Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1313670 | sp|Q9LRW7|IDD11_ARATH | 47.312 | 558 | 177 | 16 | 15 | 516 | 17 | 513 | 1.72e-141 | 420 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1313670 | G7LHG9 | 91.221 | 524 | 31 | 5 | 1 | 516 | 1 | 517 | 0.0 | 863 |
Gene ID | Type | Classification |
---|---|---|
Msa1313670 | TF | C2H2 |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1313640 | Msa1313670 | 0.950194 | 2.725579e-108 | -8.615850e-47 |
Msa1179390 | Msa1313670 | 0.800434 | 1.443907e-48 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1313670 | MtrunA17_Chr8g0342421 | 91.221 | 524 | 31 | 5 | 1 | 516 | 1 | 517 | 0.0 | 863 |
Msa1313670 | MtrunA17_Chr2g0330171 | 57.795 | 526 | 136 | 22 | 18 | 516 | 1 | 467 | 3.19e-180 | 514 |
Msa1313670 | MtrunA17_Chr1g0151351 | 47.784 | 519 | 190 | 15 | 1 | 510 | 1 | 447 | 1.43e-133 | 395 |
Msa1313670 | MtrunA17_Chr4g0029521 | 45.049 | 515 | 212 | 15 | 29 | 506 | 8 | 488 | 1.29e-118 | 358 |
Msa1313670 | MtrunA17_Chr1g0185121 | 53.866 | 388 | 117 | 12 | 18 | 385 | 6 | 351 | 6.43e-117 | 352 |
Msa1313670 | MtrunA17_Chr1g0191991 | 61.218 | 312 | 87 | 7 | 58 | 356 | 61 | 351 | 7.20e-117 | 355 |
Msa1313670 | MtrunA17_Chr8g0373541 | 76.812 | 207 | 35 | 2 | 17 | 223 | 3 | 196 | 1.12e-116 | 354 |
Msa1313670 | MtrunA17_Chr7g0263941 | 55.220 | 364 | 116 | 10 | 57 | 409 | 31 | 358 | 1.41e-115 | 347 |
Msa1313670 | MtrunA17_Chr1g0181381 | 55.241 | 353 | 101 | 8 | 55 | 359 | 34 | 377 | 3.65e-115 | 349 |
Msa1313670 | MtrunA17_Chr4g0040571 | 86.471 | 170 | 21 | 1 | 54 | 223 | 35 | 202 | 6.27e-112 | 341 |
Msa1313670 | MtrunA17_Chr1g0199101 | 88.415 | 164 | 19 | 0 | 58 | 221 | 45 | 208 | 6.65e-111 | 340 |
Msa1313670 | MtrunA17_Chr1g0162971 | 55.132 | 341 | 91 | 9 | 60 | 354 | 41 | 365 | 1.46e-110 | 335 |
Msa1313670 | MtrunA17_Chr1g0163001 | 84.302 | 172 | 27 | 0 | 55 | 226 | 38 | 209 | 2.49e-109 | 335 |
Msa1313670 | MtrunA17_Chr7g0268961 | 52.991 | 351 | 120 | 9 | 70 | 403 | 32 | 354 | 5.87e-109 | 333 |
Msa1313670 | MtrunA17_Chr1g0210821 | 87.500 | 160 | 20 | 0 | 63 | 222 | 47 | 206 | 1.80e-107 | 332 |
Msa1313670 | MtrunA17_Chr2g0326381 | 68.981 | 216 | 56 | 4 | 59 | 265 | 31 | 244 | 2.20e-104 | 318 |
Msa1313670 | MtrunA17_Chr3g0141431 | 77.576 | 165 | 34 | 2 | 53 | 216 | 17 | 179 | 4.47e-95 | 295 |
Msa1313670 | MtrunA17_Chr2g0324991 | 87.786 | 131 | 16 | 0 | 71 | 201 | 3 | 133 | 1.37e-85 | 261 |
Msa1313670 | MtrunA17_Chr6g0479921 | 65.385 | 156 | 53 | 1 | 60 | 214 | 29 | 184 | 1.31e-74 | 243 |
Msa1313670 | MtrunA17_Chr8g0375521 | 64.103 | 156 | 54 | 2 | 60 | 213 | 27 | 182 | 2.46e-72 | 236 |
Msa1313670 | MtrunA17_Chr2g0320341 | 34.839 | 155 | 87 | 3 | 69 | 209 | 224 | 378 | 5.61e-25 | 107 |
Msa1313670 | MtrunA17_Chr3g0123941 | 35.897 | 156 | 92 | 3 | 65 | 212 | 113 | 268 | 1.17e-24 | 104 |
Msa1313670 | MtrunA17_Chr1g0200421 | 34.731 | 167 | 92 | 5 | 59 | 212 | 224 | 386 | 2.90e-24 | 105 |
Msa1313670 | MtrunA17_Chr5g0422571 | 35.484 | 155 | 87 | 6 | 83 | 226 | 108 | 260 | 5.84e-21 | 93.2 |
Msa1313670 | MtrunA17_Chr8g0382121 | 34.459 | 148 | 86 | 5 | 73 | 209 | 109 | 256 | 8.57e-21 | 93.2 |
Msa1313670 | MtrunA17_Chr7g0258011 | 33.333 | 159 | 86 | 6 | 83 | 223 | 183 | 339 | 7.83e-20 | 90.9 |
Msa1313670 | MtrunA17_Chr8g0352011 | 36.429 | 140 | 77 | 6 | 83 | 212 | 173 | 310 | 1.88e-19 | 89.7 |
Msa1313670 | MtrunA17_Chr1g0198651 | 33.333 | 156 | 89 | 6 | 83 | 225 | 109 | 262 | 2.14e-19 | 88.6 |
Msa1313670 | MtrunA17_Chr4g0053341 | 32.911 | 158 | 95 | 5 | 64 | 212 | 63 | 218 | 9.47e-19 | 85.5 |
Msa1313670 | MtrunA17_Chr1g0173841 | 34.286 | 140 | 80 | 5 | 83 | 212 | 222 | 359 | 1.76e-18 | 87.4 |
Msa1313670 | MtrunA17_Chr2g0328921 | 33.571 | 140 | 81 | 5 | 83 | 212 | 145 | 282 | 6.36e-18 | 84.7 |
Msa1313670 | MtrunA17_Chr4g0026521 | 34.286 | 140 | 80 | 5 | 83 | 212 | 125 | 262 | 9.53e-18 | 84.0 |
Msa1313670 | MtrunA17_Chr2g0321291 | 35.714 | 140 | 78 | 6 | 83 | 212 | 140 | 277 | 2.22e-17 | 83.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1313670 | AT3G13810.4 | 47.312 | 558 | 177 | 16 | 15 | 516 | 17 | 513 | 1.75e-142 | 420 |
Msa1313670 | AT3G13810.1 | 47.312 | 558 | 177 | 16 | 15 | 516 | 17 | 513 | 1.75e-142 | 420 |
Msa1313670 | AT3G13810.5 | 47.312 | 558 | 177 | 16 | 15 | 516 | 12 | 508 | 3.22e-142 | 419 |
Msa1313670 | AT3G13810.6 | 47.207 | 555 | 176 | 16 | 18 | 516 | 1 | 494 | 1.26e-140 | 414 |
Msa1313670 | AT1G55110.3 | 49.390 | 492 | 177 | 15 | 14 | 501 | 17 | 440 | 7.16e-133 | 393 |
Msa1313670 | AT1G55110.1 | 49.390 | 492 | 177 | 15 | 14 | 501 | 17 | 440 | 7.16e-133 | 393 |
Msa1313670 | AT1G55110.2 | 49.390 | 492 | 177 | 15 | 14 | 501 | 17 | 440 | 7.16e-133 | 393 |
Msa1313670 | AT3G13810.2 | 45.035 | 564 | 187 | 16 | 15 | 516 | 12 | 514 | 1.95e-128 | 384 |
Msa1313670 | AT3G13810.3 | 44.920 | 561 | 186 | 16 | 18 | 516 | 1 | 500 | 7.93e-127 | 379 |
Msa1313670 | AT5G44160.1 | 48.317 | 416 | 177 | 8 | 29 | 410 | 8 | 419 | 4.65e-113 | 343 |
Msa1313670 | AT1G03840.1 | 78.173 | 197 | 38 | 2 | 52 | 248 | 35 | 226 | 4.24e-112 | 342 |
Msa1313670 | AT5G66730.1 | 75.362 | 207 | 34 | 2 | 17 | 222 | 4 | 194 | 6.20e-112 | 341 |
Msa1313670 | AT3G50700.1 | 72.857 | 210 | 38 | 2 | 17 | 223 | 4 | 197 | 1.17e-111 | 339 |
Msa1313670 | AT4G02670.2 | 51.715 | 379 | 109 | 12 | 27 | 399 | 19 | 329 | 3.39e-109 | 331 |
Msa1313670 | AT4G02670.1 | 51.715 | 379 | 109 | 12 | 27 | 399 | 17 | 327 | 3.47e-109 | 331 |
Msa1313670 | AT1G14580.1 | 72.277 | 202 | 52 | 1 | 21 | 222 | 18 | 215 | 5.89e-109 | 332 |
Msa1313670 | AT1G14580.2 | 72.277 | 202 | 52 | 1 | 21 | 222 | 18 | 215 | 5.89e-109 | 332 |
Msa1313670 | AT2G02080.1 | 51.397 | 358 | 110 | 9 | 58 | 362 | 52 | 398 | 7.50e-109 | 334 |
Msa1313670 | AT2G02080.4 | 51.397 | 358 | 110 | 9 | 58 | 362 | 52 | 398 | 7.50e-109 | 334 |
Msa1313670 | AT2G02080.5 | 51.397 | 358 | 110 | 9 | 58 | 362 | 52 | 398 | 7.50e-109 | 334 |
Msa1313670 | AT2G02080.3 | 51.397 | 358 | 110 | 9 | 58 | 362 | 52 | 398 | 7.50e-109 | 334 |
Msa1313670 | AT3G45260.2 | 81.768 | 181 | 24 | 2 | 60 | 231 | 39 | 219 | 8.89e-109 | 331 |
Msa1313670 | AT3G45260.1 | 81.768 | 181 | 24 | 2 | 60 | 231 | 39 | 219 | 8.89e-109 | 331 |
Msa1313670 | AT1G14580.3 | 72.277 | 202 | 52 | 1 | 21 | 222 | 32 | 229 | 1.27e-108 | 332 |
Msa1313670 | AT1G03840.2 | 77.157 | 197 | 38 | 3 | 52 | 248 | 35 | 224 | 3.31e-108 | 332 |
Msa1313670 | AT2G02070.2 | 79.888 | 179 | 34 | 1 | 60 | 238 | 52 | 228 | 1.02e-105 | 328 |
Msa1313670 | AT2G02070.1 | 79.888 | 179 | 34 | 1 | 60 | 238 | 52 | 228 | 1.02e-105 | 328 |
Msa1313670 | AT5G03150.1 | 74.129 | 201 | 40 | 3 | 60 | 257 | 53 | 244 | 5.73e-105 | 323 |
Msa1313670 | AT5G44160.2 | 48.800 | 375 | 156 | 7 | 70 | 410 | 8 | 380 | 4.59e-104 | 318 |
Msa1313670 | AT5G60470.2 | 74.332 | 187 | 44 | 2 | 40 | 225 | 27 | 210 | 2.00e-102 | 315 |
Msa1313670 | AT5G60470.3 | 74.332 | 187 | 44 | 2 | 40 | 225 | 23 | 206 | 2.06e-102 | 315 |
Msa1313670 | AT5G60470.1 | 73.988 | 173 | 43 | 2 | 52 | 222 | 26 | 198 | 4.09e-94 | 294 |
Msa1313670 | AT2G02080.6 | 49.699 | 332 | 103 | 9 | 84 | 362 | 1 | 321 | 1.61e-93 | 292 |
Msa1313670 | AT2G02080.2 | 49.699 | 332 | 103 | 9 | 84 | 362 | 1 | 321 | 1.61e-93 | 292 |
Msa1313670 | AT1G25250.3 | 65.605 | 157 | 51 | 2 | 60 | 213 | 33 | 189 | 5.04e-74 | 239 |
Msa1313670 | AT1G68130.1 | 65.385 | 156 | 52 | 2 | 60 | 213 | 41 | 196 | 1.87e-73 | 239 |
Msa1313670 | AT2G01940.1 | 64.198 | 162 | 56 | 2 | 56 | 215 | 40 | 201 | 3.50e-73 | 239 |
Msa1313670 | AT1G25250.1 | 62.577 | 163 | 56 | 3 | 56 | 213 | 4 | 166 | 4.77e-71 | 231 |
Msa1313670 | AT2G01940.3 | 63.190 | 163 | 57 | 3 | 56 | 215 | 40 | 202 | 1.18e-69 | 230 |
Msa1313670 | AT1G68130.2 | 66.364 | 110 | 35 | 2 | 106 | 213 | 1 | 110 | 4.17e-47 | 167 |
Msa1313670 | AT1G25250.2 | 65.766 | 111 | 35 | 2 | 106 | 213 | 1 | 111 | 9.34e-47 | 165 |
Msa1313670 | AT2G01940.2 | 64.286 | 112 | 38 | 2 | 106 | 215 | 1 | 112 | 8.96e-46 | 164 |
Msa1313670 | AT1G34370.3 | 33.544 | 158 | 91 | 3 | 69 | 212 | 14 | 171 | 8.37e-24 | 101 |
Msa1313670 | AT1G34370.2 | 33.544 | 158 | 91 | 3 | 69 | 212 | 224 | 381 | 1.22e-23 | 104 |
Msa1313670 | AT1G34370.1 | 33.544 | 158 | 91 | 3 | 69 | 212 | 224 | 381 | 1.22e-23 | 104 |
Msa1313670 | AT5G22890.1 | 33.735 | 166 | 94 | 5 | 61 | 212 | 191 | 354 | 1.78e-23 | 102 |
Msa1313670 | AT1G13290.1 | 34.437 | 151 | 85 | 6 | 83 | 221 | 95 | 243 | 1.87e-19 | 89.4 |
Msa1313670 | AT1G08290.1 | 33.908 | 174 | 93 | 8 | 59 | 212 | 141 | 312 | 1.57e-18 | 87.4 |
Msa1313670 | AT1G51220.1 | 33.094 | 139 | 83 | 4 | 83 | 212 | 172 | 309 | 4.01e-18 | 86.3 |
Msa1313670 | AT3G20880.1 | 31.447 | 159 | 93 | 5 | 83 | 226 | 250 | 407 | 4.63e-18 | 87.0 |
Msa1313670 | AT3G57670.1 | 33.571 | 140 | 81 | 5 | 83 | 212 | 211 | 348 | 7.31e-18 | 85.9 |
Msa1313670 | AT1G34790.1 | 33.557 | 149 | 89 | 4 | 73 | 212 | 129 | 276 | 7.68e-17 | 81.6 |
Find 115 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCTTCTCACCATGCTTTC+TGG | 0.052883 | 8_4:+11740917 | None:intergenic |
CACCAAACATTTCATCAAAT+TGG | 0.116876 | 8_4:+11739467 | None:intergenic |
TTCTCTAGTGCCACATGTTT+TGG | 0.232714 | 8_4:+11740836 | None:intergenic |
TGTAATCATAAGATGGTAAA+AGG | 0.239938 | 8_4:-11741495 | Msa1313670:exon |
TCTGGTAACAGAACTGAAAT+TGG | 0.252456 | 8_4:-11741390 | Msa1313670:CDS |
GACGGTGGCGGCGGCGGCGG+CGG | 0.256319 | 8_4:-11739376 | Msa1313670:CDS |
ATATATATCCCTTGTATATA+TGG | 0.257880 | 8_4:+11739206 | None:intergenic |
CCTAGTCTTGTTCATGTTCC+TGG | 0.271217 | 8_4:-11739805 | Msa1313670:CDS |
TATACAAGGGATATATATTA+TGG | 0.284154 | 8_4:-11739201 | Msa1313670:three_prime_UTR |
CTTGTTGAGGATTATTGAAT+TGG | 0.287471 | 8_4:+11740004 | None:intergenic |
CTTGGTAACATTATCAACTA+TGG | 0.291412 | 8_4:-11741936 | Msa1313670:five_prime_UTR |
GCCGCCGCCGCCACCGTCAT+TGG | 0.303592 | 8_4:+11739381 | None:intergenic |
CATGATCCATCAAGAGCATT+AGG | 0.324615 | 8_4:-11740969 | Msa1313670:CDS |
AAGAAACAAGAGATGATAAA+TGG | 0.329425 | 8_4:+11741855 | None:intergenic |
CATCTTATGATTACAACTTA+AGG | 0.346954 | 8_4:+11741503 | None:intergenic |
TGTTGTTGTGAGGGTAAAAT+TGG | 0.350354 | 8_4:+11740072 | None:intergenic |
AGGTTTGACAAGAGATTTCT+TGG | 0.358914 | 8_4:-11739341 | Msa1313670:CDS |
AATGACGGTGGCGGCGGCGG+CGG | 0.359203 | 8_4:-11739379 | Msa1313670:CDS |
CAAGAGATTTCTTGGGGCTT+AGG | 0.363505 | 8_4:-11739333 | Msa1313670:CDS |
ACCAAACATTTCATCAAATT+GGG | 0.370739 | 8_4:+11739468 | None:intergenic |
ATGATCCATCAAGAGCATTA+GGG | 0.372273 | 8_4:-11740968 | Msa1313670:CDS |
ATAGCTATAACCTCAGCATC+AGG | 0.391905 | 8_4:+11741176 | None:intergenic |
AATAATGTCTCTGGTAACTT+TGG | 0.395509 | 8_4:-11739628 | Msa1313670:CDS |
CTTCCACTACTTGTTGCTGT+TGG | 0.402652 | 8_4:+11741460 | None:intergenic |
GGTGAAGCTAGTGTTTCTTC+TGG | 0.407702 | 8_4:-11741408 | Msa1313670:CDS |
AAATCCCCTAATGCTCTTGA+TGG | 0.408372 | 8_4:+11740963 | None:intergenic |
GTTGCAGAAAGCAGCTCAAA+TGG | 0.410516 | 8_4:-11739725 | Msa1313670:CDS |
CATATTTGTGTGGCTATAGT+TGG | 0.415695 | 8_4:-11741965 | Msa1313670:five_prime_UTR |
TCTGAAATTCCACCTTGGCT+TGG | 0.415974 | 8_4:-11739925 | Msa1313670:CDS |
TGATGCACACAAGTTGGTTC+TGG | 0.417382 | 8_4:+11740990 | None:intergenic |
AGTGACATTCTAAGTATTGC+AGG | 0.426084 | 8_4:-11739298 | Msa1313670:CDS |
AATATGCTGTTCAATCTGAT+TGG | 0.427517 | 8_4:-11740869 | Msa1313670:CDS |
ACCAATGACGGTGGCGGCGG+CGG | 0.436786 | 8_4:-11739382 | Msa1313670:CDS |
ATTCTAAGTATTGCAGGGAT+TGG | 0.439295 | 8_4:-11739292 | Msa1313670:CDS |
ACATGAACAAGACTAGGGTT+AGG | 0.441835 | 8_4:+11739811 | None:intergenic |
ACCCAATTTGATGAAATGTT+TGG | 0.443043 | 8_4:-11739469 | Msa1313670:CDS |
ATTTGTGAGATCTGCAACAA+AGG | 0.447156 | 8_4:-11741119 | Msa1313670:CDS |
GTTCTTTGCTTCAACTTCCA+TGG | 0.449598 | 8_4:+11741047 | None:intergenic |
GAAAACAAACCTGGGTTACC+AGG | 0.450492 | 8_4:+11741288 | None:intergenic |
ACAAAACTTGTCTCTTGGGT+TGG | 0.456627 | 8_4:-11741813 | Msa1313670:five_prime_UTR |
TCAAACTTAACTTCTGCATC+TGG | 0.461869 | 8_4:-11741429 | Msa1313670:CDS |
GATTCTCTCAATAATGTCTC+TGG | 0.462323 | 8_4:-11739637 | Msa1313670:CDS |
GAAGTAGTTGCAGTAGTTGT+TGG | 0.470353 | 8_4:+11739556 | None:intergenic |
AAAGCCATCATGGCAAGGTT+AGG | 0.473421 | 8_4:-11739230 | Msa1313670:exon |
TGGGTCTTAATATTCATAGT+TGG | 0.475879 | 8_4:+11739667 | None:intergenic |
GAAGGTACTGTTTGGTAAGA+AGG | 0.479496 | 8_4:+11739772 | None:intergenic |
GGTGCAACAATGAATAGAAC+TGG | 0.479773 | 8_4:-11739703 | Msa1313670:CDS |
TCAAGTTCAACAACAATACT+TGG | 0.481347 | 8_4:-11741349 | Msa1313670:CDS |
CCAGGAACATGAACAAGACT+AGG | 0.482912 | 8_4:+11739805 | None:intergenic |
GAACAAGAACAAGGACTAGT+TGG | 0.485981 | 8_4:+11741766 | None:intergenic |
ATCAATCTCAAAAGCCATCA+TGG | 0.486220 | 8_4:-11739240 | Msa1313670:CDS |
TCAAGAAAGGTCCTTCCCTT+CGG | 0.488461 | 8_4:+11739082 | None:intergenic |
AACTCAGAAACAGTTTATGA+AGG | 0.491373 | 8_4:+11741740 | None:intergenic |
CATGAACAAGACTAGGGTTA+GGG | 0.500721 | 8_4:+11739812 | None:intergenic |
GGTTTGACAAGAGATTTCTT+GGG | 0.503476 | 8_4:-11739340 | Msa1313670:CDS |
CAGAAACAGTTTATGAAGGA+TGG | 0.504519 | 8_4:+11741744 | None:intergenic |
ACCACCAATGACGGTGGCGG+CGG | 0.504903 | 8_4:-11739385 | Msa1313670:CDS |
TGGACCTAACCTTGCCATGA+TGG | 0.507628 | 8_4:+11739226 | None:intergenic |
AGTATTGTTGTTGAACTTGA+GGG | 0.512238 | 8_4:+11741352 | None:intergenic |
CATTATTGAGAGAATCAACT+TGG | 0.518652 | 8_4:+11739644 | None:intergenic |
CTTAAGTTGTAATCATAAGA+TGG | 0.520015 | 8_4:-11741502 | Msa1313670:exon |
GGCGGCGGTGGTGGAAATGA+AGG | 0.520549 | 8_4:-11739361 | Msa1313670:CDS |
ATTTAGTTACCTTGAGAAGA+GGG | 0.520888 | 8_4:+11740794 | None:intergenic |
GAGAGATGATCAACATTATG+TGG | 0.524492 | 8_4:+11739901 | None:intergenic |
CAATTTGATGAAATGTTTGG+TGG | 0.530509 | 8_4:-11739466 | Msa1313670:CDS |
GAAAGCATGGTGAGAAGAAG+TGG | 0.533075 | 8_4:-11740914 | Msa1313670:CDS |
GCCGCCGCCACCGTCATTGG+TGG | 0.534618 | 8_4:+11739384 | None:intergenic |
AAGTATTGTTGTTGAACTTG+AGG | 0.537745 | 8_4:+11741351 | None:intergenic |
TTGCAGAAAGCAGCTCAAAT+GGG | 0.549522 | 8_4:-11739724 | Msa1313670:CDS |
TAAGAAGGAAGTGTGGGTCC+AGG | 0.551710 | 8_4:+11739787 | None:intergenic |
GTTGATATTTATCTTTCCGA+AGG | 0.552271 | 8_4:-11739098 | Msa1313670:three_prime_UTR |
TATTTATCTTTCCGAAGGGA+AGG | 0.556302 | 8_4:-11739093 | Msa1313670:three_prime_UTR |
AGGTTAGGTCCATATATACA+AGG | 0.558378 | 8_4:-11739215 | Msa1313670:exon |
AAATTATGAAAATCTTGTTG+AGG | 0.561862 | 8_4:+11739991 | None:intergenic |
AGAGCATTAGGGGATTTGAC+TGG | 0.562614 | 8_4:-11740957 | Msa1313670:CDS |
ACATTATGTGGGCCAAGCCA+AGG | 0.564626 | 8_4:+11739913 | None:intergenic |
ATTGAGAGAATCAACTTGGT+GGG | 0.565155 | 8_4:+11739648 | None:intergenic |
ACCTTTCTGAAATTCCACCT+TGG | 0.568922 | 8_4:-11739930 | Msa1313670:CDS |
GCCAAGGTGGAATTTCAGAA+AGG | 0.572630 | 8_4:+11739929 | None:intergenic |
GTTCCAACAGCAACAAGTAG+TGG | 0.573848 | 8_4:-11741463 | Msa1313670:CDS |
GATGAAGGTTGTTGTTGTGA+GGG | 0.574323 | 8_4:+11740063 | None:intergenic |
AATCTTCAACTTCACAGAAG+AGG | 0.577210 | 8_4:-11741080 | Msa1313670:CDS |
ATATTAGGATCATTCAAGAA+AGG | 0.582239 | 8_4:+11739069 | None:intergenic |
AATTTAGTTACCTTGAGAAG+AGG | 0.584975 | 8_4:+11740793 | None:intergenic |
TATTGAGAGAATCAACTTGG+TGG | 0.585481 | 8_4:+11739647 | None:intergenic |
ACAACCACCAATGACGGTGG+CGG | 0.585647 | 8_4:-11739388 | Msa1313670:CDS |
TGTGAGCTGAAGGTACTGTT+TGG | 0.586948 | 8_4:+11739764 | None:intergenic |
AGAAACCTCCCTGGTAACCC+AGG | 0.588025 | 8_4:-11741297 | Msa1313670:intron |
TCTAAAACAACCACCAATGA+CGG | 0.588296 | 8_4:-11739394 | Msa1313670:CDS |
GTGACATTCTAAGTATTGCA+GGG | 0.598839 | 8_4:-11739297 | Msa1313670:CDS |
TTGATATTTATCTTTCCGAA+GGG | 0.602656 | 8_4:-11739097 | Msa1313670:three_prime_UTR |
TGATGAAGGTTGTTGTTGTG+AGG | 0.603801 | 8_4:+11740062 | None:intergenic |
GTTTGACAAGAGATTTCTTG+GGG | 0.605661 | 8_4:-11739339 | Msa1313670:CDS |
TGATGAGAAGATGATGATGA+AGG | 0.612181 | 8_4:+11740048 | None:intergenic |
TGATCCATCAAGAGCATTAG+GGG | 0.622634 | 8_4:-11740967 | Msa1313670:CDS |
TCTCAAAAGCCATCATGGCA+AGG | 0.624497 | 8_4:-11739235 | Msa1313670:CDS |
TGGGTTGCTTCAAATCCAGA+AGG | 0.625506 | 8_4:+11739487 | None:intergenic |
TGTTTGGTAAGAAGGAAGTG+TGG | 0.629484 | 8_4:+11739780 | None:intergenic |
GTTTGGTAAGAAGGAAGTGT+GGG | 0.631533 | 8_4:+11739781 | None:intergenic |
CAGGAACATGAACAAGACTA+GGG | 0.634110 | 8_4:+11739806 | None:intergenic |
ACTGTGGAACCCTCTTCTCA+AGG | 0.634375 | 8_4:-11740803 | Msa1313670:intron |
AGAATGTCACTATGTGACAA+TGG | 0.635720 | 8_4:+11739310 | None:intergenic |
GAAGAGGTCATAATTTACCA+TGG | 0.635939 | 8_4:-11741064 | Msa1313670:CDS |
TAGCTATAACCTCAGCATCA+GGG | 0.639613 | 8_4:+11741177 | None:intergenic |
AGAGATGATCAACATTATGT+GGG | 0.641603 | 8_4:+11739902 | None:intergenic |
TGAAGGATGGAACAAGAACA+AGG | 0.641787 | 8_4:+11741757 | None:intergenic |
GGATCATGATGCACACAAGT+TGG | 0.642093 | 8_4:+11740984 | None:intergenic |
AAAACAAACCTGGGTTACCA+GGG | 0.660704 | 8_4:+11741289 | None:intergenic |
ACAAACCTGGGTTACCAGGG+AGG | 0.662065 | 8_4:+11741292 | None:intergenic |
AAAACAACCACCAATGACGG+TGG | 0.670222 | 8_4:-11739391 | Msa1313670:CDS |
GTAGCTGACATGTGAGCTGA+AGG | 0.671459 | 8_4:+11739754 | None:intergenic |
AAAGCTCATTCCAAAACATG+TGG | 0.678165 | 8_4:-11740846 | Msa1313670:CDS |
TTATGTGGGCCAAGCCAAGG+TGG | 0.692215 | 8_4:+11739916 | None:intergenic |
GGTTAGGTCCATATATACAA+GGG | 0.692410 | 8_4:-11739214 | Msa1313670:exon |
AGAGAATATAGATGTGACTG+TGG | 0.703138 | 8_4:-11740819 | Msa1313670:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATTTTTATTCTTTTTCATTT+TGG | - | chr8_4:11741948-11741967 | Msa1313670:five_prime_UTR | 10.0% |
!! | TTTGATAAACATGTTATTAA+TGG | - | chr8_4:11739856-11739875 | Msa1313670:CDS | 15.0% |
!! | TTGATAAACATGTTATTAAT+GGG | - | chr8_4:11739857-11739876 | Msa1313670:CDS | 15.0% |
!! | TTAATTTCATTCATTTATGA+AGG | - | chr8_4:11740368-11740387 | Msa1313670:intron | 15.0% |
!! | TATGAACAAAAATATAGACT+TGG | + | chr8_4:11739112-11739131 | None:intergenic | 20.0% |
!!! | TATTTTTGTTCATATTTGTG+TGG | - | chr8_4:11739118-11739137 | Msa1313670:three_prime_UTR | 20.0% |
!!! | ATATGTTGGTAATGTTTTTA+TGG | + | chr8_4:11739499-11739518 | None:intergenic | 20.0% |
!! | AAACAAACAAAACAAAAAGA+AGG | + | chr8_4:11739833-11739852 | None:intergenic | 20.0% |
!!! | TAATGGGTTTTTTTTTTGTT+TGG | - | chr8_4:11739873-11739892 | Msa1313670:CDS | 20.0% |
!! | CATTAAAAAATTTCCTTACT+AGG | + | chr8_4:11740729-11740748 | None:intergenic | 20.0% |
!! | AAGACAAATAGTCTATTATT+AGG | + | chr8_4:11740757-11740776 | None:intergenic | 20.0% |
!! | AAATTATGAAAATCTTGTTG+AGG | + | chr8_4:11741105-11741124 | None:intergenic | 20.0% |
!! | ATATATATCCCTTGTATATA+TGG | + | chr8_4:11741890-11741909 | None:intergenic | 20.0% |
!! | TATACAAGGGATATATATTA+TGG | - | chr8_4:11741892-11741911 | Msa1313670:five_prime_UTR | 20.0% |
!!! | GGATATATATTATGGATTTT+TGG | - | chr8_4:11741900-11741919 | Msa1313670:five_prime_UTR | 20.0% |
!!! | TTTATTCTTTTTCATTTTGG+TGG | - | chr8_4:11741951-11741970 | Msa1313670:five_prime_UTR | 20.0% |
! | AAGAAACAAGAGATGATAAA+TGG | + | chr8_4:11739241-11739260 | None:intergenic | 25.0% |
! | AAAAAACAAAACTTGTCTCT+TGG | - | chr8_4:11739275-11739294 | Msa1313670:CDS | 25.0% |
! | AAAAACAAAACTTGTCTCTT+GGG | - | chr8_4:11739276-11739295 | Msa1313670:CDS | 25.0% |
!!! | GTTTTTTTGGTGATATAGTT+TGG | + | chr8_4:11739308-11739327 | None:intergenic | 25.0% |
!! | TTGTGTTCTTTTTCTGTTTT+TGG | - | chr8_4:11739448-11739467 | Msa1313670:CDS | 25.0% |
!!! | TCTTTGTGTTTTTGATATGT+TGG | + | chr8_4:11739513-11739532 | None:intergenic | 25.0% |
! | CAAAAACACAAAGATCTATA+TGG | - | chr8_4:11739519-11739538 | Msa1313670:CDS | 25.0% |
! | CATCTTATGATTACAACTTA+AGG | + | chr8_4:11739593-11739612 | None:intergenic | 25.0% |
!! | CTTAAGTTGTAATCATAAGA+TGG | - | chr8_4:11739591-11739610 | Msa1313670:CDS | 25.0% |
! | TGTAATCATAAGATGGTAAA+AGG | - | chr8_4:11739598-11739617 | Msa1313670:CDS | 25.0% |
!!! | TTTTTTTTCATTGGTTGAGT+TGG | + | chr8_4:11739775-11739794 | None:intergenic | 25.0% |
!!! | AGGTTTCTCTTTTTTTTCAT+TGG | + | chr8_4:11739784-11739803 | None:intergenic | 25.0% |
!!! | TTTTTTGCTAGTAAACTCTT+TGG | + | chr8_4:11739947-11739966 | None:intergenic | 25.0% |
! | ATTTCATTCATTTATGAAGG+TGG | - | chr8_4:11740371-11740390 | Msa1313670:intron | 25.0% |
!! | TTTTTGCTTATAACAGTGAA+CGG | + | chr8_4:11740468-11740487 | None:intergenic | 25.0% |
! | AGAATGGAATTAGTGATTAT+GGG | + | chr8_4:11740688-11740707 | None:intergenic | 25.0% |
! | AAGAATGGAATTAGTGATTA+TGG | + | chr8_4:11740689-11740708 | None:intergenic | 25.0% |
! | TAATCACTAATTCCATTCTT+TGG | - | chr8_4:11740689-11740708 | Msa1313670:intron | 25.0% |
! | AAAAAGTAAAGAGAGAGAAA+AGG | - | chr8_4:11740809-11740828 | Msa1313670:CDS | 25.0% |
!!! | GTTGCTCTTTTTTCAATAAT+GGG | + | chr8_4:11741128-11741147 | None:intergenic | 25.0% |
!!! | TGTTGCTCTTTTTTCAATAA+TGG | + | chr8_4:11741129-11741148 | None:intergenic | 25.0% |
! | ACCAAACATTTCATCAAATT+GGG | + | chr8_4:11741628-11741647 | None:intergenic | 25.0% |
! | TTGATATTTATCTTTCCGAA+GGG | - | chr8_4:11741996-11742015 | Msa1313670:five_prime_UTR | 25.0% |
! | CTTGGTAACATTATCAACTA+TGG | - | chr8_4:11739157-11739176 | Msa1313670:three_prime_UTR | 30.0% |
AACTCAGAAACAGTTTATGA+AGG | + | chr8_4:11739356-11739375 | None:intergenic | 30.0% | |
!!! | TTCTTTTTCTGTTTTTGGCA+AGG | - | chr8_4:11739453-11739472 | Msa1313670:CDS | 30.0% |
! | AGTATTGTTGTTGAACTTGA+GGG | + | chr8_4:11739744-11739763 | None:intergenic | 30.0% |
! | AAGTATTGTTGTTGAACTTG+AGG | + | chr8_4:11739745-11739764 | None:intergenic | 30.0% |
TCAAGTTCAACAACAATACT+TGG | - | chr8_4:11739744-11739763 | Msa1313670:CDS | 30.0% | |
AGAGTTTACTAGCAAAAAAC+AGG | - | chr8_4:11739948-11739967 | Msa1313670:CDS | 30.0% | |
AATATGCTGTTCAATCTGAT+TGG | - | chr8_4:11740224-11740243 | Msa1313670:intron | 30.0% | |
ATTTAGTTACCTTGAGAAGA+GGG | + | chr8_4:11740302-11740321 | None:intergenic | 30.0% | |
AATTTAGTTACCTTGAGAAG+AGG | + | chr8_4:11740303-11740322 | None:intergenic | 30.0% | |
!!! | TAGGTTTTGAATTGTATCCT+AGG | - | chr8_4:11740397-11740416 | Msa1313670:intron | 30.0% |
TTGCTTATAATAGTGATCAG+AGG | - | chr8_4:11740580-11740599 | Msa1313670:intron | 30.0% | |
ACACACTTGATTTCTTACAT+TGG | - | chr8_4:11740628-11740647 | Msa1313670:intron | 30.0% | |
! | ATTCCATTCTTTGGAAAAAG+TGG | - | chr8_4:11740698-11740717 | Msa1313670:intron | 30.0% |
!!! | TTTCCACTTTTTCCAAAGAA+TGG | + | chr8_4:11740704-11740723 | None:intergenic | 30.0% |
AAAAGTGGAAATTCCTAGTA+AGG | - | chr8_4:11740713-11740732 | Msa1313670:intron | 30.0% | |
! | TTTATGATGAGTTTTGCAGA+AGG | - | chr8_4:11740920-11740939 | Msa1313670:CDS | 30.0% |
! | TTATGATGAGTTTTGCAGAA+GGG | - | chr8_4:11740921-11740940 | Msa1313670:CDS | 30.0% |
CTTGTTGAGGATTATTGAAT+TGG | + | chr8_4:11741092-11741111 | None:intergenic | 30.0% | |
AGAGATGATCAACATTATGT+GGG | + | chr8_4:11741194-11741213 | None:intergenic | 30.0% | |
TGGGTCTTAATATTCATAGT+TGG | + | chr8_4:11741429-11741448 | None:intergenic | 30.0% | |
CATTATTGAGAGAATCAACT+TGG | + | chr8_4:11741452-11741471 | None:intergenic | 30.0% | |
AATAATGTCTCTGGTAACTT+TGG | - | chr8_4:11741465-11741484 | Msa1313670:CDS | 30.0% | |
ACCCAATTTGATGAAATGTT+TGG | - | chr8_4:11741624-11741643 | Msa1313670:five_prime_UTR | 30.0% | |
CACCAAACATTTCATCAAAT+TGG | + | chr8_4:11741629-11741648 | None:intergenic | 30.0% | |
CAATTTGATGAAATGTTTGG+TGG | - | chr8_4:11741627-11741646 | Msa1313670:five_prime_UTR | 30.0% | |
GTTGATATTTATCTTTCCGA+AGG | - | chr8_4:11741995-11742014 | Msa1313670:five_prime_UTR | 30.0% | |
CATATTTGTGTGGCTATAGT+TGG | - | chr8_4:11739128-11739147 | Msa1313670:three_prime_UTR | 35.0% | |
! | GGCTATAGTTGGATTTTTCT+TGG | - | chr8_4:11739139-11739158 | Msa1313670:three_prime_UTR | 35.0% |
!!! | CAAGGACTAGTTGGTTTTTT+TGG | + | chr8_4:11739321-11739340 | None:intergenic | 35.0% |
CAGAAACAGTTTATGAAGGA+TGG | + | chr8_4:11739352-11739371 | None:intergenic | 35.0% | |
!!! | GGTTTTGTTCTAGAAAGCTA+AGG | + | chr8_4:11739572-11739591 | None:intergenic | 35.0% |
TCAAACTTAACTTCTGCATC+TGG | - | chr8_4:11739664-11739683 | Msa1313670:CDS | 35.0% | |
TCTGGTAACAGAACTGAAAT+TGG | - | chr8_4:11739703-11739722 | Msa1313670:CDS | 35.0% | |
!!! | TTTTTCATTGGTTGAGTTGG+AGG | + | chr8_4:11739772-11739791 | None:intergenic | 35.0% |
AAAAAAAAGAGAAACCTCCC+TGG | - | chr8_4:11739787-11739806 | Msa1313670:CDS | 35.0% | |
AGAAGGTTGAAAACAAACCT+GGG | + | chr8_4:11739816-11739835 | None:intergenic | 35.0% | |
AAGAAGGTTGAAAACAAACC+TGG | + | chr8_4:11739817-11739836 | None:intergenic | 35.0% | |
ATTTGTGAGATCTGCAACAA+AGG | - | chr8_4:11739974-11739993 | Msa1313670:CDS | 35.0% | |
AATCTTCAACTTCACAGAAG+AGG | - | chr8_4:11740013-11740032 | Msa1313670:CDS | 35.0% | |
GAAGAGGTCATAATTTACCA+TGG | - | chr8_4:11740029-11740048 | Msa1313670:CDS | 35.0% | |
!! | ATGATCCATCAAGAGCATTA+GGG | - | chr8_4:11740125-11740144 | Msa1313670:CDS | 35.0% |
AAAGCTCATTCCAAAACATG+TGG | - | chr8_4:11740247-11740266 | Msa1313670:intron | 35.0% | |
AGAGAATATAGATGTGACTG+TGG | - | chr8_4:11740274-11740293 | Msa1313670:intron | 35.0% | |
TCATTTATGAAGGTGGTCAT+AGG | - | chr8_4:11740378-11740397 | Msa1313670:intron | 35.0% | |
! | ATTGTATCCTAGGTTGACTT+TGG | - | chr8_4:11740407-11740426 | Msa1313670:intron | 35.0% |
AAGTAAAGAGAGAGAAAAGG+AGG | - | chr8_4:11740812-11740831 | Msa1313670:CDS | 35.0% | |
AGTAAAGAGAGAGAAAAGGA+GGG | - | chr8_4:11740813-11740832 | Msa1313670:CDS | 35.0% | |
TGTTGTTGTGAGGGTAAAAT+TGG | + | chr8_4:11741024-11741043 | None:intergenic | 35.0% | |
! | TGATGAGAAGATGATGATGA+AGG | + | chr8_4:11741048-11741067 | None:intergenic | 35.0% |
GAGAGATGATCAACATTATG+TGG | + | chr8_4:11741195-11741214 | None:intergenic | 35.0% | |
ATTGAGAGAATCAACTTGGT+GGG | + | chr8_4:11741448-11741467 | None:intergenic | 35.0% | |
TATTGAGAGAATCAACTTGG+TGG | + | chr8_4:11741449-11741468 | None:intergenic | 35.0% | |
GATTCTCTCAATAATGTCTC+TGG | - | chr8_4:11741456-11741475 | Msa1313670:CDS | 35.0% | |
! | TTTTCTTCTTCATCTCCTTC+TGG | - | chr8_4:11741591-11741610 | Msa1313670:five_prime_UTR | 35.0% |
! | TCTAAAACAACCACCAATGA+CGG | - | chr8_4:11741699-11741718 | Msa1313670:five_prime_UTR | 35.0% |
AGGTTTGACAAGAGATTTCT+TGG | - | chr8_4:11741752-11741771 | Msa1313670:five_prime_UTR | 35.0% | |
GGTTTGACAAGAGATTTCTT+GGG | - | chr8_4:11741753-11741772 | Msa1313670:five_prime_UTR | 35.0% | |
GTTTGACAAGAGATTTCTTG+GGG | - | chr8_4:11741754-11741773 | Msa1313670:five_prime_UTR | 35.0% | |
AGAATGTCACTATGTGACAA+TGG | + | chr8_4:11741786-11741805 | None:intergenic | 35.0% | |
! | AGTGACATTCTAAGTATTGC+AGG | - | chr8_4:11741795-11741814 | Msa1313670:five_prime_UTR | 35.0% |
! | GTGACATTCTAAGTATTGCA+GGG | - | chr8_4:11741796-11741815 | Msa1313670:five_prime_UTR | 35.0% |
! | ATTCTAAGTATTGCAGGGAT+TGG | - | chr8_4:11741801-11741820 | Msa1313670:five_prime_UTR | 35.0% |
ATCAATCTCAAAAGCCATCA+TGG | - | chr8_4:11741853-11741872 | Msa1313670:five_prime_UTR | 35.0% | |
AGGTTAGGTCCATATATACA+AGG | - | chr8_4:11741878-11741897 | Msa1313670:five_prime_UTR | 35.0% | |
GGTTAGGTCCATATATACAA+GGG | - | chr8_4:11741879-11741898 | Msa1313670:five_prime_UTR | 35.0% | |
TATTTATCTTTCCGAAGGGA+AGG | - | chr8_4:11742000-11742019 | Msa1313670:five_prime_UTR | 35.0% | |
ACAAAACTTGTCTCTTGGGT+TGG | - | chr8_4:11739280-11739299 | Msa1313670:CDS | 40.0% | |
! | GAACAAGAACAAGGACTAGT+TGG | + | chr8_4:11739330-11739349 | None:intergenic | 40.0% |
TGAAGGATGGAACAAGAACA+AGG | + | chr8_4:11739339-11739358 | None:intergenic | 40.0% | |
AAAACAAACCTGGGTTACCA+GGG | + | chr8_4:11739807-11739826 | None:intergenic | 40.0% | |
TAGCTATAACCTCAGCATCA+GGG | + | chr8_4:11739919-11739938 | None:intergenic | 40.0% | |
ATAGCTATAACCTCAGCATC+AGG | + | chr8_4:11739920-11739939 | None:intergenic | 40.0% | |
GTTCTTTGCTTCAACTTCCA+TGG | + | chr8_4:11740049-11740068 | None:intergenic | 40.0% | |
!! | CATGATCCATCAAGAGCATT+AGG | - | chr8_4:11740124-11740143 | Msa1313670:CDS | 40.0% |
!! | TGATCCATCAAGAGCATTAG+GGG | - | chr8_4:11740126-11740145 | Msa1313670:CDS | 40.0% |
AAATCCCCTAATGCTCTTGA+TGG | + | chr8_4:11740133-11740152 | None:intergenic | 40.0% | |
! | AAGCACTTTTCCAGAAAGCA+TGG | - | chr8_4:11740166-11740185 | Msa1313670:intron | 40.0% |
! | TTCTCTAGTGCCACATGTTT+TGG | + | chr8_4:11740260-11740279 | None:intergenic | 40.0% |
TTATGCACCAAAGTCAACCT+AGG | + | chr8_4:11740417-11740436 | None:intergenic | 40.0% | |
! | GATGAAGGTTGTTGTTGTGA+GGG | + | chr8_4:11741033-11741052 | None:intergenic | 40.0% |
! | TGATGAAGGTTGTTGTTGTG+AGG | + | chr8_4:11741034-11741053 | None:intergenic | 40.0% |
!! | ACCTTTCTGAAATTCCACCT+TGG | - | chr8_4:11741163-11741182 | Msa1313670:CDS | 40.0% |
CATGAACAAGACTAGGGTTA+GGG | + | chr8_4:11741284-11741303 | None:intergenic | 40.0% | |
ACATGAACAAGACTAGGGTT+AGG | + | chr8_4:11741285-11741304 | None:intergenic | 40.0% | |
CAGGAACATGAACAAGACTA+GGG | + | chr8_4:11741290-11741309 | None:intergenic | 40.0% | |
! | GTTTGGTAAGAAGGAAGTGT+GGG | + | chr8_4:11741315-11741334 | None:intergenic | 40.0% |
TGTTTGGTAAGAAGGAAGTG+TGG | + | chr8_4:11741316-11741335 | None:intergenic | 40.0% | |
!! | GAAGGTACTGTTTGGTAAGA+AGG | + | chr8_4:11741324-11741343 | None:intergenic | 40.0% |
TTGCAGAAAGCAGCTCAAAT+GGG | - | chr8_4:11741369-11741388 | Msa1313670:CDS | 40.0% | |
GGTGCAACAATGAATAGAAC+TGG | - | chr8_4:11741390-11741409 | Msa1313670:CDS | 40.0% | |
GAAGTAGTTGCAGTAGTTGT+TGG | + | chr8_4:11741540-11741559 | None:intergenic | 40.0% | |
GTTCCAACAGCAACAAGTAG+TGG | - | chr8_4:11739630-11739649 | Msa1313670:CDS | 45.0% | |
! | CTTCCACTACTTGTTGCTGT+TGG | + | chr8_4:11739636-11739655 | None:intergenic | 45.0% |
GGTGAAGCTAGTGTTTCTTC+TGG | - | chr8_4:11739685-11739704 | Msa1313670:CDS | 45.0% | |
GAAAACAAACCTGGGTTACC+AGG | + | chr8_4:11739808-11739827 | None:intergenic | 45.0% | |
!! | TTTTTCAGACCCTGATGCTG+AGG | - | chr8_4:11739907-11739926 | Msa1313670:CDS | 45.0% |
!! | TGATGCACACAAGTTGGTTC+TGG | + | chr8_4:11740106-11740125 | None:intergenic | 45.0% |
GGATCATGATGCACACAAGT+TGG | + | chr8_4:11740112-11740131 | None:intergenic | 45.0% | |
! | AGAGCATTAGGGGATTTGAC+TGG | - | chr8_4:11740136-11740155 | Msa1313670:CDS | 45.0% |
CTTCTTCTCACCATGCTTTC+TGG | + | chr8_4:11740179-11740198 | None:intergenic | 45.0% | |
! | GAAAGCATGGTGAGAAGAAG+TGG | - | chr8_4:11740179-11740198 | Msa1313670:intron | 45.0% |
GCCAAGGTGGAATTTCAGAA+AGG | + | chr8_4:11741167-11741186 | None:intergenic | 45.0% | |
! | TCTGAAATTCCACCTTGGCT+TGG | - | chr8_4:11741168-11741187 | Msa1313670:CDS | 45.0% |
CCAGGAACATGAACAAGACT+AGG | + | chr8_4:11741291-11741310 | None:intergenic | 45.0% | |
!! | CCTAGTCTTGTTCATGTTCC+TGG | - | chr8_4:11741288-11741307 | Msa1313670:intron | 45.0% |
!! | TGTGAGCTGAAGGTACTGTT+TGG | + | chr8_4:11741332-11741351 | None:intergenic | 45.0% |
GTTGCAGAAAGCAGCTCAAA+TGG | - | chr8_4:11741368-11741387 | Msa1313670:CDS | 45.0% | |
TGGGTTGCTTCAAATCCAGA+AGG | + | chr8_4:11741609-11741628 | None:intergenic | 45.0% | |
AAAACAACCACCAATGACGG+TGG | - | chr8_4:11741702-11741721 | Msa1313670:five_prime_UTR | 45.0% | |
CAAGAGATTTCTTGGGGCTT+AGG | - | chr8_4:11741760-11741779 | Msa1313670:five_prime_UTR | 45.0% | |
TCTCAAAAGCCATCATGGCA+AGG | - | chr8_4:11741858-11741877 | Msa1313670:five_prime_UTR | 45.0% | |
AAAGCCATCATGGCAAGGTT+AGG | - | chr8_4:11741863-11741882 | Msa1313670:five_prime_UTR | 45.0% | |
TCAAGAAAGGTCCTTCCCTT+CGG | + | chr8_4:11742014-11742033 | None:intergenic | 45.0% | |
ACTGTGGAACCCTCTTCTCA+AGG | - | chr8_4:11740290-11740309 | Msa1313670:intron | 50.0% | |
ACATTATGTGGGCCAAGCCA+AGG | + | chr8_4:11741183-11741202 | None:intergenic | 50.0% | |
! | TAAGAAGGAAGTGTGGGTCC+AGG | + | chr8_4:11741309-11741328 | None:intergenic | 50.0% |
GTAGCTGACATGTGAGCTGA+AGG | + | chr8_4:11741342-11741361 | None:intergenic | 50.0% | |
TGGACCTAACCTTGCCATGA+TGG | + | chr8_4:11741870-11741889 | None:intergenic | 50.0% | |
AGAAACCTCCCTGGTAACCC+AGG | - | chr8_4:11739796-11739815 | Msa1313670:CDS | 55.0% | |
ACAAACCTGGGTTACCAGGG+AGG | + | chr8_4:11739804-11739823 | None:intergenic | 55.0% | |
TTATGTGGGCCAAGCCAAGG+TGG | + | chr8_4:11741180-11741199 | None:intergenic | 55.0% | |
ACAACCACCAATGACGGTGG+CGG | - | chr8_4:11741705-11741724 | Msa1313670:five_prime_UTR | 55.0% | |
! | ACCACCAATGACGGTGGCGG+CGG | - | chr8_4:11741708-11741727 | Msa1313670:five_prime_UTR | 65.0% |
!! | GGCGGCGGTGGTGGAAATGA+AGG | - | chr8_4:11741732-11741751 | Msa1313670:five_prime_UTR | 65.0% |
! | ACCAATGACGGTGGCGGCGG+CGG | - | chr8_4:11741711-11741730 | Msa1313670:five_prime_UTR | 70.0% |
GCCGCCGCCACCGTCATTGG+TGG | + | chr8_4:11741712-11741731 | None:intergenic | 75.0% | |
! | AATGACGGTGGCGGCGGCGG+CGG | - | chr8_4:11741714-11741733 | Msa1313670:five_prime_UTR | 75.0% |
! | GCCGCCGCCGCCACCGTCAT+TGG | + | chr8_4:11741715-11741734 | None:intergenic | 80.0% |
!! | GACGGTGGCGGCGGCGGCGG+CGG | - | chr8_4:11741717-11741736 | Msa1313670:five_prime_UTR | 90.0% |
!! | GGTGGCGGCGGCGGCGGCGG+TGG | - | chr8_4:11741720-11741739 | Msa1313670:five_prime_UTR | 95.0% |
! | GGCGGCGGCGGCGGCGGTGG+TGG | - | chr8_4:11741723-11741742 | Msa1313670:five_prime_UTR | 95.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_4 | gene | 11739075 | 11742040 | 11739075 | ID=Msa1313670;Name=Msa1313670 |
chr8_4 | mRNA | 11739075 | 11742040 | 11739075 | ID=Msa1313670-mRNA-1;Parent=Msa1313670;Name=Msa1313670-mRNA-1;_AED=0.01;_eAED=0.01;_QI=535|1|1|1|1|1|3|156|516 |
chr8_4 | exon | 11739075 | 11740176 | 11739075 | ID=Msa1313670-mRNA-1:exon:4414;Parent=Msa1313670-mRNA-1 |
chr8_4 | exon | 11740804 | 11741200 | 11740804 | ID=Msa1313670-mRNA-1:exon:4413;Parent=Msa1313670-mRNA-1 |
chr8_4 | exon | 11741298 | 11742040 | 11741298 | ID=Msa1313670-mRNA-1:exon:4412;Parent=Msa1313670-mRNA-1 |
chr8_4 | five_prime_UTR | 11741506 | 11742040 | 11741506 | ID=Msa1313670-mRNA-1:five_prime_utr;Parent=Msa1313670-mRNA-1 |
chr8_4 | CDS | 11741298 | 11741505 | 11741298 | ID=Msa1313670-mRNA-1:cds;Parent=Msa1313670-mRNA-1 |
chr8_4 | CDS | 11740804 | 11741200 | 11740804 | ID=Msa1313670-mRNA-1:cds;Parent=Msa1313670-mRNA-1 |
chr8_4 | CDS | 11739231 | 11740176 | 11739231 | ID=Msa1313670-mRNA-1:cds;Parent=Msa1313670-mRNA-1 |
chr8_4 | three_prime_UTR | 11739075 | 11739230 | 11739075 | ID=Msa1313670-mRNA-1:three_prime_utr;Parent=Msa1313670-mRNA-1 |
Gene Sequence |
Protein sequence |