Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1314000 | XP_003627181.2 | 93.901 | 869 | 53 | 0 | 1 | 869 | 1 | 869 | 0.0 | 1707 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1314000 | sp|P38414|LOX1_LENCU | 77.816 | 861 | 187 | 4 | 11 | 869 | 8 | 866 | 0.0 | 1410 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1314000 | G7LIX6 | 93.901 | 869 | 53 | 0 | 1 | 869 | 1 | 869 | 0.0 | 1707 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1313990 | Msa1314000 | 0.848960 | 4.392490e-60 | -8.615850e-47 |
| Msa1179290 | Msa1314000 | 0.859894 | 3.016561e-63 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1314000 | MtrunA17_Chr8g0342921 | 93.901 | 869 | 53 | 0 | 1 | 869 | 1 | 869 | 0.0 | 1707 |
| Msa1314000 | MtrunA17_Chr8g0342891 | 83.256 | 860 | 137 | 3 | 11 | 869 | 8 | 861 | 0.0 | 1501 |
| Msa1314000 | MtrunA17_Chr8g0342971 | 78.899 | 872 | 179 | 5 | 1 | 869 | 1 | 870 | 0.0 | 1432 |
| Msa1314000 | MtrunA17_Chr8g0342951 | 78.391 | 870 | 185 | 3 | 1 | 869 | 1 | 868 | 0.0 | 1416 |
| Msa1314000 | MtrunA17_Chr8g0344211 | 75.977 | 870 | 206 | 3 | 1 | 869 | 1 | 868 | 0.0 | 1401 |
| Msa1314000 | MtrunA17_Chr8g0342931 | 88.549 | 751 | 84 | 2 | 120 | 869 | 1 | 750 | 0.0 | 1396 |
| Msa1314000 | MtrunA17_Chr8g0343011 | 76.005 | 871 | 201 | 4 | 1 | 869 | 1 | 865 | 0.0 | 1387 |
| Msa1314000 | MtrunA17_Chr8g0342901 | 74.478 | 862 | 176 | 8 | 11 | 869 | 8 | 828 | 0.0 | 1304 |
| Msa1314000 | MtrunA17_Chr2g0329911 | 67.968 | 871 | 267 | 6 | 1 | 869 | 1 | 861 | 0.0 | 1234 |
| Msa1314000 | MtrunA17_Chr8g0342881 | 68.145 | 857 | 263 | 4 | 14 | 869 | 9 | 856 | 0.0 | 1225 |
| Msa1314000 | MtrunA17_Chr2g0329901 | 64.638 | 871 | 298 | 6 | 1 | 869 | 1 | 863 | 0.0 | 1182 |
| Msa1314000 | MtrunA17_Chr5g0406871 | 65.081 | 862 | 291 | 8 | 13 | 869 | 11 | 867 | 0.0 | 1162 |
| Msa1314000 | MtrunA17_Chr8g0343021 | 63.510 | 866 | 307 | 7 | 8 | 869 | 4 | 864 | 0.0 | 1145 |
| Msa1314000 | MtrunA17_Chr8g0343031 | 63.225 | 862 | 310 | 6 | 11 | 869 | 8 | 865 | 0.0 | 1142 |
| Msa1314000 | MtrunA17_Chr3g0120071 | 61.618 | 865 | 319 | 8 | 8 | 869 | 4 | 858 | 0.0 | 1115 |
| Msa1314000 | MtrunA17_Chr8g0343001 | 62.471 | 858 | 261 | 9 | 14 | 869 | 9 | 807 | 0.0 | 1075 |
| Msa1314000 | MtrunA17_Chr8g0342991 | 62.121 | 858 | 264 | 9 | 14 | 869 | 9 | 807 | 0.0 | 1071 |
| Msa1314000 | MtrunA17_Chr8g0342981 | 60.961 | 853 | 279 | 15 | 40 | 869 | 2 | 823 | 0.0 | 1014 |
| Msa1314000 | MtrunA17_Chr1g0191921 | 57.143 | 868 | 335 | 9 | 13 | 869 | 17 | 858 | 0.0 | 994 |
| Msa1314000 | MtrunA17_Chr7g0272791 | 55.835 | 874 | 347 | 11 | 10 | 869 | 19 | 867 | 0.0 | 988 |
| Msa1314000 | MtrunA17_Chr1g0205611 | 54.868 | 873 | 351 | 11 | 15 | 869 | 9 | 856 | 0.0 | 960 |
| Msa1314000 | MtrunA17_Chr8g0344201 | 44.852 | 845 | 444 | 13 | 35 | 868 | 93 | 926 | 0.0 | 721 |
| Msa1314000 | MtrunA17_Chr8g0344241 | 79.241 | 395 | 82 | 0 | 475 | 869 | 67 | 461 | 0.0 | 672 |
| Msa1314000 | MtrunA17_Chr8g0344241 | 69.492 | 59 | 18 | 0 | 296 | 354 | 10 | 68 | 3.80e-20 | 94.7 |
| Msa1314000 | MtrunA17_Chr3g0118651 | 42.890 | 865 | 445 | 16 | 31 | 869 | 62 | 903 | 0.0 | 669 |
| Msa1314000 | MtrunA17_Chr3g0118641 | 44.832 | 774 | 402 | 14 | 110 | 869 | 140 | 902 | 0.0 | 650 |
| Msa1314000 | MtrunA17_Chr8g0377101 | 42.631 | 821 | 442 | 16 | 65 | 869 | 109 | 916 | 0.0 | 639 |
| Msa1314000 | MtrunA17_Chr8g0338451 | 41.392 | 819 | 443 | 17 | 57 | 852 | 46 | 850 | 0.0 | 628 |
| Msa1314000 | MtrunA17_Chr4g0033171 | 46.403 | 709 | 364 | 11 | 170 | 869 | 24 | 725 | 0.0 | 623 |
| Msa1314000 | MtrunA17_Chr4g0047281 | 40.252 | 872 | 475 | 16 | 8 | 866 | 54 | 892 | 0.0 | 623 |
| Msa1314000 | MtrunA17_Chr3g0118621 | 44.877 | 771 | 399 | 14 | 114 | 869 | 106 | 865 | 0.0 | 605 |
| Msa1314000 | MtrunA17_Chr6g0471951 | 39.841 | 502 | 259 | 6 | 333 | 830 | 18 | 480 | 2.61e-128 | 394 |
| Msa1314000 | MtrunA17_Chr7g0218231 | 58.871 | 124 | 50 | 1 | 516 | 638 | 9 | 132 | 2.86e-42 | 150 |
| Msa1314000 | MtrunA17_Chr6g0468081 | 58.427 | 89 | 36 | 1 | 551 | 638 | 1 | 89 | 5.26e-27 | 105 |
| Msa1314000 | MtrunA17_Chr4g0047271 | 40.659 | 91 | 54 | 0 | 778 | 868 | 1 | 91 | 1.26e-17 | 79.0 |
| Msa1314000 | MtrunA17_Chr3g0137991 | 38.583 | 127 | 58 | 4 | 745 | 869 | 1 | 109 | 6.25e-15 | 71.6 |
| Msa1314000 | MtrunA17_Chr2g0277191 | 48.214 | 56 | 29 | 0 | 742 | 797 | 58 | 113 | 3.17e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1314000 | AT1G55020.1 | 54.331 | 889 | 356 | 13 | 1 | 869 | 1 | 859 | 0.0 | 974 |
| Msa1314000 | AT3G22400.1 | 53.759 | 878 | 359 | 12 | 14 | 869 | 34 | 886 | 0.0 | 951 |
| Msa1314000 | AT1G17420.1 | 44.228 | 823 | 437 | 12 | 58 | 869 | 108 | 919 | 0.0 | 696 |
| Msa1314000 | AT1G72520.1 | 43.484 | 821 | 447 | 10 | 58 | 869 | 114 | 926 | 0.0 | 691 |
| Msa1314000 | AT3G45140.1 | 42.962 | 817 | 430 | 19 | 66 | 869 | 103 | 896 | 0.0 | 639 |
| Msa1314000 | AT3G45140.2 | 44.372 | 764 | 399 | 17 | 119 | 869 | 4 | 754 | 0.0 | 630 |
| Msa1314000 | AT1G67560.1 | 42.233 | 824 | 442 | 16 | 64 | 869 | 110 | 917 | 0.0 | 621 |
Find 214 sgRNAs with CRISPR-Local
Find 375 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTACTTCCATACCAATTT+TGG | 0.089508 | 8_4:-12341198 | Msa1314000:CDS |
| CATCATGCAGCTGTTAATTT+TGG | 0.165788 | 8_4:-12338362 | Msa1314000:CDS |
| CCACTGTGCCCTTCACCTTT+TGG | 0.205162 | 8_4:+12342982 | None:intergenic |
| CTTTAGGCGGTGGAAACTTT+AGG | 0.212536 | 8_4:+12340091 | None:intergenic |
| GTATGTAAAGCTTGTTGTTT+TGG | 0.234578 | 8_4:+12339540 | None:intergenic |
| AAACCATGAAACTCATTAAA+TGG | 0.239469 | 8_4:+12337914 | None:intergenic |
| TATAGAATCAACATTCTTAA+TGG | 0.251411 | 8_4:-12338991 | Msa1314000:CDS |
| ATTCTGAACTGCAAGCATTT+TGG | 0.253825 | 8_4:-12338502 | Msa1314000:CDS |
| GACTGGCCTGCTCCCAAAAT+TGG | 0.265639 | 8_4:+12341185 | None:intergenic |
| TACCTAATGATCTACTTAAA+AGG | 0.269659 | 8_4:-12338905 | Msa1314000:intron |
| GTTTAGCTGTAACTGTTCTT+TGG | 0.296790 | 8_4:+12339704 | None:intergenic |
| GCTTCAACACCTTCCTTTGC+AGG | 0.298053 | 8_4:+12339332 | None:intergenic |
| ATTATGTTTGTTTGTTTGTT+TGG | 0.299269 | 8_4:-12337832 | Msa1314000:three_prime_UTR |
| TTTAGGCGGTGGAAACTTTA+GGG | 0.316613 | 8_4:+12340092 | None:intergenic |
| CTGCTGATGGACTCGAGATA+TGG | 0.322340 | 8_4:-12338595 | Msa1314000:CDS |
| AGGTTGGCTCGTCCCGTTAT+TGG | 0.330318 | 8_4:-12340596 | Msa1314000:CDS |
| GAAGAATTGAAGACTTTAAG+AGG | 0.337498 | 8_4:-12340704 | Msa1314000:CDS |
| CATTAAATGGAGATACTATT+AGG | 0.340776 | 8_4:+12337927 | None:intergenic |
| TTCTGATTCACAGCCATTAG+AGG | 0.344188 | 8_4:-12338105 | Msa1314000:CDS |
| TCTCCATTTAATGAGTTTCA+TGG | 0.344237 | 8_4:-12337917 | Msa1314000:exon |
| TACTCAGTAGACCCTTTCTT+AGG | 0.359861 | 8_4:+12338281 | None:intergenic |
| TGCTGTATTATATAAGGATT+GGG | 0.361705 | 8_4:-12338946 | Msa1314000:CDS |
| CTTTCTTAGGCATGTGTCTT+CGG | 0.362443 | 8_4:+12338294 | None:intergenic |
| ATAGAATCAACATTCTTAAT+GGG | 0.362811 | 8_4:-12338990 | Msa1314000:CDS |
| GAAGGATATAGCAGAGTATA+TGG | 0.363705 | 8_4:+12337981 | None:intergenic |
| CATTCATCATAGCAACTAAT+AGG | 0.364278 | 8_4:-12339121 | Msa1314000:CDS |
| ATTGTCTGCTGTATTATATA+AGG | 0.364894 | 8_4:-12338952 | Msa1314000:CDS |
| GGAAGCAAAAGTTTATGAAT+AGG | 0.364908 | 8_4:+12339080 | None:intergenic |
| AGCAAGCTAAATGCTGAATA+TGG | 0.370132 | 8_4:-12339747 | Msa1314000:CDS |
| AGAAGCGCCGATGGAGGCCC+CGG | 0.373552 | 8_4:+12342836 | None:intergenic |
| TCTTCTCTATAGTAGACTAA+TGG | 0.377121 | 8_4:+12340725 | None:intergenic |
| TGAGTTGCATACAAAGTTGA+TGG | 0.380177 | 8_4:+12341034 | None:intergenic |
| AAGGTGTTGAAGCTTCTATT+TGG | 0.386060 | 8_4:-12339322 | Msa1314000:CDS |
| TCATCAAAGCTGGTAAATTC+TGG | 0.386583 | 8_4:+12340222 | None:intergenic |
| TCAGCATTTAGCTTGCTCTT+TGG | 0.386589 | 8_4:+12339753 | None:intergenic |
| TTGTTTGTTTGTTTGGTTGT+TGG | 0.388801 | 8_4:-12337825 | Msa1314000:three_prime_UTR |
| TTTAGTCAAAAGTGGATTCA+AGG | 0.389226 | 8_4:-12342895 | Msa1314000:CDS |
| TGACCAAATGCTTCATCTCT+TGG | 0.391905 | 8_4:+12340342 | None:intergenic |
| AGGAAGCGGAAAAGGGAAAG+TGG | 0.395527 | 8_4:-12341246 | Msa1314000:CDS |
| CTGCTGTATTATATAAGGAT+TGG | 0.398026 | 8_4:-12338947 | Msa1314000:CDS |
| AAGCTTGCACTATCCTCATA+TGG | 0.398096 | 8_4:-12338397 | Msa1314000:CDS |
| TAGATACCTTGAATCACTTT+AGG | 0.408665 | 8_4:+12340075 | None:intergenic |
| ACAAGACTTCTATGATTGTA+AGG | 0.408698 | 8_4:+12338186 | None:intergenic |
| AATAGTGATATGGGAGTTCC+AGG | 0.408824 | 8_4:-12341137 | Msa1314000:CDS |
| TGGTATATTCATTACCTTGT+TGG | 0.409146 | 8_4:+12340965 | None:intergenic |
| GGAGATAAAACTTATATTGA+AGG | 0.414733 | 8_4:-12341224 | Msa1314000:CDS |
| CATTTAGCTTGCTCTTTGGT+GGG | 0.415059 | 8_4:+12339757 | None:intergenic |
| GCATTTAGCTTGCTCTTTGG+TGG | 0.416143 | 8_4:+12339756 | None:intergenic |
| TTAAGTATATATCCTCCATA+TGG | 0.416729 | 8_4:+12338332 | None:intergenic |
| GTCAATCCTTCCTCACTTGA+AGG | 0.416919 | 8_4:+12337963 | None:intergenic |
| ATATTTGTAGGAAGCGGAAA+AGG | 0.421470 | 8_4:-12341254 | Msa1314000:intron |
| AAGCTATCAGCCTGAGGATG+TGG | 0.423011 | 8_4:+12339380 | None:intergenic |
| AACCTCTTGAAAGCCTCTAA+TGG | 0.423434 | 8_4:+12338092 | None:intergenic |
| GTTCCAAGAGATGAAGCATT+TGG | 0.423704 | 8_4:-12340345 | Msa1314000:CDS |
| AAGTTGATGGTTCCATGGTT+AGG | 0.428790 | 8_4:+12341047 | None:intergenic |
| GTAATTGCAGATTGTAATTG+AGG | 0.430422 | 8_4:+12340261 | None:intergenic |
| GCGCTATAATTGACACCGCC+GGG | 0.430425 | 8_4:-12342854 | Msa1314000:CDS |
| TTTGAATGGAATAGTGATAT+GGG | 0.431104 | 8_4:-12341146 | Msa1314000:CDS |
| TCATTAGGTAGTCCTTGATC+TGG | 0.433138 | 8_4:+12338918 | None:intergenic |
| CCACCGCCTAAAGTGATTCA+AGG | 0.436675 | 8_4:-12340081 | Msa1314000:intron |
| TCGGCGCTTCTGTGGCTCTC+AGG | 0.438364 | 8_4:-12342824 | Msa1314000:CDS |
| TTAGAGGCTTTCAAGAGGTT+TGG | 0.439698 | 8_4:-12338089 | Msa1314000:CDS |
| CTACTTAGCTCAATGGCTAA+TGG | 0.442112 | 8_4:+12339404 | None:intergenic |
| TCGAGTCCATCAGCAGCATA+AGG | 0.442556 | 8_4:+12338602 | None:intergenic |
| TTCTATTTGGCTCCTTGCCA+AGG | 0.442825 | 8_4:-12339309 | Msa1314000:CDS |
| CGAAGGCCGTGTGGGGAAGT+TGG | 0.442945 | 8_4:+12338644 | None:intergenic |
| GAAGCAAAAGTTTATGAATA+GGG | 0.443422 | 8_4:+12339081 | None:intergenic |
| ATGTGTCTTCGGCTCTTAGT+TGG | 0.447681 | 8_4:+12338305 | None:intergenic |
| CAGCAAATTAAGATGTATGC+AGG | 0.449069 | 8_4:-12343029 | Msa1314000:exon |
| TGGAGAGAAGTTGTAGAGGT+GGG | 0.451733 | 8_4:-12338482 | Msa1314000:CDS |
| GCCAACCTTGCGTACTTGTC+AGG | 0.453757 | 8_4:+12340611 | None:intergenic |
| TTCTCAATATAAAATGCTCC+TGG | 0.455314 | 8_4:+12341119 | None:intergenic |
| CAAGAGGTTTGGTAGGAAGT+TGG | 0.456860 | 8_4:-12338078 | Msa1314000:CDS |
| GGCGCTATAATTGACACCGC+CGG | 0.459938 | 8_4:-12342855 | Msa1314000:CDS |
| CATCCTCAGGCTGATAGCTT+TGG | 0.460107 | 8_4:-12339377 | Msa1314000:CDS |
| CGGCCTTCGCCTTCTGATAG+AGG | 0.462912 | 8_4:-12338630 | Msa1314000:CDS |
| CACCTTCATTTCTCTGTCCA+AGG | 0.465414 | 8_4:+12338138 | None:intergenic |
| CTTCCGAACTGATGGTGAAT+CGG | 0.470853 | 8_4:-12340115 | Msa1314000:CDS |
| CATGGTTAGGAATATCTTCA+AGG | 0.473639 | 8_4:+12341060 | None:intergenic |
| GACACCGCCGGGGCCTCCAT+CGG | 0.479190 | 8_4:-12342843 | Msa1314000:CDS |
| CGAAGACACATGCCTAAGAA+AGG | 0.481830 | 8_4:-12338293 | Msa1314000:CDS |
| ACCACTAGTTTAGTCAAAAG+TGG | 0.484472 | 8_4:-12342903 | Msa1314000:CDS |
| GTGTCGGATCCTCCAATAAC+GGG | 0.484538 | 8_4:+12340584 | None:intergenic |
| AGCATATGCCTTTGTTGTAT+CGG | 0.484620 | 8_4:+12339469 | None:intergenic |
| GCATATTCGCAGGCCCGTAT+CGG | 0.487152 | 8_4:+12338003 | None:intergenic |
| TTGAAGACTTTAAGAGGAGA+TGG | 0.490311 | 8_4:-12340698 | Msa1314000:CDS |
| TGCTGATGGACTCGAGATAT+GGG | 0.494856 | 8_4:-12338594 | Msa1314000:CDS |
| CTATTAGTTGCTATGATGAA+TGG | 0.495301 | 8_4:+12339122 | None:intergenic |
| GTCTGCGCAAGGAACATGAT+AGG | 0.496596 | 8_4:-12340670 | Msa1314000:CDS |
| GCCTGCTCCCAAAATTGGTA+TGG | 0.499244 | 8_4:+12341190 | None:intergenic |
| TAGGAAGTTGGCTGAAATTG+AGG | 0.499459 | 8_4:-12338066 | Msa1314000:CDS |
| CGAGTCCATCAGCAGCATAA+GGG | 0.499699 | 8_4:+12338603 | None:intergenic |
| GCTAAGTAGCCCACATCCTC+AGG | 0.499939 | 8_4:-12339390 | Msa1314000:CDS |
| GTCTTCGGCTCTTAGTTGGT+CGG | 0.500761 | 8_4:+12338309 | None:intergenic |
| AGGCTTTCAAGAGGTTTGGT+AGG | 0.501480 | 8_4:-12338085 | Msa1314000:CDS |
| CTTCAAGGGTCAAACTTACA+AGG | 0.503229 | 8_4:+12341075 | None:intergenic |
| TAAGTATATATCCTCCATAT+GGG | 0.508811 | 8_4:+12338333 | None:intergenic |
| TCAACTTTGTATGCAACTCA+TGG | 0.512939 | 8_4:-12341031 | Msa1314000:CDS |
| GTTTAAGATGCAAACTTGCT+CGG | 0.515286 | 8_4:-12338429 | Msa1314000:CDS |
| GGGCCGATTCACCATCAGTT+CGG | 0.517224 | 8_4:+12340112 | None:intergenic |
| CCTTGAATCACTTTAGGCGG+TGG | 0.518065 | 8_4:+12340081 | None:intergenic |
| TGTGATTAAGAGAGGCCAAA+AGG | 0.518374 | 8_4:-12342997 | Msa1314000:CDS |
| GGAAGCGGAAAAGGGAAAGT+GGG | 0.519463 | 8_4:-12341245 | Msa1314000:CDS |
| AATGGAGCTGGTGTTTCACT+TGG | 0.519813 | 8_4:+12340743 | None:intergenic |
| TTGGCTCGTCCCGTTATTGG+AGG | 0.520705 | 8_4:-12340593 | Msa1314000:CDS |
| TTTGCAAGGGAGATGATTGC+TGG | 0.521676 | 8_4:-12339931 | Msa1314000:CDS |
| GAAGTTGTAGAGGTGGGTCA+TGG | 0.521933 | 8_4:-12338476 | Msa1314000:CDS |
| AGAGAAATGAAGGTGAGGCT+TGG | 0.522300 | 8_4:-12338130 | Msa1314000:CDS |
| AAGGAACTCTTCCGAACTGA+TGG | 0.522819 | 8_4:-12340123 | Msa1314000:CDS |
| TATATTGAGAATAACATGAC+AGG | 0.522986 | 8_4:-12341107 | Msa1314000:CDS |
| GTTTACAATAACATAAGCCT+TGG | 0.528498 | 8_4:+12339292 | None:intergenic |
| TGCACTTGCAAGGAGTGTCT+TGG | 0.531139 | 8_4:-12339030 | Msa1314000:CDS |
| TACCTTGGACAGAGAAATGA+AGG | 0.533440 | 8_4:-12338140 | Msa1314000:CDS |
| CACCTTGCCTTACCCTCGAA+GGG | 0.535336 | 8_4:-12340564 | Msa1314000:CDS |
| GAGAGCCACAGAAGCGCCGA+TGG | 0.535445 | 8_4:+12342827 | None:intergenic |
| ACTTTAAGAGGAGATGGAAC+GGG | 0.535636 | 8_4:-12340692 | Msa1314000:CDS |
| CTACGATGTTTACAATGACT+TGG | 0.535774 | 8_4:-12340639 | Msa1314000:CDS |
| GACTTTAAGAGGAGATGGAA+CGG | 0.536078 | 8_4:-12340693 | Msa1314000:CDS |
| AGATCCTAAAAGTGAGAGCC+GGG | 0.541238 | 8_4:-12340382 | Msa1314000:CDS |
| ATACAAAGTTGATGGTTCCA+TGG | 0.541812 | 8_4:+12341042 | None:intergenic |
| AGTTTGCTAAGTATACTAGT+AGG | 0.542543 | 8_4:+12340165 | None:intergenic |
| AGAGTATATGGCATATTCGC+AGG | 0.543219 | 8_4:+12337993 | None:intergenic |
| CAGATCCTAAAAGTGAGAGC+CGG | 0.544558 | 8_4:-12340383 | Msa1314000:CDS |
| AATGAATATCATATGCAGAC+TGG | 0.545927 | 8_4:+12341168 | None:intergenic |
| ACACATCATCAAAAGACTTC+AGG | 0.547895 | 8_4:-12339899 | Msa1314000:intron |
| ATGTGGGCTACTTAGCTCAA+TGG | 0.548079 | 8_4:+12339397 | None:intergenic |
| CTATATCCTTCAAGTGAGGA+AGG | 0.549942 | 8_4:-12337969 | Msa1314000:CDS |
| TATTTGTAGGAAGCGGAAAA+GGG | 0.550518 | 8_4:-12341253 | Msa1314000:intron |
| CAGTTACAGCTAAACATGGA+TGG | 0.551540 | 8_4:-12339696 | Msa1314000:CDS |
| CTATAGTAGACTAATGGAGC+TGG | 0.551845 | 8_4:+12340731 | None:intergenic |
| AGTTACAGCTAAACATGGAT+GGG | 0.553988 | 8_4:-12339695 | Msa1314000:CDS |
| ACACCTTGCCTTACCCTCGA+AGG | 0.554207 | 8_4:-12340565 | Msa1314000:CDS |
| GGTGTCGGATCCTCCAATAA+CGG | 0.554285 | 8_4:+12340583 | None:intergenic |
| GACTACCCTTATGCTGCTGA+TGG | 0.554343 | 8_4:-12338608 | Msa1314000:CDS |
| ATCTAGAGGAGTGGTTGTTG+AGG | 0.556260 | 8_4:-12338669 | Msa1314000:intron |
| TTCACCAACTTGTCAGCCAC+TGG | 0.557476 | 8_4:-12339259 | Msa1314000:intron |
| GCTTCTGATGAGCAATACCT+TGG | 0.559094 | 8_4:-12338155 | Msa1314000:CDS |
| CATTAGGTAGTCCTTGATCT+GGG | 0.563331 | 8_4:+12338919 | None:intergenic |
| TGACCGCACATCATCAAAGC+TGG | 0.563563 | 8_4:+12340212 | None:intergenic |
| TAAGAGAGGCCAAAAGGTGA+AGG | 0.563798 | 8_4:-12342991 | Msa1314000:CDS |
| TCAGAAGGCGAAGGCCGTGT+GGG | 0.568063 | 8_4:+12338636 | None:intergenic |
| AGATGGAACGGGTCTGCGCA+AGG | 0.569383 | 8_4:-12340681 | Msa1314000:CDS |
| GAGCTGGTGTTTCACTTGGA+AGG | 0.572257 | 8_4:+12340747 | None:intergenic |
| AGCTATCAGCCTGAGGATGT+GGG | 0.574193 | 8_4:+12339381 | None:intergenic |
| GAGCAGTTAATCAGTCTGCA+TGG | 0.576806 | 8_4:-12339969 | Msa1314000:intron |
| CAATAACATAAGCCTTGGCA+AGG | 0.577264 | 8_4:+12339297 | None:intergenic |
| GAAGACACATGCCTAAGAAA+GGG | 0.578148 | 8_4:-12338292 | Msa1314000:CDS |
| GCTTTCTAAGAACTTTCAGA+AGG | 0.578704 | 8_4:-12338252 | Msa1314000:CDS |
| TTGGAGAGAAGTTGTAGAGG+TGG | 0.579539 | 8_4:-12338483 | Msa1314000:CDS |
| TTCGACATCAATGCCATCAG+TGG | 0.580057 | 8_4:-12342939 | Msa1314000:CDS |
| ATGGTTAGGAATATCTTCAA+GGG | 0.581486 | 8_4:+12341061 | None:intergenic |
| ATGGGATGCTATCAAGTCAT+GGG | 0.582556 | 8_4:-12338576 | Msa1314000:CDS |
| ATCAGTGCTACCGCTTCTGA+TGG | 0.586071 | 8_4:-12342798 | Msa1314000:intron |
| TTCATTGTATCACGATAATG+TGG | 0.586108 | 8_4:+12339059 | None:intergenic |
| AGCCACAGAAGCGCCGATGG+AGG | 0.586958 | 8_4:+12342830 | None:intergenic |
| GTAGTCAAATTACCTCATCA+TGG | 0.587071 | 8_4:-12337862 | Msa1314000:three_prime_UTR |
| AGTCATTGAGAAACCGATAC+GGG | 0.587451 | 8_4:-12338016 | Msa1314000:CDS |
| TTGAGGCAAAGCTCATTGAA+AGG | 0.587750 | 8_4:-12338049 | Msa1314000:CDS |
| TATGGGATGCTATCAAGTCA+TGG | 0.588056 | 8_4:-12338577 | Msa1314000:CDS |
| GTGCTGAAGCAATCCATATG+AGG | 0.588956 | 8_4:+12338384 | None:intergenic |
| TGTACCAGTGGCTGACAAGT+TGG | 0.589181 | 8_4:+12339255 | None:intergenic |
| GAACGTAAACAAAGTCGTCC+CGG | 0.593794 | 8_4:+12340364 | None:intergenic |
| GACTGATGAAGAATTTGCAA+GGG | 0.596706 | 8_4:-12339944 | Msa1314000:CDS |
| TGATGTTTACTTGCCTGCAA+AGG | 0.596844 | 8_4:-12339345 | Msa1314000:CDS |
| GAGTCATTGAGAAACCGATA+CGG | 0.598611 | 8_4:-12338017 | Msa1314000:CDS |
| ATCAGAAGGCGAAGGCCGTG+TGG | 0.599096 | 8_4:+12338635 | None:intergenic |
| GAGGAAGGATTGACTTGCAG+AGG | 0.599561 | 8_4:-12337954 | Msa1314000:CDS |
| ACGCATCTTCTTCGCCAACA+AGG | 0.603727 | 8_4:-12340979 | Msa1314000:intron |
| CTTGAAGATATTCCTAACCA+TGG | 0.606094 | 8_4:-12341059 | Msa1314000:CDS |
| TCCTGACAAGTACGCAAGGT+TGG | 0.606714 | 8_4:-12340612 | Msa1314000:CDS |
| TACGATGTTTACAATGACTT+GGG | 0.606736 | 8_4:-12340638 | Msa1314000:CDS |
| TTGAAAAGTGTGATTAAGAG+AGG | 0.613449 | 8_4:-12343005 | Msa1314000:CDS |
| ATACCTTGAATCACTTTAGG+CGG | 0.614733 | 8_4:+12340078 | None:intergenic |
| AAGGGTAGTCCTCTATCAGA+AGG | 0.619758 | 8_4:+12338621 | None:intergenic |
| TAAGTTATTACCATCAGAAG+CGG | 0.620851 | 8_4:+12342788 | None:intergenic |
| AGCGCCGATGGAGGCCCCGG+CGG | 0.621894 | 8_4:+12342839 | None:intergenic |
| TTTGGTCAATACCCATATGG+AGG | 0.625329 | 8_4:-12338344 | Msa1314000:CDS |
| TTACCAGCTTTGATGATGTG+CGG | 0.627282 | 8_4:-12340215 | Msa1314000:CDS |
| CAGAAGGCGAAGGCCGTGTG+GGG | 0.628083 | 8_4:+12338637 | None:intergenic |
| TATGATTGTAAGGTCAGTGA+GGG | 0.628518 | 8_4:+12338196 | None:intergenic |
| GTTTACTTGCCTGCAAAGGA+AGG | 0.628654 | 8_4:-12339341 | Msa1314000:CDS |
| GAGTGTCTTGGTAAATGCAG+AGG | 0.628961 | 8_4:-12339018 | Msa1314000:CDS |
| GCATGCTATATCTAGAGGAG+TGG | 0.631042 | 8_4:-12338678 | Msa1314000:intron |
| AACTAATAGGCATCTTAGTG+TGG | 0.632027 | 8_4:-12339108 | Msa1314000:CDS |
| GATATGGATATATTGCGTCA+TGG | 0.633604 | 8_4:+12339510 | None:intergenic |
| ACTTTCAGAAGGCGTATCTG+AGG | 0.634152 | 8_4:-12338241 | Msa1314000:CDS |
| AGAACAGTTACAGCTAAACA+TGG | 0.634430 | 8_4:-12339700 | Msa1314000:CDS |
| ACGCAATATATCCATATCTG+AGG | 0.637174 | 8_4:-12339505 | Msa1314000:CDS |
| TGAACATTAATGCACTTGCA+AGG | 0.638089 | 8_4:-12339040 | Msa1314000:CDS |
| AAATGCAGCCGATACAACAA+AGG | 0.638731 | 8_4:-12339477 | Msa1314000:CDS |
| CGCTATAATTGACACCGCCG+GGG | 0.640358 | 8_4:-12342853 | Msa1314000:CDS |
| AGTGTCTTGGTAAATGCAGA+GGG | 0.642136 | 8_4:-12339017 | Msa1314000:CDS |
| AGCAAATTAAGATGTATGCA+GGG | 0.642640 | 8_4:-12343028 | Msa1314000:exon |
| CAATCATAGAAGTCTTGTCA+AGG | 0.644608 | 8_4:-12338181 | Msa1314000:CDS |
| ACATGTCTAACACATACAAG+AGG | 0.648178 | 8_4:+12337754 | None:intergenic |
| AAGAGAGGCCAAAAGGTGAA+GGG | 0.652859 | 8_4:-12342990 | Msa1314000:CDS |
| TGACTGATGAAGAATTTGCA+AGG | 0.653058 | 8_4:-12339945 | Msa1314000:CDS |
| GGTGTCAATTATAGCGCCGG+CGG | 0.653936 | 8_4:+12342860 | None:intergenic |
| TCGAGGGTAAGGCAAGGTGT+CGG | 0.654212 | 8_4:+12340568 | None:intergenic |
| AGCCATTAGAGGCTTTCAAG+AGG | 0.658271 | 8_4:-12338094 | Msa1314000:CDS |
| ACCTTGCCTTACCCTCGAAG+GGG | 0.659200 | 8_4:-12340563 | Msa1314000:CDS |
| ATAATAACATGACCATGATG+AGG | 0.659580 | 8_4:+12337850 | None:intergenic |
| GAGGATCCAACTTCCCCACA+CGG | 0.660763 | 8_4:-12338650 | Msa1314000:CDS |
| TGGACAGAGAAATGAAGGTG+AGG | 0.663208 | 8_4:-12338135 | Msa1314000:CDS |
| GTTACAGCTAAACATGGATG+GGG | 0.665834 | 8_4:-12339694 | Msa1314000:CDS |
| GTGATCCTGACAAGTACGCA+AGG | 0.672694 | 8_4:-12340616 | Msa1314000:CDS |
| AGTCCTCTATCAGAAGGCGA+AGG | 0.676314 | 8_4:+12338627 | None:intergenic |
| TCTGCTATATCCTTCAAGTG+AGG | 0.678855 | 8_4:-12337973 | Msa1314000:CDS |
| CCTTGCCTTACCCTCGAAGG+GGG | 0.681885 | 8_4:-12340562 | Msa1314000:CDS |
| CTATGATTGTAAGGTCAGTG+AGG | 0.688724 | 8_4:+12338195 | None:intergenic |
| TGACCAAAGCTATCAGCCTG+AGG | 0.702011 | 8_4:+12339374 | None:intergenic |
| GTGATTTGAAGAATGCTACA+TGG | 0.707488 | 8_4:-12338454 | Msa1314000:CDS |
| CCAAAAGGTGAAGGGCACAG+TGG | 0.713521 | 8_4:-12342982 | Msa1314000:CDS |
| ATTTGAAGAATGCTACATGG+TGG | 0.753052 | 8_4:-12338451 | Msa1314000:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAATATTTAATGAAATGTA+GGG | + | chr8_4:12338754-12338773 | None:intergenic | 10.0% |
| !! | AAAAATATTTAATGAAATGT+AGG | + | chr8_4:12338755-12338774 | None:intergenic | 10.0% |
| !! | TATTTAACCTTATAATAATT+GGG | + | chr8_4:12338863-12338882 | None:intergenic | 10.0% |
| !! | ATATTTAACCTTATAATAAT+TGG | + | chr8_4:12338864-12338883 | None:intergenic | 10.0% |
| !! | ATATTTAACCTTAAAATAAT+TGG | - | chr8_4:12339009-12339028 | Msa1314000:CDS | 10.0% |
| !! | TATTTAACCTTAAAATAATT+GGG | - | chr8_4:12339010-12339029 | Msa1314000:CDS | 10.0% |
| !! | TAAATATTGTATTATTAGTA+TGG | + | chr8_4:12339307-12339326 | None:intergenic | 10.0% |
| !! | TATAGTAAATAAAAATATCA+CGG | - | chr8_4:12340812-12340831 | Msa1314000:intron | 10.0% |
| !!! | TCTTTTTGTTTTTTTTTTAG+GGG | + | chr8_4:12338539-12338558 | None:intergenic | 15.0% |
| !!! | CTCTTTTTGTTTTTTTTTTA+GGG | + | chr8_4:12338540-12338559 | None:intergenic | 15.0% |
| !!! | ACTCTTTTTGTTTTTTTTTT+AGG | + | chr8_4:12338541-12338560 | None:intergenic | 15.0% |
| !! | AAAAAAAATCTAATTTGAGA+CGG | + | chr8_4:12338628-12338647 | None:intergenic | 15.0% |
| !!! | TCTTTTATAATACTAATAAG+AGG | - | chr8_4:12338680-12338699 | Msa1314000:intron | 15.0% |
| !!! | TATAAGGTTAAATATGTTTT+TGG | - | chr8_4:12338869-12338888 | Msa1314000:intron | 15.0% |
| !! | TTAAAATCCCTAAAATAATA+AGG | + | chr8_4:12338927-12338946 | None:intergenic | 15.0% |
| !! | AAAACATTTATTGAAATGTA+AGG | - | chr8_4:12338946-12338965 | Msa1314000:CDS | 15.0% |
| !!! | TTTAAGGTTAAATATGTTTT+TGG | + | chr8_4:12339004-12339023 | None:intergenic | 15.0% |
| !!! | TCTCTTTTTTTTTTTTTTTG+TGG | + | chr8_4:12339158-12339177 | None:intergenic | 15.0% |
| !! | AAAAACATTTAATGAAATGT+AGG | - | chr8_4:12339228-12339247 | Msa1314000:intron | 15.0% |
| !! | AAAACATTTAATGAAATGTA+GGG | - | chr8_4:12339229-12339248 | Msa1314000:intron | 15.0% |
| !! | CCTTAAAAAAATGATTAATA+AGG | + | chr8_4:12339448-12339467 | None:intergenic | 15.0% |
| !!! | CCTTATTAATCATTTTTTTA+AGG | - | chr8_4:12339445-12339464 | Msa1314000:CDS | 15.0% |
| !!! | ATATTTTAATCCTTAACATT+AGG | - | chr8_4:12339977-12339996 | Msa1314000:intron | 15.0% |
| !!! | TATTTTAATCCTTAACATTA+GGG | - | chr8_4:12339978-12339997 | Msa1314000:intron | 15.0% |
| !! | GAAATATAGTTCATATTTAA+AGG | + | chr8_4:12340019-12340038 | None:intergenic | 15.0% |
| !!! | CTATATTTTAATTGATTTGA+TGG | + | chr8_4:12340055-12340074 | None:intergenic | 15.0% |
| !! | AAAGTTCTATCTTAAATTAA+TGG | - | chr8_4:12340327-12340346 | Msa1314000:CDS | 15.0% |
| !!! | TTACTTGTTATATATAATGT+AGG | - | chr8_4:12341043-12341062 | Msa1314000:CDS | 15.0% |
| !!! | CTAGTAACTAATTTTTATTA+AGG | + | chr8_4:12341951-12341970 | None:intergenic | 15.0% |
| !!! | GATTTTTAAATTTCTATTGT+AGG | + | chr8_4:12342078-12342097 | None:intergenic | 15.0% |
| !! | CAATAGAAATTTAAAAATCT+TGG | - | chr8_4:12342079-12342098 | Msa1314000:intron | 15.0% |
| !! | ATCATTATGATAAGTTAATG+AGG | + | chr8_4:12338394-12338413 | None:intergenic | 20.0% |
| !!! | TATCATAATGATTTTTGACT+TGG | - | chr8_4:12338402-12338421 | Msa1314000:CDS | 20.0% |
| !!! | ATCATAATGATTTTTGACTT+GGG | - | chr8_4:12338403-12338422 | Msa1314000:CDS | 20.0% |
| !! | AAAAAACATCTGATTTAAGA+CGG | + | chr8_4:12338599-12338618 | None:intergenic | 20.0% |
| !!! | AGAATAGTCCTTATTATTTT+AGG | - | chr8_4:12338916-12338935 | Msa1314000:CDS | 20.0% |
| !!! | GAATAGTCCTTATTATTTTA+GGG | - | chr8_4:12338917-12338936 | Msa1314000:CDS | 20.0% |
| !!! | CTTTTTTTTTTTTTTTGTGG+TGG | + | chr8_4:12339155-12339174 | None:intergenic | 20.0% |
| !! | AAAAAAAGAGAATTAATAGC+AGG | - | chr8_4:12339167-12339186 | Msa1314000:intron | 20.0% |
| !! | AAAAAAGAGAATTAATAGCA+GGG | - | chr8_4:12339168-12339187 | Msa1314000:intron | 20.0% |
| !! | TGATTGAAATACAATAGATA+AGG | + | chr8_4:12339352-12339371 | None:intergenic | 20.0% |
| !!! | GGTTGATTTTAATGATAAAT+AGG | + | chr8_4:12339427-12339446 | None:intergenic | 20.0% |
| !!! | CATATGATATTCATTTTGAA+TGG | - | chr8_4:12339667-12339686 | Msa1314000:intron | 20.0% |
| !!! | AAATTATAACCTTTTTTAGC+TGG | + | chr8_4:12340306-12340325 | None:intergenic | 20.0% |
| !! | TGAAAATATAGTATGTTAAG+TGG | + | chr8_4:12341007-12341026 | None:intergenic | 20.0% |
| !!! | ATCATTTTCTTACAAAATGA+TGG | - | chr8_4:12341390-12341409 | Msa1314000:intron | 20.0% |
| !! | TATAGAATCAACATTCTTAA+TGG | - | chr8_4:12341836-12341855 | Msa1314000:intron | 20.0% |
| !! | ATAGAATCAACATTCTTAAT+GGG | - | chr8_4:12341837-12341856 | Msa1314000:intron | 20.0% |
| !! | AGTCATTCATTAGTTAAAAA+AGG | - | chr8_4:12341969-12341988 | Msa1314000:intron | 20.0% |
| !! | ATTATGTTTGTTTGTTTGTT+TGG | - | chr8_4:12342995-12343014 | Msa1314000:CDS | 20.0% |
| ! | TTTCAAGCTTCTTTAAATCA+CGG | - | chr8_4:12338151-12338170 | Msa1314000:CDS | 25.0% |
| !! | GTTGCATCAATAACATTTTA+AGG | + | chr8_4:12338491-12338510 | None:intergenic | 25.0% |
| !!! | ATGTAGGGATTATTTTTCAA+AGG | - | chr8_4:12339244-12339263 | Msa1314000:intron | 25.0% |
| !!! | TGTAGGGATTATTTTTCAAA+GGG | - | chr8_4:12339245-12339264 | Msa1314000:intron | 25.0% |
| !!! | TGTCACATTTAAGTTTTATG+CGG | + | chr8_4:12339495-12339514 | None:intergenic | 25.0% |
| ! | CAAACTTGTAACATATTTGT+AGG | - | chr8_4:12339561-12339580 | Msa1314000:intron | 25.0% |
| ! | GGAGATAAAACTTATATTGA+AGG | - | chr8_4:12339603-12339622 | Msa1314000:intron | 25.0% |
| !! | TTTTGAATGGAATAGTGATA+TGG | - | chr8_4:12339680-12339699 | Msa1314000:CDS | 25.0% |
| ! | TTTGAATGGAATAGTGATAT+GGG | - | chr8_4:12339681-12339700 | Msa1314000:CDS | 25.0% |
| ! | TATATTGAGAATAACATGAC+AGG | - | chr8_4:12339720-12339739 | Msa1314000:CDS | 25.0% |
| ! | TTTAACATGCACGATAAATA+TGG | + | chr8_4:12339885-12339904 | None:intergenic | 25.0% |
| ! | ATAGTGAAATGTTAACACAT+TGG | - | chr8_4:12339906-12339925 | Msa1314000:CDS | 25.0% |
| !!! | AGAGAAAATGTTTTGATCAT+AGG | + | chr8_4:12340354-12340373 | None:intergenic | 25.0% |
| ! | TGATTAACTGCTCAAAATAA+GGG | + | chr8_4:12340851-12340870 | None:intergenic | 25.0% |
| ! | GAAGCAAAAGTTTATGAATA+GGG | + | chr8_4:12341749-12341768 | None:intergenic | 25.0% |
| ! | ATTGTCTGCTGTATTATATA+AGG | - | chr8_4:12341875-12341894 | Msa1314000:intron | 25.0% |
| ! | TGCTGTATTATATAAGGATT+GGG | - | chr8_4:12341881-12341900 | Msa1314000:intron | 25.0% |
| ! | TACCTAATGATCTACTTAAA+AGG | - | chr8_4:12341922-12341941 | Msa1314000:intron | 25.0% |
| !!! | TACCTTTTAAGTAGATCATT+AGG | + | chr8_4:12341927-12341946 | None:intergenic | 25.0% |
| ! | TAAGTATATATCCTCCATAT+GGG | + | chr8_4:12342497-12342516 | None:intergenic | 25.0% |
| ! | TTAAGTATATATCCTCCATA+TGG | + | chr8_4:12342498-12342517 | None:intergenic | 25.0% |
| ! | CATTAAATGGAGATACTATT+AGG | + | chr8_4:12342903-12342922 | None:intergenic | 25.0% |
| ! | AAACCATGAAACTCATTAAA+TGG | + | chr8_4:12342916-12342935 | None:intergenic | 25.0% |
| AGCAAATTAAGATGTATGCA+GGG | - | chr8_4:12337799-12337818 | Msa1314000:three_prime_UTR | 30.0% | |
| ! | TTGAAAAGTGTGATTAAGAG+AGG | - | chr8_4:12337822-12337841 | Msa1314000:three_prime_UTR | 30.0% |
| ! | TTTAGTCAAAAGTGGATTCA+AGG | - | chr8_4:12337932-12337951 | Msa1314000:CDS | 30.0% |
| TAAGTTATTACCATCAGAAG+CGG | + | chr8_4:12338042-12338061 | None:intergenic | 30.0% | |
| TAATAGCATGTTTGTGTAAG+CGG | - | chr8_4:12338076-12338095 | Msa1314000:CDS | 30.0% | |
| ! | TTATGATGTGTTTGGAATCA+CGG | + | chr8_4:12338213-12338232 | None:intergenic | 30.0% |
| !! | ATGTAGTCTTATGATGTGTT+TGG | + | chr8_4:12338221-12338240 | None:intergenic | 30.0% |
| ! | GGGAAAATTACTCTTTTTGT+TGG | + | chr8_4:12338519-12338538 | None:intergenic | 30.0% |
| ! | AAAATCTAATTTGAGACGGA+GGG | + | chr8_4:12338624-12338643 | None:intergenic | 30.0% |
| ! | AAAAATCTAATTTGAGACGG+AGG | + | chr8_4:12338625-12338644 | None:intergenic | 30.0% |
| !! | GCAGAGACTAATTTTGATAA+CGG | + | chr8_4:12338798-12338817 | None:intergenic | 30.0% |
| AACTGCTGTTAATTCTCTAA+CGG | + | chr8_4:12339061-12339080 | None:intergenic | 30.0% | |
| GACAATGCATAATATATGCA+AGG | - | chr8_4:12339110-12339129 | Msa1314000:CDS | 30.0% | |
| !!! | TTTTTTTTTTTTGTGGTGGC+CGG | + | chr8_4:12339151-12339170 | None:intergenic | 30.0% |
| !! | GTAGGGATTATTTTTCAAAG+GGG | - | chr8_4:12339246-12339265 | Msa1314000:intron | 30.0% |
| TGTAACATATTTGTAGGAAG+CGG | - | chr8_4:12339567-12339586 | Msa1314000:intron | 30.0% | |
| !! | TGTTACTTCCATACCAATTT+TGG | - | chr8_4:12339629-12339648 | Msa1314000:intron | 30.0% |
| ! | GTTACTTCCATACCAATTTT+GGG | - | chr8_4:12339630-12339649 | Msa1314000:intron | 30.0% |
| AATGAATATCATATGCAGAC+TGG | + | chr8_4:12339662-12339681 | None:intergenic | 30.0% | |
| TTCTCAATATAAAATGCTCC+TGG | + | chr8_4:12339711-12339730 | None:intergenic | 30.0% | |
| ATGGTTAGGAATATCTTCAA+GGG | + | chr8_4:12339769-12339788 | None:intergenic | 30.0% | |
| TGGTATATTCATTACCTTGT+TGG | + | chr8_4:12339865-12339884 | None:intergenic | 30.0% | |
| TCTTCTCTATAGTAGACTAA+TGG | + | chr8_4:12340105-12340124 | None:intergenic | 30.0% | |
| GAAGAATTGAAGACTTTAAG+AGG | - | chr8_4:12340123-12340142 | Msa1314000:CDS | 30.0% | |
| TACGATGTTTACAATGACTT+GGG | - | chr8_4:12340189-12340208 | Msa1314000:CDS | 30.0% | |
| TCACATACAAAATTGAAGAC+AGG | + | chr8_4:12340423-12340442 | None:intergenic | 30.0% | |
| GTAATTGCAGATTGTAATTG+AGG | + | chr8_4:12340569-12340588 | None:intergenic | 30.0% | |
| !! | AGTTTGCTAAGTATACTAGT+AGG | + | chr8_4:12340665-12340684 | None:intergenic | 30.0% |
| AGTTCCTTGAAAAATGGTAT+GGG | + | chr8_4:12340692-12340711 | None:intergenic | 30.0% | |
| TAGATACCTTGAATCACTTT+AGG | + | chr8_4:12340755-12340774 | None:intergenic | 30.0% | |
| CTATACGAAAATACATTGCT+AGG | + | chr8_4:12340797-12340816 | None:intergenic | 30.0% | |
| CTGATTAACTGCTCAAAATA+AGG | + | chr8_4:12340852-12340871 | None:intergenic | 30.0% | |
| !!! | GTATGTAAAGCTTGTTGTTT+TGG | + | chr8_4:12341290-12341309 | None:intergenic | 30.0% |
| !! | GCATTTATTTTCCTCAGATA+TGG | + | chr8_4:12341336-12341355 | None:intergenic | 30.0% |
| GTTTACAATAACATAAGCCT+TGG | + | chr8_4:12341538-12341557 | None:intergenic | 30.0% | |
| TGAATATCTACATGTGTAAC+AGG | - | chr8_4:12341658-12341677 | Msa1314000:intron | 30.0% | |
| CTATTAGTTGCTATGATGAA+TGG | + | chr8_4:12341708-12341727 | None:intergenic | 30.0% | |
| CATTCATCATAGCAACTAAT+AGG | - | chr8_4:12341706-12341725 | Msa1314000:intron | 30.0% | |
| GGAAGCAAAAGTTTATGAAT+AGG | + | chr8_4:12341750-12341769 | None:intergenic | 30.0% | |
| TTCATTGTATCACGATAATG+TGG | + | chr8_4:12341771-12341790 | None:intergenic | 30.0% | |
| CTGCTGTATTATATAAGGAT+TGG | - | chr8_4:12341880-12341899 | Msa1314000:intron | 30.0% | |
| !! | AATTTTGGTCAATACCCATA+TGG | - | chr8_4:12342480-12342499 | Msa1314000:intron | 30.0% |
| ACAAGACTTCTATGATTGTA+AGG | + | chr8_4:12342644-12342663 | None:intergenic | 30.0% | |
| TCTCCATTTAATGAGTTTCA+TGG | - | chr8_4:12342910-12342929 | Msa1314000:CDS | 30.0% | |
| ATAATAACATGACCATGATG+AGG | + | chr8_4:12342980-12342999 | None:intergenic | 30.0% | |
| TTGTTTGTTTGTTTGGTTGT+TGG | - | chr8_4:12343002-12343021 | Msa1314000:CDS | 30.0% | |
| CAGCAAATTAAGATGTATGC+AGG | - | chr8_4:12337798-12337817 | Msa1314000:three_prime_UTR | 35.0% | |
| ! | ACCACTAGTTTAGTCAAAAG+TGG | - | chr8_4:12337924-12337943 | Msa1314000:exon | 35.0% |
| !! | TCCACTTTTGACTAAACTAG+TGG | + | chr8_4:12337928-12337947 | None:intergenic | 35.0% |
| CCAAACATTATATGTGTGTG+CGG | + | chr8_4:12338268-12338287 | None:intergenic | 35.0% | |
| ! | AACATCTGATTTAAGACGGA+GGG | + | chr8_4:12338595-12338614 | None:intergenic | 35.0% |
| ! | AAACATCTGATTTAAGACGG+AGG | + | chr8_4:12338596-12338615 | None:intergenic | 35.0% |
| ! | AAATCTAATTTGAGACGGAG+GGG | + | chr8_4:12338623-12338642 | None:intergenic | 35.0% |
| TGTAGGGACTATTCTTCAAA+GGG | + | chr8_4:12338738-12338757 | None:intergenic | 35.0% | |
| ATGTAGGGACTATTCTTCAA+AGG | + | chr8_4:12338739-12338758 | None:intergenic | 35.0% | |
| !! | GATAACGGAGATAAAATGTG+AGG | + | chr8_4:12338783-12338802 | None:intergenic | 35.0% |
| CTCTGCTGTTAATTCTCTAA+CGG | - | chr8_4:12338812-12338831 | Msa1314000:intron | 35.0% | |
| AGTGGGTCCCAATTATTATA+AGG | - | chr8_4:12338853-12338872 | Msa1314000:intron | 35.0% | |
| TTCAAAGTCACGCAAAATGT+AGG | - | chr8_4:12338976-12338995 | Msa1314000:CDS | 35.0% | |
| TCAAAGTCACGCAAAATGTA+GGG | - | chr8_4:12338977-12338996 | Msa1314000:CDS | 35.0% | |
| !! | AGTGGGTCCCAATTATTTTA+AGG | + | chr8_4:12339020-12339039 | None:intergenic | 35.0% |
| GTTAGAGAATTAACAGCAGT+TGG | - | chr8_4:12339060-12339079 | Msa1314000:CDS | 35.0% | |
| TGCATAATATATGCAAGGTC+TGG | - | chr8_4:12339115-12339134 | Msa1314000:CDS | 35.0% | |
| GCATAATATATGCAAGGTCT+GGG | - | chr8_4:12339116-12339135 | Msa1314000:CDS | 35.0% | |
| CATAATATATGCAAGGTCTG+GGG | - | chr8_4:12339117-12339136 | Msa1314000:CDS | 35.0% | |
| !!! | TTTTTTTTTTTGTGGTGGCC+GGG | + | chr8_4:12339150-12339169 | None:intergenic | 35.0% |
| GATTGCGGAGATAAAATGTT+AGG | - | chr8_4:12339200-12339219 | Msa1314000:intron | 35.0% | |
| ATATTTGTAGGAAGCGGAAA+AGG | - | chr8_4:12339573-12339592 | Msa1314000:intron | 35.0% | |
| TATTTGTAGGAAGCGGAAAA+GGG | - | chr8_4:12339574-12339593 | Msa1314000:intron | 35.0% | |
| CATGGTTAGGAATATCTTCA+AGG | + | chr8_4:12339770-12339789 | None:intergenic | 35.0% | |
| CTTGAAGATATTCCTAACCA+TGG | - | chr8_4:12339768-12339787 | Msa1314000:intron | 35.0% | |
| !! | ATACAAAGTTGATGGTTCCA+TGG | + | chr8_4:12339788-12339807 | None:intergenic | 35.0% |
| TGAGTTGCATACAAAGTTGA+TGG | + | chr8_4:12339796-12339815 | None:intergenic | 35.0% | |
| TCAACTTTGTATGCAACTCA+TGG | - | chr8_4:12339796-12339815 | Msa1314000:intron | 35.0% | |
| TAACAAGTGCCCTAATGTTA+AGG | + | chr8_4:12339990-12340009 | None:intergenic | 35.0% | |
| !! | ATTTGATGGTGTCAGATTTC+GGG | + | chr8_4:12340041-12340060 | None:intergenic | 35.0% |
| !! | GATTTGATGGTGTCAGATTT+CGG | + | chr8_4:12340042-12340061 | None:intergenic | 35.0% |
| ! | TTGAAGACTTTAAGAGGAGA+TGG | - | chr8_4:12340129-12340148 | Msa1314000:CDS | 35.0% |
| CTACGATGTTTACAATGACT+TGG | - | chr8_4:12340188-12340207 | Msa1314000:CDS | 35.0% | |
| TCATCAAAGCTGGTAAATTC+TGG | + | chr8_4:12340608-12340627 | None:intergenic | 35.0% | |
| GTTCCTTGAAAAATGGTATG+GGG | + | chr8_4:12340691-12340710 | None:intergenic | 35.0% | |
| GAGTTCCTTGAAAAATGGTA+TGG | + | chr8_4:12340693-12340712 | None:intergenic | 35.0% | |
| ATACCTTGAATCACTTTAGG+CGG | + | chr8_4:12340752-12340771 | None:intergenic | 35.0% | |
| TGACTGATGAAGAATTTGCA+AGG | - | chr8_4:12340882-12340901 | Msa1314000:intron | 35.0% | |
| GACTGATGAAGAATTTGCAA+GGG | - | chr8_4:12340883-12340902 | Msa1314000:intron | 35.0% | |
| !!! | TGAAGTCTTTTGATGATGTG+TGG | + | chr8_4:12340929-12340948 | None:intergenic | 35.0% |
| ACACATCATCAAAAGACTTC+AGG | - | chr8_4:12340928-12340947 | Msa1314000:intron | 35.0% | |
| AGCAAGCTAAATGCTGAATA+TGG | - | chr8_4:12341080-12341099 | Msa1314000:CDS | 35.0% | |
| GTTTAGCTGTAACTGTTCTT+TGG | + | chr8_4:12341126-12341145 | None:intergenic | 35.0% | |
| AGAACAGTTACAGCTAAACA+TGG | - | chr8_4:12341127-12341146 | Msa1314000:CDS | 35.0% | |
| AGTTACAGCTAAACATGGAT+GGG | - | chr8_4:12341132-12341151 | Msa1314000:CDS | 35.0% | |
| GATATGGATATATTGCGTCA+TGG | + | chr8_4:12341320-12341339 | None:intergenic | 35.0% | |
| ACGCAATATATCCATATCTG+AGG | - | chr8_4:12341322-12341341 | Msa1314000:intron | 35.0% | |
| ! | AGCATATGCCTTTGTTGTAT+CGG | + | chr8_4:12341361-12341380 | None:intergenic | 35.0% |
| !! | AAGGTGTTGAAGCTTCTATT+TGG | - | chr8_4:12341505-12341524 | Msa1314000:intron | 35.0% |
| CATCAACATAATTGTACCAG+TGG | + | chr8_4:12341587-12341606 | None:intergenic | 35.0% | |
| AACTAATAGGCATCTTAGTG+TGG | - | chr8_4:12341719-12341738 | Msa1314000:intron | 35.0% | |
| TGAACATTAATGCACTTGCA+AGG | - | chr8_4:12341787-12341806 | Msa1314000:intron | 35.0% | |
| ! | AGTAACCACGATCTAAGATA+AGG | - | chr8_4:12342006-12342025 | Msa1314000:intron | 35.0% |
| TCTTTGCATGCTATATCTAG+AGG | - | chr8_4:12342144-12342163 | Msa1314000:intron | 35.0% | |
| ! | ATTCTGAACTGCAAGCATTT+TGG | - | chr8_4:12342325-12342344 | Msa1314000:intron | 35.0% |
| !! | ATTTTGGAGAGAAGTTGTAG+AGG | - | chr8_4:12342341-12342360 | Msa1314000:intron | 35.0% |
| GTGATTTGAAGAATGCTACA+TGG | - | chr8_4:12342373-12342392 | Msa1314000:intron | 35.0% | |
| ATTTGAAGAATGCTACATGG+TGG | - | chr8_4:12342376-12342395 | Msa1314000:intron | 35.0% | |
| ! | GTTTAAGATGCAAACTTGCT+CGG | - | chr8_4:12342398-12342417 | Msa1314000:intron | 35.0% |
| ! | CATCATGCAGCTGTTAATTT+TGG | - | chr8_4:12342465-12342484 | Msa1314000:intron | 35.0% |
| ! | GCTTTCTAAGAACTTTCAGA+AGG | - | chr8_4:12342575-12342594 | Msa1314000:intron | 35.0% |
| !!! | TCAGTGAGGGTATCATTTTT+CGG | + | chr8_4:12342621-12342640 | None:intergenic | 35.0% |
| TATGATTGTAAGGTCAGTGA+GGG | + | chr8_4:12342634-12342653 | None:intergenic | 35.0% | |
| ! | CAATCATAGAAGTCTTGTCA+AGG | - | chr8_4:12342646-12342665 | Msa1314000:intron | 35.0% |
| GAAGGATATAGCAGAGTATA+TGG | + | chr8_4:12342849-12342868 | None:intergenic | 35.0% | |
| GTAGTCAAATTACCTCATCA+TGG | - | chr8_4:12342965-12342984 | Msa1314000:CDS | 35.0% | |
| TGTGATTAAGAGAGGCCAAA+AGG | - | chr8_4:12337830-12337849 | Msa1314000:three_prime_UTR | 40.0% | |
| CCGCACACACATATAATGTT+TGG | - | chr8_4:12338265-12338284 | Msa1314000:CDS | 40.0% | |
| GTAGGGACTATTCTTCAAAG+GGG | + | chr8_4:12338737-12338756 | None:intergenic | 40.0% | |
| AATGCTGATGTGGTAGTTAG+TGG | - | chr8_4:12338835-12338854 | Msa1314000:intron | 40.0% | |
| ATGCTGATGTGGTAGTTAGT+GGG | - | chr8_4:12338836-12338855 | Msa1314000:intron | 40.0% | |
| ATGTTGATGTGGCAGTTAGT+GGG | + | chr8_4:12339037-12339056 | None:intergenic | 40.0% | |
| AATGTTGATGTGGCAGTTAG+TGG | + | chr8_4:12339038-12339057 | None:intergenic | 40.0% | |
| TCTCTAACGGAATGTTGATG+TGG | + | chr8_4:12339048-12339067 | None:intergenic | 40.0% | |
| ! | TGAGCTTAACTCAGTTGGTA+TGG | - | chr8_4:12339088-12339107 | Msa1314000:CDS | 40.0% |
| !!! | TTTTTTTTTTGTGGTGGCCG+GGG | + | chr8_4:12339149-12339168 | None:intergenic | 40.0% |
| !!! | GCAGGGACTTATTTTGATTG+CGG | - | chr8_4:12339185-12339204 | Msa1314000:intron | 40.0% |
| ATGTGACACCTAATGTGAGA+CGG | - | chr8_4:12339507-12339526 | Msa1314000:CDS | 40.0% | |
| AATAGTGATATGGGAGTTCC+AGG | - | chr8_4:12339690-12339709 | Msa1314000:CDS | 40.0% | |
| CTTCAAGGGTCAAACTTACA+AGG | + | chr8_4:12339755-12339774 | None:intergenic | 40.0% | |
| !! | AAGTTGATGGTTCCATGGTT+AGG | + | chr8_4:12339783-12339802 | None:intergenic | 40.0% |
| CTATAGTAGACTAATGGAGC+TGG | + | chr8_4:12340099-12340118 | None:intergenic | 40.0% | |
| ! | GACTTTAAGAGGAGATGGAA+CGG | - | chr8_4:12340134-12340153 | Msa1314000:CDS | 40.0% |
| ! | ACTTTAAGAGGAGATGGAAC+GGG | - | chr8_4:12340135-12340154 | Msa1314000:CDS | 40.0% |
| ! | GTTCCAAGAGATGAAGCATT+TGG | - | chr8_4:12340482-12340501 | Msa1314000:intron | 40.0% |
| TGACCAAATGCTTCATCTCT+TGG | + | chr8_4:12340488-12340507 | None:intergenic | 40.0% | |
| !! | TTACCAGCTTTGATGATGTG+CGG | - | chr8_4:12340612-12340631 | Msa1314000:CDS | 40.0% |
| !! | GATGTGCGGTCATTTTATGA+CGG | - | chr8_4:12340626-12340645 | Msa1314000:CDS | 40.0% |
| !! | TAGCCCCATACCATTTTTCA+AGG | - | chr8_4:12340685-12340704 | Msa1314000:CDS | 40.0% |
| CGGAAGAGTTCCTTGAAAAA+TGG | + | chr8_4:12340698-12340717 | None:intergenic | 40.0% | |
| TTTAGGCGGTGGAAACTTTA+GGG | + | chr8_4:12340738-12340757 | None:intergenic | 40.0% | |
| !! | CATTTAGCTTGCTCTTTGGT+GGG | + | chr8_4:12341073-12341092 | None:intergenic | 40.0% |
| !! | TCAGCATTTAGCTTGCTCTT+TGG | + | chr8_4:12341077-12341096 | None:intergenic | 40.0% |
| CAGTTACAGCTAAACATGGA+TGG | - | chr8_4:12341131-12341150 | Msa1314000:CDS | 40.0% | |
| GTTACAGCTAAACATGGATG+GGG | - | chr8_4:12341133-12341152 | Msa1314000:CDS | 40.0% | |
| ACTGTGCAAATGCTATGTTG+TGG | - | chr8_4:12341208-12341227 | Msa1314000:CDS | 40.0% | |
| AAATGCAGCCGATACAACAA+AGG | - | chr8_4:12341350-12341369 | Msa1314000:intron | 40.0% | |
| CTACTTAGCTCAATGGCTAA+TGG | + | chr8_4:12341426-12341445 | None:intergenic | 40.0% | |
| TGATGTTTACTTGCCTGCAA+AGG | - | chr8_4:12341482-12341501 | Msa1314000:intron | 40.0% | |
| CAATAACATAAGCCTTGGCA+AGG | + | chr8_4:12341533-12341552 | None:intergenic | 40.0% | |
| AGTGTCTTGGTAAATGCAGA+GGG | - | chr8_4:12341810-12341829 | Msa1314000:intron | 40.0% | |
| CATTAGGTAGTCCTTGATCT+GGG | + | chr8_4:12341911-12341930 | None:intergenic | 40.0% | |
| TCATTAGGTAGTCCTTGATC+TGG | + | chr8_4:12341912-12341931 | None:intergenic | 40.0% | |
| TGATGCCTTATCTTAGATCG+TGG | + | chr8_4:12342014-12342033 | None:intergenic | 40.0% | |
| CTAGCTATTGTAGAGAATCG+CGG | + | chr8_4:12342048-12342067 | None:intergenic | 40.0% | |
| TATGGGATGCTATCAAGTCA+TGG | - | chr8_4:12342250-12342269 | Msa1314000:intron | 40.0% | |
| ATGGGATGCTATCAAGTCAT+GGG | - | chr8_4:12342251-12342270 | Msa1314000:intron | 40.0% | |
| AAGCTTGCACTATCCTCATA+TGG | - | chr8_4:12342430-12342449 | Msa1314000:intron | 40.0% | |
| TTTGGTCAATACCCATATGG+AGG | - | chr8_4:12342483-12342502 | Msa1314000:intron | 40.0% | |
| CTTTCTTAGGCATGTGTCTT+CGG | + | chr8_4:12342536-12342555 | None:intergenic | 40.0% | |
| GAAGACACATGCCTAAGAAA+GGG | - | chr8_4:12342535-12342554 | Msa1314000:intron | 40.0% | |
| TACTCAGTAGACCCTTTCTT+AGG | + | chr8_4:12342549-12342568 | None:intergenic | 40.0% | |
| CTATGATTGTAAGGTCAGTG+AGG | + | chr8_4:12342635-12342654 | None:intergenic | 40.0% | |
| TACCTTGGACAGAGAAATGA+AGG | - | chr8_4:12342687-12342706 | Msa1314000:intron | 40.0% | |
| TTCTGATTCACAGCCATTAG+AGG | - | chr8_4:12342722-12342741 | Msa1314000:intron | 40.0% | |
| AACCTCTTGAAAGCCTCTAA+TGG | + | chr8_4:12342738-12342757 | None:intergenic | 40.0% | |
| TTAGAGGCTTTCAAGAGGTT+TGG | - | chr8_4:12342738-12342757 | Msa1314000:intron | 40.0% | |
| TAGGAAGTTGGCTGAAATTG+AGG | - | chr8_4:12342761-12342780 | Msa1314000:intron | 40.0% | |
| TTGAGGCAAAGCTCATTGAA+AGG | - | chr8_4:12342778-12342797 | Msa1314000:intron | 40.0% | |
| GAGTCATTGAGAAACCGATA+CGG | - | chr8_4:12342810-12342829 | Msa1314000:CDS | 40.0% | |
| AGTCATTGAGAAACCGATAC+GGG | - | chr8_4:12342811-12342830 | Msa1314000:CDS | 40.0% | |
| AGAGTATATGGCATATTCGC+AGG | + | chr8_4:12342837-12342856 | None:intergenic | 40.0% | |
| TCTGCTATATCCTTCAAGTG+AGG | - | chr8_4:12342854-12342873 | Msa1314000:CDS | 40.0% | |
| CTATATCCTTCAAGTGAGGA+AGG | - | chr8_4:12342858-12342877 | Msa1314000:CDS | 40.0% | |
| TAAGAGAGGCCAAAAGGTGA+AGG | - | chr8_4:12337836-12337855 | Msa1314000:three_prime_UTR | 45.0% | |
| AAGAGAGGCCAAAAGGTGAA+GGG | - | chr8_4:12337837-12337856 | Msa1314000:three_prime_UTR | 45.0% | |
| TTCGACATCAATGCCATCAG+TGG | - | chr8_4:12337888-12337907 | Msa1314000:three_prime_UTR | 45.0% | |
| AGCGACAAATATACCCACGT+TGG | - | chr8_4:12338114-12338133 | Msa1314000:CDS | 45.0% | |
| GACAAATATACCCACGTTGG+AGG | - | chr8_4:12338117-12338136 | Msa1314000:CDS | 45.0% | |
| AATCACGGTGAGAAATGCCT+AGG | - | chr8_4:12338166-12338185 | Msa1314000:CDS | 45.0% | |
| ATCACGGTGAGAAATGCCTA+GGG | - | chr8_4:12338167-12338186 | Msa1314000:CDS | 45.0% | |
| ! | TCAAAGGGGCGCAAAATGTA+AGG | + | chr8_4:12339260-12339279 | None:intergenic | 45.0% |
| TCTCTAACGGAATGCTGATG+TGG | - | chr8_4:12338825-12338844 | Msa1314000:intron | 45.0% | |
| ! | TCAAAGGGGCGCAAAATGTA+AGG | - | chr8_4:12339260-12339279 | Msa1314000:CDS | 45.0% |
| !! | TCCATACCAATTTTGGGAGC+AGG | - | chr8_4:12339636-12339655 | Msa1314000:intron | 45.0% |
| AATGGAGCTGGTGTTTCACT+TGG | + | chr8_4:12340087-12340106 | None:intergenic | 45.0% | |
| GGCAGGAAACCAGCTAAAAA+AGG | - | chr8_4:12340294-12340313 | Msa1314000:CDS | 45.0% | |
| CAGATCCTAAAAGTGAGAGC+CGG | - | chr8_4:12340444-12340463 | Msa1314000:intron | 45.0% | |
| AGATCCTAAAAGTGAGAGCC+GGG | - | chr8_4:12340445-12340464 | Msa1314000:intron | 45.0% | |
| GAACGTAAACAAAGTCGTCC+CGG | + | chr8_4:12340466-12340485 | None:intergenic | 45.0% | |
| !! | TGCGGTCATTTTATGACGGT+GGG | - | chr8_4:12340630-12340649 | Msa1314000:CDS | 45.0% |
| AAGGAACTCTTCCGAACTGA+TGG | - | chr8_4:12340704-12340723 | Msa1314000:CDS | 45.0% | |
| ! | CTTCCGAACTGATGGTGAAT+CGG | - | chr8_4:12340712-12340731 | Msa1314000:CDS | 45.0% |
| CTTTAGGCGGTGGAAACTTT+AGG | + | chr8_4:12340739-12340758 | None:intergenic | 45.0% | |
| GAGCAGTTAATCAGTCTGCA+TGG | - | chr8_4:12340858-12340877 | Msa1314000:intron | 45.0% | |
| TTTGCAAGGGAGATGATTGC+TGG | - | chr8_4:12340896-12340915 | Msa1314000:intron | 45.0% | |
| !! | GCATTTAGCTTGCTCTTTGG+TGG | + | chr8_4:12341074-12341093 | None:intergenic | 45.0% |
| ! | ATGTGGGCTACTTAGCTCAA+TGG | + | chr8_4:12341433-12341452 | None:intergenic | 45.0% |
| GTTTACTTGCCTGCAAAGGA+AGG | - | chr8_4:12341486-12341505 | Msa1314000:intron | 45.0% | |
| ! | TTCTATTTGGCTCCTTGCCA+AGG | - | chr8_4:12341518-12341537 | Msa1314000:intron | 45.0% |
| GAGTGTCTTGGTAAATGCAG+AGG | - | chr8_4:12341809-12341828 | Msa1314000:intron | 45.0% | |
| ! | GATTGGGTTTTCCCAGATCA+AGG | - | chr8_4:12341897-12341916 | Msa1314000:intron | 45.0% |
| CGCGATTCTCTACAATAGCT+AGG | - | chr8_4:12342046-12342065 | Msa1314000:intron | 45.0% | |
| GCATGCTATATCTAGAGGAG+TGG | - | chr8_4:12342149-12342168 | Msa1314000:intron | 45.0% | |
| ATCTAGAGGAGTGGTTGTTG+AGG | - | chr8_4:12342158-12342177 | Msa1314000:intron | 45.0% | |
| AAGGGTAGTCCTCTATCAGA+AGG | + | chr8_4:12342209-12342228 | None:intergenic | 45.0% | |
| !! | TGCTGATGGACTCGAGATAT+GGG | - | chr8_4:12342233-12342252 | Msa1314000:intron | 45.0% |
| TTGGAGAGAAGTTGTAGAGG+TGG | - | chr8_4:12342344-12342363 | Msa1314000:intron | 45.0% | |
| TGGAGAGAAGTTGTAGAGGT+GGG | - | chr8_4:12342345-12342364 | Msa1314000:intron | 45.0% | |
| GTGCTGAAGCAATCCATATG+AGG | + | chr8_4:12342446-12342465 | None:intergenic | 45.0% | |
| ATGTGTCTTCGGCTCTTAGT+TGG | + | chr8_4:12342525-12342544 | None:intergenic | 45.0% | |
| CGAAGACACATGCCTAAGAA+AGG | - | chr8_4:12342534-12342553 | Msa1314000:intron | 45.0% | |
| ! | ACTTTCAGAAGGCGTATCTG+AGG | - | chr8_4:12342586-12342605 | Msa1314000:intron | 45.0% |
| GCTTCTGATGAGCAATACCT+TGG | - | chr8_4:12342672-12342691 | Msa1314000:intron | 45.0% | |
| CACCTTCATTTCTCTGTCCA+AGG | + | chr8_4:12342692-12342711 | None:intergenic | 45.0% | |
| TGGACAGAGAAATGAAGGTG+AGG | - | chr8_4:12342692-12342711 | Msa1314000:intron | 45.0% | |
| AGAGAAATGAAGGTGAGGCT+TGG | - | chr8_4:12342697-12342716 | Msa1314000:intron | 45.0% | |
| AGCCATTAGAGGCTTTCAAG+AGG | - | chr8_4:12342733-12342752 | Msa1314000:intron | 45.0% | |
| ! | AGGCTTTCAAGAGGTTTGGT+AGG | - | chr8_4:12342742-12342761 | Msa1314000:intron | 45.0% |
| ! | CAAGAGGTTTGGTAGGAAGT+TGG | - | chr8_4:12342749-12342768 | Msa1314000:intron | 45.0% |
| GTCAATCCTTCCTCACTTGA+AGG | + | chr8_4:12342867-12342886 | None:intergenic | 45.0% | |
| !! | GCTTTTAGCTGCACCACTGA+TGG | + | chr8_4:12337904-12337923 | None:intergenic | 50.0% |
| ! | AAGGCTTTTACTAGTGCCGC+CGG | - | chr8_4:12337951-12337970 | Msa1314000:CDS | 50.0% |
| ATCAGTGCTACCGCTTCTGA+TGG | - | chr8_4:12338029-12338048 | Msa1314000:CDS | 50.0% | |
| ! | AATGCCTAGGGAAGCGCAAA+AGG | - | chr8_4:12338179-12338198 | Msa1314000:CDS | 50.0% |
| ! | AACACCTTTTGCGCTTCCCT+AGG | + | chr8_4:12338186-12338205 | None:intergenic | 50.0% |
| CCAACTGAGTTAAGCTCACG+AGG | + | chr8_4:12339086-12339105 | None:intergenic | 50.0% | |
| CCTCGTGAGCTTAACTCAGT+TGG | - | chr8_4:12339083-12339102 | Msa1314000:CDS | 50.0% | |
| ACACCTAATGTGAGACGGAC+TGG | - | chr8_4:12339512-12339531 | Msa1314000:CDS | 50.0% | |
| ! | CACCTAATGTGAGACGGACT+GGG | - | chr8_4:12339513-12339532 | Msa1314000:CDS | 50.0% |
| TACCCAGTCCGTCTCACATT+AGG | + | chr8_4:12339518-12339537 | None:intergenic | 50.0% | |
| AGGAAGCGGAAAAGGGAAAG+TGG | - | chr8_4:12339581-12339600 | Msa1314000:intron | 50.0% | |
| GGAAGCGGAAAAGGGAAAGT+GGG | - | chr8_4:12339582-12339601 | Msa1314000:intron | 50.0% | |
| GCCTGCTCCCAAAATTGGTA+TGG | + | chr8_4:12339640-12339659 | None:intergenic | 50.0% | |
| ACGCATCTTCTTCGCCAACA+AGG | - | chr8_4:12339848-12339867 | Msa1314000:intron | 50.0% | |
| GAGCTGGTGTTTCACTTGGA+AGG | + | chr8_4:12340083-12340102 | None:intergenic | 50.0% | |
| GTCTGCGCAAGGAACATGAT+AGG | - | chr8_4:12340157-12340176 | Msa1314000:CDS | 50.0% | |
| GTGATCCTGACAAGTACGCA+AGG | - | chr8_4:12340211-12340230 | Msa1314000:CDS | 50.0% | |
| TCCTGACAAGTACGCAAGGT+TGG | - | chr8_4:12340215-12340234 | Msa1314000:CDS | 50.0% | |
| GTGTCGGATCCTCCAATAAC+GGG | + | chr8_4:12340246-12340265 | None:intergenic | 50.0% | |
| ! | GGTGTCGGATCCTCCAATAA+CGG | + | chr8_4:12340247-12340266 | None:intergenic | 50.0% |
| TGACCGCACATCATCAAAGC+TGG | + | chr8_4:12340618-12340637 | None:intergenic | 50.0% | |
| !! | GTGCGGTCATTTTATGACGG+TGG | - | chr8_4:12340629-12340648 | Msa1314000:CDS | 50.0% |
| CCTTGAATCACTTTAGGCGG+TGG | + | chr8_4:12340749-12340768 | None:intergenic | 50.0% | |
| CCACCGCCTAAAGTGATTCA+AGG | - | chr8_4:12340746-12340765 | Msa1314000:CDS | 50.0% | |
| AGCTATCAGCCTGAGGATGT+GGG | + | chr8_4:12341449-12341468 | None:intergenic | 50.0% | |
| AAGCTATCAGCCTGAGGATG+TGG | + | chr8_4:12341450-12341469 | None:intergenic | 50.0% | |
| CATCCTCAGGCTGATAGCTT+TGG | - | chr8_4:12341450-12341469 | Msa1314000:intron | 50.0% | |
| TGACCAAAGCTATCAGCCTG+AGG | + | chr8_4:12341456-12341475 | None:intergenic | 50.0% | |
| GCTTCAACACCTTCCTTTGC+AGG | + | chr8_4:12341498-12341517 | None:intergenic | 50.0% | |
| TTCACCAACTTGTCAGCCAC+TGG | - | chr8_4:12341568-12341587 | Msa1314000:intron | 50.0% | |
| TGTACCAGTGGCTGACAAGT+TGG | + | chr8_4:12341575-12341594 | None:intergenic | 50.0% | |
| !! | TGCACTTGCAAGGAGTGTCT+TGG | - | chr8_4:12341797-12341816 | Msa1314000:intron | 50.0% |
| AGTCCTCTATCAGAAGGCGA+AGG | + | chr8_4:12342203-12342222 | None:intergenic | 50.0% | |
| GACTACCCTTATGCTGCTGA+TGG | - | chr8_4:12342219-12342238 | Msa1314000:intron | 50.0% | |
| CGAGTCCATCAGCAGCATAA+GGG | + | chr8_4:12342227-12342246 | None:intergenic | 50.0% | |
| TCGAGTCCATCAGCAGCATA+AGG | + | chr8_4:12342228-12342247 | None:intergenic | 50.0% | |
| !! | CTGCTGATGGACTCGAGATA+TGG | - | chr8_4:12342232-12342251 | Msa1314000:intron | 50.0% |
| GAAGTTGTAGAGGTGGGTCA+TGG | - | chr8_4:12342351-12342370 | Msa1314000:intron | 50.0% | |
| GTCTTCGGCTCTTAGTTGGT+CGG | + | chr8_4:12342521-12342540 | None:intergenic | 50.0% | |
| !! | GAGGAAGGATTGACTTGCAG+AGG | - | chr8_4:12342873-12342892 | Msa1314000:CDS | 50.0% |
| ! | CCACTGTGCCCTTCACCTTT+TGG | + | chr8_4:12337848-12337867 | None:intergenic | 55.0% |
| ! | CCAAAAGGTGAAGGGCACAG+TGG | - | chr8_4:12337845-12337864 | Msa1314000:three_prime_UTR | 55.0% |
| ! | GGTGTCAATTATAGCGCCGG+CGG | + | chr8_4:12337970-12337989 | None:intergenic | 55.0% |
| ! | GGCGGTGTCAATTATAGCGC+CGG | + | chr8_4:12337973-12337992 | None:intergenic | 55.0% |
| GGCGCTATAATTGACACCGC+CGG | - | chr8_4:12337972-12337991 | Msa1314000:CDS | 55.0% | |
| GCGCTATAATTGACACCGCC+GGG | - | chr8_4:12337973-12337992 | Msa1314000:CDS | 55.0% | |
| CGCTATAATTGACACCGCCG+GGG | - | chr8_4:12337974-12337993 | Msa1314000:CDS | 55.0% | |
| !! | GGGAAGCGCAAAAGGTGTTC+TGG | - | chr8_4:12338187-12338206 | Msa1314000:CDS | 55.0% |
| ! | AAGGTCTGGGGTTCAAACCC+CGG | - | chr8_4:12339129-12339148 | Msa1314000:CDS | 55.0% |
| !! | GACTGGCCTGCTCCCAAAAT+TGG | + | chr8_4:12339645-12339664 | None:intergenic | 55.0% |
| GCCAACCTTGCGTACTTGTC+AGG | + | chr8_4:12340219-12340238 | None:intergenic | 55.0% | |
| !! | AGGTTGGCTCGTCCCGTTAT+TGG | - | chr8_4:12340231-12340250 | Msa1314000:CDS | 55.0% |
| ! | TTGGCTCGTCCCGTTATTGG+AGG | - | chr8_4:12340234-12340253 | Msa1314000:CDS | 55.0% |
| TCGAGGGTAAGGCAAGGTGT+CGG | + | chr8_4:12340262-12340281 | None:intergenic | 55.0% | |
| ACACCTTGCCTTACCCTCGA+AGG | - | chr8_4:12340262-12340281 | Msa1314000:CDS | 55.0% | |
| CACCTTGCCTTACCCTCGAA+GGG | - | chr8_4:12340263-12340282 | Msa1314000:CDS | 55.0% | |
| ACCTTGCCTTACCCTCGAAG+GGG | - | chr8_4:12340264-12340283 | Msa1314000:CDS | 55.0% | |
| !! | TCGTCCCGGCTCTCACTTTT+AGG | + | chr8_4:12340452-12340471 | None:intergenic | 55.0% |
| ! | GGGCCGATTCACCATCAGTT+CGG | + | chr8_4:12340718-12340737 | None:intergenic | 55.0% |
| GCTAAGTAGCCCACATCCTC+AGG | - | chr8_4:12341437-12341456 | Msa1314000:intron | 55.0% | |
| GAGGATCCAACTTCCCCACA+CGG | - | chr8_4:12342177-12342196 | Msa1314000:intron | 55.0% | |
| GCATATTCGCAGGCCCGTAT+CGG | + | chr8_4:12342827-12342846 | None:intergenic | 55.0% | |
| ACCCACGTTGGAGGAGTAGC+TGG | - | chr8_4:12338126-12338145 | Msa1314000:CDS | 60.0% | |
| GCCAGCTACTCCTCCAACGT+GGG | + | chr8_4:12338130-12338149 | None:intergenic | 60.0% | |
| AGCCAGCTACTCCTCCAACG+TGG | + | chr8_4:12338131-12338150 | None:intergenic | 60.0% | |
| AGATGGAACGGGTCTGCGCA+AGG | - | chr8_4:12340146-12340165 | Msa1314000:CDS | 60.0% | |
| CCTTGCCTTACCCTCGAAGG+GGG | - | chr8_4:12340265-12340284 | Msa1314000:CDS | 60.0% | |
| GTTCTCCCCCTTCGAGGGTA+AGG | + | chr8_4:12340273-12340292 | None:intergenic | 60.0% | |
| TACCCTCGAAGGGGGAGAAC+TGG | - | chr8_4:12340273-12340292 | Msa1314000:CDS | 60.0% | |
| TGCCAGTTCTCCCCCTTCGA+GGG | + | chr8_4:12340278-12340297 | None:intergenic | 60.0% | |
| TCAGAAGGCGAAGGCCGTGT+GGG | + | chr8_4:12342194-12342213 | None:intergenic | 60.0% | |
| ATCAGAAGGCGAAGGCCGTG+TGG | + | chr8_4:12342195-12342214 | None:intergenic | 60.0% | |
| CGGCCTTCGCCTTCTGATAG+AGG | - | chr8_4:12342197-12342216 | Msa1314000:intron | 60.0% | |
| !! | AGCCACAGAAGCGCCGATGG+AGG | + | chr8_4:12338000-12338019 | None:intergenic | 65.0% |
| !! | GAGAGCCACAGAAGCGCCGA+TGG | + | chr8_4:12338003-12338022 | None:intergenic | 65.0% |
| TCGGCGCTTCTGTGGCTCTC+AGG | - | chr8_4:12338003-12338022 | Msa1314000:CDS | 65.0% | |
| CCCCCTTCGAGGGTAAGGCA+AGG | + | chr8_4:12340268-12340287 | None:intergenic | 65.0% | |
| CTGCCAGTTCTCCCCCTTCG+AGG | + | chr8_4:12340279-12340298 | None:intergenic | 65.0% | |
| CTCGAAGGGGGAGAACTGGC+AGG | - | chr8_4:12340277-12340296 | Msa1314000:CDS | 65.0% | |
| CGAAGGCCGTGTGGGGAAGT+TGG | + | chr8_4:12342186-12342205 | None:intergenic | 65.0% | |
| CAGAAGGCGAAGGCCGTGTG+GGG | + | chr8_4:12342193-12342212 | None:intergenic | 65.0% | |
| !! | AGAAGCGCCGATGGAGGCCC+CGG | + | chr8_4:12337994-12338013 | None:intergenic | 70.0% |
| GGCCTCCATCGGCGCTTCTG+TGG | - | chr8_4:12337995-12338014 | Msa1314000:CDS | 70.0% | |
| GACACCGCCGGGGCCTCCAT+CGG | - | chr8_4:12337984-12338003 | Msa1314000:CDS | 75.0% | |
| !!! | AGCGCCGATGGAGGCCCCGG+CGG | + | chr8_4:12337991-12338010 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 12337768 | 12343081 | 12337768 | ID=Msa1314000;Name=Msa1314000 |
| chr8_4 | mRNA | 12337768 | 12343081 | 12337768 | ID=Msa1314000-mRNA-1;Parent=Msa1314000;Name=Msa1314000-mRNA-1;_AED=0.29;_eAED=0.29;_QI=42|1|1|1|1|1|9|161|869 |
| chr8_4 | exon | 12337768 | 12338685 | 12337768 | ID=Msa1314000-mRNA-1:exon:4615;Parent=Msa1314000-mRNA-1 |
| chr8_4 | exon | 12338906 | 12339169 | 12338906 | ID=Msa1314000-mRNA-1:exon:4614;Parent=Msa1314000-mRNA-1 |
| chr8_4 | exon | 12339260 | 12339567 | 12339260 | ID=Msa1314000-mRNA-1:exon:4613;Parent=Msa1314000-mRNA-1 |
| chr8_4 | exon | 12339680 | 12339784 | 12339680 | ID=Msa1314000-mRNA-1:exon:4612;Parent=Msa1314000-mRNA-1 |
| chr8_4 | exon | 12339900 | 12339985 | 12339900 | ID=Msa1314000-mRNA-1:exon:4611;Parent=Msa1314000-mRNA-1 |
| chr8_4 | exon | 12340082 | 12340402 | 12340082 | ID=Msa1314000-mRNA-1:exon:4610;Parent=Msa1314000-mRNA-1 |
| chr8_4 | exon | 12340534 | 12340774 | 12340534 | ID=Msa1314000-mRNA-1:exon:4609;Parent=Msa1314000-mRNA-1 |
| chr8_4 | exon | 12340980 | 12341266 | 12340980 | ID=Msa1314000-mRNA-1:exon:4608;Parent=Msa1314000-mRNA-1 |
| chr8_4 | exon | 12342799 | 12343081 | 12342799 | ID=Msa1314000-mRNA-1:exon:4607;Parent=Msa1314000-mRNA-1 |
| chr8_4 | five_prime_UTR | 12343040 | 12343081 | 12343040 | ID=Msa1314000-mRNA-1:five_prime_utr;Parent=Msa1314000-mRNA-1 |
| chr8_4 | CDS | 12342799 | 12343039 | 12342799 | ID=Msa1314000-mRNA-1:cds;Parent=Msa1314000-mRNA-1 |
| chr8_4 | CDS | 12340980 | 12341266 | 12340980 | ID=Msa1314000-mRNA-1:cds;Parent=Msa1314000-mRNA-1 |
| chr8_4 | CDS | 12340534 | 12340774 | 12340534 | ID=Msa1314000-mRNA-1:cds;Parent=Msa1314000-mRNA-1 |
| chr8_4 | CDS | 12340082 | 12340402 | 12340082 | ID=Msa1314000-mRNA-1:cds;Parent=Msa1314000-mRNA-1 |
| chr8_4 | CDS | 12339900 | 12339985 | 12339900 | ID=Msa1314000-mRNA-1:cds;Parent=Msa1314000-mRNA-1 |
| chr8_4 | CDS | 12339680 | 12339784 | 12339680 | ID=Msa1314000-mRNA-1:cds;Parent=Msa1314000-mRNA-1 |
| chr8_4 | CDS | 12339260 | 12339567 | 12339260 | ID=Msa1314000-mRNA-1:cds;Parent=Msa1314000-mRNA-1 |
| chr8_4 | CDS | 12338906 | 12339169 | 12338906 | ID=Msa1314000-mRNA-1:cds;Parent=Msa1314000-mRNA-1 |
| chr8_4 | CDS | 12337929 | 12338685 | 12337929 | ID=Msa1314000-mRNA-1:cds;Parent=Msa1314000-mRNA-1 |
| chr8_4 | three_prime_UTR | 12337768 | 12337928 | 12337768 | ID=Msa1314000-mRNA-1:three_prime_utr;Parent=Msa1314000-mRNA-1 |
| Gene Sequence |
| Protein sequence |
