AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1316990

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1316990 MtrunA17_Chr8g0347121 94.368 728 30 1 1 717 1 728 0.0 1392
Msa1316990 MtrunA17_Chr7g0275581 61.346 758 212 9 1 717 1 718 0.0 901
Msa1316990 MtrunA17_Chr3g0126541 56.614 756 246 12 1 717 1 713 0.0 815
Msa1316990 MtrunA17_Chr1g0158861 55.851 752 248 13 2 712 3 711 0.0 793
Msa1316990 MtrunA17_Chr4g0073941 47.917 672 296 9 55 712 94 725 0.0 628
Msa1316990 MtrunA17_Chr2g0326871 46.765 680 303 9 48 712 65 700 0.0 607
Msa1316990 MtrunA17_Chr2g0305771 46.243 692 299 12 57 717 40 689 0.0 603
Msa1316990 MtrunA17_Chr4g0001481 45.467 728 319 13 15 712 57 736 0.0 593
Msa1316990 MtrunA17_Chr4g0028861 46.305 663 292 11 1 644 66 683 0.0 590
Msa1316990 MtrunA17_Chr3g0139071 43.913 690 307 10 60 712 73 719 0.0 573
Msa1316990 MtrunA17_Chr7g0228181 43.300 709 327 13 33 712 15 677 0.0 573
Msa1316990 MtrunA17_Chr3g0125651 43.875 702 298 14 60 714 36 688 0.0 565
Msa1316990 MtrunA17_Chr1g0181121 43.038 711 330 14 34 712 11 678 0.0 563
Msa1316990 MtrunA17_Chr6g0481021 36.116 623 325 16 59 653 122 699 1.98e-114 360
Msa1316990 MtrunA17_Chr6g0480671 35.304 609 323 12 60 643 193 755 1.36e-108 347
Msa1316990 MtrunA17_Chr6g0480851 32.288 638 346 15 59 668 183 762 1.70e-104 336
Msa1316990 MtrunA17_Chr8g0360821 33.333 618 327 16 59 642 61 627 2.35e-102 328
Msa1316990 MtrunA17_Chr6g0480781 32.692 624 366 18 59 646 168 773 1.68e-94 310
Msa1316990 MtrunA17_Chr7g0218341 31.746 630 354 14 44 642 91 675 5.82e-89 293
Msa1316990 MtrunA17_Chr6g0480741 31.964 560 325 12 60 587 115 650 1.37e-84 281
Msa1316990 MtrunA17_Chr6g0480681 28.000 725 384 20 38 688 80 740 1.25e-73 253
Msa1316990 MtrunA17_Chr2g0318561 32.520 492 264 14 176 642 2 450 2.44e-70 238
Msa1316990 MtrunA17_Chr5g0395421 34.713 314 167 7 312 602 65 363 1.21e-46 170
Msa1316990 MtrunA17_Chr2g0326861 42.786 201 95 4 135 326 14 203 2.06e-41 150
Msa1316990 MtrunA17_Chr5g0395411 36.111 216 120 4 59 270 171 372 2.37e-39 149
Msa1316990 MtrunA17_Chr6g0480771 29.242 277 143 7 377 641 18 253 2.27e-25 107
Msa1316990 MtrunA17_Chr6g0480841 37.143 175 91 4 425 587 2 169 4.80e-25 103
Msa1316990 MtrunA17_Chr6g0480751 36.220 127 76 1 56 177 89 215 2.46e-22 96.7
Msa1316990 MtrunA17_Chr6g0480791 35.878 131 81 2 55 182 165 295 3.63e-22 97.4
Msa1316990 MtrunA17_Chr2g0326851 34.161 161 67 4 554 712 7 130 1.68e-17 79.7
Msa1316990 MtrunA17_Chr4g0063141 20.513 429 254 10 113 528 87 441 2.09e-16 83.6
Msa1316990 MtrunA17_Chr2g0318551 29.114 158 98 3 31 179 26 178 3.28e-15 75.5
Msa1316990 MtrunA17_Chr2g0277651 23.492 315 192 10 242 528 169 462 2.10e-11 67.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1316990 AT4G01010.1 57.201 736 230 11 9 712 9 691 0.0 815
Msa1316990 AT4G01010.2 57.201 736 230 11 9 712 9 691 0.0 815
Msa1316990 AT5G53130.1 56.724 751 247 12 1 712 1 712 0.0 802
Msa1316990 AT1G01340.2 57.797 699 240 8 32 712 42 703 0.0 800
Msa1316990 AT1G01340.1 57.797 699 240 8 32 712 37 698 0.0 800
Msa1316990 AT2G46430.1 51.781 730 275 12 23 712 9 701 0.0 717
Msa1316990 AT2G46430.2 51.781 730 275 12 23 712 9 701 0.0 717
Msa1316990 AT2G23980.6 48.645 701 297 11 41 717 59 720 0.0 666
Msa1316990 AT2G23980.9 48.645 701 297 11 41 717 86 747 0.0 666
Msa1316990 AT2G23980.10 48.645 701 297 11 41 717 86 747 0.0 666
Msa1316990 AT2G23980.1 48.645 701 297 11 41 717 86 747 0.0 666
Msa1316990 AT2G23980.4 48.645 701 297 11 41 717 86 747 0.0 666
Msa1316990 AT2G23980.5 48.645 701 297 11 41 717 86 747 0.0 666
Msa1316990 AT4G30560.1 50.000 672 270 11 60 712 103 727 0.0 662
Msa1316990 AT4G30560.4 50.000 672 270 11 60 712 103 727 0.0 662
Msa1316990 AT4G30560.5 50.149 672 269 11 60 712 77 701 0.0 661
Msa1316990 AT4G30560.2 50.149 672 269 11 60 712 77 701 0.0 661
Msa1316990 AT4G30560.3 50.149 672 269 11 60 712 77 701 0.0 661
Msa1316990 AT2G23980.3 47.238 724 296 12 41 717 86 770 0.0 654
Msa1316990 AT2G23980.2 47.238 724 296 12 41 717 86 770 0.0 654
Msa1316990 AT2G23980.8 47.238 724 296 12 41 717 86 770 0.0 654
Msa1316990 AT2G23980.7 47.238 724 296 12 41 717 86 770 0.0 654
Msa1316990 AT5G57940.1 46.429 756 319 13 1 712 1 714 0.0 642
Msa1316990 AT5G57940.2 46.429 756 319 13 1 712 1 714 0.0 642
Msa1316990 AT5G57940.3 49.403 670 279 10 60 712 81 707 0.0 641
Msa1316990 AT1G19780.1 47.902 691 279 10 60 712 97 744 0.0 633
Msa1316990 AT1G15990.1 44.832 774 320 15 1 712 7 735 0.0 631
Msa1316990 AT2G28260.1 47.153 685 281 13 48 715 58 678 0.0 592
Msa1316990 AT2G28260.2 47.153 685 281 13 48 715 18 638 0.0 592
Msa1316990 AT2G24610.1 43.929 733 304 14 39 712 38 722 0.0 590
Msa1316990 AT2G24610.2 43.929 733 304 14 39 712 53 737 0.0 589
Msa1316990 AT4G30360.1 44.220 692 311 14 59 717 70 719 0.0 564
Msa1316990 AT5G14870.1 42.248 703 327 11 57 716 37 703 0.0 560
Msa1316990 AT3G48010.1 42.330 704 318 14 57 712 41 704 0.0 556
Msa1316990 AT2G46440.1 47.352 623 274 10 68 675 37 620 0.0 531
Msa1316990 AT2G46450.4 43.116 661 307 11 68 712 37 644 3.49e-175 516
Msa1316990 AT2G46450.1 43.116 661 307 11 68 712 37 644 3.49e-175 516
Msa1316990 AT1G19780.2 47.183 568 233 9 176 712 2 533 1.87e-164 484
Msa1316990 AT2G46450.3 41.452 661 295 12 68 712 24 608 1.00e-162 483
Msa1316990 AT2G46450.2 41.452 661 295 12 68 712 37 621 1.58e-162 483
Msa1316990 AT2G46440.2 48.852 479 194 9 213 676 1 443 7.72e-136 407
Msa1316990 AT3G17700.1 33.167 600 334 11 59 636 191 745 7.89e-102 329
Msa1316990 AT3G17690.1 32.792 616 341 14 57 647 153 720 2.71e-101 327
Msa1316990 AT3G17700.2 34.898 490 293 7 59 536 191 666 1.43e-95 311
Msa1316990 AT3G17690.2 34.274 496 293 9 57 535 153 632 5.73e-93 303
Msa1316990 AT5G15410.1 32.558 602 344 11 60 636 113 677 1.87e-92 303
Msa1316990 AT5G15410.2 32.558 602 344 11 60 636 112 676 2.55e-92 303
Msa1316990 AT5G54250.2 31.475 610 351 13 60 642 79 648 5.67e-91 299
Msa1316990 AT5G54250.1 31.475 610 351 13 60 642 79 648 5.67e-91 299
Msa1316990 AT5G54250.4 31.475 610 351 13 60 642 79 648 5.67e-91 299
Msa1316990 AT5G54250.3 30.984 610 349 14 60 642 79 643 1.96e-86 286
Msa1316990 AT3G17690.3 30.831 373 232 7 57 412 153 516 1.64e-56 201

Find 137 sgRNAs with CRISPR-Local

Find 277 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GATTTCCAAACTGTTGTATT+TGG 0.153072 8_4:-17966765 Msa1316990:three_prime_UTR
TGTTAATAAGACGTCGAAAT+TGG 0.155059 8_4:+17967826 None:intergenic
AACCAATCCTTTGTTATATA+TGG 0.163608 8_4:+17969832 None:intergenic
ATGTCTCTTCTCAGATCTTT+AGG 0.165544 8_4:+17968316 None:intergenic
AATGATCCTGATGATATTAT+TGG 0.170519 8_4:-17969392 Msa1316990:CDS
TTGTTAAGAAAGAGTGTTTA+TGG 0.195691 8_4:+17971931 None:intergenic
GCAATCTTCATTGCTGTCTT+TGG 0.196828 8_4:-17968850 Msa1316990:CDS
GGTGGGGTTTGCGCAATTTA+AGG 0.199611 8_4:-17969271 Msa1316990:intron
TCAATGTTCCATTCAAATTA+AGG 0.206765 8_4:+17970439 None:intergenic
CAACATGGATAAACAGTTAT+TGG 0.209808 8_4:-17968162 Msa1316990:CDS
CTTCGATAGATAATAGAATT+TGG 0.216948 8_4:+17966738 None:intergenic
ATAAATTCTTCTACTGCTTT+TGG 0.244483 8_4:-17969292 Msa1316990:CDS
CATTTGTAGTCATGATTTAT+AGG 0.252028 8_4:+17971330 None:intergenic
AAGACCTCCAACACACTTTC+AGG 0.252666 8_4:-17967800 Msa1316990:CDS
ATTAGGTTGTTGGAGCATTT+TGG 0.256130 8_4:-17969559 Msa1316990:intron
TGTCTCTTCTCAGATCTTTA+GGG 0.276896 8_4:+17968317 None:intergenic
CTGAAAACAAGCACTTATAT+TGG 0.281584 8_4:-17968886 Msa1316990:CDS
TCAAATTAAGGCATTTGTTC+TGG 0.300474 8_4:+17970451 None:intergenic
CAATATGATTCTTCAATTGA+TGG 0.309646 8_4:-17970669 Msa1316990:CDS
TGAAAACAAGCACTTATATT+GGG 0.322349 8_4:-17968885 Msa1316990:CDS
AATTCTTCTTCATTCTGCTT+TGG 0.327794 8_4:-17971870 Msa1316990:five_prime_UTR
TTCTGTCCAGATTTGAAGAT+TGG 0.337475 8_4:-17970722 Msa1316990:intron
GAAATCCAAATACAACAGTT+TGG 0.337638 8_4:+17966760 None:intergenic
ACGAAATGATGCATTATCTA+AGG 0.337947 8_4:+17967755 None:intergenic
CGCGGTTCATACAAGTAATA+TGG 0.339598 8_4:-17967363 Msa1316990:CDS
GGAACTGAGCCTTGTGGAAT+TGG 0.348268 8_4:+17969853 None:intergenic
TCAACTGTACTAGTCGAAAT+AGG 0.351889 8_4:+17967909 None:intergenic
CTTCATTGCTGTCTTTGGAT+TGG 0.352622 8_4:-17968845 Msa1316990:intron
TGCTTTACATTACTACTAGA+AGG 0.363681 8_4:-17966829 Msa1316990:three_prime_UTR
ACAGGGATGTAAAAGAATAA+TGG 0.368359 8_4:+17970483 None:intergenic
AAGTAATATGGCGTCGATAC+AGG 0.377837 8_4:-17967351 Msa1316990:CDS
CATTCTGCTTTGGTTCCTAT+AGG 0.377841 8_4:-17971860 Msa1316990:five_prime_UTR
AACAAATGCCTTAATTTGAA+TGG 0.382641 8_4:-17970447 Msa1316990:CDS
GTGATGAAATCTGGCTCATC+TGG 0.387811 8_4:+17967130 None:intergenic
GTGTGTGATGGCAGTATCTA+TGG 0.389152 8_4:-17970508 Msa1316990:CDS
GGTAAGTTTGAAGAGGTTGT+AGG 0.390125 8_4:+17967930 None:intergenic
ATCATCTTTCAGTTTCGAAC+CGG 0.390270 8_4:-17970363 Msa1316990:CDS
GTTAATAAGACGTCGAAATT+GGG 0.397762 8_4:+17967827 None:intergenic
ATCAATTCTTCCACTTCCTC+AGG 0.406342 8_4:-17970235 Msa1316990:intron
TACTTGTGATATTAGGTTGT+TGG 0.414687 8_4:-17969569 Msa1316990:intron
TCTCAAGTGCTTTAATGCAT+TGG 0.421438 8_4:+17967207 None:intergenic
AAGGTCCACTACTTCAGAAA+TGG 0.424933 8_4:-17970551 Msa1316990:CDS
ACAACAAATGGTGGAAGAAC+TGG 0.427072 8_4:-17968023 Msa1316990:CDS
GGAGCTTCTAACATGGGCCT+TGG 0.434189 8_4:-17967955 Msa1316990:CDS
ATTCCAAAATTGAAAACTGT+TGG 0.436075 8_4:+17969368 None:intergenic
CTTAAGACCGCCACAACAAA+TGG 0.436296 8_4:-17968035 Msa1316990:CDS
GAAGTGGAAGAATTGATAGA+AGG 0.438544 8_4:+17970241 None:intergenic
TTCCAAAATTGAAAACTGTT+GGG 0.439910 8_4:+17969369 None:intergenic
TATCTATCGAAGTTGTTACT+AGG 0.441946 8_4:-17966727 None:intergenic
GTTGTTACTTGCAGTTCTGT+TGG 0.447707 8_4:-17968916 Msa1316990:intron
AATGAAGTAACAAGCACTTC+TGG 0.448752 8_4:-17969751 Msa1316990:CDS
TATCTCATTGCTATAGCAAA+AGG 0.451371 8_4:+17970288 None:intergenic
TGCTTTGGTTCCTATAGGTA+AGG 0.464653 8_4:-17971855 Msa1316990:five_prime_UTR
TCAGAAATTGTTACGTGAAA+CGG 0.470319 8_4:-17967317 Msa1316990:CDS
GACGGTATGAACAATACAAA+TGG 0.472315 8_4:-17968384 Msa1316990:CDS
GTATAGATTCGCATGAGTCT+TGG 0.472590 8_4:+17969781 None:intergenic
TTGAAGAGATGAGAATCAAA+AGG 0.475729 8_4:-17968468 Msa1316990:CDS
TAGTACAGTTGAAACTATTA+CGG 0.479709 8_4:-17967898 Msa1316990:CDS
ATTCTTTGCTTCAAGTGATC+CGG 0.484052 8_4:+17968409 None:intergenic
TTGTTACTTGCAGTTCTGTT+GGG 0.485082 8_4:-17968915 Msa1316990:intron
ATTCCTTGCAATGGAGGACA+TGG 0.488633 8_4:-17967390 Msa1316990:CDS
ATGAAGAGCATTTCGTCCAC+TGG 0.491546 8_4:+17968071 None:intergenic
TTGTTCCATTTCTGAAGTAG+TGG 0.494112 8_4:+17970546 None:intergenic
ACAAAATGCTTCTGAAAATG+AGG 0.502854 8_4:-17967284 Msa1316990:CDS
CTTTAACTCGTCCGAACTCA+AGG 0.503530 8_4:-17967997 Msa1316990:CDS
TTGTTCTGGTCATCAATCAC+AGG 0.505365 8_4:+17970465 None:intergenic
GAATCGTCCGCAGCTCAGAT+AGG 0.505421 8_4:+17969463 None:intergenic
TTCCATATATAACAAAGGAT+TGG 0.506157 8_4:-17969834 Msa1316990:CDS
GTTGGGCCAATAATATCATC+AGG 0.511144 8_4:+17969386 None:intergenic
AAAATCACCAGCCTTGAGTT+CGG 0.513510 8_4:+17967986 None:intergenic
ATAGCAAAAGGATCATCAAC+CGG 0.516589 8_4:+17970300 None:intergenic
CGAAATAGGTAAGTTTGAAG+AGG 0.517146 8_4:+17967923 None:intergenic
TATTCTGATACCTGAGGAAG+TGG 0.517630 8_4:+17970225 None:intergenic
TCATCTTTCAGTTTCGAACC+GGG 0.520457 8_4:-17970362 Msa1316990:CDS
TAGAATCAGAGTTGCGGTGT+TGG 0.522839 8_4:-17969523 Msa1316990:CDS
TTAACTGAGACAGCATGGGC+TGG 0.523523 8_4:-17969724 Msa1316990:CDS
CTTGCCTGAAAGTGTGTTGG+AGG 0.524951 8_4:+17967796 None:intergenic
ATATCATCAGGATCATTGTA+AGG 0.531313 8_4:+17969398 None:intergenic
AAAAGTTTCGTTGTTTGTGA+AGG 0.533061 8_4:-17968098 Msa1316990:CDS
AGTAATATGGCGTCGATACA+GGG 0.535014 8_4:-17967350 Msa1316990:CDS
AACTCGTCCGAACTCAAGGC+TGG 0.535404 8_4:-17967993 Msa1316990:CDS
CTCTTCTCAGATCTTTAGGG+AGG 0.541922 8_4:+17968320 None:intergenic
TTCTGAAGTAGTGGACCTTG+TGG 0.543372 8_4:+17970555 None:intergenic
CTCTCATGCATGATGACTTG+AGG 0.543393 8_4:-17967860 Msa1316990:CDS
GTAAGAATGTCTAGTGATTG+TGG 0.545657 8_4:-17966854 Msa1316990:three_prime_UTR
TCTGGTTTCTGAGGCAAAAG+TGG 0.546224 8_4:+17967148 None:intergenic
AGATAGGAATCATCAAAGAA+TGG 0.547757 8_4:+17969479 None:intergenic
AAGAGATGAGAATCAAAAGG+AGG 0.548051 8_4:-17968465 Msa1316990:CDS
AGTTCTTCCACCATTTGTTG+TGG 0.548081 8_4:+17968025 None:intergenic
GATGTGCCACCGTATGCTAC+CGG 0.552256 8_4:-17968428 Msa1316990:CDS
GAGTCTTCTTCACCAAGCAT+TGG 0.553818 8_4:-17967259 Msa1316990:CDS
GCATTAAAGCACTTGAGAAG+TGG 0.554111 8_4:-17967202 Msa1316990:CDS
CTCCAACACACTTTCAGGCA+AGG 0.557764 8_4:-17967795 Msa1316990:CDS
TCCTTGCAATGGAGGACATG+GGG 0.558163 8_4:-17967388 Msa1316990:CDS
AGAACACTGCACCTAGAAGC+TGG 0.559017 8_4:+17970582 None:intergenic
AGAGATGAGAATCAAAAGGA+GGG 0.561003 8_4:-17968464 Msa1316990:CDS
TGAAGAGGTTGTAGGATCCA+AGG 0.563224 8_4:+17967938 None:intergenic
TGCTCTAACCTCTCGTGTGG+TGG 0.568625 8_4:-17969336 Msa1316990:CDS
TCAAGTGATCCGGTAGCATA+CGG 0.569335 8_4:+17968419 None:intergenic
TTCCTTGCAATGGAGGACAT+GGG 0.577231 8_4:-17967389 Msa1316990:CDS
TCCCCATGTCCTCCATTGCA+AGG 0.577850 8_4:+17967387 None:intergenic
TATACAGTGGAACCAATGCT+TGG 0.578069 8_4:+17967247 None:intergenic
GTGGAGAGGAGCTTCTAACA+TGG 0.578654 8_4:-17967962 Msa1316990:CDS
TCTGGCTCATCTGGTTTCTG+AGG 0.580159 8_4:+17967139 None:intergenic
GTTCCACTGTATATGTACAA+AGG 0.580611 8_4:-17967237 Msa1316990:CDS
ATAAACACTCTTTCTTAACA+AGG 0.586255 8_4:-17971929 Msa1316990:five_prime_UTR
TCTTCCACCATTTGTTGTGG+CGG 0.589608 8_4:+17968028 None:intergenic
CTCAGTTCCATATATAACAA+AGG 0.591567 8_4:-17969839 Msa1316990:CDS
TTTAACTATAGTAATTGTGT+AGG 0.596412 8_4:-17966957 Msa1316990:three_prime_UTR
AAAGGAGGGATGCAGAACAA+TGG 0.601963 8_4:-17968450 Msa1316990:CDS
GTATATTAACTGAGACAGCA+TGG 0.602058 8_4:-17969729 Msa1316990:CDS
CGAAGAAGGTGCAATAAACC+CGG 0.603746 8_4:+17970344 None:intergenic
AGCCTTGCCTGAAAGTGTGT+TGG 0.604868 8_4:+17967793 None:intergenic
TGGAGAGGAGCTTCTAACAT+GGG 0.608318 8_4:-17967961 Msa1316990:CDS
GAAAACAAGCACTTATATTG+GGG 0.608622 8_4:-17968884 Msa1316990:CDS
GATGATTCCTATCTGAGCTG+CGG 0.614958 8_4:-17969470 Msa1316990:CDS
TATATTAACTGAGACAGCAT+GGG 0.622764 8_4:-17969728 Msa1316990:CDS
TGTTCTGGTCATCAATCACA+GGG 0.627878 8_4:+17970466 None:intergenic
AATGGAGGACATGGGGAGCG+CGG 0.630933 8_4:-17967381 Msa1316990:CDS
CAAATGAAAAGAAATTTGTG+AGG 0.631583 8_4:-17971313 Msa1316990:intron
CTTTGTTATAACGTGTGTGA+TGG 0.634441 8_4:-17970520 Msa1316990:CDS
TTTCGATAGAATCAGAGTTG+CGG 0.645163 8_4:-17969529 Msa1316990:CDS
AATGTGTGATAAACTGAAGC+CGG 0.650306 8_4:-17968135 Msa1316990:CDS
AATTTACATTATAAGAAACA+AGG 0.651404 8_4:-17967720 Msa1316990:CDS
ACTTGAAGCAAAGAATTCGA+CGG 0.656032 8_4:-17968402 Msa1316990:CDS
AAGACCGCCACAACAAATGG+TGG 0.660390 8_4:-17968032 Msa1316990:CDS
TGCAGTGTTCTTGATCCACA+AGG 0.664587 8_4:-17970570 Msa1316990:CDS
ATTCAACTCCACCACACGAG+AGG 0.664662 8_4:+17969328 None:intergenic
GCAATGATTCCAATTCCACA+AGG 0.673079 8_4:-17969862 Msa1316990:CDS
TGATGCTCTAACCTCTCGTG+TGG 0.679720 8_4:-17969339 Msa1316990:CDS
TGTTTGTGAAGGTGATCCAG+TGG 0.682601 8_4:-17968087 Msa1316990:CDS
AGGCACAAATAACTTGCTAG+TGG 0.686994 8_4:-17966937 Msa1316990:three_prime_UTR
TACAAATGGCAAGAAAATCG+AGG 0.692084 8_4:-17968370 Msa1316990:CDS
GAAATGCTCTTCATCATGCG+CGG 0.701329 8_4:-17968062 Msa1316990:CDS
AAACCTTTGTACATATACAG+TGG 0.715371 8_4:+17967234 None:intergenic
ATATATGGAACTGAGCCTTG+TGG 0.739194 8_4:+17969847 None:intergenic
AGTGATCCGGTAGCATACGG+TGG 0.739209 8_4:+17968422 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTTTTTTTTTTTTT+TGG + chr8_4:17971618-17971637 None:intergenic 0.0%
!! TTAATTAGTTAAAAATATCT+AGG + chr8_4:17966962-17966981 None:intergenic 10.0%
!! AAAATGATAAAATATATAGT+TGG + chr8_4:17971100-17971119 None:intergenic 10.0%
!! CTAATTAATATTTCTTCTTA+TGG - chr8_4:17966974-17966993 Msa1316990:three_prime_UTR 15.0%
!! TACATAGTAAATAATGAAAT+TGG - chr8_4:17967150-17967169 Msa1316990:CDS 15.0%
!!! AAAATTCTAATTTTTGAAGA+TGG - chr8_4:17967264-17967283 Msa1316990:CDS 15.0%
!! AATTTACATTATAAGAAACA+AGG - chr8_4:17970954-17970973 Msa1316990:intron 15.0%
!!! TTTTTTTTTTTTTTTTGGTG+TGG + chr8_4:17971614-17971633 None:intergenic 15.0%
!! CTGATTAAAAAGAATATGTA+TGG + chr8_4:17967454-17967473 None:intergenic 20.0%
!!! AATGATTCATTATTTTTTGC+TGG + chr8_4:17968065-17968084 None:intergenic 20.0%
!! AGCAAAAAATAATGAATCAT+TGG - chr8_4:17968064-17968083 Msa1316990:CDS 20.0%
!! AGAATATGCTTGAATAAAAA+AGG + chr8_4:17968480-17968499 None:intergenic 20.0%
!!! TTTTATTCAAGCATATTCTA+AGG - chr8_4:17968481-17968500 Msa1316990:CDS 20.0%
!!! TTTTATTACATTGGTAACTT+AGG + chr8_4:17968567-17968586 None:intergenic 20.0%
!! TAAGTTACCAATGTAATAAA+AGG - chr8_4:17968566-17968585 Msa1316990:intron 20.0%
!! TAAGAGCTTATATAAATGTT+TGG + chr8_4:17969611-17969630 None:intergenic 20.0%
!! AAACAATGTGAATAAAGTTA+AGG + chr8_4:17969658-17969677 None:intergenic 20.0%
!! TGTCACAAAATATTAAATAG+TGG + chr8_4:17969692-17969711 None:intergenic 20.0%
!!! TTTTTTCGAAGCTTATTTAT+AGG - chr8_4:17970017-17970036 Msa1316990:intron 20.0%
!!! ATATCTTGTTTACTTAAGTA+AGG + chr8_4:17970075-17970094 None:intergenic 20.0%
!! TTACTTAAGTAAACAAGATA+TGG - chr8_4:17970074-17970093 Msa1316990:intron 20.0%
!!! TTCATACTTTTCTATGTTAT+CGG + chr8_4:17971070-17971089 None:intergenic 20.0%
!!! AGTATTTTTATTCCTATATG+AGG - chr8_4:17971168-17971187 Msa1316990:intron 20.0%
!! AAAATAGAAGAAAGACAATA+TGG - chr8_4:17971223-17971242 Msa1316990:intron 20.0%
!! TTTAACTATAGTAATTGTGT+AGG - chr8_4:17971717-17971736 Msa1316990:intron 20.0%
!!! TTGTTAAGAAAGAGTGTTTA+TGG + chr8_4:17966746-17966765 None:intergenic 25.0%
! ATAAACACTCTTTCTTAACA+AGG - chr8_4:17966745-17966764 Msa1316990:three_prime_UTR 25.0%
! TCACACATAACTAGAAAAAA+AGG + chr8_4:17967239-17967258 None:intergenic 25.0%
! CATTTGTAGTCATGATTTAT+AGG + chr8_4:17967347-17967366 None:intergenic 25.0%
! CAAATGAAAAGAAATTTGTG+AGG - chr8_4:17967361-17967380 Msa1316990:CDS 25.0%
!!! TTTGTTTTGTTCAGGAAAAA+AGG - chr8_4:17967488-17967507 Msa1316990:intron 25.0%
! TAAAATTGCCTATACGAATT+CGG - chr8_4:17967550-17967569 Msa1316990:intron 25.0%
! TCAAAATCTGCACTAAAATA+TGG + chr8_4:17967650-17967669 None:intergenic 25.0%
! ACTACGTAAATTCTTACAAT+CGG - chr8_4:17967745-17967764 Msa1316990:CDS 25.0%
! TTTAGTCACTCATAGTAATA+TGG + chr8_4:17967817-17967836 None:intergenic 25.0%
! CAATATGATTCTTCAATTGA+TGG - chr8_4:17968005-17968024 Msa1316990:CDS 25.0%
!! AACAAATGCCTTAATTTGAA+TGG - chr8_4:17968227-17968246 Msa1316990:intron 25.0%
! TCAATGTTCCATTCAAATTA+AGG + chr8_4:17968238-17968257 None:intergenic 25.0%
!! ATATTCTAAGGAGTTCAATA+AGG - chr8_4:17968493-17968512 Msa1316990:CDS 25.0%
!! AAGTTCACCTTTTATTACAT+TGG + chr8_4:17968576-17968595 None:intergenic 25.0%
! TTCCATATATAACAAAGGAT+TGG - chr8_4:17968840-17968859 Msa1316990:intron 25.0%
!! AACCAATCCTTTGTTATATA+TGG + chr8_4:17968845-17968864 None:intergenic 25.0%
! TCCAAATTACTTGTGATATT+AGG - chr8_4:17969098-17969117 Msa1316990:intron 25.0%
! ACCTAATATCACAAGTAATT+TGG + chr8_4:17969102-17969121 None:intergenic 25.0%
! AATGATCCTGATGATATTAT+TGG - chr8_4:17969282-17969301 Msa1316990:CDS 25.0%
! TTCCAAAATTGAAAACTGTT+GGG + chr8_4:17969308-17969327 None:intergenic 25.0%
! ATTCCAAAATTGAAAACTGT+TGG + chr8_4:17969309-17969328 None:intergenic 25.0%
!! ATAAATTCTTCTACTGCTTT+TGG - chr8_4:17969382-17969401 Msa1316990:CDS 25.0%
!! TATTTTGTGACATCTTATCA+AGG - chr8_4:17969700-17969719 Msa1316990:CDS 25.0%
! TGAAAACAAGCACTTATATT+GGG - chr8_4:17969789-17969808 Msa1316990:CDS 25.0%
! GTTCTATTTGCATTACTTAT+AGG - chr8_4:17969851-17969870 Msa1316990:CDS 25.0%
! AGATAATCGTAGAAATAAGT+CGG - chr8_4:17969910-17969929 Msa1316990:intron 25.0%
! TCTGATGAAGTAAAGATTAT+AGG - chr8_4:17970134-17970153 Msa1316990:intron 25.0%
! TGTAAACAAGTATAGTTAAG+TGG + chr8_4:17970467-17970486 None:intergenic 25.0%
! TAGTACAGTTGAAACTATTA+CGG - chr8_4:17970776-17970795 Msa1316990:intron 25.0%
!! ACAATAGTAATTTTCGAAAC+TGG + chr8_4:17971136-17971155 None:intergenic 25.0%
! CGAAAATTACTATTGTATTG+TGG - chr8_4:17971140-17971159 Msa1316990:intron 25.0%
!!! TTTTTTTGAGTGATGAAATC+TGG + chr8_4:17971556-17971575 None:intergenic 25.0%
!!! ATTGATGGTTTTTGTTGTTT+TGG - chr8_4:17971886-17971905 Msa1316990:five_prime_UTR 25.0%
!!! TTGATGGTTTTTGTTGTTTT+GGG - chr8_4:17971887-17971906 Msa1316990:five_prime_UTR 25.0%
! CTTCGATAGATAATAGAATT+TGG + chr8_4:17971939-17971958 None:intergenic 25.0%
AATTCTTCTTCATTCTGCTT+TGG - chr8_4:17966804-17966823 Msa1316990:three_prime_UTR 30.0%
! TTTTCTGTTACCTTACCTAT+AGG + chr8_4:17966832-17966851 None:intergenic 30.0%
ACATTTATCAAAACCAACCT+TGG - chr8_4:17966865-17966884 Msa1316990:three_prime_UTR 30.0%
GAAATAGTAGAAGGAAAAGA+AGG + chr8_4:17966913-17966932 None:intergenic 30.0%
GATAAGTGTGAAATAGTAGA+AGG + chr8_4:17966922-17966941 None:intergenic 30.0%
!! TTTTTGAAGATGGATTTTGC+AGG - chr8_4:17967274-17967293 Msa1316990:CDS 30.0%
!!! GTGATTCATTTGTTTTGTTC+AGG - chr8_4:17967480-17967499 Msa1316990:intron 30.0%
AACATCTGATCTCTATTCAA+AGG - chr8_4:17967708-17967727 Msa1316990:CDS 30.0%
CATACAGTATATTCACATGT+TGG - chr8_4:17967850-17967869 Msa1316990:CDS 30.0%
ACAGGGATGTAAAAGAATAA+TGG + chr8_4:17968194-17968213 None:intergenic 30.0%
! TCAAATTAAGGCATTTGTTC+TGG + chr8_4:17968226-17968245 None:intergenic 30.0%
TATCTCATTGCTATAGCAAA+AGG + chr8_4:17968389-17968408 None:intergenic 30.0%
! TGTAATGATGTGTTGATAGA+TGG - chr8_4:17968781-17968800 Msa1316990:intron 30.0%
CTCAGTTCCATATATAACAA+AGG - chr8_4:17968835-17968854 Msa1316990:intron 30.0%
TATATTAACTGAGACAGCAT+GGG - chr8_4:17968946-17968965 Msa1316990:intron 30.0%
AAAACTTAGCTCAGTAAACA+AGG + chr8_4:17969067-17969086 None:intergenic 30.0%
! TACTTGTGATATTAGGTTGT+TGG - chr8_4:17969105-17969124 Msa1316990:intron 30.0%
AGATAGGAATCATCAAAGAA+TGG + chr8_4:17969198-17969217 None:intergenic 30.0%
ATATCATCAGGATCATTGTA+AGG + chr8_4:17969279-17969298 None:intergenic 30.0%
GTTTACTCTATAAGAACACA+TGG + chr8_4:17969466-17969485 None:intergenic 30.0%
GAGCTTATATAAATGTTTGG+AGG + chr8_4:17969608-17969627 None:intergenic 30.0%
CTTTATTCACATTGTTTCGA+TGG - chr8_4:17969661-17969680 Msa1316990:intron 30.0%
!! CAATATAAGTGCTTGTTTTC+AGG + chr8_4:17969790-17969809 None:intergenic 30.0%
CTGAAAACAAGCACTTATAT+TGG - chr8_4:17969788-17969807 Msa1316990:CDS 30.0%
GAAAACAAGCACTTATATTG+GGG - chr8_4:17969790-17969809 Msa1316990:CDS 30.0%
ATTACTTATAGGAAACATGC+AGG - chr8_4:17969862-17969881 Msa1316990:CDS 30.0%
TAAGCTTCGAAAAAAAGTCT+TGG + chr8_4:17970012-17970031 None:intergenic 30.0%
! AGGCTAGCAAAAAACATTTT+AGG - chr8_4:17970037-17970056 Msa1316990:intron 30.0%
! TCTTGTTTACTTAAGTAAGG+TGG + chr8_4:17970072-17970091 None:intergenic 30.0%
TTGAAGAGATGAGAATCAAA+AGG - chr8_4:17970206-17970225 Msa1316990:intron 30.0%
TAGTACTTTCATCTTTCACT+TGG - chr8_4:17970429-17970448 Msa1316990:CDS 30.0%
ACTTGTTTACATGTGATGAT+AGG - chr8_4:17970476-17970495 Msa1316990:CDS 30.0%
TTATCCATGTTGCCAAAAAT+TGG + chr8_4:17970504-17970523 None:intergenic 30.0%
CAACATGGATAAACAGTTAT+TGG - chr8_4:17970512-17970531 Msa1316990:CDS 30.0%
! ACAAACAACGAAACTTTTCT+CGG + chr8_4:17970574-17970593 None:intergenic 30.0%
AAAAGTTTCGTTGTTTGTGA+AGG - chr8_4:17970576-17970595 Msa1316990:CDS 30.0%
GTTAATAAGACGTCGAAATT+GGG + chr8_4:17970850-17970869 None:intergenic 30.0%
TGTTAATAAGACGTCGAAAT+TGG + chr8_4:17970851-17970870 None:intergenic 30.0%
ACGAAATGATGCATTATCTA+AGG + chr8_4:17970922-17970941 None:intergenic 30.0%
GTCATCTAAAAATTTCACCT+TGG - chr8_4:17970989-17971008 Msa1316990:intron 30.0%
CTAAAAATTTCACCTTGGAT+TGG - chr8_4:17970994-17971013 Msa1316990:intron 30.0%
! TTCGAAACTGGTTTATATTG+CGG + chr8_4:17971124-17971143 None:intergenic 30.0%
GAGACTATGGTAAAGATATT+AGG - chr8_4:17971197-17971216 Msa1316990:intron 30.0%
TCAGAAATTGTTACGTGAAA+CGG - chr8_4:17971357-17971376 Msa1316990:five_prime_UTR 30.0%
! ACAAAATGCTTCTGAAAATG+AGG - chr8_4:17971390-17971409 Msa1316990:intron 30.0%
AAACCTTTGTACATATACAG+TGG + chr8_4:17971443-17971462 None:intergenic 30.0%
TGCTTTACATTACTACTAGA+AGG - chr8_4:17971845-17971864 Msa1316990:five_prime_UTR 30.0%
TCAATGAGTGCACAAAAAAT+TGG + chr8_4:17971871-17971890 None:intergenic 30.0%
!!! ATTTTTTGTGCACTCATTGA+TGG - chr8_4:17971871-17971890 Msa1316990:five_prime_UTR 30.0%
GATTTCCAAACTGTTGTATT+TGG - chr8_4:17971909-17971928 Msa1316990:five_prime_UTR 30.0%
GAAATCCAAATACAACAGTT+TGG + chr8_4:17971917-17971936 None:intergenic 30.0%
TTTATCAAAACCAACCTTGG+TGG - chr8_4:17966868-17966887 Msa1316990:three_prime_UTR 35.0%
GTAGAAGGAAAAGAAGGAAA+AGG + chr8_4:17966907-17966926 None:intergenic 35.0%
AGCACTTATAGTTATGGAAG+TGG - chr8_4:17967194-17967213 Msa1316990:CDS 35.0%
TGTATGGCAACTGAAACAAT+AGG + chr8_4:17967438-17967457 None:intergenic 35.0%
GAATAGAGATCAGATGTTTC+TGG + chr8_4:17967706-17967725 None:intergenic 35.0%
AATTTACGTAGTCAGCACAT+CGG + chr8_4:17967737-17967756 None:intergenic 35.0%
TTCTGTCCAGATTTGAAGAT+TGG - chr8_4:17967952-17967971 Msa1316990:CDS 35.0%
TGACTTCCAATCTTCAAATC+TGG + chr8_4:17967961-17967980 None:intergenic 35.0%
!!! TTTTTTGCTGGAGTAACACT+TGG + chr8_4:17968053-17968072 None:intergenic 35.0%
!! TTGTTCCATTTCTGAAGTAG+TGG + chr8_4:17968131-17968150 None:intergenic 35.0%
! CTTTGTTATAACGTGTGTGA+TGG - chr8_4:17968154-17968173 Msa1316990:CDS 35.0%
ATCATCTTTCAGTTTCGAAC+CGG - chr8_4:17968311-17968330 Msa1316990:CDS 35.0%
ATAGCAAAAGGATCATCAAC+CGG + chr8_4:17968377-17968396 None:intergenic 35.0%
GAAGTGGAAGAATTGATAGA+AGG + chr8_4:17968436-17968455 None:intergenic 35.0%
GTACTATATTCTGATACCTG+AGG + chr8_4:17968458-17968477 None:intergenic 35.0%
TTGACTAATGCTCTTAAGCA+TGG - chr8_4:17968658-17968677 Msa1316990:intron 35.0%
AATGAAGTAACAAGCACTTC+TGG - chr8_4:17968923-17968942 Msa1316990:intron 35.0%
GTATATTAACTGAGACAGCA+TGG - chr8_4:17968945-17968964 Msa1316990:intron 35.0%
!! ATTAGGTTGTTGGAGCATTT+TGG - chr8_4:17969115-17969134 Msa1316990:intron 35.0%
TTTCGATAGAATCAGAGTTG+CGG - chr8_4:17969145-17969164 Msa1316990:intron 35.0%
!! AATTCTTCTACTGCTTTTGG+TGG - chr8_4:17969385-17969404 Msa1316990:CDS 35.0%
!! ATTCTTCTACTGCTTTTGGT+GGG - chr8_4:17969386-17969405 Msa1316990:CDS 35.0%
! TTGTTACTTGCAGTTCTGTT+GGG - chr8_4:17969759-17969778 Msa1316990:CDS 35.0%
TCGAAAAAAAGTCTTGGCTT+TGG + chr8_4:17970006-17970025 None:intergenic 35.0%
AAGAGATGAGAATCAAAAGG+AGG - chr8_4:17970209-17970228 Msa1316990:intron 35.0%
AGAGATGAGAATCAAAAGGA+GGG - chr8_4:17970210-17970229 Msa1316990:intron 35.0%
ATTCTTTGCTTCAAGTGATC+CGG + chr8_4:17970268-17970287 None:intergenic 35.0%
ACTTGAAGCAAAGAATTCGA+CGG - chr8_4:17970272-17970291 Msa1316990:CDS 35.0%
GACGGTATGAACAATACAAA+TGG - chr8_4:17970290-17970309 Msa1316990:CDS 35.0%
TACAAATGGCAAGAAAATCG+AGG - chr8_4:17970304-17970323 Msa1316990:CDS 35.0%
TGTCTCTTCTCAGATCTTTA+GGG + chr8_4:17970360-17970379 None:intergenic 35.0%
ATGTCTCTTCTCAGATCTTT+AGG + chr8_4:17970361-17970380 None:intergenic 35.0%
! TGATGATAGGTGCCAATTTT+TGG - chr8_4:17970489-17970508 Msa1316990:CDS 35.0%
AATGTGTGATAAACTGAAGC+CGG - chr8_4:17970539-17970558 Msa1316990:CDS 35.0%
! CGAAACTTTTCTCGGTATAA+AGG + chr8_4:17970566-17970585 None:intergenic 35.0%
CGAAATAGGTAAGTTTGAAG+AGG + chr8_4:17970754-17970773 None:intergenic 35.0%
TCAACTGTACTAGTCGAAAT+AGG + chr8_4:17970768-17970787 None:intergenic 35.0%
! AAAATTTCACCTTGGATTGG+AGG - chr8_4:17970997-17971016 Msa1316990:intron 35.0%
AGTCTCACATTTCCTCATAT+AGG + chr8_4:17971183-17971202 None:intergenic 35.0%
TATGAGGAAATGTGAGACTA+TGG - chr8_4:17971184-17971203 Msa1316990:intron 35.0%
CTCAAACATTGTCATCAATG+AGG + chr8_4:17971256-17971275 None:intergenic 35.0%
! ATTGATGACAATGTTTGAGC+AGG - chr8_4:17971257-17971276 Msa1316990:intron 35.0%
GTTCCACTGTATATGTACAA+AGG - chr8_4:17971437-17971456 Msa1316990:intron 35.0%
TCTCAAGTGCTTTAATGCAT+TGG + chr8_4:17971470-17971489 None:intergenic 35.0%
GTAAGAATGTCTAGTGATTG+TGG - chr8_4:17971820-17971839 Msa1316990:intron 35.0%
! CATTCTGCTTTGGTTCCTAT+AGG - chr8_4:17966814-17966833 Msa1316990:three_prime_UTR 40.0%
! TGCTTTGGTTCCTATAGGTA+AGG - chr8_4:17966819-17966838 Msa1316990:three_prime_UTR 40.0%
GAAAAACAGTAACACCACCA+AGG + chr8_4:17966885-17966904 None:intergenic 40.0%
TCCATATCAACCTGAGAGAA+GGG + chr8_4:17967015-17967034 None:intergenic 40.0%
! CCATAACTATAAGTGCTGCA+TGG + chr8_4:17967191-17967210 None:intergenic 40.0%
CCATGCAGCACTTATAGTTA+TGG - chr8_4:17967188-17967207 Msa1316990:CDS 40.0%
CAGGAAATCCGAATTCGTAT+AGG + chr8_4:17967561-17967580 None:intergenic 40.0%
ACTACGTGAATGAGTGCAAT+CGG + chr8_4:17967590-17967609 None:intergenic 40.0%
TTGCGAATTCGGATTCTTTG+AGG + chr8_4:17967774-17967793 None:intergenic 40.0%
AATCCGAATTCGCAAGTTAG+TGG - chr8_4:17967779-17967798 Msa1316990:CDS 40.0%
! GAACCACTAACTTGCGAATT+CGG + chr8_4:17967785-17967804 None:intergenic 40.0%
CATTGGAAAAACCAGCTTCT+AGG - chr8_4:17968081-17968100 Msa1316990:CDS 40.0%
AAGGTCCACTACTTCAGAAA+TGG - chr8_4:17968123-17968142 Msa1316990:CDS 40.0%
TGTTCTGGTCATCAATCACA+GGG + chr8_4:17968211-17968230 None:intergenic 40.0%
TTGTTCTGGTCATCAATCAC+AGG + chr8_4:17968212-17968231 None:intergenic 40.0%
TCATCTTTCAGTTTCGAACC+GGG - chr8_4:17968312-17968331 Msa1316990:CDS 40.0%
!! TTCTTCGCGCATTTTTGGAA+GGG - chr8_4:17968346-17968365 Msa1316990:CDS 40.0%
ATCAATTCTTCCACTTCCTC+AGG - chr8_4:17968439-17968458 Msa1316990:CDS 40.0%
TATTCTGATACCTGAGGAAG+TGG + chr8_4:17968452-17968471 None:intergenic 40.0%
AGCATGGTTAACAGTATCGT+AGG - chr8_4:17968674-17968693 Msa1316990:intron 40.0%
GCAATGATTCCAATTCCACA+AGG - chr8_4:17968812-17968831 Msa1316990:intron 40.0%
ATATATGGAACTGAGCCTTG+TGG + chr8_4:17968830-17968849 None:intergenic 40.0%
GTATAGATTCGCATGAGTCT+TGG + chr8_4:17968896-17968915 None:intergenic 40.0%
GTTGGGCCAATAATATCATC+AGG + chr8_4:17969291-17969310 None:intergenic 40.0%
! GGCCCAACAGTTTTCAATTT+TGG - chr8_4:17969303-17969322 Msa1316990:CDS 40.0%
!! TTCTTCTACTGCTTTTGGTG+GGG - chr8_4:17969387-17969406 Msa1316990:CDS 40.0%
GTTGTTGATCTTCTCTGCTT+AGG - chr8_4:17969429-17969448 Msa1316990:CDS 40.0%
! GTTGTTACTTGCAGTTCTGT+TGG - chr8_4:17969758-17969777 Msa1316990:CDS 40.0%
GCAATCTTCATTGCTGTCTT+TGG - chr8_4:17969824-17969843 Msa1316990:CDS 40.0%
CTTCATTGCTGTCTTTGGAT+TGG - chr8_4:17969829-17969848 Msa1316990:CDS 40.0%
AGGTAATCCTTGGTAAGGAA+GGG - chr8_4:17969882-17969901 Msa1316990:intron 40.0%
! ATAAGTCGGACTGACTTACA+AGG - chr8_4:17969924-17969943 Msa1316990:intron 40.0%
! TAAGTCGGACTGACTTACAA+GGG - chr8_4:17969925-17969944 Msa1316990:intron 40.0%
ACATGTGTCCGATATAGACT+AGG + chr8_4:17969958-17969977 None:intergenic 40.0%
! CTTTTCTCGGTATAAAGGAC+CGG + chr8_4:17970561-17970580 None:intergenic 40.0%
! AGTTCTTCCACCATTTGTTG+TGG + chr8_4:17970652-17970671 None:intergenic 40.0%
! ACAACAAATGGTGGAAGAAC+TGG - chr8_4:17970651-17970670 Msa1316990:CDS 40.0%
AAAATCACCAGCCTTGAGTT+CGG + chr8_4:17970691-17970710 None:intergenic 40.0%
GGTAAGTTTGAAGAGGTTGT+AGG + chr8_4:17970747-17970766 None:intergenic 40.0%
!!! GCAGGTTTTATTCCTTGCAA+TGG - chr8_4:17971275-17971294 Msa1316990:intron 40.0%
!!! GGTTTTATTCCTTGCAATGG+AGG - chr8_4:17971278-17971297 Msa1316990:intron 40.0%
CGCGGTTCATACAAGTAATA+TGG - chr8_4:17971311-17971330 Msa1316990:intron 40.0%
!! AAGTAATATGGCGTCGATAC+AGG - chr8_4:17971323-17971342 Msa1316990:CDS 40.0%
!! AGTAATATGGCGTCGATACA+GGG - chr8_4:17971324-17971343 Msa1316990:exon 40.0%
TATACAGTGGAACCAATGCT+TGG + chr8_4:17971430-17971449 None:intergenic 40.0%
! GCATTAAAGCACTTGAGAAG+TGG - chr8_4:17971472-17971491 Msa1316990:intron 40.0%
!! AGGCACAAATAACTTGCTAG+TGG - chr8_4:17971737-17971756 Msa1316990:intron 40.0%
AACAGTAACACCACCAAGGT+TGG + chr8_4:17966881-17966900 None:intergenic 45.0%
TATCAACCTGAGAGAAGGGT+TGG + chr8_4:17967011-17967030 None:intergenic 45.0%
!! ACCCTTCTCTCAGGTTGATA+TGG - chr8_4:17967011-17967030 Msa1316990:three_prime_UTR 45.0%
CTCCATATCAACCTGAGAGA+AGG + chr8_4:17967016-17967035 None:intergenic 45.0%
CATTCACGTAGTCAGCACAT+CGG - chr8_4:17967598-17967617 Msa1316990:intron 45.0%
GTCGTTTGATCGACATCGAA+CGG - chr8_4:17967623-17967642 Msa1316990:intron 45.0%
TGCAGTGTTCTTGATCCACA+AGG - chr8_4:17968104-17968123 Msa1316990:CDS 45.0%
!! TTCTGAAGTAGTGGACCTTG+TGG + chr8_4:17968122-17968141 None:intergenic 45.0%
GTGTGTGATGGCAGTATCTA+TGG - chr8_4:17968166-17968185 Msa1316990:CDS 45.0%
! CGAAGAAGGTGCAATAAACC+CGG + chr8_4:17968333-17968352 None:intergenic 45.0%
CTTCCAAAAATGCGCGAAGA+AGG + chr8_4:17968347-17968366 None:intergenic 45.0%
!! CTTCTTCGCGCATTTTTGGA+AGG - chr8_4:17968345-17968364 Msa1316990:CDS 45.0%
!! TCTTCGCGCATTTTTGGAAG+GGG - chr8_4:17968347-17968366 Msa1316990:CDS 45.0%
TAGAATCAGAGTTGCGGTGT+TGG - chr8_4:17969151-17969170 Msa1316990:intron 45.0%
GATGATTCCTATCTGAGCTG+CGG - chr8_4:17969204-17969223 Msa1316990:intron 45.0%
! GGGTTTGCGCAATTTAAGGT+TGG - chr8_4:17969407-17969426 Msa1316990:CDS 45.0%
GGAAACATGCAGGTAATCCT+TGG - chr8_4:17969872-17969891 Msa1316990:CDS 45.0%
CATGCAGGTAATCCTTGGTA+AGG - chr8_4:17969877-17969896 Msa1316990:CDS 45.0%
CAGGTAATCCTTGGTAAGGA+AGG - chr8_4:17969881-17969900 Msa1316990:intron 45.0%
GCCTACGACCTAGTCTATAT+CGG - chr8_4:17969947-17969966 Msa1316990:intron 45.0%
TCCGATATAGACTAGGTCGT+AGG + chr8_4:17969951-17969970 None:intergenic 45.0%
AAAGGAGGGATGCAGAACAA+TGG - chr8_4:17970224-17970243 Msa1316990:intron 45.0%
TCAAGTGATCCGGTAGCATA+CGG + chr8_4:17970258-17970277 None:intergenic 45.0%
! CTCTTCTCAGATCTTTAGGG+AGG + chr8_4:17970357-17970376 None:intergenic 45.0%
!!! GGTGCCAATTTTTGGCAACA+TGG - chr8_4:17970497-17970516 Msa1316990:CDS 45.0%
TGTTTGTGAAGGTGATCCAG+TGG - chr8_4:17970587-17970606 Msa1316990:CDS 45.0%
!! ATGAAGAGCATTTCGTCCAC+TGG + chr8_4:17970606-17970625 None:intergenic 45.0%
GAAATGCTCTTCATCATGCG+CGG - chr8_4:17970612-17970631 Msa1316990:CDS 45.0%
CTTAAGACCGCCACAACAAA+TGG - chr8_4:17970639-17970658 Msa1316990:CDS 45.0%
!! TCTTCCACCATTTGTTGTGG+CGG + chr8_4:17970649-17970668 None:intergenic 45.0%
CTTTAACTCGTCCGAACTCA+AGG - chr8_4:17970677-17970696 Msa1316990:CDS 45.0%
! CTCAAGGCTGGTGATTTTTG+TGG - chr8_4:17970693-17970712 Msa1316990:CDS 45.0%
TGGAGAGGAGCTTCTAACAT+GGG - chr8_4:17970713-17970732 Msa1316990:CDS 45.0%
TGAAGAGGTTGTAGGATCCA+AGG + chr8_4:17970739-17970758 None:intergenic 45.0%
CTCTCATGCATGATGACTTG+AGG - chr8_4:17970814-17970833 Msa1316990:intron 45.0%
AAGACCTCCAACACACTTTC+AGG - chr8_4:17970874-17970893 Msa1316990:intron 45.0%
TCAGTTATGCCTCCAATCCA+AGG + chr8_4:17971009-17971028 None:intergenic 45.0%
ATTCCTTGCAATGGAGGACA+TGG - chr8_4:17971284-17971303 Msa1316990:intron 45.0%
TTCCTTGCAATGGAGGACAT+GGG - chr8_4:17971285-17971304 Msa1316990:intron 45.0%
! GCGTCGATACAGGGAAAAAA+GGG - chr8_4:17971333-17971352 Msa1316990:exon 45.0%
GAGTCTTCTTCACCAAGCAT+TGG - chr8_4:17971415-17971434 Msa1316990:intron 45.0%
!! TCTGGTTTCTGAGGCAAAAG+TGG + chr8_4:17971529-17971548 None:intergenic 45.0%
! GTGATGAAATCTGGCTCATC+TGG + chr8_4:17971547-17971566 None:intergenic 45.0%
!!! TTAATTAATTATTTTACAAA+AGG - chr8_4:17967518-17967537 Msa1316990:intron 5.0%
AGAACACTGCACCTAGAAGC+TGG + chr8_4:17968095-17968114 None:intergenic 50.0%
! GCACCTTCTTCGCGCATTTT+TGG - chr8_4:17968341-17968360 Msa1316990:CDS 50.0%
!! CATTTTTGGAAGGGGAGAGC+CGG - chr8_4:17968355-17968374 Msa1316990:CDS 50.0%
! GGAACTGAGCCTTGTGGAAT+TGG + chr8_4:17968824-17968843 None:intergenic 50.0%
TTAACTGAGACAGCATGGGC+TGG - chr8_4:17968950-17968969 Msa1316990:intron 50.0%
TGATGCTCTAACCTCTCGTG+TGG - chr8_4:17969335-17969354 Msa1316990:CDS 50.0%
ATTCAACTCCACCACACGAG+AGG + chr8_4:17969349-17969368 None:intergenic 50.0%
GGTGGGGTTTGCGCAATTTA+AGG - chr8_4:17969403-17969422 Msa1316990:CDS 50.0%
CTCAGATCCCTTCCTTACCA+AGG + chr8_4:17969892-17969911 None:intergenic 50.0%
AAGACCGCCACAACAAATGG+TGG - chr8_4:17970642-17970661 Msa1316990:CDS 50.0%
! GGCTGGTGATTTTTGTGGAG+AGG - chr8_4:17970698-17970717 Msa1316990:CDS 50.0%
GTGGAGAGGAGCTTCTAACA+TGG - chr8_4:17970712-17970731 Msa1316990:CDS 50.0%
! CTTGCCTGAAAGTGTGTTGG+AGG + chr8_4:17970881-17970900 None:intergenic 50.0%
CTCCAACACACTTTCAGGCA+AGG - chr8_4:17970879-17970898 Msa1316990:intron 50.0%
! AGCCTTGCCTGAAAGTGTGT+TGG + chr8_4:17970884-17970903 None:intergenic 50.0%
TCCTTGCAATGGAGGACATG+GGG - chr8_4:17971286-17971305 Msa1316990:intron 50.0%
!! GGCGTCGATACAGGGAAAAA+AGG - chr8_4:17971332-17971351 Msa1316990:exon 50.0%
! TCTGGCTCATCTGGTTTCTG+AGG + chr8_4:17971538-17971557 None:intergenic 50.0%
GTGAAGCCAACCCTTCTCTC+AGG - chr8_4:17967002-17967021 Msa1316990:three_prime_UTR 55.0%
TGAGTGCAATCGGTGACTGC+AGG + chr8_4:17967580-17967599 None:intergenic 55.0%
TCACGTAGTCAGCACATCGG+TGG - chr8_4:17967601-17967620 Msa1316990:intron 55.0%
GAATCGTCCGCAGCTCAGAT+AGG + chr8_4:17969214-17969233 None:intergenic 55.0%
TGCTCTAACCTCTCGTGTGG+TGG - chr8_4:17969338-17969357 Msa1316990:CDS 55.0%
GATGTGCCACCGTATGCTAC+CGG - chr8_4:17970246-17970265 Msa1316990:CDS 55.0%
AGTGATCCGGTAGCATACGG+TGG + chr8_4:17970255-17970274 None:intergenic 55.0%
AACTCGTCCGAACTCAAGGC+TGG - chr8_4:17970681-17970700 Msa1316990:CDS 55.0%
GGAGCTTCTAACATGGGCCT+TGG - chr8_4:17970719-17970738 Msa1316990:intron 55.0%
TCCCCATGTCCTCCATTGCA+AGG + chr8_4:17971290-17971309 None:intergenic 55.0%
AATGGAGGACATGGGGAGCG+CGG - chr8_4:17971293-17971312 Msa1316990:intron 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 17966729 17971967 17966729 ID=Msa1316990;Name=Msa1316990
chr8_4 mRNA 17966729 17971967 17966729 ID=Msa1316990-mRNA-1;Parent=Msa1316990;Name=Msa1316990-mRNA-1;_AED=0.11;_eAED=0.11;_QI=174|0.77|0.8|1|0.66|0.6|10|342|717
chr8_4 exon 17966729 17967054 17966729 ID=Msa1316990-mRNA-1:exon:6630;Parent=Msa1316990-mRNA-1
chr8_4 exon 17967101 17967417 17967101 ID=Msa1316990-mRNA-1:exon:6629;Parent=Msa1316990-mRNA-1
chr8_4 exon 17967708 17968198 17967708 ID=Msa1316990-mRNA-1:exon:6628;Parent=Msa1316990-mRNA-1
chr8_4 exon 17968282 17968518 17968282 ID=Msa1316990-mRNA-1:exon:6627;Parent=Msa1316990-mRNA-1
chr8_4 exon 17968846 17968924 17968846 ID=Msa1316990-mRNA-1:exon:6626;Parent=Msa1316990-mRNA-1
chr8_4 exon 17969272 17969576 17969272 ID=Msa1316990-mRNA-1:exon:6625;Parent=Msa1316990-mRNA-1
chr8_4 exon 17969684 17969896 17969684 ID=Msa1316990-mRNA-1:exon:6624;Parent=Msa1316990-mRNA-1
chr8_4 exon 17970236 17970734 17970236 ID=Msa1316990-mRNA-1:exon:6623;Parent=Msa1316990-mRNA-1
chr8_4 exon 17971314 17971392 17971314 ID=Msa1316990-mRNA-1:exon:6622;Parent=Msa1316990-mRNA-1
chr8_4 exon 17971844 17971967 17971844 ID=Msa1316990-mRNA-1:exon:6621;Parent=Msa1316990-mRNA-1
chr8_4 five_prime_UTR 17971844 17971967 17971844 ID=Msa1316990-mRNA-1:five_prime_utr;Parent=Msa1316990-mRNA-1
chr8_4 five_prime_UTR 17971343 17971392 17971343 ID=Msa1316990-mRNA-1:five_prime_utr;Parent=Msa1316990-mRNA-1
chr8_4 CDS 17971314 17971342 17971314 ID=Msa1316990-mRNA-1:cds;Parent=Msa1316990-mRNA-1
chr8_4 CDS 17970236 17970734 17970236 ID=Msa1316990-mRNA-1:cds;Parent=Msa1316990-mRNA-1
chr8_4 CDS 17969684 17969896 17969684 ID=Msa1316990-mRNA-1:cds;Parent=Msa1316990-mRNA-1
chr8_4 CDS 17969272 17969576 17969272 ID=Msa1316990-mRNA-1:cds;Parent=Msa1316990-mRNA-1
chr8_4 CDS 17968846 17968924 17968846 ID=Msa1316990-mRNA-1:cds;Parent=Msa1316990-mRNA-1
chr8_4 CDS 17968282 17968518 17968282 ID=Msa1316990-mRNA-1:cds;Parent=Msa1316990-mRNA-1
chr8_4 CDS 17967708 17968198 17967708 ID=Msa1316990-mRNA-1:cds;Parent=Msa1316990-mRNA-1
chr8_4 CDS 17967117 17967417 17967117 ID=Msa1316990-mRNA-1:cds;Parent=Msa1316990-mRNA-1
chr8_4 three_prime_UTR 17967101 17967116 17967101 ID=Msa1316990-mRNA-1:three_prime_utr;Parent=Msa1316990-mRNA-1
chr8_4 three_prime_UTR 17966729 17967054 17966729 ID=Msa1316990-mRNA-1:three_prime_utr;Parent=Msa1316990-mRNA-1
Gene Sequence

>Msa1316990

ATGACTACAAATGAAAAGAAATTTGTGAGATTTGAAGATTGGAAGTCAGAATCATCATCTTTTAATTTTTCACAATATGATTCTTCAATTGATGGATTTGAAAAAAGAAAATCTAAACCAAGTGTTACTCCAGCAAAAAATAATGAATCATTGGAAAAACCAGCTTCTAGGTGCAGTGTTCTTGATCCACAAGGTCCACTACTTCAGAAATGGAACAAGATCTTTGTTATAACGTGTGTGATGGCAGTATCTATGGATCCATTATTCTTTTACATCCCTGTGATTGATGACCAGAACAAATGCCTTAATTTGAATGGAACATTGAAGATTACTGCTAGTGTTCTTCGCACGTTTTTCGATCTTTTCTACATTATTCGCATCATCTTTCAGTTTCGAACCGGGTTTATTGCACCTTCTTCGCGCATTTTTGGAAGGGGAGAGCCGGTTGATGATCCTTTTGCTATAGCAATGAGATACTTAAGTTCTCACTTCATCATTGACCTTCTATCAATTCTTCCACTTCCTCAGATGGTGATTTTAGCAATGATTCCAATTCCACAAGGCTCAGTTCCATATATAACAAAGGATTGGTTGAAGTATACGATAATAACACAGTACGCGCCAAGACTCATGCGAATCTATACGTTGTTCAATGAAGTAACAAGCACTTCTGGTATATTAACTGAGACAGCATGGGCTGGAGCTGCTTATAATCTCTTTCTTTATATGCTAGCAAGTCATGTTGTTGGAGCATTTTGGTATTTGTTTTCGATAGAATCAGAGTTGCGGTGTTGGCGCAGACGATTGAAGAATACTCCATTCTTTGATGATTCCTATCTGAGCTGCGGACGATTCAATTCGACGCTTTTTTCAATTCTCAACAACTCTACTACTTGTCCTTACAATGATCCTGATGATATTATTGGCCCAACAGTTTTCAATTTTGGAATATTTATTGATGCTCTAACCTCTCGTGTGGTGGAGTTGAATACAAACTTTCATCATAAATTCTTCTACTGCTTTTGGTGGGGTTTGCGCAATTTAAGTTCTGTTGGGCAGAACCTGAAAACAAGCACTTATATTGGGGAGATAATCTTTGCAATCTTCATTGCTGTCTTTGGATTGAAATATCTACAATCTACAACTGTTAGAGTTGAAGAGATGAGAATCAAAAGGAGGGATGCAGAACAATGGATGTGCCACCGTATGCTACCGGATCACTTGAAGCAAAGAATTCGACGGTATGAACAATACAAATGGCAAGAAAATCGAGGCGTCGAAGAAGAGAAACTAATTTACAACCTCCCTAAAGATCTGAGAAGAGACATAAAGAGACATCTTTGCTTAGATTTACTTAAAAAAGTGCCAATTTTTGGCAACATGGATAAACAGTTATTGGATGCAATGTGTGATAAACTGAAGCCGGTCCTTTATACCGAGAAAAGTTTCGTTGTTTGTGAAGGTGATCCAGTGGACGAAATGCTCTTCATCATGCGCGGAAAACTTAAGACCGCCACAACAAATGGTGGAAGAACTGGTTTCTTTAACTCGTCCGAACTCAAGGCTGGTGATTTTTGTGGAGAGGAGCTTCTAACATGGGCCTTGGATCCTACAACCTCTTCAAACTTACCTATTTCGACTAGTACAGTTGAAACTATTACGGAAGTTGAAGCTTTTGCTCTCATGCATGATGACTTGAGGATCGTTGCTTCCCAATTTCGACGTCTTATTAACAGAAAAGACCTCCAACACACTTTCAGGCAAGGCTTGATATATTTTTTCACCTTAGATAATGCATCATTTCGTTTTTGTAGAAAAAATTTACATTATAAGAAACAAGGTGCATTGCAGAAGTTTTATTCCTTGCAATGGAGGACATGGGGAGCGCGGTTCATACAAGTAATATGGCGTCGATACAGGGAAAAAAGGGCTCAGAAATTGTTACGTGAAACGGAAAAAAGACAACAAAATGCTTCTGAAAATGAGGAAGAGTCTTCTTCACCAAGCATTGGTTCCACTGTATATGTACAAAGGTTTGCATCCAATGCATTAAAGCACTTGAGAAGTGGCAAAAGAGTGACACAGACAAAGAAATTTCTACCACTTTTGCCTCAGAAACCAGATGAGCCAGATTTCATCACTCAAAAAAATTAA
Protein sequence

>Msa1316990

MTTNEKKFVRFEDWKSESSSFNFSQYDSSIDGFEKRKSKPSVTPAKNNESLEKPASRCSVLDPQGPLLQKWNKIFVITCVMAVSMDPLFFYIPVIDDQNKCLNLNGTLKITASVLRTFFDLFYIIRIIFQFRTGFIAPSSRIFGRGEPVDDPFAIAMRYLSSHFIIDLLSILPLPQMVILAMIPIPQGSVPYITKDWLKYTIITQYAPRLMRIYTLFNEVTSTSGILTETAWAGAAYNLFLYMLASHVVGAFWYLFSIESELRCWRRRLKNTPFFDDSYLSCGRFNSTLFSILNNSTTCPYNDPDDIIGPTVFNFGIFIDALTSRVVELNTNFHHKFFYCFWWGLRNLSSVGQNLKTSTYIGEIIFAIFIAVFGLKYLQSTTVRVEEMRIKRRDAEQWMCHRMLPDHLKQRIRRYEQYKWQENRGVEEEKLIYNLPKDLRRDIKRHLCLDLLKKVPIFGNMDKQLLDAMCDKLKPVLYTEKSFVVCEGDPVDEMLFIMRGKLKTATTNGGRTGFFNSSELKAGDFCGEELLTWALDPTTSSNLPISTSTVETITEVEAFALMHDDLRIVASQFRRLINRKDLQHTFRQGLIYFFTLDNASFRFCRKNLHYKKQGALQKFYSLQWRTWGARFIQVIWRRYREKRAQKLLRETEKRQQNASENEEESSSPSIGSTVYVQRFASNALKHLRSGKRVTQTKKFLPLLPQKPDEPDFITQKN*