTGTG+AGG | 0.603801 | 8_4:+11720398 | None:intergenic |
GTTTGACAAGAGATTTCTTG+GGG | 0.605661 | 8_4:-11719675 | Msa1313640:CDS |
TGATGAGAAGATGATGATGA+AGG | 0.612181 | 8_4:+11720384 | None:intergenic |
AGAGATTATCAACATTATGT+GGG | 0.612779 | 8_4:+11720238 | None:intergenic |
TGATCCATCAAGAGCATTAG+GGG | 0.622634 | 8_4:-11721302 | Msa1313640:CDS |
TCTCAAAAGCCATCATGGCA+AGG | 0.624497 | 8_4:-11719571 | Msa1313640:CDS |
TGGGTTGCTTCAAATCCAGA+AGG | 0.625506 | 8_4:+11719823 | None:intergenic |
TGTTTGGTAAGAAGGAAGTG+TGG | 0.629484 | 8_4:+11720116 | None:intergenic |
GTTTGGTAAGAAGGAAGTGT+GGG | 0.631533 | 8_4:+11720117 | None:intergenic |
CAGGAACATGAACAAGACTA+GGG | 0.634110 | 8_4:+11720142 | None:intergenic |
ACTGTGGAACCCTCTTCTCA+AGG | 0.634375 | 8_4:-11721138 | Msa1313640:intron |
AGAATGTCACTATGTGACAA+TGG | 0.635720 | 8_4:+11719646 | None:intergenic |
GAAGAGGTCATAATTTACCA+TGG | 0.635939 | 8_4:-11721399 | Msa1313640:CDS |
TAGCTATAACCTCAGCATCA+GGG | 0.639613 | 8_4:+11721512 | None:intergenic |
TGAAGGATGGAACAAGAACA+AGG | 0.641787 | 8_4:+11722097 | None:intergenic |
GGATCATGATGCACACAAGT+TGG | 0.642093 | 8_4:+11721319 | None:intergenic |
AAAACAAACCTGGGTTACCA+GGG | 0.660704 | 8_4:+11721629 | None:intergenic |
ACAAACCTGGGTTACCAGGG+AGG | 0.662065 | 8_4:+11721632 | None:intergenic |
AAAACAACCACCAATGACGG+TGG | 0.670222 | 8_4:-11719727 | Msa1313640:CDS |
GTAGCTGACATGTGAGCTGA+AGG | 0.671459 | 8_4:+11720090 | None:intergenic |
AAAGCTCATTCCAAAACATG+TGG | 0.678165 | 8_4:-11721181 | Msa1313640:CDS |
TTATGTGGGCCAAGCCAAGG+TGG | 0.692215 | 8_4:+11720252 | None:intergenic |
GGTTAGGTCCATATATACAA+GGG | 0.692410 | 8_4:-11719550 | Msa1313640:exon |
AGAGAATATAGATGTGACTG+TGG | 0.703138 | 8_4:-11721154 | Msa1313640:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTTGATAAACATATTATTAA+TGG | - | chr8_4:11720196-11720215 | Msa1313640:CDS | 10.0% |
!! | TTGATAAACATATTATTAAT+GGG | - | chr8_4:11720197-11720216 | Msa1313640:CDS | 10.0% |
!! | TTAATTTCATTCATTTATGA+AGG | - | chr8_4:11720709-11720728 | Msa1313640:intron | 15.0% |
!!! | ATTTTGATTCTTTTTCATTT+TGG | - | chr8_4:11722288-11722307 | Msa1313640:five_prime_UTR | 15.0% |
!! | TATGAACAAAAATATAGACT+TGG | + | chr8_4:11719448-11719467 | None:intergenic | 20.0% |
!!! | TATTTTTGTTCATATTTGTG+TGG | - | chr8_4:11719454-11719473 | Msa1313640:three_prime_UTR | 20.0% |
!!! | ATATGTTGGTAATGTTTTTA+TGG | + | chr8_4:11719835-11719854 | None:intergenic | 20.0% |
!! | AACAAAACAAAACAAAAAGA+AGG | + | chr8_4:11720172-11720191 | None:intergenic | 20.0% |
!! | CACATACATCATTAATTAAA+TGG | + | chr8_4:11720845-11720864 | None:intergenic | 20.0% |
!! | CATTAAAAAATTTCCTTACT+AGG | + | chr8_4:11721068-11721087 | None:intergenic | 20.0% |
!! | AAGACAAATAGTCTATTATT+AGG | + | chr8_4:11721096-11721115 | None:intergenic | 20.0% |
!! | AAATTATGAAAATCTTGTTG+AGG | + | chr8_4:11721445-11721464 | None:intergenic | 20.0% |
!! | ATATATATCCCTTGTATATA+TGG | + | chr8_4:11722230-11722249 | None:intergenic | 20.0% |
!! | TATACAAGGGATATATATTA+TGG | - | chr8_4:11722232-11722251 | Msa1313640:five_prime_UTR | 20.0% |
!!! | GGATATATATTATGGATTTT+TGG | - | chr8_4:11722240-11722259 | Msa1313640:five_prime_UTR | 20.0% |
! | AAGAAACAAGAGATGATAAA+TGG | + | chr8_4:11719577-11719596 | None:intergenic | 25.0% |
! | AAAAAACAAAACTTGTCTCT+TGG | - | chr8_4:11719611-11719630 | Msa1313640:CDS | 25.0% |
! | AAAAACAAAACTTGTCTCTT+GGG | - | chr8_4:11719612-11719631 | Msa1313640:CDS | 25.0% |
!!! | GTTTTTTTGGTGATATAGTT+TGG | + | chr8_4:11719644-11719663 | None:intergenic | 25.0% |
!! | TTGTGTTCTTTTTCTGTTTT+TGG | - | chr8_4:11719784-11719803 | Msa1313640:CDS | 25.0% |
!!! | TCTTTGTGTTTTTGATATGT+TGG | + | chr8_4:11719849-11719868 | None:intergenic | 25.0% |
! | CAAAAACACAAAGATCTATA+TGG | - | chr8_4:11719855-11719874 | Msa1313640:CDS | 25.0% |
! | CATCTTATGATTACAACTTA+AGG | + | chr8_4:11719929-11719948 | None:intergenic | 25.0% |
!! | CTTAAGTTGTAATCATAAGA+TGG | - | chr8_4:11719927-11719946 | Msa1313640:CDS | 25.0% |
! | TGTAATCATAAGATGGTAAA+AGG | - | chr8_4:11719934-11719953 | Msa1313640:CDS | 25.0% |
!!! | TTTTTTTTCATTGGTTGAGT+TGG | + | chr8_4:11720111-11720130 | None:intergenic | 25.0% |
!!! | AGGTTTCTCTTTTTTTTCAT+TGG | + | chr8_4:11720120-11720139 | None:intergenic | 25.0% |
!!! | AATGGGTTTTTTTTGTTGTT+TGG | - | chr8_4:11720214-11720233 | Msa1313640:CDS | 25.0% |
!!! | TTTTTTGCTAGTAAACTCTT+TGG | + | chr8_4:11720288-11720307 | None:intergenic | 25.0% |
! | ATTTCATTCATTTATGAAGG+TGG | - | chr8_4:11720712-11720731 | Msa1313640:intron | 25.0% |
!! | TTTTTGCTTATAACAGTGAA+CGG | + | chr8_4:11720809-11720828 | None:intergenic | 25.0% |
! | TTGCTTATAATATTGATCAG+AGG | - | chr8_4:11720919-11720938 | Msa1313640:intron | 25.0% |
! | AGAATGGAATTAGTGATTAT+GGG | + | chr8_4:11721027-11721046 | None:intergenic | 25.0% |
! | AAGAATGGAATTAGTGATTA+TGG | + | chr8_4:11721028-11721047 | None:intergenic | 25.0% |
! | TAATCACTAATTCCATTCTT+TGG | - | chr8_4:11721028-11721047 | Msa1313640:intron | 25.0% |
! | AAAAAGTAAAGAGAGAGAAA+AGG | - | chr8_4:11721149-11721168 | Msa1313640:CDS | 25.0% |
!!! | GTTGCTCTTTTTTCAATAAT+GGG | + | chr8_4:11721468-11721487 | None:intergenic | 25.0% |
!!! | TGTTGCTCTTTTTTCAATAA+TGG | + | chr8_4:11721469-11721488 | None:intergenic | 25.0% |
! | AGAGATTATCAACATTATGT+GGG | + | chr8_4:11721534-11721553 | None:intergenic | 25.0% |
! | ACCAAACATTTCATCAAATT+GGG | + | chr8_4:11721968-11721987 | None:intergenic | 25.0% |
!!! | TTGATTCTTTTTCATTTTGG+TGG | - | chr8_4:11722291-11722310 | Msa1313640:five_prime_UTR | 25.0% |
! | TTGATATTTATCTTTCCGAA+GGG | - | chr8_4:11722336-11722355 | Msa1313640:five_prime_UTR | 25.0% |
! | CTTGGTAACATTATCAACTA+TGG | - | chr8_4:11719493-11719512 | Msa1313640:three_prime_UTR | 30.0% |
AACTCAGAAACAGTTTATGA+AGG | + | chr8_4:11719692-11719711 | None:intergenic | 30.0% | |
!!! | TTCTTTTTCTGTTTTTGGCA+AGG | - | chr8_4:11719789-11719808 | Msa1313640:CDS | 30.0% |
! | AGTATTGTTGTTGAACTTGA+GGG | + | chr8_4:11720080-11720099 | None:intergenic | 30.0% |
! | AAGTATTGTTGTTGAACTTG+AGG | + | chr8_4:11720081-11720100 | None:intergenic | 30.0% |
TCAAGTTCAACAACAATACT+TGG | - | chr8_4:11720080-11720099 | Msa1313640:CDS | 30.0% | |
AGAGTTTACTAGCAAAAAAC+AGG | - | chr8_4:11720289-11720308 | Msa1313640:CDS | 30.0% | |
AATATGCTGTTCAATCTGAT+TGG | - | chr8_4:11720565-11720584 | Msa1313640:intron | 30.0% | |
ATTTAGTTACCTTGAGAAGA+GGG | + | chr8_4:11720643-11720662 | None:intergenic | 30.0% | |
AATTTAGTTACCTTGAGAAG+AGG | + | chr8_4:11720644-11720663 | None:intergenic | 30.0% | |
!!! | TAGGTTTTGAATTGTATCCT+AGG | - | chr8_4:11720738-11720757 | Msa1313640:intron | 30.0% |
ACACACTTGATTTCTTACAT+TGG | - | chr8_4:11720967-11720986 | Msa1313640:intron | 30.0% | |
! | ATTCCATTCTTTGGAAAAAG+TGG | - | chr8_4:11721037-11721056 | Msa1313640:intron | 30.0% |
!!! | TTTCCACTTTTTCCAAAGAA+TGG | + | chr8_4:11721043-11721062 | None:intergenic | 30.0% |
AAAAGTGGAAATTCCTAGTA+AGG | - | chr8_4:11721052-11721071 | Msa1313640:intron | 30.0% | |
! | TTTATGATGAGTTTTGCAGA+AGG | - | chr8_4:11721260-11721279 | Msa1313640:CDS | 30.0% |
! | TTATGATGAGTTTTGCAGAA+GGG | - | chr8_4:11721261-11721280 | Msa1313640:CDS | 30.0% |
CTTGTTGAGGATTATTGAAT+TGG | + | chr8_4:11721432-11721451 | None:intergenic | 30.0% | |
GAGAGATTATCAACATTATG+TGG | + | chr8_4:11721535-11721554 | None:intergenic | 30.0% | |
TGGGTCTTAATATTCATAGT+TGG | + | chr8_4:11721769-11721788 | None:intergenic | 30.0% | |
CATTATTGAGAGAATCAACT+TGG | + | chr8_4:11721792-11721811 | None:intergenic | 30.0% | |
AATAATGTCTCTGGTAACTT+TGG | - | chr8_4:11721805-11721824 | Msa1313640:CDS | 30.0% | |
ACCCAATTTGATGAAATGTT+TGG | - | chr8_4:11721964-11721983 | Msa1313640:five_prime_UTR | 30.0% | |
CACCAAACATTTCATCAAAT+TGG | + | chr8_4:11721969-11721988 | None:intergenic | 30.0% | |
CAATTTGATGAAATGTTTGG+TGG | - | chr8_4:11721967-11721986 | Msa1313640:five_prime_UTR | 30.0% | |
GTTGATATTTATCTTTCCGA+AGG | - | chr8_4:11722335-11722354 | Msa1313640:five_prime_UTR | 30.0% | |
CATATTTGTGTGGCTATAGT+TGG | - | chr8_4:11719464-11719483 | Msa1313640:three_prime_UTR | 35.0% | |
! | GGCTATAGTTGGATTTTTCT+TGG | - | chr8_4:11719475-11719494 | Msa1313640:three_prime_UTR | 35.0% |
!!! | CAAGGACTAGTTGGTTTTTT+TGG | + | chr8_4:11719657-11719676 | None:intergenic | 35.0% |
CAGAAACAGTTTATGAAGGA+TGG | + | chr8_4:11719688-11719707 | None:intergenic | 35.0% | |
!!! | GGTTTTGTTCTAGAAAGCTA+AGG | + | chr8_4:11719908-11719927 | None:intergenic | 35.0% |
TCAAACTTAACTTCTGCATC+TGG | - | chr8_4:11720000-11720019 | Msa1313640:CDS | 35.0% | |
TCTGGTAACAGAACTGAAAT+TGG | - | chr8_4:11720039-11720058 | Msa1313640:CDS | 35.0% | |
!!! | TTTTTCATTGGTTGAGTTGG+TGG | + | chr8_4:11720108-11720127 | None:intergenic | 35.0% |
AAAAAAAAGAGAAACCTCCC+TGG | - | chr8_4:11720123-11720142 | Msa1313640:CDS | 35.0% | |
AGGTTGTTGAAAACAAACCT+GGG | + | chr8_4:11720152-11720171 | None:intergenic | 35.0% | |
AAGGTTGTTGAAAACAAACC+TGG | + | chr8_4:11720153-11720172 | None:intergenic | 35.0% | |
ATTTGTGAGATCTGCAACAA+AGG | - | chr8_4:11720315-11720334 | Msa1313640:CDS | 35.0% | |
AATCTTCAACTTCACAGAAG+AGG | - | chr8_4:11720354-11720373 | Msa1313640:CDS | 35.0% | |
GAAGAGGTCATAATTTACCA+TGG | - | chr8_4:11720370-11720389 | Msa1313640:CDS | 35.0% | |
!! | ATGATCCATCAAGAGCATTA+GGG | - | chr8_4:11720466-11720485 | Msa1313640:CDS | 35.0% |
AAAGCTCATTCCAAAACATG+TGG | - | chr8_4:11720588-11720607 | Msa1313640:intron | 35.0% | |
AGAGAATATAGATGTGACTG+TGG | - | chr8_4:11720615-11720634 | Msa1313640:intron | 35.0% | |
TCATTTATGAAGGTGGTCAT+AGG | - | chr8_4:11720719-11720738 | Msa1313640:intron | 35.0% | |
! | ATTGTATCCTAGGTTGACTT+TGG | - | chr8_4:11720748-11720767 | Msa1313640:intron | 35.0% |
TGTTGTTGTGAGGGTAAAAT+TGG | + | chr8_4:11721364-11721383 | None:intergenic | 35.0% | |
! | TGATGAGAAGATGATGATGA+AGG | + | chr8_4:11721388-11721407 | None:intergenic | 35.0% |
ATTGAGAGAATCAACTTGGT+GGG | + | chr8_4:11721788-11721807 | None:intergenic | 35.0% | |
TATTGAGAGAATCAACTTGG+TGG | + | chr8_4:11721789-11721808 | None:intergenic | 35.0% | |
GATTCTCTCAATAATGTCTC+TGG | - | chr8_4:11721796-11721815 | Msa1313640:CDS | 35.0% | |
! | TTTTCTTCTTCATCTCCTTC+TGG | - | chr8_4:11721931-11721950 | Msa1313640:five_prime_UTR | 35.0% |
! | TCTAAAACAACCACCAATGA+CGG | - | chr8_4:11722039-11722058 | Msa1313640:five_prime_UTR | 35.0% |
AGGTTTGACAAGAGATTTCT+TGG | - | chr8_4:11722092-11722111 | Msa1313640:five_prime_UTR | 35.0% | |
GGTTTGACAAGAGATTTCTT+GGG | - | chr8_4:11722093-11722112 | Msa1313640:five_prime_UTR | 35.0% | |
GTTTGACAAGAGATTTCTTG+GGG | - | chr8_4:11722094-11722113 | Msa1313640:five_prime_UTR | 35.0% | |
AGAATGTCACTATGTGACAA+TGG | + | chr8_4:11722126-11722145 | None:intergenic | 35.0% | |
! | AGTGACATTCTAAGTATTGC+AGG | - | chr8_4:11722135-11722154 | Msa1313640:five_prime_UTR | 35.0% |
! | GTGACATTCTAAGTATTGCA+GGG | - | chr8_4:11722136-11722155 | Msa1313640:five_prime_UTR | 35.0% |
! | ATTCTAAGTATTGCAGGGAT+TGG | - | chr8_4:11722141-11722160 | Msa1313640:five_prime_UTR | 35.0% |
ATCAATCTCAAAAGCCATCA+TGG | - | chr8_4:11722193-11722212 | Msa1313640:five_prime_UTR | 35.0% | |
AGGTTAGGTCCATATATACA+AGG | - | chr8_4:11722218-11722237 | Msa1313640:five_prime_UTR | 35.0% | |
GGTTAGGTCCATATATACAA+GGG | - | chr8_4:11722219-11722238 | Msa1313640:five_prime_UTR | 35.0% | |
TATTTATCTTTCCGAAGGGA+AGG | - | chr8_4:11722340-11722359 | Msa1313640:five_prime_UTR | 35.0% | |
ACAAAACTTGTCTCTTGGGT+TGG | - | chr8_4:11719616-11719635 | Msa1313640:CDS | 40.0% | |
! | GAACAAGAACAAGGACTAGT+TGG | + | chr8_4:11719666-11719685 | None:intergenic | 40.0% |
TGAAGGATGGAACAAGAACA+AGG | + | chr8_4:11719675-11719694 | None:intergenic | 40.0% | |
AAAACAAACCTGGGTTACCA+GGG | + | chr8_4:11720143-11720162 | None:intergenic | 40.0% | |
TAGCTATAACCTCAGCATCA+GGG | + | chr8_4:11720260-11720279 | None:intergenic | 40.0% | |
ATAGCTATAACCTCAGCATC+AGG | + | chr8_4:11720261-11720280 | None:intergenic | 40.0% | |
GTTCTTTGCTTCAACTTCCA+TGG | + | chr8_4:11720390-11720409 | None:intergenic | 40.0% | |
!! | CATGATCCATCAAGAGCATT+AGG | - | chr8_4:11720465-11720484 | Msa1313640:CDS | 40.0% |
!! | TGATCCATCAAGAGCATTAG+GGG | - | chr8_4:11720467-11720486 | Msa1313640:CDS | 40.0% |
AAATCCCCTAATGCTCTTGA+TGG | + | chr8_4:11720474-11720493 | None:intergenic | 40.0% | |
! | AAGCACTTTTCCAGAAAGCA+TGG | - | chr8_4:11720507-11720526 | Msa1313640:intron | 40.0% |
! | TTCTCTAGTGCCACATGTTT+TGG | + | chr8_4:11720601-11720620 | None:intergenic | 40.0% |
TTATGCACCAAAGTCAACCT+AGG | + | chr8_4:11720758-11720777 | None:intergenic | 40.0% | |
! | GATGAAGGTTGTTGTTGTGA+GGG | + | chr8_4:11721373-11721392 | None:intergenic | 40.0% |
! | TGATGAAGGTTGTTGTTGTG+AGG | + | chr8_4:11721374-11721393 | None:intergenic | 40.0% |
!! | ACCTTTCTGAAATTCCACCT+TGG | - | chr8_4:11721503-11721522 | Msa1313640:CDS | 40.0% |
CATGAACAAGACTAGGGTTA+GGG | + | chr8_4:11721624-11721643 | None:intergenic | 40.0% | |
ACATGAACAAGACTAGGGTT+AGG | + | chr8_4:11721625-11721644 | None:intergenic | 40.0% | |
CAGGAACATGAACAAGACTA+GGG | + | chr8_4:11721630-11721649 | None:intergenic | 40.0% | |
! | GTTTGGTAAGAAGGAAGTGT+GGG | + | chr8_4:11721655-11721674 | None:intergenic | 40.0% |
TGTTTGGTAAGAAGGAAGTG+TGG | + | chr8_4:11721656-11721675 | None:intergenic | 40.0% | |
!! | GAAGGTACTGTTTGGTAAGA+AGG | + | chr8_4:11721664-11721683 | None:intergenic | 40.0% |
TTGCAGAAAGCAGCTCAAAT+GGG | - | chr8_4:11721709-11721728 | Msa1313640:CDS | 40.0% | |
GGTGCAACAATGAATAGAAC+TGG | - | chr8_4:11721730-11721749 | Msa1313640:CDS | 40.0% | |
GAAGTAGTTGCAGTAGTTGT+TGG | + | chr8_4:11721880-11721899 | None:intergenic | 40.0% | |
TAAAGAAAGGTCCTTCCCTT+CGG | + | chr8_4:11722354-11722373 | None:intergenic | 40.0% | |
GTTCCAACAGCAACAAGTAG+TGG | - | chr8_4:11719966-11719985 | Msa1313640:CDS | 45.0% | |
! | CTTCCACTACTTGTTGCTGT+TGG | + | chr8_4:11719972-11719991 | None:intergenic | 45.0% |
GGTGAAGCTAGTGTTTCTTC+TGG | - | chr8_4:11720021-11720040 | Msa1313640:CDS | 45.0% | |
GAAAACAAACCTGGGTTACC+AGG | + | chr8_4:11720144-11720163 | None:intergenic | 45.0% | |
!! | TTTTTCAGACCCTGATGCTG+AGG | - | chr8_4:11720248-11720267 | Msa1313640:CDS | 45.0% |
!! | TGATGCACACAAGTTGGTTC+TGG | + | chr8_4:11720447-11720466 | None:intergenic | 45.0% |
GGATCATGATGCACACAAGT+TGG | + | chr8_4:11720453-11720472 | None:intergenic | 45.0% | |
! | AGAGCATTAGGGGATTTGAC+TGG | - | chr8_4:11720477-11720496 | Msa1313640:CDS | 45.0% |
CTTCTTCTCACCATGCTTTC+TGG | + | chr8_4:11720520-11720539 | None:intergenic | 45.0% | |
! | GAAAGCATGGTGAGAAGAAG+TGG | - | chr8_4:11720520-11720539 | Msa1313640:intron | 45.0% |
GCCAAGGTGGAATTTCAGAA+AGG | + | chr8_4:11721507-11721526 | None:intergenic | 45.0% | |
! | TCTGAAATTCCACCTTGGCT+TGG | - | chr8_4:11721508-11721527 | Msa1313640:CDS | 45.0% |
CCAGGAACATGAACAAGACT+AGG | + | chr8_4:11721631-11721650 | None:intergenic | 45.0% | |
!! | CCTAGTCTTGTTCATGTTCC+TGG | - | chr8_4:11721628-11721647 | Msa1313640:intron | 45.0% |
!! | TGTGAGCTGAAGGTACTGTT+TGG | + | chr8_4:11721672-11721691 | None:intergenic | 45.0% |
GTTGCAGAAAGCAGCTCAAA+TGG | - | chr8_4:11721708-11721727 | Msa1313640:CDS | 45.0% | |
TGGGTTGCTTCAAATCCAGA+AGG | + | chr8_4:11721949-11721968 | None:intergenic | 45.0% | |
AAAACAACCACCAATGACGG+TGG | - | chr8_4:11722042-11722061 | Msa1313640:five_prime_UTR | 45.0% | |
CAAGAGATTTCTTGGGGCTT+AGG | - | chr8_4:11722100-11722119 | Msa1313640:five_prime_UTR | 45.0% | |
TCTCAAAAGCCATCATGGCA+AGG | - | chr8_4:11722198-11722217 | Msa1313640:five_prime_UTR | 45.0% | |
AAAGCCATCATGGCAAGGTT+AGG | - | chr8_4:11722203-11722222 | Msa1313640:five_prime_UTR | 45.0% | |
ACTGTGGAACCCTCTTCTCA+AGG | - | chr8_4:11720631-11720650 | Msa1313640:intron | 50.0% | |
ACATTATGTGGGCCAAGCCA+AGG | + | chr8_4:11721523-11721542 | None:intergenic | 50.0% | |
! | TAAGAAGGAAGTGTGGGTCC+AGG | + | chr8_4:11721649-11721668 | None:intergenic | 50.0% |
GTAGCTGACATGTGAGCTGA+AGG | + | chr8_4:11721682-11721701 | None:intergenic | 50.0% | |
TGGACCTAACCTTGCCATGA+TGG | + | chr8_4:11722210-11722229 | None:intergenic | 50.0% | |
AGAAACCTCCCTGGTAACCC+AGG | - | chr8_4:11720132-11720151 | Msa1313640:CDS | 55.0% | |
ACAAACCTGGGTTACCAGGG+AGG | + | chr8_4:11720140-11720159 | None:intergenic | 55.0% | |
TTATGTGGGCCAAGCCAAGG+TGG | + | chr8_4:11721520-11721539 | None:intergenic | 55.0% | |
ACAACCACCAATGACGGTGG+CGG | - | chr8_4:11722045-11722064 | Msa1313640:five_prime_UTR | 55.0% | |
!! | GGCGGTGGTGGTGGAAATGA+AGG | - | chr8_4:11722072-11722091 | Msa1313640:five_prime_UTR | 60.0% |
! | ACCACCAATGACGGTGGCGG+CGG | - | chr8_4:11722048-11722067 | Msa1313640:five_prime_UTR | 65.0% |
! | ACCAATGACGGTGGCGGCGG+CGG | - | chr8_4:11722051-11722070 | Msa1313640:five_prime_UTR | 70.0% |
GCCGCCGCCACCGTCATTGG+TGG | + | chr8_4:11722052-11722071 | None:intergenic | 75.0% | |
! | AATGACGGTGGCGGCGGCGG+CGG | - | chr8_4:11722054-11722073 | Msa1313640:five_prime_UTR | 75.0% |
! | GCCGCCGCCGCCACCGTCAT+TGG | + | chr8_4:11722055-11722074 | None:intergenic | 80.0% |
!! | GACGGTGGCGGCGGCGGCGG+TGG | - | chr8_4:11722057-11722076 | Msa1313640:five_prime_UTR | 90.0% |
!! | GGTGGCGGCGGCGGCGGTGG+TGG | - | chr8_4:11722060-11722079 | Msa1313640:five_prime_UTR | 90.0% |
!! | GGCGGCGGCGGCGGTGGTGG+TGG | - | chr8_4:11722063-11722082 | Msa1313640:five_prime_UTR | 90.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_4 | gene | 11719411 | 11722380 | 11719411 | ID=Msa1313640;Name=Msa1313640 |
chr8_4 | mRNA | 11719411 | 11722380 | 11719411 | ID=Msa1313640-mRNA-1;Parent=Msa1313640;Name=Msa1313640-mRNA-1;_AED=0.03;_eAED=0.03;_QI=535|1|1|1|1|1|3|156|516 |
chr8_4 | exon | 11719411 | 11720512 | 11719411 | ID=Msa1313640-mRNA-1:exon:4417;Parent=Msa1313640-mRNA-1 |
chr8_4 | exon | 11721139 | 11721535 | 11721139 | ID=Msa1313640-mRNA-1:exon:4416;Parent=Msa1313640-mRNA-1 |
chr8_4 | exon | 11721638 | 11722380 | 11721638 | ID=Msa1313640-mRNA-1:exon:4415;Parent=Msa1313640-mRNA-1 |
chr8_4 | five_prime_UTR | 11721846 | 11722380 | 11721846 | ID=Msa1313640-mRNA-1:five_prime_utr;Parent=Msa1313640-mRNA-1 |
chr8_4 | CDS | 11721638 | 11721845 | 11721638 | ID=Msa1313640-mRNA-1:cds;Parent=Msa1313640-mRNA-1 |
chr8_4 | CDS | 11721139 | 11721535 | 11721139 | ID=Msa1313640-mRNA-1:cds;Parent=Msa1313640-mRNA-1 |
chr8_4 | CDS | 11719567 | 11720512 | 11719567 | ID=Msa1313640-mRNA-1:cds;Parent=Msa1313640-mRNA-1 |
chr8_4 | three_prime_UTR | 11719411 | 11719566 | 11719411 | ID=Msa1313640-mRNA-1:three_prime_utr;Parent=Msa1313640-mRNA-1 |
Gene Sequence |
Protein sequence |