Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1313960 | sp|P09186|LOX3_SOYBN | 58.137 | 848 | 184 | 7 | 9 | 686 | 11 | 857 | 0.0 | 928 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1313960 | G7LI99 | 73.949 | 856 | 53 | 7 | 1 | 686 | 1 | 856 | 0.0 | 1200 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1179270 | Msa1313960 | 0.829889 | 3.997547e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1313960 | MtrunA17_Chr8g0342881 | 73.949 | 856 | 53 | 7 | 1 | 686 | 1 | 856 | 0.0 | 1200 |
| Msa1313960 | MtrunA17_Chr2g0329911 | 57.008 | 849 | 193 | 9 | 9 | 686 | 14 | 861 | 0.0 | 902 |
| Msa1313960 | MtrunA17_Chr8g0342951 | 54.971 | 855 | 208 | 9 | 9 | 686 | 14 | 868 | 0.0 | 883 |
| Msa1313960 | MtrunA17_Chr8g0342971 | 53.775 | 861 | 215 | 11 | 7 | 686 | 12 | 870 | 0.0 | 860 |
| Msa1313960 | MtrunA17_Chr8g0342891 | 52.342 | 854 | 232 | 8 | 7 | 686 | 9 | 861 | 0.0 | 853 |
| Msa1313960 | MtrunA17_Chr8g0344211 | 52.982 | 855 | 225 | 8 | 9 | 686 | 14 | 868 | 0.0 | 846 |
| Msa1313960 | MtrunA17_Chr2g0329901 | 52.286 | 853 | 229 | 10 | 9 | 686 | 14 | 863 | 0.0 | 823 |
| Msa1313960 | MtrunA17_Chr5g0406871 | 51.724 | 870 | 233 | 14 | 1 | 686 | 1 | 867 | 0.0 | 813 |
| Msa1313960 | MtrunA17_Chr8g0343021 | 52.098 | 858 | 228 | 12 | 9 | 686 | 10 | 864 | 0.0 | 813 |
| Msa1313960 | MtrunA17_Chr8g0343031 | 52.558 | 860 | 221 | 13 | 9 | 686 | 11 | 865 | 0.0 | 807 |
| Msa1313960 | MtrunA17_Chr3g0120071 | 48.769 | 853 | 258 | 10 | 9 | 686 | 10 | 858 | 0.0 | 763 |
| Msa1313960 | MtrunA17_Chr1g0191921 | 49.419 | 860 | 234 | 13 | 9 | 686 | 18 | 858 | 0.0 | 754 |
| Msa1313960 | MtrunA17_Chr8g0342931 | 53.467 | 750 | 179 | 6 | 107 | 686 | 1 | 750 | 0.0 | 749 |
| Msa1313960 | MtrunA17_Chr8g0342901 | 47.190 | 854 | 237 | 14 | 10 | 686 | 12 | 828 | 0.0 | 709 |
| Msa1313960 | MtrunA17_Chr7g0272791 | 46.412 | 864 | 263 | 17 | 7 | 686 | 20 | 867 | 0.0 | 709 |
| Msa1313960 | MtrunA17_Chr1g0205611 | 43.894 | 868 | 280 | 15 | 8 | 686 | 7 | 856 | 0.0 | 671 |
| Msa1313960 | MtrunA17_Chr8g0343011 | 57.363 | 584 | 172 | 4 | 8 | 519 | 13 | 591 | 0.0 | 665 |
| Msa1313960 | MtrunA17_Chr8g0343011 | 51.643 | 213 | 55 | 1 | 522 | 686 | 653 | 865 | 5.08e-60 | 216 |
| Msa1313960 | MtrunA17_Chr8g0342921 | 57.119 | 590 | 180 | 6 | 2 | 519 | 7 | 595 | 0.0 | 663 |
| Msa1313960 | MtrunA17_Chr8g0342921 | 52.336 | 214 | 54 | 1 | 521 | 686 | 656 | 869 | 1.52e-60 | 218 |
| Msa1313960 | MtrunA17_Chr8g0343001 | 42.438 | 853 | 262 | 16 | 9 | 686 | 9 | 807 | 0.0 | 602 |
| Msa1313960 | MtrunA17_Chr8g0342981 | 42.509 | 821 | 259 | 13 | 50 | 686 | 32 | 823 | 0.0 | 581 |
| Msa1313960 | MtrunA17_Chr8g0342991 | 41.149 | 853 | 273 | 17 | 9 | 686 | 9 | 807 | 0.0 | 579 |
| Msa1313960 | MtrunA17_Chr8g0344201 | 35.697 | 832 | 352 | 15 | 32 | 685 | 100 | 926 | 2.50e-153 | 467 |
| Msa1313960 | MtrunA17_Chr3g0118651 | 34.296 | 831 | 348 | 21 | 39 | 686 | 88 | 903 | 2.96e-132 | 412 |
| Msa1313960 | MtrunA17_Chr8g0377101 | 33.782 | 817 | 350 | 19 | 52 | 686 | 109 | 916 | 6.48e-130 | 406 |
| Msa1313960 | MtrunA17_Chr3g0118641 | 33.890 | 838 | 342 | 24 | 39 | 686 | 87 | 902 | 7.36e-127 | 397 |
| Msa1313960 | MtrunA17_Chr4g0033171 | 35.452 | 708 | 275 | 16 | 156 | 686 | 23 | 725 | 3.43e-125 | 388 |
| Msa1313960 | MtrunA17_Chr3g0118621 | 33.333 | 834 | 358 | 21 | 33 | 686 | 50 | 865 | 1.03e-115 | 367 |
| Msa1313960 | MtrunA17_Chr8g0338451 | 30.498 | 823 | 363 | 22 | 41 | 669 | 43 | 850 | 1.13e-106 | 343 |
| Msa1313960 | MtrunA17_Chr4g0047281 | 34.323 | 539 | 267 | 12 | 48 | 519 | 102 | 620 | 1.08e-85 | 288 |
| Msa1313960 | MtrunA17_Chr4g0047281 | 35.065 | 231 | 98 | 2 | 503 | 685 | 668 | 894 | 1.96e-34 | 140 |
| Msa1313960 | MtrunA17_Chr8g0344241 | 40.695 | 403 | 98 | 6 | 424 | 686 | 60 | 461 | 5.42e-80 | 262 |
| Msa1313960 | MtrunA17_Chr8g0344241 | 45.833 | 72 | 33 | 1 | 252 | 323 | 9 | 74 | 1.11e-11 | 67.8 |
| Msa1313960 | MtrunA17_Chr6g0471951 | 34.211 | 266 | 105 | 4 | 280 | 514 | 11 | 237 | 2.07e-38 | 149 |
| Msa1313960 | MtrunA17_Chr6g0471951 | 22.159 | 176 | 88 | 3 | 521 | 647 | 305 | 480 | 5.25e-12 | 68.9 |
| Msa1313960 | MtrunA17_Chr7g0218231 | 71.154 | 52 | 15 | 0 | 460 | 511 | 29 | 80 | 4.02e-18 | 81.6 |
| Msa1313960 | MtrunA17_Chr4g0047271 | 43.333 | 90 | 51 | 0 | 596 | 685 | 2 | 91 | 9.57e-16 | 73.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1313960 | AT1G55020.1 | 47.430 | 856 | 256 | 12 | 9 | 686 | 20 | 859 | 0.0 | 739 |
| Msa1313960 | AT3G22400.1 | 41.542 | 869 | 301 | 18 | 9 | 686 | 34 | 886 | 0.0 | 616 |
| Msa1313960 | AT1G72520.1 | 34.310 | 819 | 355 | 14 | 45 | 686 | 114 | 926 | 8.44e-147 | 451 |
| Msa1313960 | AT1G17420.1 | 34.063 | 822 | 352 | 16 | 45 | 686 | 108 | 919 | 5.57e-144 | 443 |
| Msa1313960 | AT3G45140.1 | 33.698 | 822 | 345 | 21 | 45 | 686 | 95 | 896 | 3.94e-129 | 404 |
| Msa1313960 | AT1G67560.1 | 32.461 | 841 | 368 | 21 | 32 | 686 | 91 | 917 | 5.48e-120 | 380 |
| Msa1313960 | AT3G45140.2 | 32.852 | 761 | 321 | 18 | 106 | 686 | 4 | 754 | 1.65e-113 | 359 |
Find 136 sgRNAs with CRISPR-Local
Find 287 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATACACTTACTTCCTTTC+TGG | 0.051977 | 8_4:-12250420 | Msa1313960:CDS |
| CTTCATGCAGCTGTTAATTT+TGG | 0.103505 | 8_4:-12246468 | Msa1313960:CDS |
| TCCTCAGACTTTCTTGTTTA+CGG | 0.223712 | 8_4:-12249009 | Msa1313960:CDS |
| TTCACTTTGTTTGCAACTCT+TGG | 0.251738 | 8_4:-12250009 | Msa1313960:CDS |
| ATTCCAAGAGATGAAGCTTT+TGG | 0.274215 | 8_4:-12249042 | Msa1313960:CDS |
| TTAATTAGCTCTACTAAAAC+TGG | 0.280752 | 8_4:-12250377 | Msa1313960:CDS |
| TTCATCTGATGTGAAGTATA+TGG | 0.280760 | 8_4:+12246644 | None:intergenic |
| GATATACCTTGAATTACTTT+AGG | 0.297702 | 8_4:+12248772 | None:intergenic |
| GTTAAGCTCTATGTGCTCTT+TGG | 0.319451 | 8_4:+12247929 | None:intergenic |
| GATACACTTACTTCCTTTCT+GGG | 0.321649 | 8_4:-12250419 | Msa1313960:CDS |
| CTCCCAAAACTGACCCTTAT+CGG | 0.321970 | 8_4:+12249377 | None:intergenic |
| ATAGATTGCTCTTACATTGT+TGG | 0.322959 | 8_4:+12249943 | None:intergenic |
| GATAGCAACTTTGGAATTCC+TGG | 0.326663 | 8_4:-12250115 | Msa1313960:CDS |
| TTTGAATATGATAGCAACTT+TGG | 0.330629 | 8_4:-12250124 | Msa1313960:CDS |
| CAACTTCTTTCCACCAAGAT+TGG | 0.333148 | 8_4:+12246598 | None:intergenic |
| ACACAATAATTCCATATCTA+AGG | 0.334272 | 8_4:-12247745 | Msa1313960:CDS |
| TGATGGAACTTTAAAGCCTT+TGG | 0.342343 | 8_4:-12247663 | Msa1313960:CDS |
| TTATGATGTTTACAATGATT+TGG | 0.350830 | 8_4:-12249406 | Msa1313960:CDS |
| TATGATGTTTACAATGATTT+GGG | 0.361274 | 8_4:-12249405 | Msa1313960:CDS |
| TGGATGACTGATGAAGAATT+TGG | 0.366017 | 8_4:-12248475 | Msa1313960:CDS |
| ACACTGGTAAAGGACTAATT+TGG | 0.369984 | 8_4:+12248845 | None:intergenic |
| AATCGATCCAAACCCGTCTA+AGG | 0.370370 | 8_4:+12250445 | None:intergenic |
| AAGTGAATGGTTCCAACGTT+CGG | 0.370458 | 8_4:+12250025 | None:intergenic |
| GCACATAGAGCTTAACTTAG+AGG | 0.378467 | 8_4:-12247922 | Msa1313960:CDS |
| TCACTTTGTTTGCAACTCTT+GGG | 0.379476 | 8_4:-12250008 | Msa1313960:CDS |
| GGATGTAATAGTTTATAAAT+AGG | 0.382267 | 8_4:+12247173 | None:intergenic |
| GAAGGAAGAAGAAGGGTATA+AGG | 0.385576 | 8_4:+12245977 | None:intergenic |
| GAGTTTATTAGCCTTAGATA+TGG | 0.386116 | 8_4:+12247734 | None:intergenic |
| ATAGCAGCCTTCAAGAAGTT+TGG | 0.386166 | 8_4:-12246085 | Msa1313960:CDS |
| GATGGAGCCTTAGACGGGTT+TGG | 0.387904 | 8_4:-12250452 | Msa1313960:CDS |
| GAGCTCCTTCTCTCAGTGTT+AGG | 0.389477 | 8_4:+12249075 | None:intergenic |
| GCTTCAACACCTTCAATTGC+AGG | 0.390029 | 8_4:+12247575 | None:intergenic |
| TGCCCAAAAGCTTCATCTCT+TGG | 0.391374 | 8_4:+12249039 | None:intergenic |
| AGTGAATGGTTCCAACGTTC+GGG | 0.394410 | 8_4:+12250026 | None:intergenic |
| TCCCAAAACTGACCCTTATC+GGG | 0.397910 | 8_4:+12249378 | None:intergenic |
| CCTACACCTAAAGTAATTCA+AGG | 0.399993 | 8_4:-12248778 | Msa1313960:intron |
| CTGTTTGTTGCTATGACAAA+TGG | 0.404215 | 8_4:+12247215 | None:intergenic |
| CGAAGAAAATACGATCAGTT+TGG | 0.407190 | 8_4:+12249966 | None:intergenic |
| AGGGTATAAGGCATGCTAAC+TGG | 0.408059 | 8_4:+12245989 | None:intergenic |
| TTAGAGTTGAAAACGTTAAG+AGG | 0.411823 | 8_4:-12249471 | Msa1313960:CDS |
| TCAAAGCTATCAAATTCATT+TGG | 0.414285 | 8_4:+12248922 | None:intergenic |
| GATCCTACGAAGATTATTGA+TGG | 0.416017 | 8_4:-12250470 | Msa1313960:CDS |
| ATTAACAATTTGCCAACATT+GGG | 0.424393 | 8_4:-12250175 | Msa1313960:CDS |
| GTCTACTTGCCTGCAATTGA+AGG | 0.425065 | 8_4:-12247584 | Msa1313960:intron |
| TCAAATACAGATTGTATCAA+TGG | 0.425244 | 8_4:+12248958 | None:intergenic |
| AAGCTAGATAGTGCAGTCTA+TGG | 0.426953 | 8_4:-12247972 | Msa1313960:CDS |
| AAGTTCGCAGTATTATCATA+TGG | 0.427650 | 8_4:-12246503 | Msa1313960:CDS |
| GTAAGTCCTTCCTCACTTGA+AGG | 0.429028 | 8_4:+12245959 | None:intergenic |
| TCAAGCAATACTCTCTTAGA+TGG | 0.429874 | 8_4:+12245910 | None:intergenic |
| TTTGGAAGAGAGATCCTTGC+TGG | 0.443202 | 8_4:-12248457 | Msa1313960:CDS |
| TGATTTGGGTGACCCCGATA+AGG | 0.454794 | 8_4:-12249391 | Msa1313960:CDS |
| AATTAACAATTTGCCAACAT+TGG | 0.462154 | 8_4:-12250176 | Msa1313960:CDS |
| TTTAATATGAAACCTCCATA+TGG | 0.462246 | 8_4:+12246438 | None:intergenic |
| GATTTGGGTGACCCCGATAA+GGG | 0.463228 | 8_4:-12249390 | Msa1313960:intron |
| CTTCTTCCTTCAAGTGAGGA+AGG | 0.470217 | 8_4:-12245965 | Msa1313960:CDS |
| CTCTTAGATGGAGATACTGT+TGG | 0.471912 | 8_4:+12245922 | None:intergenic |
| ACGTTAAGAGGAGATGGAAC+GGG | 0.472601 | 8_4:-12249459 | Msa1313960:CDS |
| GTAACCGGGGAAGGGAAACT+TGG | 0.477053 | 8_4:-12250223 | Msa1313960:CDS |
| AAAAGAAGCTTACTTAAAAG+AGG | 0.479313 | 8_4:-12250200 | Msa1313960:CDS |
| ATCCTTGCTGGTGTAAATCC+TGG | 0.484850 | 8_4:-12248445 | Msa1313960:CDS |
| GTTTGTTTATCTCCCAATGT+TGG | 0.485044 | 8_4:+12250163 | None:intergenic |
| TCAGAAATCTTTAGAACTGA+TGG | 0.485324 | 8_4:-12248820 | Msa1313960:CDS |
| AAAGAGAAAGTGCTGAGTAT+TGG | 0.494358 | 8_4:-12246126 | Msa1313960:CDS |
| AAACTTCTTGAAGGCTGCTA+TGG | 0.496857 | 8_4:+12246087 | None:intergenic |
| TATTGAAAAGACATTCTTGT+GGG | 0.498429 | 8_4:-12247084 | Msa1313960:CDS |
| ATTTCTGATAACACTGGTAA+AGG | 0.499377 | 8_4:+12248835 | None:intergenic |
| GGAGATCTGAACTCCAATCT+TGG | 0.502362 | 8_4:-12246611 | Msa1313960:CDS |
| CATCCTCAAGGAGATCAATT+CGG | 0.504730 | 8_4:-12247620 | Msa1313960:CDS |
| AATTGATCTCCTTGAGGATG+TGG | 0.505930 | 8_4:+12247623 | None:intergenic |
| AATACCATCTGCATTTACTA+AGG | 0.507797 | 8_4:+12247106 | None:intergenic |
| CCTTGAATTACTTTAGGTGT+AGG | 0.510768 | 8_4:+12248778 | None:intergenic |
| CTATAGAAGACAAGTGGAGC+AGG | 0.512705 | 8_4:+12249498 | None:intergenic |
| TTGAAAACGTTAAGAGGAGA+TGG | 0.514600 | 8_4:-12249465 | Msa1313960:CDS |
| ATTATTGATGGAGCCTTAGA+CGG | 0.514899 | 8_4:-12250458 | Msa1313960:CDS |
| AATCATTGAGAAATAGAGTT+GGG | 0.519638 | 8_4:-12246012 | Msa1313960:CDS |
| TCTTAGATGGAGATACTGTT+GGG | 0.524153 | 8_4:+12245923 | None:intergenic |
| TAAAACTCTAGCTGAAATTG+AGG | 0.524618 | 8_4:-12246062 | Msa1313960:CDS |
| AAGGATGGTTCTTGAAGCAT+AGG | 0.529557 | 8_4:+12247697 | None:intergenic |
| AGAGTTGCAAACAAAGTGAA+TGG | 0.535558 | 8_4:+12250012 | None:intergenic |
| AAAAGACATTCTTGTGGGGA+GGG | 0.536208 | 8_4:-12247079 | Msa1313960:intron |
| TGGAGGCTGCGAATTAAGCC+AGG | 0.537129 | 8_4:+12248427 | None:intergenic |
| CAGCACTTTCTCTTTGTCCA+AGG | 0.538977 | 8_4:+12246134 | None:intergenic |
| TTATTGATGGAGCCTTAGAC+GGG | 0.543295 | 8_4:-12250457 | Msa1313960:CDS |
| ATGTGGAAGACTTAGCTCAA+TGG | 0.546020 | 8_4:+12247640 | None:intergenic |
| CACATAGAGCTTAACTTAGA+GGG | 0.548086 | 8_4:-12247921 | Msa1313960:CDS |
| CATCAAGAGTCAAGCTCACA+AGG | 0.548278 | 8_4:+12250053 | None:intergenic |
| CCTCACTTGAAGGAAGAAGA+AGG | 0.552977 | 8_4:+12245969 | None:intergenic |
| CTTTAGGTGTAGGAAACTTG+AGG | 0.557822 | 8_4:+12248788 | None:intergenic |
| GAAAAGACATTCTTGTGGGG+AGG | 0.560508 | 8_4:-12247080 | Msa1313960:CDS |
| TTTGGGAATGATAAGATCAA+AGG | 0.560979 | 8_4:-12250542 | Msa1313960:CDS |
| GTTGATGCAAAAGAATGTCT+TGG | 0.565743 | 8_4:-12250510 | Msa1313960:CDS |
| ATATTCAAATTCAATGCTGA+AGG | 0.568195 | 8_4:+12250138 | None:intergenic |
| ACAAATCGATCGACCCAGAA+AGG | 0.570019 | 8_4:+12250406 | None:intergenic |
| AAAACTCTAGCTGAAATTGA+GGG | 0.571260 | 8_4:-12246061 | Msa1313960:CDS |
| GATCTGAACTCCAATCTTGG+TGG | 0.574855 | 8_4:-12246608 | Msa1313960:CDS |
| GCTTCTGATGAGTACTACCT+TGG | 0.580781 | 8_4:-12246151 | Msa1313960:CDS |
| CTAAAGATTTCTGATAACAC+TGG | 0.584076 | 8_4:+12248829 | None:intergenic |
| TGGAAAGAAGTTGTAGAAGT+GGG | 0.584179 | 8_4:-12246588 | Msa1313960:CDS |
| TTCATAGTATCGCGATAATG+TGG | 0.586138 | 8_4:+12247152 | None:intergenic |
| CTCACTTGAAGGAAGAAGAA+GGG | 0.588076 | 8_4:+12245970 | None:intergenic |
| GTGGAAAGAAGTTGTAGAAG+TGG | 0.591624 | 8_4:-12246589 | Msa1313960:CDS |
| CCTTCTTCTTCCTTCAAGTG+AGG | 0.591630 | 8_4:-12245969 | Msa1313960:CDS |
| TGATAAGATCAAAGGCACCT+TGG | 0.595048 | 8_4:-12250534 | Msa1313960:CDS |
| AACGTTAAGAGGAGATGGAA+CGG | 0.597127 | 8_4:-12249460 | Msa1313960:CDS |
| CTAAGTCTTCCACATCCTCA+AGG | 0.600779 | 8_4:-12247632 | Msa1313960:CDS |
| TTTGGGGAATATCCATATGG+AGG | 0.602788 | 8_4:-12246450 | Msa1313960:intron |
| AATTGTCTATAGAAGACAAG+TGG | 0.603348 | 8_4:+12249492 | None:intergenic |
| TTATTGAAAAGACATTCTTG+TGG | 0.603556 | 8_4:-12247085 | Msa1313960:CDS |
| AGTGGAGCAGGTGTTTCACT+TGG | 0.604250 | 8_4:+12249510 | None:intergenic |
| CGTTAAGAGGAGATGGAACG+GGG | 0.609519 | 8_4:-12249458 | Msa1313960:CDS |
| GATATGGAATTATTGTGTCA+TGG | 0.613887 | 8_4:+12247750 | None:intergenic |
| TCCGTAAACAAGAAAGTCTG+AGG | 0.614195 | 8_4:+12249008 | None:intergenic |
| AGCCAGGATTTACACCAGCA+AGG | 0.615323 | 8_4:+12248443 | None:intergenic |
| GCTCCATCAATAATCTTCGT+AGG | 0.617317 | 8_4:+12250467 | None:intergenic |
| GATGTGCTTGATCTATATGA+AGG | 0.617798 | 8_4:-12248898 | Msa1313960:CDS |
| GAAGTTGTAGAAGTGGGTCA+TGG | 0.620662 | 8_4:-12246582 | Msa1313960:CDS |
| GAATCATTGAGAAATAGAGT+TGG | 0.622720 | 8_4:-12246013 | Msa1313960:CDS |
| AGAGGGTCTCACTGTTGATG+AGG | 0.625299 | 8_4:-12247904 | Msa1313960:intron |
| ATTTGGCTAAGTATATCTGT+AGG | 0.628627 | 8_4:+12248862 | None:intergenic |
| GTGACAAGAAAGACGAGCCA+TGG | 0.634560 | 8_4:-12246560 | Msa1313960:CDS |
| TCATCCTTAGTAAATGCAGA+TGG | 0.634658 | 8_4:-12247110 | Msa1313960:CDS |
| CTTGATGATATCCCGAACGT+TGG | 0.638510 | 8_4:-12250037 | Msa1313960:CDS |
| AGACTTAGCTCAATGGCCAA+AGG | 0.639000 | 8_4:+12247647 | None:intergenic |
| TTGAGGGACAAATAATTCTG+AGG | 0.639735 | 8_4:-12246045 | Msa1313960:CDS |
| GAGTAGTGAGTAAGTCTGCA+TGG | 0.640206 | 8_4:-12248495 | Msa1313960:intron |
| AACAGCTGCATGAAGAGCTG+AGG | 0.641558 | 8_4:+12246476 | None:intergenic |
| ATTGAAAAGACATTCTTGTG+GGG | 0.649770 | 8_4:-12247083 | Msa1313960:CDS |
| CCCAAAACTGACCCTTATCG+GGG | 0.650241 | 8_4:+12249379 | None:intergenic |
| CAGTCATAGAAATCTTGTCA+AGG | 0.657010 | 8_4:-12246177 | Msa1313960:CDS |
| TAATTAGCTCTACTAAAACT+GGG | 0.666859 | 8_4:-12250376 | Msa1313960:CDS |
| CAGATCCTAACACTGAGAGA+AGG | 0.669579 | 8_4:-12249080 | Msa1313960:CDS |
| ACAAGAAAGACGAGCCATGG+TGG | 0.683058 | 8_4:-12246557 | Msa1313960:CDS |
| ACACCGAATTGATCTCCTTG+AGG | 0.687282 | 8_4:+12247617 | None:intergenic |
| GTGCTTGATCTATATGAAGG+AGG | 0.701156 | 8_4:-12248895 | Msa1313960:CDS |
| CAAGAGTCAAGCTCACAAGG+AGG | 0.745830 | 8_4:+12250056 | None:intergenic |
| GTTAAGAGGAGATGGAACGG+GGG | 0.770400 | 8_4:-12249457 | Msa1313960:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CAAAAAATTATTTTTGAAAA+TGG | - | chr8_4:12246747-12246766 | Msa1313960:intron | 10.0% |
| !!! | GCAATTTAAAATAATAAAAA+AGG | + | chr8_4:12247261-12247280 | None:intergenic | 10.0% |
| !! | ATGTATTTGTATAATTTATA+AGG | + | chr8_4:12248230-12248249 | None:intergenic | 10.0% |
| !!! | ATATTTTTAGTCTATTTTTA+AGG | + | chr8_4:12248260-12248279 | None:intergenic | 10.0% |
| !! | TATGTAATATTTATTTAATC+GGG | - | chr8_4:12250160-12250179 | Msa1313960:CDS | 10.0% |
| !! | AATTATATTCAAATACTACT+AGG | + | chr8_4:12246569-12246588 | None:intergenic | 15.0% |
| !!! | ATTGCATTTTTTACTAAAAA+TGG | - | chr8_4:12247276-12247295 | Msa1313960:intron | 15.0% |
| !!! | TTTTTTACTAAAAATGGTAA+AGG | - | chr8_4:12247282-12247301 | Msa1313960:intron | 15.0% |
| !! | CCTATAAAAAAATAATCTAA+GGG | + | chr8_4:12247312-12247331 | None:intergenic | 15.0% |
| !! | ACCTATAAAAAAATAATCTA+AGG | + | chr8_4:12247313-12247332 | None:intergenic | 15.0% |
| !! | AATTTGTATCAATAGAAAAT+TGG | - | chr8_4:12248290-12248309 | Msa1313960:intron | 15.0% |
| !! | CATACTAAATAAATCAAATT+TGG | + | chr8_4:12248630-12248649 | None:intergenic | 15.0% |
| !!! | CAAATTTGATTTATTTAGTA+TGG | - | chr8_4:12248628-12248647 | Msa1313960:intron | 15.0% |
| !!! | GTTACTAAATTTTATAACAA+CGG | + | chr8_4:12249105-12249124 | None:intergenic | 15.0% |
| !! | AATATCTTCAAAAGTTTATA+AGG | - | chr8_4:12249434-12249453 | Msa1313960:CDS | 15.0% |
| !! | AAAAAAATTCGTATCAAAAT+TGG | - | chr8_4:12250135-12250154 | Msa1313960:CDS | 15.0% |
| !!! | TATGAATATTTTTCAGTAAC+CGG | - | chr8_4:12246241-12246260 | Msa1313960:intron | 20.0% |
| !! | TCACACTTATTTGTTTAATA+AGG | + | chr8_4:12246727-12246746 | None:intergenic | 20.0% |
| !! | TTATGATGTTTACAATGATT+TGG | - | chr8_4:12247073-12247092 | Msa1313960:intron | 20.0% |
| !! | TATGATGTTTACAATGATTT+GGG | - | chr8_4:12247074-12247093 | Msa1313960:intron | 20.0% |
| !! | CAATAAAATTTACTGAAAGT+AGG | + | chr8_4:12247221-12247240 | None:intergenic | 20.0% |
| !!! | CCCTTAGATTATTTTTTTAT+AGG | - | chr8_4:12247309-12247328 | Msa1313960:intron | 20.0% |
| !!! | TATCAGTTTTTAGATTAATC+CGG | - | chr8_4:12247834-12247853 | Msa1313960:intron | 20.0% |
| !!! | AAAGTGTCATTTTAAAAACT+TGG | + | chr8_4:12247906-12247925 | None:intergenic | 20.0% |
| !!! | CAAAATCTATCAATTTTCTA+TGG | + | chr8_4:12248179-12248198 | None:intergenic | 20.0% |
| !! | AGAATGATGTTTAACAATTA+GGG | + | chr8_4:12248443-12248462 | None:intergenic | 20.0% |
| !! | AAGAATGATGTTTAACAATT+AGG | + | chr8_4:12248444-12248463 | None:intergenic | 20.0% |
| !!! | TGATTTTCCAAAATAATTAC+AGG | - | chr8_4:12248467-12248486 | Msa1313960:CDS | 20.0% |
| !! | TGTTCAAAAAATTAATCACT+TGG | + | chr8_4:12248673-12248692 | None:intergenic | 20.0% |
| !!! | AAGTGATTAATTTTTTGAAC+AGG | - | chr8_4:12248672-12248691 | Msa1313960:intron | 20.0% |
| !! | AATTTAGAGACTTGAAAAAA+TGG | - | chr8_4:12249064-12249083 | Msa1313960:CDS | 20.0% |
| !! | AAAAAACACATAAACTAGTA+AGG | + | chr8_4:12249169-12249188 | None:intergenic | 20.0% |
| !! | GTAAATTCATGTATATGAAT+TGG | - | chr8_4:12249191-12249210 | Msa1313960:intron | 20.0% |
| !!! | ATTGGTTATGAATATTTTGA+TGG | - | chr8_4:12249209-12249228 | Msa1313960:intron | 20.0% |
| !! | GGATGTAATAGTTTATAAAT+AGG | + | chr8_4:12249309-12249328 | None:intergenic | 20.0% |
| !! | TTCAAAAGTTTATAAGGATT+GGG | - | chr8_4:12249440-12249459 | Msa1313960:CDS | 20.0% |
| !!! | CGATAGTTTTTTATAGTTAA+AGG | - | chr8_4:12249599-12249618 | Msa1313960:intron | 20.0% |
| !!! | TCAAATATTTTACATATCAC+AGG | - | chr8_4:12250190-12250209 | Msa1313960:CDS | 20.0% |
| !! | TTTTAGTAGAGCTAATTAAC+TGG | + | chr8_4:12246101-12246120 | None:intergenic | 25.0% |
| !!! | TTAATTAGCTCTACTAAAAC+TGG | - | chr8_4:12246102-12246121 | Msa1313960:CDS | 25.0% |
| !!! | TAATTAGCTCTACTAAAACT+GGG | - | chr8_4:12246103-12246122 | Msa1313960:CDS | 25.0% |
| !!! | TAAATTAATTTGTACCGAGA+TGG | + | chr8_4:12246192-12246211 | None:intergenic | 25.0% |
| !!! | ATGAATATTTTTCAGTAACC+GGG | - | chr8_4:12246242-12246261 | Msa1313960:intron | 25.0% |
| ! | AAAAGAAGCTTACTTAAAAG+AGG | - | chr8_4:12246279-12246298 | Msa1313960:intron | 25.0% |
| ! | AATTAACAATTTGCCAACAT+TGG | - | chr8_4:12246303-12246322 | Msa1313960:intron | 25.0% |
| ! | ATTAACAATTTGCCAACATT+GGG | - | chr8_4:12246304-12246323 | Msa1313960:intron | 25.0% |
| ! | ATATTCAAATTCAATGCTGA+AGG | + | chr8_4:12246344-12246363 | None:intergenic | 25.0% |
| ! | TTTGAATATGATAGCAACTT+TGG | - | chr8_4:12246355-12246374 | Msa1313960:intron | 25.0% |
| ! | TATATTCAAATACTACTAGG+TGG | + | chr8_4:12246566-12246585 | None:intergenic | 25.0% |
| ! | ACCAATAATACAAATCTTGA+AGG | - | chr8_4:12246847-12246866 | Msa1313960:intron | 25.0% |
| ! | AACAACATTGAAAGTTGAAA+GGG | + | chr8_4:12246877-12246896 | None:intergenic | 25.0% |
| ! | TAACAACATTGAAAGTTGAA+AGG | + | chr8_4:12246878-12246897 | None:intergenic | 25.0% |
| ! | TCAAATACAGATTGTATCAA+TGG | + | chr8_4:12247524-12247543 | None:intergenic | 25.0% |
| ! | TCAAAGCTATCAAATTCATT+TGG | + | chr8_4:12247560-12247579 | None:intergenic | 25.0% |
| ! | GATATACCTTGAATTACTTT+AGG | + | chr8_4:12247710-12247729 | None:intergenic | 25.0% |
| ! | ATGAACATGTTAAACTTACT+TGG | + | chr8_4:12248075-12248094 | None:intergenic | 25.0% |
| ! | CAGAAACTAAAAACCAAATT+TGG | - | chr8_4:12248316-12248335 | Msa1313960:intron | 25.0% |
| ! | ACCAAATTTGGATAGAAAAT+TGG | - | chr8_4:12248328-12248347 | Msa1313960:intron | 25.0% |
| !! | TCCAATTTTCTATCCAAATT+TGG | + | chr8_4:12248332-12248351 | None:intergenic | 25.0% |
| ! | CTCGAGATAATTATACTTAT+AGG | - | chr8_4:12248372-12248391 | Msa1313960:intron | 25.0% |
| !! | GGAAATTCCTGTAATTATTT+TGG | + | chr8_4:12248477-12248496 | None:intergenic | 25.0% |
| ! | ACACAATAATTCCATATCTA+AGG | - | chr8_4:12248734-12248753 | Msa1313960:intron | 25.0% |
| ! | CTAGTAAGGAAAATTTAGAT+AGG | + | chr8_4:12249155-12249174 | None:intergenic | 25.0% |
| ! | TTATTGAAAAGACATTCTTG+TGG | - | chr8_4:12249394-12249413 | Msa1313960:CDS | 25.0% |
| ! | TATTGAAAAGACATTCTTGT+GGG | - | chr8_4:12249395-12249414 | Msa1313960:CDS | 25.0% |
| ! | CTTCAAAAGTTTATAAGGAT+TGG | - | chr8_4:12249439-12249458 | Msa1313960:CDS | 25.0% |
| ! | TTTAATATGAAACCTCCATA+TGG | + | chr8_4:12250044-12250063 | None:intergenic | 25.0% |
| !!! | TATACGTTTTGTTTTAGTCT+CGG | - | chr8_4:12250103-12250122 | Msa1313960:CDS | 25.0% |
| ! | AATCATTGAGAAATAGAGTT+GGG | - | chr8_4:12250467-12250486 | Msa1313960:CDS | 25.0% |
| TTTGGGAATGATAAGATCAA+AGG | - | chr8_4:12245937-12245956 | Msa1313960:CDS | 30.0% | |
| AGACAAATTATTCTCCATCT+CGG | - | chr8_4:12246175-12246194 | Msa1313960:CDS | 30.0% | |
| !! | TGAATATTTTTCAGTAACCG+GGG | - | chr8_4:12246243-12246262 | Msa1313960:intron | 30.0% |
| ! | TTCTTAATTTTGAATGCTCC+AGG | + | chr8_4:12246385-12246404 | None:intergenic | 30.0% |
| ATAGATTGCTCTTACATTGT+TGG | + | chr8_4:12246539-12246558 | None:intergenic | 30.0% | |
| GCCTTCAAGATTTGTATTAT+TGG | + | chr8_4:12246851-12246870 | None:intergenic | 30.0% | |
| AATTGTCTATAGAAGACAAG+TGG | + | chr8_4:12246990-12247009 | None:intergenic | 30.0% | |
| TTAGAGTTGAAAACGTTAAG+AGG | - | chr8_4:12247008-12247027 | Msa1313960:intron | 30.0% | |
| ATTTGGCTAAGTATATCTGT+AGG | + | chr8_4:12247620-12247639 | None:intergenic | 30.0% | |
| ATTTCTGATAACACTGGTAA+AGG | + | chr8_4:12247647-12247666 | None:intergenic | 30.0% | |
| CTAAAGATTTCTGATAACAC+TGG | + | chr8_4:12247653-12247672 | None:intergenic | 30.0% | |
| !! | TCAGAAATCTTTAGAACTGA+TGG | - | chr8_4:12247659-12247678 | Msa1313960:CDS | 30.0% |
| TTCAATTGTCGAAATATGAC+AGG | + | chr8_4:12247787-12247806 | None:intergenic | 30.0% | |
| TCCTGTTAAATCTCAATTAC+CGG | + | chr8_4:12247856-12247875 | None:intergenic | 30.0% | |
| AACATGTTAAACTTACTTGG+AGG | + | chr8_4:12248072-12248091 | None:intergenic | 30.0% | |
| ACTTGGTCAATTCTATTCAT+TGG | + | chr8_4:12248656-12248675 | None:intergenic | 30.0% | |
| GATATGGAATTATTGTGTCA+TGG | + | chr8_4:12248732-12248751 | None:intergenic | 30.0% | |
| !! | GAGTTTATTAGCCTTAGATA+TGG | + | chr8_4:12248748-12248767 | None:intergenic | 30.0% |
| !! | ATCACTTTTCAAGAAAAGGA+TGG | + | chr8_4:12248800-12248819 | None:intergenic | 30.0% |
| ! | ATCCTTTTCTTGAAAAGTGA+TGG | - | chr8_4:12248799-12248818 | Msa1313960:CDS | 30.0% |
| !! | TTCCATCACTTTTCAAGAAA+AGG | + | chr8_4:12248804-12248823 | None:intergenic | 30.0% |
| GTTTACTATAACATAAGCCT+TGG | + | chr8_4:12248947-12248966 | None:intergenic | 30.0% | |
| !!! | TGAATATTTTGATGGATTGC+AGG | - | chr8_4:12249217-12249236 | Msa1313960:intron | 30.0% |
| AATACCATCTGCATTTACTA+AGG | + | chr8_4:12249376-12249395 | None:intergenic | 30.0% | |
| ATTGAAAAGACATTCTTGTG+GGG | - | chr8_4:12249396-12249415 | Msa1313960:CDS | 30.0% | |
| ATCTCAAATCCATCACTAAT+CGG | + | chr8_4:12249549-12249568 | None:intergenic | 30.0% | |
| !!! | AGTGATGGATTTGAGATTTT+CGG | - | chr8_4:12249552-12249571 | Msa1313960:intron | 30.0% |
| TATAGTGACCAACATAGTTA+GGG | + | chr8_4:12249579-12249598 | None:intergenic | 30.0% | |
| TTGTGCTCTTGTTAATTTAG+AGG | - | chr8_4:12249683-12249702 | Msa1313960:intron | 30.0% | |
| TTCATCTGATGTGAAGTATA+TGG | + | chr8_4:12249838-12249857 | None:intergenic | 30.0% | |
| AAGTTCGCAGTATTATCATA+TGG | - | chr8_4:12249976-12249995 | Msa1313960:CDS | 30.0% | |
| ! | TTCATGCAGCTGTTAATTTT+GGG | - | chr8_4:12250012-12250031 | Msa1313960:CDS | 30.0% |
| !! | AATTTTGGGGAATATCCATA+TGG | - | chr8_4:12250026-12250045 | Msa1313960:CDS | 30.0% |
| ! | ACAAAACGTATACCTTTTTC+AGG | + | chr8_4:12250095-12250114 | None:intergenic | 30.0% |
| ! | AGTTTTACCAAACTTCTTGA+AGG | + | chr8_4:12250404-12250423 | None:intergenic | 30.0% |
| TAAAACTCTAGCTGAAATTG+AGG | - | chr8_4:12250417-12250436 | Msa1313960:CDS | 30.0% | |
| AAAACTCTAGCTGAAATTGA+GGG | - | chr8_4:12250418-12250437 | Msa1313960:CDS | 30.0% | |
| GAATCATTGAGAAATAGAGT+TGG | - | chr8_4:12250466-12250485 | Msa1313960:CDS | 30.0% | |
| ! | ATTCTTTTGCATCAACACCA+AGG | + | chr8_4:12245965-12245984 | None:intergenic | 35.0% |
| GTTGATGCAAAAGAATGTCT+TGG | - | chr8_4:12245969-12245988 | Msa1313960:CDS | 35.0% | |
| GATCCTACGAAGATTATTGA+TGG | - | chr8_4:12246009-12246028 | Msa1313960:CDS | 35.0% | |
| ATTATTGATGGAGCCTTAGA+CGG | - | chr8_4:12246021-12246040 | Msa1313960:CDS | 35.0% | |
| TGATACACTTACTTCCTTTC+TGG | - | chr8_4:12246059-12246078 | Msa1313960:CDS | 35.0% | |
| GATACACTTACTTCCTTTCT+GGG | - | chr8_4:12246060-12246079 | Msa1313960:CDS | 35.0% | |
| GTTTGTTTATCTCCCAATGT+TGG | + | chr8_4:12246319-12246338 | None:intergenic | 35.0% | |
| AGAGTTGCAAACAAAGTGAA+TGG | + | chr8_4:12246470-12246489 | None:intergenic | 35.0% | |
| ! | TTCACTTTGTTTGCAACTCT+TGG | - | chr8_4:12246470-12246489 | Msa1313960:CDS | 35.0% |
| ! | TCACTTTGTTTGCAACTCTT+GGG | - | chr8_4:12246471-12246490 | Msa1313960:CDS | 35.0% |
| CGAAGAAAATACGATCAGTT+TGG | + | chr8_4:12246516-12246535 | None:intergenic | 35.0% | |
| CGTCTCGTTTGATTGATAAA+AGG | - | chr8_4:12246686-12246705 | Msa1313960:intron | 35.0% | |
| CTCGTTTGATTGATAAAAGG+TGG | - | chr8_4:12246689-12246708 | Msa1313960:intron | 35.0% | |
| TTGAAAACGTTAAGAGGAGA+TGG | - | chr8_4:12247014-12247033 | Msa1313960:intron | 35.0% | |
| ! | ATTCCAAGAGATGAAGCTTT+TGG | - | chr8_4:12247437-12247456 | Msa1313960:intron | 35.0% |
| ! | TTCCAAGAGATGAAGCTTTT+GGG | - | chr8_4:12247438-12247457 | Msa1313960:intron | 35.0% |
| ! | TCCTCAGACTTTCTTGTTTA+CGG | - | chr8_4:12247470-12247489 | Msa1313960:intron | 35.0% |
| GATGTGCTTGATCTATATGA+AGG | - | chr8_4:12247581-12247600 | Msa1313960:intron | 35.0% | |
| ACACTGGTAAAGGACTAATT+TGG | + | chr8_4:12247637-12247656 | None:intergenic | 35.0% | |
| CCTTGAATTACTTTAGGTGT+AGG | + | chr8_4:12247704-12247723 | None:intergenic | 35.0% | |
| CCTACACCTAAAGTAATTCA+AGG | - | chr8_4:12247701-12247720 | Msa1313960:CDS | 35.0% | |
| ATAAGTGGTTGCTTAGCAAA+AGG | + | chr8_4:12247736-12247755 | None:intergenic | 35.0% | |
| CGAGCAAAGAATTCAATAAG+TGG | + | chr8_4:12247751-12247770 | None:intergenic | 35.0% | |
| TCCGGTAATTGAGATTTAAC+AGG | - | chr8_4:12247852-12247871 | Msa1313960:intron | 35.0% | |
| TGGATGACTGATGAAGAATT+TGG | - | chr8_4:12248004-12248023 | Msa1313960:intron | 35.0% | |
| ! | GCAATGTTTCTACACTTAAC+TGG | - | chr8_4:12248417-12248436 | Msa1313960:intron | 35.0% |
| !!! | CTATCTAGCTTACTTTTTGG+AGG | + | chr8_4:12248498-12248517 | None:intergenic | 35.0% |
| !! | GCACTATCTAGCTTACTTTT+TGG | + | chr8_4:12248501-12248520 | None:intergenic | 35.0% |
| CACATAGAGCTTAACTTAGA+GGG | - | chr8_4:12248558-12248577 | Msa1313960:intron | 35.0% | |
| !! | TGATGGAACTTTAAAGCCTT+TGG | - | chr8_4:12248816-12248835 | Msa1313960:CDS | 35.0% |
| ! | CATCGACAAATTTTTACCAG+TGG | + | chr8_4:12248996-12249015 | None:intergenic | 35.0% |
| ! | CTGTTTGTTGCTATGACAAA+TGG | + | chr8_4:12249267-12249286 | None:intergenic | 35.0% |
| TTCATAGTATCGCGATAATG+TGG | + | chr8_4:12249330-12249349 | None:intergenic | 35.0% | |
| TCATCCTTAGTAAATGCAGA+TGG | - | chr8_4:12249369-12249388 | Msa1313960:intron | 35.0% | |
| ! | ACCTTTTGATAAGATCAGCA+GGG | + | chr8_4:12249485-12249504 | None:intergenic | 35.0% |
| ! | TACCTTTTGATAAGATCAGC+AGG | + | chr8_4:12249486-12249505 | None:intergenic | 35.0% |
| TCACAAACTCATTTAGCGAT+TGG | + | chr8_4:12249526-12249545 | None:intergenic | 35.0% | |
| GTATAGTGACCAACATAGTT+AGG | + | chr8_4:12249580-12249599 | None:intergenic | 35.0% | |
| !! | TGTTGATGGACTTGACATTT+GGG | - | chr8_4:12249772-12249791 | Msa1313960:intron | 35.0% |
| ! | TTTGGGATGCTATTAAGACA+TGG | - | chr8_4:12249789-12249808 | Msa1313960:intron | 35.0% |
| TTGGGATGCTATTAAGACAT+GGG | - | chr8_4:12249790-12249809 | Msa1313960:intron | 35.0% | |
| CATCAGATGAAAAATTCAGC+AGG | - | chr8_4:12249847-12249866 | Msa1313960:intron | 35.0% | |
| TGGAAAGAAGTTGTAGAAGT+GGG | - | chr8_4:12249891-12249910 | Msa1313960:intron | 35.0% | |
| ! | CTTCATGCAGCTGTTAATTT+TGG | - | chr8_4:12250011-12250030 | Msa1313960:CDS | 35.0% |
| ! | TCATGCAGCTGTTAATTTTG+GGG | - | chr8_4:12250013-12250032 | Msa1313960:CDS | 35.0% |
| ATTAATCGCCTACTAAGAGT+TGG | + | chr8_4:12250071-12250090 | None:intergenic | 35.0% | |
| TTCTCAAATAAGCCTTCTGA+GGG | + | chr8_4:12250246-12250265 | None:intergenic | 35.0% | |
| CAGTCATAGAAATCTTGTCA+AGG | - | chr8_4:12250302-12250321 | Msa1313960:intron | 35.0% | |
| !! | AAAGAGAAAGTGCTGAGTAT+TGG | - | chr8_4:12250353-12250372 | Msa1313960:intron | 35.0% |
| TTGAGGGACAAATAATTCTG+AGG | - | chr8_4:12250434-12250453 | Msa1313960:CDS | 35.0% | |
| !! | TGATAAGATCAAAGGCACCT+TGG | - | chr8_4:12245945-12245964 | Msa1313960:CDS | 40.0% |
| GCTCCATCAATAATCTTCGT+AGG | + | chr8_4:12246015-12246034 | None:intergenic | 40.0% | |
| TTATTGATGGAGCCTTAGAC+GGG | - | chr8_4:12246022-12246041 | Msa1313960:CDS | 40.0% | |
| !! | TATTTTTCAGTAACCGGGGA+AGG | - | chr8_4:12246247-12246266 | Msa1313960:intron | 40.0% |
| !! | ATTTTTCAGTAACCGGGGAA+GGG | - | chr8_4:12246248-12246267 | Msa1313960:intron | 40.0% |
| !! | GATAGCAACTTTGGAATTCC+TGG | - | chr8_4:12246364-12246383 | Msa1313960:intron | 40.0% |
| AAGTGAATGGTTCCAACGTT+CGG | + | chr8_4:12246457-12246476 | None:intergenic | 40.0% | |
| TTGATAAAAGGTGGTCAGTG+TGG | - | chr8_4:12246698-12246717 | Msa1313960:intron | 40.0% | |
| AACGTTAAGAGGAGATGGAA+CGG | - | chr8_4:12247019-12247038 | Msa1313960:intron | 40.0% | |
| ATAGTCTAACCTGTTGCTGT+TGG | + | chr8_4:12247175-12247194 | None:intergenic | 40.0% | |
| TCCGTAAACAAGAAAGTCTG+AGG | + | chr8_4:12247474-12247493 | None:intergenic | 40.0% | |
| GTGCTTGATCTATATGAAGG+AGG | - | chr8_4:12247584-12247603 | Msa1313960:intron | 40.0% | |
| CTTTAGGTGTAGGAAACTTG+AGG | + | chr8_4:12247694-12247713 | None:intergenic | 40.0% | |
| ATATGACAGGAGAGACATGA+TGG | + | chr8_4:12247774-12247793 | None:intergenic | 40.0% | |
| TTAACAGGAGAGATCGATCA+AGG | - | chr8_4:12247867-12247886 | Msa1313960:intron | 40.0% | |
| TAACAGGAGAGATCGATCAA+GGG | - | chr8_4:12247868-12247887 | Msa1313960:intron | 40.0% | |
| AAGCTAGATAGTGCAGTCTA+TGG | - | chr8_4:12248507-12248526 | Msa1313960:intron | 40.0% | |
| GTTAAGCTCTATGTGCTCTT+TGG | + | chr8_4:12248553-12248572 | None:intergenic | 40.0% | |
| GCACATAGAGCTTAACTTAG+AGG | - | chr8_4:12248557-12248576 | Msa1313960:intron | 40.0% | |
| ! | TCTTGAAGCATAGGCTTTTG+TGG | + | chr8_4:12248776-12248795 | None:intergenic | 40.0% |
| AAGGATGGTTCTTGAAGCAT+AGG | + | chr8_4:12248785-12248804 | None:intergenic | 40.0% | |
| ATGTGGAAGACTTAGCTCAA+TGG | + | chr8_4:12248842-12248861 | None:intergenic | 40.0% | |
| AATTGATCTCCTTGAGGATG+TGG | + | chr8_4:12248859-12248878 | None:intergenic | 40.0% | |
| CATCCTCAAGGAGATCAATT+CGG | - | chr8_4:12248859-12248878 | Msa1313960:CDS | 40.0% | |
| !! | AAGGTGTTGAAGCTACTGTT+TGG | - | chr8_4:12248914-12248933 | Msa1313960:CDS | 40.0% |
| AAAAGACATTCTTGTGGGGA+GGG | - | chr8_4:12249400-12249419 | Msa1313960:CDS | 40.0% | |
| TTTGATAAGATCAGCAGGGA+GGG | + | chr8_4:12249481-12249500 | None:intergenic | 40.0% | |
| ! | TTTTGATAAGATCAGCAGGG+AGG | + | chr8_4:12249482-12249501 | None:intergenic | 40.0% |
| TCCCTGCTGATCTTATCAAA+AGG | - | chr8_4:12249481-12249500 | Msa1313960:CDS | 40.0% | |
| AGTTTGTGACCGATTAGTGA+TGG | - | chr8_4:12249537-12249556 | Msa1313960:intron | 40.0% | |
| ! | TTTTCGGTCCCTAACTATGT+TGG | - | chr8_4:12249568-12249587 | Msa1313960:intron | 40.0% |
| GATTACCCTTATGCTGTTGA+TGG | - | chr8_4:12249758-12249777 | Msa1313960:intron | 40.0% | |
| CAAGTCCATCAACAGCATAA+GGG | + | chr8_4:12249766-12249785 | None:intergenic | 40.0% | |
| TCAAGTCCATCAACAGCATA+AGG | + | chr8_4:12249767-12249786 | None:intergenic | 40.0% | |
| !! | CTGTTGATGGACTTGACATT+TGG | - | chr8_4:12249771-12249790 | Msa1313960:intron | 40.0% |
| CAACTTCTTTCCACCAAGAT+TGG | + | chr8_4:12249884-12249903 | None:intergenic | 40.0% | |
| GTGGAAAGAAGTTGTAGAAG+TGG | - | chr8_4:12249890-12249909 | Msa1313960:intron | 40.0% | |
| ! | TCTTCGCGAGTTTGCATTTT+CGG | + | chr8_4:12249948-12249967 | None:intergenic | 40.0% |
| TTTGGGGAATATCCATATGG+AGG | - | chr8_4:12250029-12250048 | Msa1313960:CDS | 40.0% | |
| TAAACCGTCCAACTCTTAGT+AGG | - | chr8_4:12250060-12250079 | Msa1313960:CDS | 40.0% | |
| AGGCGATTAATGCCTGAAAA+AGG | - | chr8_4:12250080-12250099 | Msa1313960:CDS | 40.0% | |
| GGTAGCAAGCTCATTATACT+CGG | + | chr8_4:12250221-12250240 | None:intergenic | 40.0% | |
| GTTCTCAAATAAGCCTTCTG+AGG | + | chr8_4:12250247-12250266 | None:intergenic | 40.0% | |
| AAACTTCTTGAAGGCTGCTA+TGG | + | chr8_4:12250395-12250414 | None:intergenic | 40.0% | |
| ATAGCAGCCTTCAAGAAGTT+TGG | - | chr8_4:12250394-12250413 | Msa1313960:CDS | 40.0% | |
| ! | GAAGGAAGAAGAAGGGTATA+AGG | + | chr8_4:12250505-12250524 | None:intergenic | 40.0% |
| CTCACTTGAAGGAAGAAGAA+GGG | + | chr8_4:12250512-12250531 | None:intergenic | 40.0% | |
| !! | GAGGAAGGACTTACTTTTAG+AGG | - | chr8_4:12250529-12250548 | Msa1313960:CDS | 40.0% |
| AATCGATCCAAACCCGTCTA+AGG | + | chr8_4:12246037-12246056 | None:intergenic | 45.0% | |
| ACAAATCGATCGACCCAGAA+AGG | + | chr8_4:12246076-12246095 | None:intergenic | 45.0% | |
| ! | TTTTCCAAGTTTCCCTTCCC+CGG | + | chr8_4:12246263-12246282 | None:intergenic | 45.0% |
| CATCAAGAGTCAAGCTCACA+AGG | + | chr8_4:12246429-12246448 | None:intergenic | 45.0% | |
| ! | CTTGATGATATCCCGAACGT+TGG | - | chr8_4:12246442-12246461 | Msa1313960:intron | 45.0% |
| AGTGAATGGTTCCAACGTTC+GGG | + | chr8_4:12246456-12246475 | None:intergenic | 45.0% | |
| CTATAGAAGACAAGTGGAGC+AGG | + | chr8_4:12246984-12247003 | None:intergenic | 45.0% | |
| ACGTTAAGAGGAGATGGAAC+GGG | - | chr8_4:12247020-12247039 | Msa1313960:intron | 45.0% | |
| TCCCAAAACTGACCCTTATC+GGG | + | chr8_4:12247104-12247123 | None:intergenic | 45.0% | |
| CTCCCAAAACTGACCCTTAT+CGG | + | chr8_4:12247105-12247124 | None:intergenic | 45.0% | |
| TTATCCTCGTAGGGGAAGAA+CGG | - | chr8_4:12247141-12247160 | Msa1313960:CDS | 45.0% | |
| CAGATCCTAACACTGAGAGA+AGG | - | chr8_4:12247399-12247418 | Msa1313960:intron | 45.0% | |
| TGCCCAAAAGCTTCATCTCT+TGG | + | chr8_4:12247443-12247462 | None:intergenic | 45.0% | |
| GTGGTTGCTTAGCAAAAGGT+AGG | + | chr8_4:12247732-12247751 | None:intergenic | 45.0% | |
| AACAGGAGAGATCGATCAAG+GGG | - | chr8_4:12247869-12247888 | Msa1313960:intron | 45.0% | |
| GAGTAGTGAGTAAGTCTGCA+TGG | - | chr8_4:12247984-12248003 | Msa1313960:CDS | 45.0% | |
| TTTGGAAGAGAGATCCTTGC+TGG | - | chr8_4:12248022-12248041 | Msa1313960:intron | 45.0% | |
| ATCCTTGCTGGTGTAAATCC+TGG | - | chr8_4:12248034-12248053 | Msa1313960:intron | 45.0% | |
| AGACTTAGCTCAATGGCCAA+AGG | + | chr8_4:12248835-12248854 | None:intergenic | 45.0% | |
| CTAAGTCTTCCACATCCTCA+AGG | - | chr8_4:12248847-12248866 | Msa1313960:CDS | 45.0% | |
| ACACCGAATTGATCTCCTTG+AGG | + | chr8_4:12248865-12248884 | None:intergenic | 45.0% | |
| GTCTACTTGCCTGCAATTGA+AGG | - | chr8_4:12248895-12248914 | Msa1313960:CDS | 45.0% | |
| GCTTCAACACCTTCAATTGC+AGG | + | chr8_4:12248907-12248926 | None:intergenic | 45.0% | |
| TACTGTTTGGCTACTTGCCA+AGG | - | chr8_4:12248927-12248946 | Msa1313960:CDS | 45.0% | |
| TTTACCAGTGGCTGACAAGT+TGG | + | chr8_4:12248984-12249003 | None:intergenic | 45.0% | |
| GAAAAGACATTCTTGTGGGG+AGG | - | chr8_4:12249399-12249418 | Msa1313960:CDS | 45.0% | |
| GGAGATCTGAACTCCAATCT+TGG | - | chr8_4:12249868-12249887 | Msa1313960:intron | 45.0% | |
| GATCTGAACTCCAATCTTGG+TGG | - | chr8_4:12249871-12249890 | Msa1313960:intron | 45.0% | |
| GAAGTTGTAGAAGTGGGTCA+TGG | - | chr8_4:12249897-12249916 | Msa1313960:intron | 45.0% | |
| ATCGCCTACTAAGAGTTGGA+CGG | + | chr8_4:12250067-12250086 | None:intergenic | 45.0% | |
| ! | CAAATAAGCCTTCTGAGGGT+TGG | + | chr8_4:12250242-12250261 | None:intergenic | 45.0% |
| GCTTCTGATGAGTACTACCT+TGG | - | chr8_4:12250328-12250347 | Msa1313960:intron | 45.0% | |
| CAGCACTTTCTCTTTGTCCA+AGG | + | chr8_4:12250348-12250367 | None:intergenic | 45.0% | |
| AGGGTATAAGGCATGCTAAC+TGG | + | chr8_4:12250493-12250512 | None:intergenic | 45.0% | |
| CCTCACTTGAAGGAAGAAGA+AGG | + | chr8_4:12250513-12250532 | None:intergenic | 45.0% | |
| CCTTCTTCTTCCTTCAAGTG+AGG | - | chr8_4:12250510-12250529 | Msa1313960:CDS | 45.0% | |
| CTTCTTCCTTCAAGTGAGGA+AGG | - | chr8_4:12250514-12250533 | Msa1313960:CDS | 45.0% | |
| GTAAGTCCTTCCTCACTTGA+AGG | + | chr8_4:12250523-12250542 | None:intergenic | 45.0% | |
| !!! | CAATTTAAAATAATAAAAAA+GGG | + | chr8_4:12247260-12247279 | None:intergenic | 5.0% |
| !!! | AAAAATTAATGAAAATTTTA+TGG | - | chr8_4:12247945-12247964 | Msa1313960:CDS | 5.0% |
| !!! | TAAATTTCTTTTTAATAATA+TGG | - | chr8_4:12248137-12248156 | Msa1313960:intron | 5.0% |
| !! | ATATGTAATATTTATTTAAT+CGG | - | chr8_4:12250159-12250178 | Msa1313960:CDS | 5.0% |
| CAAGAGTCAAGCTCACAAGG+AGG | + | chr8_4:12246426-12246445 | None:intergenic | 50.0% | |
| AGTGGAGCAGGTGTTTCACT+TGG | + | chr8_4:12246972-12246991 | None:intergenic | 50.0% | |
| CGTTAAGAGGAGATGGAACG+GGG | - | chr8_4:12247021-12247040 | Msa1313960:intron | 50.0% | |
| GTTAAGAGGAGATGGAACGG+GGG | - | chr8_4:12247022-12247041 | Msa1313960:intron | 50.0% | |
| ! | TGATTTGGGTGACCCCGATA+AGG | - | chr8_4:12247088-12247107 | Msa1313960:CDS | 50.0% |
| GATTTGGGTGACCCCGATAA+GGG | - | chr8_4:12247089-12247108 | Msa1313960:CDS | 50.0% | |
| ! | ACCCCGATAAGGGTCAGTTT+TGG | - | chr8_4:12247099-12247118 | Msa1313960:CDS | 50.0% |
| CCCAAAACTGACCCTTATCG+GGG | + | chr8_4:12247103-12247122 | None:intergenic | 50.0% | |
| ! | CCCCGATAAGGGTCAGTTTT+GGG | - | chr8_4:12247100-12247119 | Msa1313960:CDS | 50.0% |
| !!! | CGATAAGGGTCAGTTTTGGG+AGG | - | chr8_4:12247103-12247122 | Msa1313960:CDS | 50.0% |
| CAGCCTTCCTTATCCTCGTA+GGG | - | chr8_4:12247132-12247151 | Msa1313960:CDS | 50.0% | |
| AGCCTTCCTTATCCTCGTAG+GGG | - | chr8_4:12247133-12247152 | Msa1313960:CDS | 50.0% | |
| TTCCCCTACGAGGATAAGGA+AGG | + | chr8_4:12247138-12247157 | None:intergenic | 50.0% | |
| GTTCTTCCCCTACGAGGATA+AGG | + | chr8_4:12247142-12247161 | None:intergenic | 50.0% | |
| TATCCTCGTAGGGGAAGAAC+GGG | - | chr8_4:12247142-12247161 | Msa1313960:CDS | 50.0% | |
| GGCAGAAAACCAACAGCAAC+AGG | - | chr8_4:12247163-12247182 | Msa1313960:CDS | 50.0% | |
| GAGCTCCTTCTCTCAGTGTT+AGG | + | chr8_4:12247407-12247426 | None:intergenic | 50.0% | |
| AGCCAGGATTTACACCAGCA+AGG | + | chr8_4:12248039-12248058 | None:intergenic | 50.0% | |
| AGAGGGTCTCACTGTTGATG+AGG | - | chr8_4:12248575-12248594 | Msa1313960:intron | 50.0% | |
| TTCACCAACTTGTCAGCCAC+TGG | - | chr8_4:12248977-12248996 | Msa1313960:CDS | 50.0% | |
| TAAGATCAGCAGGGAGGGTT+TGG | + | chr8_4:12249476-12249495 | None:intergenic | 50.0% | |
| GCAGATTCAACTTCCCCTCA+CGG | - | chr8_4:12249716-12249735 | Msa1313960:intron | 50.0% | |
| TCACTAGACGAAGACCGTGA+GGG | + | chr8_4:12249733-12249752 | None:intergenic | 50.0% | |
| ATCACTAGACGAAGACCGTG+AGG | + | chr8_4:12249734-12249753 | None:intergenic | 50.0% | |
| CGGTCTTCGTCTAGTGATAG+AGG | - | chr8_4:12249736-12249755 | Msa1313960:intron | 50.0% | |
| GTGACAAGAAAGACGAGCCA+TGG | - | chr8_4:12249919-12249938 | Msa1313960:intron | 50.0% | |
| ACAAGAAAGACGAGCCATGG+TGG | - | chr8_4:12249922-12249941 | Msa1313960:intron | 50.0% | |
| ! | GTTTGCATTTTCGGCCACCA+TGG | + | chr8_4:12249939-12249958 | None:intergenic | 50.0% |
| AACAGCTGCATGAAGAGCTG+AGG | + | chr8_4:12250006-12250025 | None:intergenic | 50.0% | |
| ! | GATGGAGCCTTAGACGGGTT+TGG | - | chr8_4:12246027-12246046 | Msa1313960:CDS | 55.0% |
| GTAACCGGGGAAGGGAAACT+TGG | - | chr8_4:12246256-12246275 | Msa1313960:intron | 55.0% | |
| ! | AACGGGGGAGCGCAAAGAAT+GGG | - | chr8_4:12247037-12247056 | Msa1313960:intron | 55.0% |
| GCAGCCTTCCTTATCCTCGT+AGG | - | chr8_4:12247131-12247150 | Msa1313960:CDS | 55.0% | |
| GGAGAGATCGATCAAGGGGT+TGG | - | chr8_4:12247873-12247892 | Msa1313960:intron | 55.0% | |
| TGGAGGCTGCGAATTAAGCC+AGG | + | chr8_4:12248055-12248074 | None:intergenic | 55.0% | |
| ! | CTTGTGGGGAGGGTATGCTA+TGG | - | chr8_4:12249410-12249429 | Msa1313960:CDS | 55.0% |
| CACTAGACGAAGACCGTGAG+GGG | + | chr8_4:12249732-12249751 | None:intergenic | 55.0% | |
| ! | GCTTGCTACCAACCCTCAGA+AGG | - | chr8_4:12250231-12250250 | Msa1313960:intron | 55.0% |
| ! | GAACGGGGGAGCGCAAAGAA+TGG | - | chr8_4:12247036-12247055 | Msa1313960:intron | 60.0% |
| CTGCCCGTTCTTCCCCTACG+AGG | + | chr8_4:12247148-12247167 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 12245925 | 12250576 | 12245925 | ID=Msa1313960;Name=Msa1313960 |
| chr8_4 | mRNA | 12245925 | 12250576 | 12245925 | ID=Msa1313960-mRNA-1;Parent=Msa1313960;Name=Msa1313960-mRNA-1;_AED=0.34;_eAED=0.35;_QI=0|0.33|0.1|1|1|0.9|10|0|686 |
| chr8_4 | exon | 12250375 | 12250576 | 12250375 | ID=Msa1313960-mRNA-1:exon:4588;Parent=Msa1313960-mRNA-1 |
| chr8_4 | exon | 12249958 | 12250244 | 12249958 | ID=Msa1313960-mRNA-1:exon:4587;Parent=Msa1313960-mRNA-1 |
| chr8_4 | exon | 12249391 | 12249541 | 12249391 | ID=Msa1313960-mRNA-1:exon:4586;Parent=Msa1313960-mRNA-1 |
| chr8_4 | exon | 12248779 | 12249099 | 12248779 | ID=Msa1313960-mRNA-1:exon:4585;Parent=Msa1313960-mRNA-1 |
| chr8_4 | exon | 12248426 | 12248511 | 12248426 | ID=Msa1313960-mRNA-1:exon:4584;Parent=Msa1313960-mRNA-1 |
| chr8_4 | exon | 12247905 | 12248012 | 12247905 | ID=Msa1313960-mRNA-1:exon:4583;Parent=Msa1313960-mRNA-1 |
| chr8_4 | exon | 12247585 | 12247807 | 12247585 | ID=Msa1313960-mRNA-1:exon:4582;Parent=Msa1313960-mRNA-1 |
| chr8_4 | exon | 12247080 | 12247245 | 12247080 | ID=Msa1313960-mRNA-1:exon:4581;Parent=Msa1313960-mRNA-1 |
| chr8_4 | exon | 12246451 | 12246695 | 12246451 | ID=Msa1313960-mRNA-1:exon:4580;Parent=Msa1313960-mRNA-1 |
| chr8_4 | exon | 12245925 | 12246196 | 12245925 | ID=Msa1313960-mRNA-1:exon:4579;Parent=Msa1313960-mRNA-1 |
| chr8_4 | CDS | 12250375 | 12250576 | 12250375 | ID=Msa1313960-mRNA-1:cds;Parent=Msa1313960-mRNA-1 |
| chr8_4 | CDS | 12249958 | 12250244 | 12249958 | ID=Msa1313960-mRNA-1:cds;Parent=Msa1313960-mRNA-1 |
| chr8_4 | CDS | 12249391 | 12249541 | 12249391 | ID=Msa1313960-mRNA-1:cds;Parent=Msa1313960-mRNA-1 |
| chr8_4 | CDS | 12248779 | 12249099 | 12248779 | ID=Msa1313960-mRNA-1:cds;Parent=Msa1313960-mRNA-1 |
| chr8_4 | CDS | 12248426 | 12248511 | 12248426 | ID=Msa1313960-mRNA-1:cds;Parent=Msa1313960-mRNA-1 |
| chr8_4 | CDS | 12247905 | 12248012 | 12247905 | ID=Msa1313960-mRNA-1:cds;Parent=Msa1313960-mRNA-1 |
| chr8_4 | CDS | 12247585 | 12247807 | 12247585 | ID=Msa1313960-mRNA-1:cds;Parent=Msa1313960-mRNA-1 |
| chr8_4 | CDS | 12247080 | 12247245 | 12247080 | ID=Msa1313960-mRNA-1:cds;Parent=Msa1313960-mRNA-1 |
| chr8_4 | CDS | 12246451 | 12246695 | 12246451 | ID=Msa1313960-mRNA-1:cds;Parent=Msa1313960-mRNA-1 |
| chr8_4 | CDS | 12245925 | 12246196 | 12245925 | ID=Msa1313960-mRNA-1:cds;Parent=Msa1313960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
