Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1317420 | sp|Q99089|CPRF1_PETCR | 52.436 | 431 | 174 | 11 | 1 | 421 | 1 | 410 | 1.48e-131 | 387 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1317420 | A0A072TNE8 | 95.735 | 422 | 18 | 0 | 1 | 422 | 1 | 422 | 0.0 | 832 |
Gene ID | Type | Classification |
---|---|---|
Msa1317420 | TF | bZIP |
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa1278150 | Msa1317420 | 0.823787 | 1.147712e-53 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1317420 | MtrunA17_Chr8g0347741 | 95.735 | 422 | 18 | 0 | 1 | 422 | 1 | 422 | 0.0 | 832 |
Msa1317420 | MtrunA17_Chr7g0275321 | 70.629 | 429 | 113 | 7 | 1 | 421 | 1 | 424 | 0.0 | 588 |
Msa1317420 | MtrunA17_Chr5g0410531 | 35.492 | 386 | 199 | 15 | 1 | 347 | 1 | 375 | 4.85e-47 | 166 |
Msa1317420 | MtrunA17_Chr8g0369161 | 33.498 | 406 | 197 | 16 | 1 | 354 | 1 | 385 | 1.82e-41 | 151 |
Msa1317420 | MtrunA17_Chr8g0373571 | 35.376 | 359 | 190 | 11 | 1 | 348 | 1 | 328 | 3.65e-39 | 143 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1317420 | AT2G46270.1 | 52.927 | 427 | 149 | 16 | 1 | 421 | 1 | 381 | 1.13e-118 | 351 |
Msa1317420 | AT2G46270.3 | 52.927 | 427 | 149 | 16 | 1 | 421 | 1 | 381 | 1.13e-118 | 351 |
Msa1317420 | AT2G46270.2 | 51.054 | 427 | 134 | 15 | 1 | 421 | 1 | 358 | 1.49e-108 | 324 |
Msa1317420 | AT2G46270.4 | 51.054 | 427 | 134 | 15 | 1 | 421 | 1 | 358 | 1.49e-108 | 324 |
Msa1317420 | AT4G01120.1 | 43.529 | 425 | 172 | 14 | 1 | 422 | 1 | 360 | 1.79e-83 | 260 |
Msa1317420 | AT2G35530.1 | 35.897 | 351 | 166 | 17 | 36 | 347 | 42 | 372 | 9.67e-40 | 147 |
Msa1317420 | AT4G36730.2 | 34.857 | 350 | 164 | 14 | 1 | 348 | 1 | 288 | 4.81e-36 | 135 |
Msa1317420 | AT1G32150.1 | 36.104 | 385 | 185 | 18 | 1 | 347 | 1 | 362 | 1.68e-35 | 135 |
Msa1317420 | AT4G36730.1 | 34.000 | 350 | 169 | 14 | 1 | 348 | 1 | 290 | 1.47e-34 | 130 |
Msa1317420 | AT5G15830.1 | 40.566 | 106 | 58 | 3 | 272 | 375 | 67 | 169 | 5.79e-11 | 62.0 |
Find 131 sgRNAs with CRISPR-Local
Find 342 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AAAACTGTTAGCAGTAATTT+TGG | 0.154999 | 8_4:+18653416 | None:intergenic |
CGCAGCTTTGCACCAGAATT+TGG | 0.174496 | 8_4:+18653544 | None:intergenic |
TTATATCTTCAGGCATATTA+TGG | 0.179056 | 8_4:-18656462 | Msa1317420:intron |
TGCATTGACTGCTGAGAATT+TGG | 0.206598 | 8_4:-18654044 | Msa1317420:CDS |
GTTGTTGTCGTGTATCTTTC+AGG | 0.247217 | 8_4:-18658524 | Msa1317420:intron |
TTTGTACATTGAAGAGAATT+AGG | 0.276493 | 8_4:-18653261 | Msa1317420:three_prime_UTR |
GTTGGTGTCTCTATGCTTGT+AGG | 0.281246 | 8_4:+18655730 | None:intergenic |
GAAAAGTAATAAATTAGTTT+TGG | 0.291757 | 8_4:+18653348 | None:intergenic |
GTTGGACCTGTACTTTCTTC+AGG | 0.296175 | 8_4:-18654836 | Msa1317420:CDS |
GATTGAAAATGCTACATTAA+AGG | 0.302646 | 8_4:-18653972 | Msa1317420:intron |
GTTTGTTGATTATGTAGTTT+TGG | 0.309343 | 8_4:-18653454 | Msa1317420:three_prime_UTR |
ACCCCTCCATGTGAATAAAA+TGG | 0.310681 | 8_4:+18656190 | None:intergenic |
CTTCCTTAAATGAACGAAAA+TGG | 0.313058 | 8_4:+18658646 | None:intergenic |
TTTGGAAGCAGCAGTCTCTT+TGG | 0.315745 | 8_4:+18654901 | None:intergenic |
GTGCAGTTGAATAATTTCTA+AGG | 0.328604 | 8_4:-18657460 | Msa1317420:five_prime_UTR |
ATTCGACGGGTTGGCTTGAT+TGG | 0.332587 | 8_4:+18657255 | None:intergenic |
TGTGAGAGCAAACCAAATTC+TGG | 0.337122 | 8_4:-18653556 | Msa1317420:CDS |
GAATGAATTGGCTGAAAATT+CGG | 0.342200 | 8_4:-18654005 | Msa1317420:CDS |
AACCCACTTCGAAGAAAATA+AGG | 0.344516 | 8_4:+18658580 | None:intergenic |
ATCAGTGTTTCCAGATGATT+TGG | 0.348179 | 8_4:+18655708 | None:intergenic |
ACTATGCTTACAGTTGTTAC+AGG | 0.353749 | 8_4:+18657355 | None:intergenic |
AAAGCTGGAAAACACTCAAC+TGG | 0.369633 | 8_4:-18653707 | Msa1317420:CDS |
TCCTGATTGGGCTGCCATGC+AGG | 0.378974 | 8_4:-18657221 | Msa1317420:intron |
TGTGGAGCACTAGTGGAAAT+AGG | 0.386291 | 8_4:+18654779 | None:intergenic |
TATATCTTCAGGCATATTAT+GGG | 0.390466 | 8_4:-18656461 | Msa1317420:intron |
TGTGGTGGTCCCCACATGTA+TGG | 0.390846 | 8_4:+18656378 | None:intergenic |
GGAAGTATTTGACTCAATCT+TGG | 0.394614 | 8_4:-18657439 | Msa1317420:five_prime_UTR |
AGAGCTGCAGAGGAAGAAAA+TGG | 0.398971 | 8_4:-18653583 | Msa1317420:CDS |
GCAGCAGCTGAGTTGAAATA+TGG | 0.399898 | 8_4:+18656420 | None:intergenic |
TCCTCTGCAGCTCTATCATC+AGG | 0.402104 | 8_4:+18653592 | None:intergenic |
CAGCCTATGATGCATCCATA+TGG | 0.403301 | 8_4:-18656229 | Msa1317420:CDS |
TGAGAATTTGGCGCTGAAAT+CGG | 0.404953 | 8_4:-18654032 | Msa1317420:CDS |
ACTTTAGAAAGGGTTGTGAT+TGG | 0.406895 | 8_4:-18653223 | Msa1317420:three_prime_UTR |
ATTGGAATCGATATATGATT+TGG | 0.411970 | 8_4:-18653205 | Msa1317420:three_prime_UTR |
ACAGGCCGAGGCTGAAGAAT+TGG | 0.415387 | 8_4:-18654080 | Msa1317420:intron |
ACCTGCATGGCAGCCCAATC+AGG | 0.417831 | 8_4:+18657220 | None:intergenic |
GGTGCATATGGCGGCCCATA+TGG | 0.422943 | 8_4:+18656214 | None:intergenic |
GCCTCCTGAAGCTTGGATGC+AGG | 0.426706 | 8_4:-18654741 | Msa1317420:intron |
GACGGGCTTGCAATGTCAAT+AGG | 0.426918 | 8_4:-18655655 | Msa1317420:CDS |
CAACAAACCAGTGCAAATAC+TGG | 0.433037 | 8_4:+18653469 | None:intergenic |
ATCATCTGGAAACACTGATC+AGG | 0.436322 | 8_4:-18655704 | Msa1317420:CDS |
GTTGCCATCGCTTCCATCGC+TGG | 0.439957 | 8_4:+18655439 | None:intergenic |
AGAAGGCCTTTCAATCTTAA+CGG | 0.439968 | 8_4:+18657381 | None:intergenic |
AAGATCCAGGCTTAGGAAGC+AGG | 0.440032 | 8_4:-18654524 | Msa1317420:intron |
GAGACACCAACCAAATCATC+TGG | 0.448010 | 8_4:-18655718 | Msa1317420:CDS |
ATGTTCACGTCTATCCTGAT+TGG | 0.449162 | 8_4:-18657234 | Msa1317420:CDS |
TTCAACTCAGCTGCTGCTCC+TGG | 0.457412 | 8_4:-18656414 | Msa1317420:CDS |
TGTTCACGTCTATCCTGATT+GGG | 0.463031 | 8_4:-18657233 | Msa1317420:CDS |
GGCCCATATGGATGCATCAT+AGG | 0.470629 | 8_4:+18656226 | None:intergenic |
GAAATCGGAAATGAATGAAT+TGG | 0.472002 | 8_4:-18654017 | Msa1317420:CDS |
TTCAGGTATGACCACATCAC+TGG | 0.473232 | 8_4:-18654819 | Msa1317420:CDS |
AAACTTACAGCAGGTGAAGA+TGG | 0.476285 | 8_4:+18655855 | None:intergenic |
CAATCTTGGTGCTTATCTCA+TGG | 0.479255 | 8_4:-18657425 | Msa1317420:exon |
GGCAAAACTCCACAAGGTTG+TGG | 0.479999 | 8_4:+18654761 | None:intergenic |
GGAAGCGATGGCAACACTAC+AGG | 0.486034 | 8_4:-18655431 | Msa1317420:CDS |
TCATACCTGCTTCCTAAGCC+TGG | 0.486648 | 8_4:+18654519 | None:intergenic |
GAATAAAATGGTGGTGCATA+TGG | 0.490133 | 8_4:+18656202 | None:intergenic |
AGTACCTGCATCCAAGCTTC+AGG | 0.494330 | 8_4:+18654737 | None:intergenic |
CTGCAAGAAGATCCAGGCTT+AGG | 0.497217 | 8_4:-18654531 | Msa1317420:CDS |
TGGTTGTTGGTGTCCCATCC+CGG | 0.497265 | 8_4:+18655269 | None:intergenic |
TTTATCATACCAGTGGTTGT+TGG | 0.502643 | 8_4:+18655256 | None:intergenic |
ATATAGGGGTCGAATTCAAA+TGG | 0.506926 | 8_4:-18655888 | Msa1317420:intron |
ACCTTATAGTATCTGAGAAA+AGG | 0.515621 | 8_4:-18653152 | Msa1317420:three_prime_UTR |
GACGTGAACATTCGACGGGT+TGG | 0.516747 | 8_4:+18657246 | None:intergenic |
TGGAACAAGGAAAAGAAGCC+GGG | 0.517217 | 8_4:-18655287 | Msa1317420:CDS |
TCGTGCCAATTCTTCAGCCT+CGG | 0.521120 | 8_4:+18654075 | None:intergenic |
TGCAGCTCTATCATCAGGAT+TGG | 0.521412 | 8_4:+18653597 | None:intergenic |
ATTACTTGAATAGATGGAGA+AGG | 0.522234 | 8_4:-18654953 | Msa1317420:intron |
ACAGTTGTTACAGGTGAAGA+AGG | 0.523511 | 8_4:+18657364 | None:intergenic |
AGCCTATGATGCATCCATAT+GGG | 0.523891 | 8_4:-18656228 | Msa1317420:CDS |
ATACATGTGGGGACCACCAC+AGG | 0.528881 | 8_4:-18656376 | Msa1317420:intron |
TTACTTGAATAGATGGAGAA+GGG | 0.530286 | 8_4:-18654952 | Msa1317420:intron |
CTCATGGGAAACAGCGAGGA+TGG | 0.530777 | 8_4:-18657409 | Msa1317420:CDS |
AATCTTGGTGCTTATCTCAT+GGG | 0.533227 | 8_4:-18657424 | Msa1317420:exon |
GAACAAACCTCCGTGATAGC+TGG | 0.533419 | 8_4:+18655593 | None:intergenic |
ATGGAACAAGGAAAAGAAGC+CGG | 0.533912 | 8_4:-18655288 | Msa1317420:CDS |
ACAAGGTTGTGGAGCACTAG+TGG | 0.537578 | 8_4:+18654772 | None:intergenic |
GAAAATCCGTTAAGATTGAA+AGG | 0.538090 | 8_4:-18657387 | Msa1317420:CDS |
GTGAATCTGCAAGAAGATCC+AGG | 0.538433 | 8_4:-18654537 | Msa1317420:CDS |
TTGAAAACCAGTATTTGCAC+TGG | 0.541531 | 8_4:-18653476 | Msa1317420:exon |
GCTGCCACAGCATTAGCTCT+AGG | 0.543381 | 8_4:+18653502 | None:intergenic |
AAATAGGAGAAGGGTTCCTC+AGG | 0.546191 | 8_4:+18654795 | None:intergenic |
TGCTCCTCACCCATACATGT+GGG | 0.547429 | 8_4:-18656388 | Msa1317420:CDS |
GATACTGAGGGTTCCAGCGA+TGG | 0.548274 | 8_4:-18655452 | Msa1317420:CDS |
CAAGGAAAAGAAGCCGGGAT+GGG | 0.549908 | 8_4:-18655282 | Msa1317420:CDS |
TCATCTGGAAACACTGATCA+GGG | 0.569446 | 8_4:-18655703 | Msa1317420:CDS |
GAAGCGATGGCAACACTACA+GGG | 0.570248 | 8_4:-18655430 | Msa1317420:CDS |
GAGCTGAAAACCAGCTATCA+CGG | 0.570429 | 8_4:-18655603 | Msa1317420:CDS |
GCACTAGTGGAAATAGGAGA+AGG | 0.571583 | 8_4:+18654785 | None:intergenic |
TTTGAACGGCATTGACAAGA+GGG | 0.571991 | 8_4:-18653665 | Msa1317420:CDS |
ACAAGGAAAAGAAGCCGGGA+TGG | 0.577909 | 8_4:-18655283 | Msa1317420:CDS |
TATGGGTGAGGAGCATGACC+AGG | 0.581544 | 8_4:+18656396 | None:intergenic |
GGTTCCAGCGATGGAAGCGA+TGG | 0.582155 | 8_4:-18655443 | Msa1317420:CDS |
TTTCTGTTTAGATTTGATAG+GGG | 0.582214 | 8_4:-18653300 | Msa1317420:three_prime_UTR |
TCCTGATGATAGAGCTGCAG+AGG | 0.584828 | 8_4:-18653593 | Msa1317420:CDS |
ACTAGTGCTCCACAACCTTG+TGG | 0.584842 | 8_4:-18654770 | Msa1317420:CDS |
GATGGGACACCAACAACCAC+TGG | 0.585041 | 8_4:-18655265 | Msa1317420:intron |
GGTCCCCACATGTATGGGTG+AGG | 0.585719 | 8_4:+18656384 | None:intergenic |
ATGCTCCTCACCCATACATG+TGG | 0.594125 | 8_4:-18656389 | Msa1317420:CDS |
CAAAAGGTTGGTAACCTGCA+TGG | 0.594851 | 8_4:+18657207 | None:intergenic |
GTGTTTCCAGATGATTTGGT+TGG | 0.595146 | 8_4:+18655712 | None:intergenic |
GGGTCGAATTCAAATGGTCA+AGG | 0.595761 | 8_4:-18655882 | Msa1317420:CDS |
GTTCCTCAGGTCCAGTGATG+TGG | 0.595870 | 8_4:+18654808 | None:intergenic |
CTATGGAGCACTACCTGTGG+TGG | 0.596426 | 8_4:+18656363 | None:intergenic |
CTTGCAATGTCAATAGGCAA+TGG | 0.600080 | 8_4:-18655649 | Msa1317420:CDS |
AAACTTACAATGGCAACGGC+AGG | 0.601671 | 8_4:+18656157 | None:intergenic |
GTGGTGGTCCCCACATGTAT+GGG | 0.604143 | 8_4:+18656379 | None:intergenic |
GCAGCTGAGTTGAAATATGG+TGG | 0.615300 | 8_4:+18656423 | None:intergenic |
CAATGCTATGCACAGACCAA+TGG | 0.615349 | 8_4:-18655307 | Msa1317420:intron |
TATCAACAGTGTGGATACTG+AGG | 0.618321 | 8_4:-18655465 | Msa1317420:intron |
CACTAGTGGAAATAGGAGAA+GGG | 0.620723 | 8_4:+18654786 | None:intergenic |
GTCATACCTGAAGAAAGTAC+AGG | 0.620947 | 8_4:+18654830 | None:intergenic |
GATAGACGTGAACATTCGAC+GGG | 0.622023 | 8_4:+18657242 | None:intergenic |
ATGCACAGACCAATGGAACA+AGG | 0.622555 | 8_4:-18655300 | Msa1317420:intron |
AAGCTGGAAAACACTCAACT+GGG | 0.626485 | 8_4:-18653706 | Msa1317420:CDS |
GGATAGACGTGAACATTCGA+CGG | 0.628969 | 8_4:+18657241 | None:intergenic |
GTGAGCTGAAACGTGAGAGG+AGG | 0.634017 | 8_4:-18654573 | Msa1317420:CDS |
AGCGTGAGCTGAAACGTGAG+AGG | 0.634386 | 8_4:-18654576 | Msa1317420:CDS |
ACCTGCATCCAAGCTTCAGG+AGG | 0.636392 | 8_4:+18654740 | None:intergenic |
ATGTAAACTTACAATGGCAA+CGG | 0.640249 | 8_4:+18656153 | None:intergenic |
TGACCACATCACTGGACCTG+AGG | 0.641825 | 8_4:-18654811 | Msa1317420:CDS |
ATCAACAGTGTGGATACTGA+GGG | 0.652441 | 8_4:-18655464 | Msa1317420:intron |
TCAGGAGGCAAAACTCCACA+AGG | 0.685943 | 8_4:+18654755 | None:intergenic |
GCTCCTCACCCATACATGTG+GGG | 0.694056 | 8_4:-18656387 | Msa1317420:CDS |
AAATCCTAGAGCTAATGCTG+TGG | 0.699726 | 8_4:-18653506 | Msa1317420:CDS |
TAAAATGGTGGTGCATATGG+CGG | 0.709796 | 8_4:+18656205 | None:intergenic |
TTATCTCATGGGAAACAGCG+AGG | 0.711063 | 8_4:-18657413 | Msa1317420:exon |
AATGCTGAAAGTGCTGAGCG+TGG | 0.716536 | 8_4:-18655625 | Msa1317420:CDS |
CCTCCATGTGAATAAAATGG+TGG | 0.718697 | 8_4:+18656193 | None:intergenic |
AAGCGATGGCAACACTACAG+GGG | 0.742066 | 8_4:-18655429 | Msa1317420:intron |
CTGAAAACCAGCTATCACGG+AGG | 0.802626 | 8_4:-18655600 | Msa1317420:intron |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATAGATGAAAATTAATAA+AGG | - | chr8_4:18653684-18653703 | Msa1317420:CDS | 10.0% |
!! | AATAGATGAAAATTAATAAA+GGG | - | chr8_4:18653685-18653704 | Msa1317420:CDS | 10.0% |
!!! | ATTATAAAATGTTTTAACAT+GGG | + | chr8_4:18654488-18654507 | None:intergenic | 10.0% |
!!! | CGTTATTATTTTTATATTAT+AGG | + | chr8_4:18654741-18654760 | None:intergenic | 10.0% |
!!! | TTTTTTAATTAATGATCTTA+TGG | + | chr8_4:18654842-18654861 | None:intergenic | 10.0% |
!! | ACAAAAATAAACATAAATTT+CGG | + | chr8_4:18655718-18655737 | None:intergenic | 10.0% |
!! | AATTATATTGGTAAAATATA+GGG | - | chr8_4:18655909-18655928 | Msa1317420:intron | 10.0% |
!!! | TTAATTACATTCAATTTTTT+TGG | - | chr8_4:18656780-18656799 | Msa1317420:intron | 10.0% |
!! | ACATAAAATTATTTATATCT+TGG | - | chr8_4:18657871-18657890 | Msa1317420:intron | 10.0% |
!!! | AAAAAATCTGATTTTGTTTT+AGG | - | chr8_4:18653382-18653401 | Msa1317420:three_prime_UTR | 15.0% |
!!! | AAACCATATAATTTCTTTTT+CGG | + | chr8_4:18653457-18653476 | None:intergenic | 15.0% |
!!! | AAAATTAATAAAGGGTATTT+TGG | - | chr8_4:18653693-18653712 | Msa1317420:CDS | 15.0% |
!!! | CATTATAAAATGTTTTAACA+TGG | + | chr8_4:18654489-18654508 | None:intergenic | 15.0% |
!!! | CAATTAAATCTTACTTTTTA+TGG | + | chr8_4:18654770-18654789 | None:intergenic | 15.0% |
!!! | ATGTAAATTTATTTTTACAC+TGG | - | chr8_4:18654803-18654822 | Msa1317420:CDS | 15.0% |
!!! | GAAAAATTTTAGTAGTTTAA+AGG | - | chr8_4:18654965-18654984 | Msa1317420:intron | 15.0% |
!! | TATGTACTTATGAATTATAT+TGG | - | chr8_4:18655897-18655916 | Msa1317420:intron | 15.0% |
!! | GAATTATATTGGTAAAATAT+AGG | - | chr8_4:18655908-18655927 | Msa1317420:intron | 15.0% |
!! | ATTATATTGGTAAAATATAG+GGG | - | chr8_4:18655910-18655929 | Msa1317420:intron | 15.0% |
!!! | GAAAAGTAATAAATTAGTTT+TGG | + | chr8_4:18658467-18658486 | None:intergenic | 15.0% |
!!! | TATTTTTGCAAAAAAGTTGA+AGG | - | chr8_4:18653752-18653771 | Msa1317420:intron | 20.0% |
!!! | ATTTTTGCAAAAAAGTTGAA+GGG | - | chr8_4:18653753-18653772 | Msa1317420:intron | 20.0% |
!! | TTGTCATGTTAATTATGATA+AGG | - | chr8_4:18653781-18653800 | Msa1317420:intron | 20.0% |
!!! | AGTTATTGATTGACTAATTA+AGG | - | chr8_4:18653886-18653905 | Msa1317420:intron | 20.0% |
!! | AAACCAACTCTTTAAATTAA+AGG | - | chr8_4:18654087-18654106 | Msa1317420:intron | 20.0% |
!! | CTATCTTATCAAATGATTAT+CGG | - | chr8_4:18654173-18654192 | Msa1317420:intron | 20.0% |
!! | ATTACTTTCTTGTTAATAAC+AGG | - | chr8_4:18654528-18654547 | Msa1317420:CDS | 20.0% |
!! | TAAGATTTAATTGATATGCA+CGG | - | chr8_4:18654777-18654796 | Msa1317420:CDS | 20.0% |
!! | TTGATATTTATAAACCAATG+TGG | - | chr8_4:18655055-18655074 | Msa1317420:intron | 20.0% |
!!! | AAGTTTTCATGAAAATATGT+AGG | + | chr8_4:18655133-18655152 | None:intergenic | 20.0% |
!! | TAACAAAATAAATGATCCTA+TGG | + | chr8_4:18655469-18655488 | None:intergenic | 20.0% |
!! | AAAATAAACATAAATTTCGG+CGG | + | chr8_4:18655715-18655734 | None:intergenic | 20.0% |
!!! | GCACTTTTAATTTATGAATA+TGG | - | chr8_4:18655769-18655788 | Msa1317420:intron | 20.0% |
!! | AGTATAAAAATAACCTTTGA+TGG | + | chr8_4:18655796-18655815 | None:intergenic | 20.0% |
!! | GGTTTAATGAAAAAATTGAA+AGG | - | chr8_4:18656130-18656149 | Msa1317420:intron | 20.0% |
!! | AAAAAATTGAAAGGATTTGA+CGG | - | chr8_4:18656139-18656158 | Msa1317420:intron | 20.0% |
!! | ATAAACAATAATAGTTGTTC+TGG | - | chr8_4:18656574-18656593 | Msa1317420:intron | 20.0% |
!! | TAATCAGAAATTTAAAAGCA+TGG | + | chr8_4:18656718-18656737 | None:intergenic | 20.0% |
!! | GTATTAATTACTTGAATAGA+TGG | - | chr8_4:18656853-18656872 | Msa1317420:intron | 20.0% |
!!! | TAAGATTTTAGTTCTACTAA+TGG | - | chr8_4:18657100-18657119 | Msa1317420:intron | 20.0% |
!! | AAAGAAAATATTCTCACAAA+AGG | - | chr8_4:18657676-18657695 | Msa1317420:intron | 20.0% |
!! | CTATTTAGTCAAATTATTAC+CGG | + | chr8_4:18657948-18657967 | None:intergenic | 20.0% |
!!! | TTATTACTTTTCAGTTTCTT+AGG | - | chr8_4:18658475-18658494 | Msa1317420:intron | 20.0% |
!!! | TTTTCTGTTTAGATTTGATA+GGG | - | chr8_4:18658511-18658530 | Msa1317420:intron | 20.0% |
!!! | TTAGTTTTTAGACTTTAGAA+AGG | - | chr8_4:18658578-18658597 | Msa1317420:five_prime_UTR | 20.0% |
!!! | TAGTTTTTAGACTTTAGAAA+GGG | - | chr8_4:18658579-18658598 | Msa1317420:five_prime_UTR | 20.0% |
!!! | TTTGGTTTTGTATTAACTAT+TGG | - | chr8_4:18658625-18658644 | Msa1317420:five_prime_UTR | 20.0% |
!! | TTACCATTTTCGTTCATTTA+AGG | - | chr8_4:18653163-18653182 | Msa1317420:three_prime_UTR | 25.0% |
!! | ATTTTCGTTCATTTAAGGAA+GGG | - | chr8_4:18653168-18653187 | Msa1317420:three_prime_UTR | 25.0% |
! | CATAAAAAAACAGCAATACT+CGG | + | chr8_4:18653210-18653229 | None:intergenic | 25.0% |
! | TCACCGAAAAAGAAATTATA+TGG | - | chr8_4:18653451-18653470 | Msa1317420:three_prime_UTR | 25.0% |
!!! | TAATAAAGGGTATTTTGGAT+CGG | - | chr8_4:18653698-18653717 | Msa1317420:CDS | 25.0% |
!! | AACATTAGATTTTCTTGCTA+AGG | + | chr8_4:18653942-18653961 | None:intergenic | 25.0% |
!! | ACACCTTTAATTTAAAGAGT+TGG | + | chr8_4:18654093-18654112 | None:intergenic | 25.0% |
! | ACAATAAAAAAGCAACAGAA+AGG | + | chr8_4:18654272-18654291 | None:intergenic | 25.0% |
! | ATAAAGGAAATGAAAGCAAA+AGG | + | chr8_4:18654624-18654643 | None:intergenic | 25.0% |
!!! | ATTTTAGTAGTTTAAAGGTG+TGG | - | chr8_4:18654970-18654989 | Msa1317420:intron | 25.0% |
!! | CACCAAAAGTAGTTTTTAAT+GGG | + | chr8_4:18655316-18655335 | None:intergenic | 25.0% |
!! | TCACCAAAAGTAGTTTTTAA+TGG | + | chr8_4:18655317-18655336 | None:intergenic | 25.0% |
! | AAAGTTTCTGTTATATCTTC+AGG | - | chr8_4:18655340-18655359 | Msa1317420:intron | 25.0% |
! | TTATATCTTCAGGCATATTA+TGG | - | chr8_4:18655350-18655369 | Msa1317420:intron | 25.0% |
! | TATATCTTCAGGCATATTAT+GGG | - | chr8_4:18655351-18655370 | Msa1317420:intron | 25.0% |
! | AATAGACACAGAAATATCAA+TGG | + | chr8_4:18655494-18655513 | None:intergenic | 25.0% |
! | AAATAAACATAAATTTCGGC+GGG | + | chr8_4:18655714-18655733 | None:intergenic | 25.0% |
! | AAAAAATCAAAACTTACAGC+AGG | + | chr8_4:18655969-18655988 | None:intergenic | 25.0% |
! | TCATAATTTACAGTATTCAG+TGG | + | chr8_4:18656025-18656044 | None:intergenic | 25.0% |
! | CTGAATACTGTAAATTATGA+TGG | - | chr8_4:18656025-18656044 | Msa1317420:intron | 25.0% |
! | AAAAATTGAAAGGATTTGAC+GGG | - | chr8_4:18656140-18656159 | Msa1317420:intron | 25.0% |
!! | ATTTTCATGCTTCAATTTTC+CGG | + | chr8_4:18656479-18656498 | None:intergenic | 25.0% |
! | ATTATTGTTTATCATACCAG+TGG | + | chr8_4:18656566-18656585 | None:intergenic | 25.0% |
!!! | TCAATTTTTTTGGTGTCATA+TGG | - | chr8_4:18656790-18656809 | Msa1317420:intron | 25.0% |
! | ACGTGACAATTAAAAAAACA+CGG | + | chr8_4:18657353-18657372 | None:intergenic | 25.0% |
!!! | TGAAAACAACTTCTAGAATA+TGG | - | chr8_4:18657517-18657536 | Msa1317420:intron | 25.0% |
! | TTAAGTTATTTACCCAAACA+CGG | - | chr8_4:18657626-18657645 | Msa1317420:intron | 25.0% |
!! | GTGAGAATATTTTCTTTCAA+AGG | + | chr8_4:18657673-18657692 | None:intergenic | 25.0% |
! | GATTGAAAATGCTACATTAA+AGG | - | chr8_4:18657840-18657859 | Msa1317420:intron | 25.0% |
! | TTTATATCTTGGCATTTCAT+AGG | - | chr8_4:18657882-18657901 | Msa1317420:intron | 25.0% |
!!! | AGTATAGATAATTTTGACTC+AGG | - | chr8_4:18658081-18658100 | Msa1317420:intron | 25.0% |
!! | ACAGAAGAGATAATTTTGAA+CGG | - | chr8_4:18658133-18658152 | Msa1317420:intron | 25.0% |
!!! | GTTTGTTGATTATGTAGTTT+TGG | - | chr8_4:18658358-18658377 | Msa1317420:intron | 25.0% |
!! | AAAACTGTTAGCAGTAATTT+TGG | + | chr8_4:18658399-18658418 | None:intergenic | 25.0% |
!!! | TAAATTAGTTTTGGCATTGA+TGG | + | chr8_4:18658458-18658477 | None:intergenic | 25.0% |
!! | GTTTTCTGTTTAGATTTGAT+AGG | - | chr8_4:18658510-18658529 | Msa1317420:intron | 25.0% |
! | TTTCTGTTTAGATTTGATAG+GGG | - | chr8_4:18658512-18658531 | Msa1317420:intron | 25.0% |
! | TTTGTACATTGAAGAGAATT+AGG | - | chr8_4:18658551-18658570 | Msa1317420:five_prime_UTR | 25.0% |
! | ATTGGAATCGATATATGATT+TGG | - | chr8_4:18658607-18658626 | Msa1317420:five_prime_UTR | 25.0% |
CTTCCTTAAATGAACGAAAA+TGG | + | chr8_4:18653169-18653188 | None:intergenic | 30.0% | |
! | CATTTTCGTTCATTTAAGGA+AGG | - | chr8_4:18653167-18653186 | Msa1317420:three_prime_UTR | 30.0% |
!!! | TTCCTTATTTTCTTCGAAGT+GGG | - | chr8_4:18653230-18653249 | Msa1317420:three_prime_UTR | 30.0% |
TTGAAAGAACAAAACAACGT+TGG | + | chr8_4:18653345-18653364 | None:intergenic | 30.0% | |
ACATACATAACACAAGATAC+AGG | + | chr8_4:18653546-18653565 | None:intergenic | 30.0% | |
!!! | AATAAAGGGTATTTTGGATC+GGG | - | chr8_4:18653699-18653718 | Msa1317420:CDS | 30.0% |
AAGACATCTTTGACTCTATA+AGG | - | chr8_4:18653860-18653879 | Msa1317420:intron | 30.0% | |
GATTGACTAATTAAGGTCTT+TGG | - | chr8_4:18653893-18653912 | Msa1317420:intron | 30.0% | |
TTTCTCTATAGTAGCTTACT+AGG | - | chr8_4:18653974-18653993 | Msa1317420:CDS | 30.0% | |
ATTCAACTGCACTAAACAAA+AGG | + | chr8_4:18654344-18654363 | None:intergenic | 30.0% | |
GTGCAGTTGAATAATTTCTA+AGG | - | chr8_4:18654352-18654371 | Msa1317420:intron | 30.0% | |
GAAAATCCGTTAAGATTGAA+AGG | - | chr8_4:18654425-18654444 | Msa1317420:intron | 30.0% | |
ATAACAAAAACGAAAACTCC+AGG | + | chr8_4:18654648-18654667 | None:intergenic | 30.0% | |
AGTATGGAAATCAACAAAGT+CGG | + | chr8_4:18654996-18655015 | None:intergenic | 30.0% | |
AAAGAGTAAAGTAGCTAGTA+TGG | + | chr8_4:18655012-18655031 | None:intergenic | 30.0% | |
AATGGGGGAAATTTCAAATA+AGG | + | chr8_4:18655162-18655181 | None:intergenic | 30.0% | |
ATTTGAGAGCCAATCAAAAT+GGG | + | chr8_4:18655179-18655198 | None:intergenic | 30.0% | |
AATTTGAGAGCCAATCAAAA+TGG | + | chr8_4:18655180-18655199 | None:intergenic | 30.0% | |
!! | TTTTGATTGGCTCTCAAATT+CGG | - | chr8_4:18655180-18655199 | Msa1317420:intron | 30.0% |
! | AACTGGATTTGATAATCTGT+GGG | - | chr8_4:18655221-18655240 | Msa1317420:intron | 30.0% |
ATCTATGACGTGATTTACAT+CGG | - | chr8_4:18655258-18655277 | Msa1317420:intron | 30.0% | |
TTCAAAAGTGAAAGCAATCT+GGG | + | chr8_4:18655285-18655304 | None:intergenic | 30.0% | |
TTTCAAAAGTGAAAGCAATC+TGG | + | chr8_4:18655286-18655305 | None:intergenic | 30.0% | |
! | TGCCCATTAAAAACTACTTT+TGG | - | chr8_4:18655311-18655330 | Msa1317420:intron | 30.0% |
ATGTAAACTTACAATGGCAA+CGG | + | chr8_4:18655662-18655681 | None:intergenic | 30.0% | |
AGTTTACATTCTCGCAATAT+TGG | - | chr8_4:18655673-18655692 | Msa1317420:CDS | 30.0% | |
TTATGAATATGGACCATCAA+AGG | - | chr8_4:18655780-18655799 | Msa1317420:intron | 30.0% | |
AGATAAACATTCAACCACAA+AGG | + | chr8_4:18655878-18655897 | None:intergenic | 30.0% | |
ATTCAGTGGATCAAAAGATT+CGG | + | chr8_4:18656011-18656030 | None:intergenic | 30.0% | |
!! | AAATTATGATGGATTTGACC+TGG | - | chr8_4:18656036-18656055 | Msa1317420:intron | 30.0% |
!! | AATTATGATGGATTTGACCT+GGG | - | chr8_4:18656037-18656056 | Msa1317420:intron | 30.0% |
! | TACGAGTTTGTTTCTCTATT+AGG | - | chr8_4:18656290-18656309 | Msa1317420:intron | 30.0% |
ATGATGATATATCAACAGTG+TGG | - | chr8_4:18656338-18656357 | Msa1317420:intron | 30.0% | |
!! | CTGTCTTATTTATAATGACC+CGG | - | chr8_4:18656457-18656476 | Msa1317420:intron | 30.0% |
! | TTTTCATGCTTCAATTTTCC+GGG | + | chr8_4:18656478-18656497 | None:intergenic | 30.0% |
CTGGATTACAAATATACTTC+TGG | - | chr8_4:18656593-18656612 | Msa1317420:intron | 30.0% | |
TCAATGAATTGTTGACACTA+TGG | + | chr8_4:18656638-18656657 | None:intergenic | 30.0% | |
ATCATGCATTAACAATTGGA+TGG | + | chr8_4:18656683-18656702 | None:intergenic | 30.0% | |
CCTTATCATGCATTAACAAT+TGG | + | chr8_4:18656687-18656706 | None:intergenic | 30.0% | |
CCAATTGTTAATGCATGATA+AGG | - | chr8_4:18656684-18656703 | Msa1317420:intron | 30.0% | |
GAATTATTTGATACCAAGAC+TGG | - | chr8_4:18656742-18656761 | Msa1317420:intron | 30.0% | |
!! | ATGTAATTAACTCTGAAACG+AGG | + | chr8_4:18656770-18656789 | None:intergenic | 30.0% |
CGTTATCTACTAGTAACTTA+AGG | - | chr8_4:18656831-18656850 | Msa1317420:intron | 30.0% | |
ATTACTTGAATAGATGGAGA+AGG | - | chr8_4:18656859-18656878 | Msa1317420:intron | 30.0% | |
TTACTTGAATAGATGGAGAA+GGG | - | chr8_4:18656860-18656879 | Msa1317420:intron | 30.0% | |
TGAATCACACAACAATAATG+CGG | - | chr8_4:18657158-18657177 | Msa1317420:intron | 30.0% | |
ACTGACACTAAAGTAATTCT+TGG | - | chr8_4:18657195-18657214 | Msa1317420:intron | 30.0% | |
! | TTTTATGCGTTTGTTTGGAT+TGG | - | chr8_4:18657374-18657393 | Msa1317420:CDS | 30.0% |
AATAAGCTGAAAAGAGCTTA+TGG | + | chr8_4:18657473-18657492 | None:intergenic | 30.0% | |
!! | GTTGTTTTCATAAACTATCC+TGG | + | chr8_4:18657507-18657526 | None:intergenic | 30.0% |
GAAATCGGAAATGAATGAAT+TGG | - | chr8_4:18657795-18657814 | Msa1317420:intron | 30.0% | |
GAATGAATTGGCTGAAAATT+CGG | - | chr8_4:18657807-18657826 | Msa1317420:intron | 30.0% | |
! | AGTAAGTTTTCTGTACTTAC+AGG | + | chr8_4:18658178-18658197 | None:intergenic | 30.0% |
! | TACTGCTAACAGTTTTCAAA+TGG | - | chr8_4:18658403-18658422 | Msa1317420:intron | 30.0% |
ACCTTATAGTATCTGAGAAA+AGG | - | chr8_4:18658660-18658679 | Msa1317420:five_prime_UTR | 30.0% | |
! | ACCTTTTCTCAGATACTATA+AGG | + | chr8_4:18658664-18658683 | None:intergenic | 30.0% |
AAAAAAACAGCAATACTCGG+AGG | + | chr8_4:18653207-18653226 | None:intergenic | 35.0% | |
!!! | GTTCCTTATTTTCTTCGAAG+TGG | - | chr8_4:18653229-18653248 | Msa1317420:three_prime_UTR | 35.0% |
AACCCACTTCGAAGAAAATA+AGG | + | chr8_4:18653235-18653254 | None:intergenic | 35.0% | |
!! | TATTGTACGTGACTTGTTTG+TGG | - | chr8_4:18653828-18653847 | Msa1317420:intron | 35.0% |
!! | ATTGTACGTGACTTGTTTGT+GGG | - | chr8_4:18653829-18653848 | Msa1317420:intron | 35.0% |
CATCAACACATGTCACATTT+GGG | + | chr8_4:18654117-18654136 | None:intergenic | 35.0% | |
!! | GGAAGTATTTGACTCAATCT+TGG | - | chr8_4:18654373-18654392 | Msa1317420:intron | 35.0% |
!! | AATCTTGGTGCTTATCTCAT+GGG | - | chr8_4:18654388-18654407 | Msa1317420:intron | 35.0% |
AGAAGGCCTTTCAATCTTAA+CGG | + | chr8_4:18654434-18654453 | None:intergenic | 35.0% | |
ACTATGCTTACAGTTGTTAC+AGG | + | chr8_4:18654460-18654479 | None:intergenic | 35.0% | |
AGGAAATGAAAGCAAAAGGT+TGG | + | chr8_4:18654620-18654639 | None:intergenic | 35.0% | |
GCTTTCATTTCCTTTATACC+TGG | - | chr8_4:18654627-18654646 | Msa1317420:intron | 35.0% | |
AACGAAAACTCCAGGTATAA+AGG | + | chr8_4:18654640-18654659 | None:intergenic | 35.0% | |
GTGAAGTGAAGATAGCTAAA+CGG | + | chr8_4:18654671-18654690 | None:intergenic | 35.0% | |
AGATTACTGACATTGAAGCA+CGG | + | chr8_4:18655107-18655126 | None:intergenic | 35.0% | |
!! | GAAATTTCCCCCATTTTGAT+TGG | - | chr8_4:18655167-18655186 | Msa1317420:intron | 35.0% |
TTTGAGAGCCAATCAAAATG+GGG | + | chr8_4:18655178-18655197 | None:intergenic | 35.0% | |
! | CAACTGGATTTGATAATCTG+TGG | - | chr8_4:18655220-18655239 | Msa1317420:intron | 35.0% |
! | ACTGGATTTGATAATCTGTG+GGG | - | chr8_4:18655222-18655241 | Msa1317420:intron | 35.0% |
! | ATTTGATAATCTGTGGGGAA+CGG | - | chr8_4:18655227-18655246 | Msa1317420:intron | 35.0% |
GGCTGAAAGAAACAATAAGT+TGG | + | chr8_4:18655568-18655587 | None:intergenic | 35.0% | |
! | GAATAAAATGGTGGTGCATA+TGG | + | chr8_4:18655613-18655632 | None:intergenic | 35.0% |
! | CACCATTTTATTCACATGGA+GGG | - | chr8_4:18655620-18655639 | Msa1317420:CDS | 35.0% |
! | ACCATTTTATTCACATGGAG+GGG | - | chr8_4:18655621-18655640 | Msa1317420:CDS | 35.0% |
GCGAGAATGTAAACTTACAA+TGG | + | chr8_4:18655668-18655687 | None:intergenic | 35.0% | |
CTTAATGTACCAAACCTTTG+TGG | - | chr8_4:18655861-18655880 | Msa1317420:intron | 35.0% | |
AACATTCAACCACAAAGGTT+TGG | + | chr8_4:18655873-18655892 | None:intergenic | 35.0% | |
ATATAGGGGTCGAATTCAAA+TGG | - | chr8_4:18655924-18655943 | Msa1317420:intron | 35.0% | |
!! | ATTATGATGGATTTGACCTG+GGG | - | chr8_4:18656038-18656057 | Msa1317420:intron | 35.0% |
ATCAGTGTTTCCAGATGATT+TGG | + | chr8_4:18656107-18656126 | None:intergenic | 35.0% | |
! | ATAGGAAGTGCAGTTAATTC+TGG | + | chr8_4:18656258-18656277 | None:intergenic | 35.0% |
GTTTCTCTATTAGGTTCATG+TGG | - | chr8_4:18656299-18656318 | Msa1317420:intron | 35.0% | |
TTTATCATACCAGTGGTTGT+TGG | + | chr8_4:18656559-18656578 | None:intergenic | 35.0% | |
TTTAGTGTCAGTAAAAGACG+AGG | + | chr8_4:18657187-18657206 | None:intergenic | 35.0% | |
! | ACGTGTTTTATGCGTTTGTT+TGG | - | chr8_4:18657369-18657388 | Msa1317420:CDS | 35.0% |
TAAACACATGTGAGACTGTT+CGG | - | chr8_4:18657417-18657436 | Msa1317420:exon | 35.0% | |
GAGCATATAGAAACAGCTTA+TGG | - | chr8_4:18657442-18657461 | Msa1317420:five_prime_UTR | 35.0% | |
TATAGAAACAGCTTATGGCA+TGG | - | chr8_4:18657447-18657466 | Msa1317420:five_prime_UTR | 35.0% | |
ATTTCATAGGCTACAAAGCA+TGG | - | chr8_4:18657895-18657914 | Msa1317420:intron | 35.0% | |
!!! | AATTTTGACTCAGGAAAAGC+TGG | - | chr8_4:18658090-18658109 | Msa1317420:intron | 35.0% |
TTGAAAACCAGTATTTGCAC+TGG | - | chr8_4:18658336-18658355 | Msa1317420:intron | 35.0% | |
! | GCTAACAGTTTTCAAATGGA+TGG | - | chr8_4:18658407-18658426 | Msa1317420:intron | 35.0% |
! | GGATGGATCAGTTGAATTTT+AGG | - | chr8_4:18658424-18658443 | Msa1317420:intron | 35.0% |
! | ACTTTAGAAAGGGTTGTGAT+TGG | - | chr8_4:18658589-18658608 | Msa1317420:five_prime_UTR | 35.0% |
GTTGTTGTCGTGTATCTTTC+AGG | - | chr8_4:18653288-18653307 | Msa1317420:three_prime_UTR | 40.0% | |
!! | TTGTACGTGACTTGTTTGTG+GGG | - | chr8_4:18653830-18653849 | Msa1317420:intron | 40.0% |
CCATCAACACATGTCACATT+TGG | + | chr8_4:18654118-18654137 | None:intergenic | 40.0% | |
CCAAATGTGACATGTGTTGA+TGG | - | chr8_4:18654115-18654134 | Msa1317420:intron | 40.0% | |
!! | CAATCTTGGTGCTTATCTCA+TGG | - | chr8_4:18654387-18654406 | Msa1317420:intron | 40.0% |
ACAGTTGTTACAGGTGAAGA+AGG | + | chr8_4:18654451-18654470 | None:intergenic | 40.0% | |
ATGTTCACGTCTATCCTGAT+TGG | - | chr8_4:18654578-18654597 | Msa1317420:CDS | 40.0% | |
TGTTCACGTCTATCCTGATT+GGG | - | chr8_4:18654579-18654598 | Msa1317420:CDS | 40.0% | |
! | TCGTAAAAGCGCACAAATGA+TGG | - | chr8_4:18654883-18654902 | Msa1317420:CDS | 40.0% |
TTGAGAGCCAATCAAAATGG+GGG | + | chr8_4:18655177-18655196 | None:intergenic | 40.0% | |
ATAGTGTCACAACTTGCAAC+TGG | - | chr8_4:18655204-18655223 | Msa1317420:intron | 40.0% | |
ATTATTCATCCCTTCGAGCA+AGG | + | chr8_4:18655542-18655561 | None:intergenic | 40.0% | |
AGCCTATGATGCATCCATAT+GGG | - | chr8_4:18655584-18655603 | Msa1317420:intron | 40.0% | |
! | TAAAATGGTGGTGCATATGG+CGG | + | chr8_4:18655610-18655629 | None:intergenic | 40.0% |
! | GCACCACCATTTTATTCACA+TGG | - | chr8_4:18655616-18655635 | Msa1317420:CDS | 40.0% |
CCTCCATGTGAATAAAATGG+TGG | + | chr8_4:18655622-18655641 | None:intergenic | 40.0% | |
! | CCACCATTTTATTCACATGG+AGG | - | chr8_4:18655619-18655638 | Msa1317420:CDS | 40.0% |
ACCCCTCCATGTGAATAAAA+TGG | + | chr8_4:18655625-18655644 | None:intergenic | 40.0% | |
AAACTTACAGCAGGTGAAGA+TGG | + | chr8_4:18655960-18655979 | None:intergenic | 40.0% | |
!! | TTATGATGGATTTGACCTGG+GGG | - | chr8_4:18656039-18656058 | Msa1317420:intron | 40.0% |
!! | GTGTTTCCAGATGATTTGGT+TGG | + | chr8_4:18656103-18656122 | None:intergenic | 40.0% |
ATCATCTGGAAACACTGATC+AGG | - | chr8_4:18656108-18656127 | Msa1317420:intron | 40.0% | |
TCATCTGGAAACACTGATCA+GGG | - | chr8_4:18656109-18656128 | Msa1317420:intron | 40.0% | |
CTTGCAATGTCAATAGGCAA+TGG | - | chr8_4:18656163-18656182 | Msa1317420:intron | 40.0% | |
AGAAACAAACTCGTACAGCA+AGG | + | chr8_4:18656285-18656304 | None:intergenic | 40.0% | |
TATCAACAGTGTGGATACTG+AGG | - | chr8_4:18656347-18656366 | Msa1317420:intron | 40.0% | |
ATCAACAGTGTGGATACTGA+GGG | - | chr8_4:18656348-18656367 | Msa1317420:intron | 40.0% | |
! | CTACAGGGGTGAGAAATTTT+TGG | - | chr8_4:18656397-18656416 | Msa1317420:CDS | 40.0% |
! | GCTTCTTTTCCTTGTTCCAT+TGG | + | chr8_4:18656524-18656543 | None:intergenic | 40.0% |
ATGGAACAAGGAAAAGAAGC+CGG | - | chr8_4:18656524-18656543 | Msa1317420:intron | 40.0% | |
! | GATAACTGACACCGTCTTTT+TGG | + | chr8_4:18656932-18656951 | None:intergenic | 40.0% |
AACCAGTGCTGCAGAAAAAA+TGG | - | chr8_4:18656954-18656973 | Msa1317420:intron | 40.0% | |
!!! | AACCATTTTTTCTGCAGCAC+TGG | + | chr8_4:18656959-18656978 | None:intergenic | 40.0% |
AGTGCTGCAGAAAAAATGGT+TGG | - | chr8_4:18656958-18656977 | Msa1317420:intron | 40.0% | |
! | GTCATACCTGAAGAAAGTAC+AGG | + | chr8_4:18656985-18657004 | None:intergenic | 40.0% |
CACTAGTGGAAATAGGAGAA+GGG | + | chr8_4:18657029-18657048 | None:intergenic | 40.0% | |
AAACTATCCTGGTGAGCTTA+TGG | + | chr8_4:18657496-18657515 | None:intergenic | 40.0% | |
!! | TGCATTGACTGCTGAGAATT+TGG | - | chr8_4:18657768-18657787 | Msa1317420:intron | 40.0% |
! | TGAGAATTTGGCGCTGAAAT+CGG | - | chr8_4:18657780-18657799 | Msa1317420:intron | 40.0% |
TACAAATGTCAATGTCGTGC+TGG | - | chr8_4:18657984-18658003 | Msa1317420:intron | 40.0% | |
!!! | TTTTGAACGGCATTGACAAG+AGG | - | chr8_4:18658146-18658165 | Msa1317420:intron | 40.0% |
!! | TTTGAACGGCATTGACAAGA+GGG | - | chr8_4:18658147-18658166 | Msa1317420:intron | 40.0% |
TGTGAGAGCAAACCAAATTC+TGG | - | chr8_4:18658256-18658275 | Msa1317420:intron | 40.0% | |
AAATCCTAGAGCTAATGCTG+TGG | - | chr8_4:18658306-18658325 | Msa1317420:intron | 40.0% | |
CAACAAACCAGTGCAAATAC+TGG | + | chr8_4:18658346-18658365 | None:intergenic | 40.0% | |
ATGAAGCAGCGACACAGATA+TGG | + | chr8_4:18654223-18654242 | None:intergenic | 45.0% | |
TTATCTCATGGGAAACAGCG+AGG | - | chr8_4:18654399-18654418 | Msa1317420:intron | 45.0% | |
GATAGACGTGAACATTCGAC+GGG | + | chr8_4:18654573-18654592 | None:intergenic | 45.0% | |
GGATAGACGTGAACATTCGA+CGG | + | chr8_4:18654574-18654593 | None:intergenic | 45.0% | |
!! | CAAAAGGTTGGTAACCTGCA+TGG | + | chr8_4:18654608-18654627 | None:intergenic | 45.0% |
CGATGAAGACAACTCCACAT+TGG | + | chr8_4:18655072-18655091 | None:intergenic | 45.0% | |
! | GCAGCTGAGTTGAAATATGG+TGG | + | chr8_4:18655392-18655411 | None:intergenic | 45.0% |
! | GCAGCAGCTGAGTTGAAATA+TGG | + | chr8_4:18655395-18655414 | None:intergenic | 45.0% |
TTCGAGCAAGGATGTACACA+AGG | + | chr8_4:18655530-18655549 | None:intergenic | 45.0% | |
TTGTGTACATCCTTGCTCGA+AGG | - | chr8_4:18655529-18655548 | Msa1317420:intron | 45.0% | |
TGTGTACATCCTTGCTCGAA+GGG | - | chr8_4:18655530-18655549 | Msa1317420:intron | 45.0% | |
CAGCCTATGATGCATCCATA+TGG | - | chr8_4:18655583-18655602 | Msa1317420:intron | 45.0% | |
AAACTTACAATGGCAACGGC+AGG | + | chr8_4:18655658-18655677 | None:intergenic | 45.0% | |
GGGTCGAATTCAAATGGTCA+AGG | - | chr8_4:18655930-18655949 | Msa1317420:intron | 45.0% | |
!! | TATGATGGATTTGACCTGGG+GGG | - | chr8_4:18656040-18656059 | Msa1317420:intron | 45.0% |
! | GTTGGTGTCTCTATGCTTGT+AGG | + | chr8_4:18656085-18656104 | None:intergenic | 45.0% |
GAGACACCAACCAAATCATC+TGG | - | chr8_4:18656094-18656113 | Msa1317420:intron | 45.0% | |
GAGCTGAAAACCAGCTATCA+CGG | - | chr8_4:18656209-18656228 | Msa1317420:CDS | 45.0% | |
! | ATCACGGAGGTTTGTTCAGT+AGG | - | chr8_4:18656225-18656244 | Msa1317420:CDS | 45.0% |
GACTACTAGTGTACGCAACT+GGG | + | chr8_4:18656438-18656457 | None:intergenic | 45.0% | |
AGACTACTAGTGTACGCAAC+TGG | + | chr8_4:18656439-18656458 | None:intergenic | 45.0% | |
! | CATTGGTCTGTGCATAGCAT+TGG | + | chr8_4:18656507-18656526 | None:intergenic | 45.0% |
CAATGCTATGCACAGACCAA+TGG | - | chr8_4:18656505-18656524 | Msa1317420:intron | 45.0% | |
ATGCACAGACCAATGGAACA+AGG | - | chr8_4:18656512-18656531 | Msa1317420:intron | 45.0% | |
TGGAACAAGGAAAAGAAGCC+GGG | - | chr8_4:18656525-18656544 | Msa1317420:intron | 45.0% | |
TTTGGAAGCAGCAGTCTCTT+TGG | + | chr8_4:18656914-18656933 | None:intergenic | 45.0% | |
! | GACTGCTGCTTCCAAAAAGA+CGG | - | chr8_4:18656918-18656937 | Msa1317420:intron | 45.0% |
GTTGGACCTGTACTTTCTTC+AGG | - | chr8_4:18656976-18656995 | Msa1317420:intron | 45.0% | |
TTCAGGTATGACCACATCAC+TGG | - | chr8_4:18656993-18657012 | Msa1317420:intron | 45.0% | |
AAATAGGAGAAGGGTTCCTC+AGG | + | chr8_4:18657020-18657039 | None:intergenic | 45.0% | |
GCACTAGTGGAAATAGGAGA+AGG | + | chr8_4:18657030-18657049 | None:intergenic | 45.0% | |
! | TGTGGAGCACTAGTGGAAAT+AGG | + | chr8_4:18657036-18657055 | None:intergenic | 45.0% |
TTCAGCTCACGCTCATTCTA+AGG | + | chr8_4:18657229-18657248 | None:intergenic | 45.0% | |
GTGAATCTGCAAGAAGATCC+AGG | - | chr8_4:18657275-18657294 | Msa1317420:intron | 45.0% | |
GCTTATTCCATAAGCTCACC+AGG | - | chr8_4:18657486-18657505 | Msa1317420:intron | 45.0% | |
GGCTACATGTACATGCATCA+GGG | + | chr8_4:18657652-18657671 | None:intergenic | 45.0% | |
AGGCTACATGTACATGCATC+AGG | + | chr8_4:18657653-18657672 | None:intergenic | 45.0% | |
CGTTCTTATCTCCTCTGTAC+AGG | - | chr8_4:18657714-18657733 | Msa1317420:intron | 45.0% | |
TAGGCTACAAAGCATGGACA+CGG | - | chr8_4:18657901-18657920 | Msa1317420:intron | 45.0% | |
ACTGGATACGACATTGACAC+CGG | - | chr8_4:18657926-18657945 | Msa1317420:intron | 45.0% | |
GCAGCGATGCTTCATATTGA+AGG | + | chr8_4:18658031-18658050 | None:intergenic | 45.0% | |
TGCAGCTCTATCATCAGGAT+TGG | + | chr8_4:18658218-18658237 | None:intergenic | 45.0% | |
AGAGCTGCAGAGGAAGAAAA+TGG | - | chr8_4:18658229-18658248 | Msa1317420:intron | 45.0% | |
!! | ATTCGACGGGTTGGCTTGAT+TGG | + | chr8_4:18654560-18654579 | None:intergenic | 50.0% |
!! | AATCTGTGGGGAACGGACTA+TGG | - | chr8_4:18655234-18655253 | Msa1317420:intron | 50.0% |
ATGCTCCTCACCCATACATG+TGG | - | chr8_4:18655423-18655442 | Msa1317420:intron | 50.0% | |
TGCTCCTCACCCATACATGT+GGG | - | chr8_4:18655424-18655443 | Msa1317420:intron | 50.0% | |
! | ATCCTATGGAGCACTACCTG+TGG | + | chr8_4:18655455-18655474 | None:intergenic | 50.0% |
GCAAGGATGTACACAAGGAC+AGG | + | chr8_4:18655525-18655544 | None:intergenic | 50.0% | |
GGCCCATATGGATGCATCAT+AGG | + | chr8_4:18655589-18655608 | None:intergenic | 50.0% | |
! | GACGGGCTTGCAATGTCAAT+AGG | - | chr8_4:18656157-18656176 | Msa1317420:intron | 50.0% |
!! | AATGCTGAAAGTGCTGAGCG+TGG | - | chr8_4:18656187-18656206 | Msa1317420:CDS | 50.0% |
CTGAAAACCAGCTATCACGG+AGG | - | chr8_4:18656212-18656231 | Msa1317420:CDS | 50.0% | |
GAACAAACCTCCGTGATAGC+TGG | + | chr8_4:18656222-18656241 | None:intergenic | 50.0% | |
CTCGTACAGCAAGGAGACAT+AGG | + | chr8_4:18656276-18656295 | None:intergenic | 50.0% | |
GAAGCGATGGCAACACTACA+GGG | - | chr8_4:18656382-18656401 | Msa1317420:CDS | 50.0% | |
AAGCGATGGCAACACTACAG+GGG | - | chr8_4:18656383-18656402 | Msa1317420:CDS | 50.0% | |
ACAAGGAAAAGAAGCCGGGA+TGG | - | chr8_4:18656529-18656548 | Msa1317420:intron | 50.0% | |
CAAGGAAAAGAAGCCGGGAT+GGG | - | chr8_4:18656530-18656549 | Msa1317420:intron | 50.0% | |
! | ACAAGGTTGTGGAGCACTAG+TGG | + | chr8_4:18657043-18657062 | None:intergenic | 50.0% |
ACTAGTGCTCCACAACCTTG+TGG | - | chr8_4:18657042-18657061 | Msa1317420:intron | 50.0% | |
GGCAAAACTCCACAAGGTTG+TGG | + | chr8_4:18657054-18657073 | None:intergenic | 50.0% | |
TCAGGAGGCAAAACTCCACA+AGG | + | chr8_4:18657060-18657079 | None:intergenic | 50.0% | |
! | GAGTTTTGCCTCCTGAAGCT+TGG | - | chr8_4:18657064-18657083 | Msa1317420:intron | 50.0% |
AGTACCTGCATCCAAGCTTC+AGG | + | chr8_4:18657078-18657097 | None:intergenic | 50.0% | |
CTGCAAGAAGATCCAGGCTT+AGG | - | chr8_4:18657281-18657300 | Msa1317420:intron | 50.0% | |
AAGATCCAGGCTTAGGAAGC+AGG | - | chr8_4:18657288-18657307 | Msa1317420:intron | 50.0% | |
TCATACCTGCTTCCTAAGCC+TGG | + | chr8_4:18657296-18657315 | None:intergenic | 50.0% | |
TCGTGCCAATTCTTCAGCCT+CGG | + | chr8_4:18657740-18657759 | None:intergenic | 50.0% | |
! | CTGGTGTCAGACACATGACA+TGG | - | chr8_4:18658003-18658022 | Msa1317420:intron | 50.0% |
TCCTGATGATAGAGCTGCAG+AGG | - | chr8_4:18658219-18658238 | Msa1317420:intron | 50.0% | |
TCCTCTGCAGCTCTATCATC+AGG | + | chr8_4:18658223-18658242 | None:intergenic | 50.0% | |
CGCAGCTTTGCACCAGAATT+TGG | + | chr8_4:18658271-18658290 | None:intergenic | 50.0% | |
CTCATGGGAAACAGCGAGGA+TGG | - | chr8_4:18654403-18654422 | Msa1317420:intron | 55.0% | |
GACGTGAACATTCGACGGGT+TGG | + | chr8_4:18654569-18654588 | None:intergenic | 55.0% | |
TTCAACTCAGCTGCTGCTCC+TGG | - | chr8_4:18655398-18655417 | Msa1317420:intron | 55.0% | |
! | TATGGGTGAGGAGCATGACC+AGG | + | chr8_4:18655419-18655438 | None:intergenic | 55.0% |
GCTCCTCACCCATACATGTG+GGG | - | chr8_4:18655425-18655444 | Msa1317420:intron | 55.0% | |
GTGGTGGTCCCCACATGTAT+GGG | + | chr8_4:18655436-18655455 | None:intergenic | 55.0% | |
TGTGGTGGTCCCCACATGTA+TGG | + | chr8_4:18655437-18655456 | None:intergenic | 55.0% | |
ATACATGTGGGGACCACCAC+AGG | - | chr8_4:18655436-18655455 | Msa1317420:CDS | 55.0% | |
! | CTATGGAGCACTACCTGTGG+TGG | + | chr8_4:18655452-18655471 | None:intergenic | 55.0% |
CACCACAGGTAGTGCTCCAT+AGG | - | chr8_4:18655450-18655469 | Msa1317420:CDS | 55.0% | |
GATACTGAGGGTTCCAGCGA+TGG | - | chr8_4:18656360-18656379 | Msa1317420:intron | 55.0% | |
GGAAGCGATGGCAACACTAC+AGG | - | chr8_4:18656381-18656400 | Msa1317420:CDS | 55.0% | |
! | TGGTTGTTGGTGTCCCATCC+CGG | + | chr8_4:18656546-18656565 | None:intergenic | 55.0% |
GATGGGACACCAACAACCAC+TGG | - | chr8_4:18656547-18656566 | Msa1317420:intron | 55.0% | |
! | CTGAAACGAGGTGCCAGTCT+TGG | + | chr8_4:18656758-18656777 | None:intergenic | 55.0% |
TGACCACATCACTGGACCTG+AGG | - | chr8_4:18657001-18657020 | Msa1317420:intron | 55.0% | |
GTTCCTCAGGTCCAGTGATG+TGG | + | chr8_4:18657007-18657026 | None:intergenic | 55.0% | |
ACCTGCATCCAAGCTTCAGG+AGG | + | chr8_4:18657075-18657094 | None:intergenic | 55.0% | |
AGCGTGAGCTGAAACGTGAG+AGG | - | chr8_4:18657236-18657255 | Msa1317420:CDS | 55.0% | |
GTGAGCTGAAACGTGAGAGG+AGG | - | chr8_4:18657239-18657258 | Msa1317420:CDS | 55.0% | |
CATGCATCAGGGCCGTGTTT+GGG | + | chr8_4:18657641-18657660 | None:intergenic | 55.0% | |
ACATGCATCAGGGCCGTGTT+TGG | + | chr8_4:18657642-18657661 | None:intergenic | 55.0% | |
TATCTCCTCTGTACAGGCCG+AGG | - | chr8_4:18657720-18657739 | Msa1317420:intron | 55.0% | |
ACAGGCCGAGGCTGAAGAAT+TGG | - | chr8_4:18657732-18657751 | Msa1317420:intron | 55.0% | |
CAAAGCATGGACACGGACAC+TGG | - | chr8_4:18657908-18657927 | Msa1317420:intron | 55.0% | |
! | GCTGCCACAGCATTAGCTCT+AGG | + | chr8_4:18658313-18658332 | None:intergenic | 55.0% |
TCCTGATTGGGCTGCCATGC+AGG | - | chr8_4:18654591-18654610 | Msa1317420:intron | 60.0% | |
ACCTGCATGGCAGCCCAATC+AGG | + | chr8_4:18654595-18654614 | None:intergenic | 60.0% | |
GGTCCCCACATGTATGGGTG+AGG | + | chr8_4:18655431-18655450 | None:intergenic | 60.0% | |
GGTGCATATGGCGGCCCATA+TGG | + | chr8_4:18655601-18655620 | None:intergenic | 60.0% | |
TGACCTGGGGGGAACTATGC+AGG | - | chr8_4:18656051-18656070 | Msa1317420:intron | 60.0% | |
TGGGGGGAACTATGCAGGCT+GGG | - | chr8_4:18656056-18656075 | Msa1317420:intron | 60.0% | |
GGTTCCAGCGATGGAAGCGA+TGG | - | chr8_4:18656369-18656388 | Msa1317420:intron | 60.0% | |
GTTGCCATCGCTTCCATCGC+TGG | + | chr8_4:18656376-18656395 | None:intergenic | 60.0% | |
GCCTCCTGAAGCTTGGATGC+AGG | - | chr8_4:18657071-18657090 | Msa1317420:intron | 60.0% | |
TTCAGCCTCGGCCTGTACAG+AGG | + | chr8_4:18657728-18657747 | None:intergenic | 60.0% | |
CAGCCTGCATAGTTCCCCCC+AGG | + | chr8_4:18656057-18656076 | None:intergenic | 65.0% | |
CTGGGGGGAACTATGCAGGC+TGG | - | chr8_4:18656055-18656074 | Msa1317420:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_4 | gene | 18653120 | 18658714 | 18653120 | ID=Msa1317420;Name=Msa1317420 |
chr8_4 | mRNA | 18653120 | 18658714 | 18653120 | ID=Msa1317420-mRNA-1;Parent=Msa1317420;Name=Msa1317420-mRNA-1;_AED=0.17;_eAED=0.17;_QI=243|1|1|1|0.91|0.84|13|375|422 |
chr8_4 | exon | 18653120 | 18653731 | 18653120 | ID=Msa1317420-mRNA-1:exon:6928;Parent=Msa1317420-mRNA-1 |
chr8_4 | exon | 18653973 | 18654098 | 18653973 | ID=Msa1317420-mRNA-1:exon:6927;Parent=Msa1317420-mRNA-1 |
chr8_4 | exon | 18654525 | 18654602 | 18654525 | ID=Msa1317420-mRNA-1:exon:6926;Parent=Msa1317420-mRNA-1 |
chr8_4 | exon | 18654742 | 18654962 | 18654742 | ID=Msa1317420-mRNA-1:exon:6925;Parent=Msa1317420-mRNA-1 |
chr8_4 | exon | 18655266 | 18655314 | 18655266 | ID=Msa1317420-mRNA-1:exon:6924;Parent=Msa1317420-mRNA-1 |
chr8_4 | exon | 18655430 | 18655478 | 18655430 | ID=Msa1317420-mRNA-1:exon:6923;Parent=Msa1317420-mRNA-1 |
chr8_4 | exon | 18655601 | 18655761 | 18655601 | ID=Msa1317420-mRNA-1:exon:6922;Parent=Msa1317420-mRNA-1 |
chr8_4 | exon | 18655863 | 18655904 | 18655863 | ID=Msa1317420-mRNA-1:exon:6921;Parent=Msa1317420-mRNA-1 |
chr8_4 | exon | 18656165 | 18656248 | 18656165 | ID=Msa1317420-mRNA-1:exon:6920;Parent=Msa1317420-mRNA-1 |
chr8_4 | exon | 18656377 | 18656472 | 18656377 | ID=Msa1317420-mRNA-1:exon:6919;Parent=Msa1317420-mRNA-1 |
chr8_4 | exon | 18657222 | 18657284 | 18657222 | ID=Msa1317420-mRNA-1:exon:6918;Parent=Msa1317420-mRNA-1 |
chr8_4 | exon | 18657366 | 18657481 | 18657366 | ID=Msa1317420-mRNA-1:exon:6917;Parent=Msa1317420-mRNA-1 |
chr8_4 | exon | 18658525 | 18658714 | 18658525 | ID=Msa1317420-mRNA-1:exon:6916;Parent=Msa1317420-mRNA-1 |
chr8_4 | five_prime_UTR | 18658525 | 18658714 | 18658525 | ID=Msa1317420-mRNA-1:five_prime_utr;Parent=Msa1317420-mRNA-1 |
chr8_4 | five_prime_UTR | 18657429 | 18657481 | 18657429 | ID=Msa1317420-mRNA-1:five_prime_utr;Parent=Msa1317420-mRNA-1 |
chr8_4 | CDS | 18657366 | 18657428 | 18657366 | ID=Msa1317420-mRNA-1:cds;Parent=Msa1317420-mRNA-1 |
chr8_4 | CDS | 18657222 | 18657284 | 18657222 | ID=Msa1317420-mRNA-1:cds;Parent=Msa1317420-mRNA-1 |
chr8_4 | CDS | 18656377 | 18656472 | 18656377 | ID=Msa1317420-mRNA-1:cds;Parent=Msa1317420-mRNA-1 |
chr8_4 | CDS | 18656165 | 18656248 | 18656165 | ID=Msa1317420-mRNA-1:cds;Parent=Msa1317420-mRNA-1 |
chr8_4 | CDS | 18655863 | 18655904 | 18655863 | ID=Msa1317420-mRNA-1:cds;Parent=Msa1317420-mRNA-1 |
chr8_4 | CDS | 18655601 | 18655761 | 18655601 | ID=Msa1317420-mRNA-1:cds;Parent=Msa1317420-mRNA-1 |
chr8_4 | CDS | 18655430 | 18655478 | 18655430 | ID=Msa1317420-mRNA-1:cds;Parent=Msa1317420-mRNA-1 |
chr8_4 | CDS | 18655266 | 18655314 | 18655266 | ID=Msa1317420-mRNA-1:cds;Parent=Msa1317420-mRNA-1 |
chr8_4 | CDS | 18654742 | 18654962 | 18654742 | ID=Msa1317420-mRNA-1:cds;Parent=Msa1317420-mRNA-1 |
chr8_4 | CDS | 18654525 | 18654602 | 18654525 | ID=Msa1317420-mRNA-1:cds;Parent=Msa1317420-mRNA-1 |
chr8_4 | CDS | 18653973 | 18654098 | 18653973 | ID=Msa1317420-mRNA-1:cds;Parent=Msa1317420-mRNA-1 |
chr8_4 | CDS | 18653495 | 18653731 | 18653495 | ID=Msa1317420-mRNA-1:cds;Parent=Msa1317420-mRNA-1 |
chr8_4 | three_prime_UTR | 18653120 | 18653494 | 18653120 | ID=Msa1317420-mRNA-1:three_prime_utr;Parent=Msa1317420-mRNA-1 |
Gene Sequence |
Protein sequence |