AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1317420


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1317420 MtrunA17_Chr8g0347741 95.735 422 18 0 1 422 1 422 0.0 832
Msa1317420 MtrunA17_Chr7g0275321 70.629 429 113 7 1 421 1 424 0.0 588
Msa1317420 MtrunA17_Chr5g0410531 35.492 386 199 15 1 347 1 375 4.85e-47 166
Msa1317420 MtrunA17_Chr8g0369161 33.498 406 197 16 1 354 1 385 1.82e-41 151
Msa1317420 MtrunA17_Chr8g0373571 35.376 359 190 11 1 348 1 328 3.65e-39 143
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1317420 AT2G46270.1 52.927 427 149 16 1 421 1 381 1.13e-118 351
Msa1317420 AT2G46270.3 52.927 427 149 16 1 421 1 381 1.13e-118 351
Msa1317420 AT2G46270.2 51.054 427 134 15 1 421 1 358 1.49e-108 324
Msa1317420 AT2G46270.4 51.054 427 134 15 1 421 1 358 1.49e-108 324
Msa1317420 AT4G01120.1 43.529 425 172 14 1 422 1 360 1.79e-83 260
Msa1317420 AT2G35530.1 35.897 351 166 17 36 347 42 372 9.67e-40 147
Msa1317420 AT4G36730.2 34.857 350 164 14 1 348 1 288 4.81e-36 135
Msa1317420 AT1G32150.1 36.104 385 185 18 1 347 1 362 1.68e-35 135
Msa1317420 AT4G36730.1 34.000 350 169 14 1 348 1 290 1.47e-34 130
Msa1317420 AT5G15830.1 40.566 106 58 3 272 375 67 169 5.79e-11 62.0

Find 131 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAAACTGTTAGCAGTAATTT+TGG 0.154999 8_4:+18653416 None:intergenic
CGCAGCTTTGCACCAGAATT+TGG 0.174496 8_4:+18653544 None:intergenic
TTATATCTTCAGGCATATTA+TGG 0.179056 8_4:-18656462 Msa1317420:intron
TGCATTGACTGCTGAGAATT+TGG 0.206598 8_4:-18654044 Msa1317420:CDS
GTTGTTGTCGTGTATCTTTC+AGG 0.247217 8_4:-18658524 Msa1317420:intron
TTTGTACATTGAAGAGAATT+AGG 0.276493 8_4:-18653261 Msa1317420:three_prime_UTR
GTTGGTGTCTCTATGCTTGT+AGG 0.281246 8_4:+18655730 None:intergenic
GAAAAGTAATAAATTAGTTT+TGG 0.291757 8_4:+18653348 None:intergenic
GTTGGACCTGTACTTTCTTC+AGG 0.296175 8_4:-18654836 Msa1317420:CDS
GATTGAAAATGCTACATTAA+AGG 0.302646 8_4:-18653972 Msa1317420:intron
GTTTGTTGATTATGTAGTTT+TGG 0.309343 8_4:-18653454 Msa1317420:three_prime_UTR
ACCCCTCCATGTGAATAAAA+TGG 0.310681 8_4:+18656190 None:intergenic
CTTCCTTAAATGAACGAAAA+TGG 0.313058 8_4:+18658646 None:intergenic
TTTGGAAGCAGCAGTCTCTT+TGG 0.315745 8_4:+18654901 None:intergenic
GTGCAGTTGAATAATTTCTA+AGG 0.328604 8_4:-18657460 Msa1317420:five_prime_UTR
ATTCGACGGGTTGGCTTGAT+TGG 0.332587 8_4:+18657255 None:intergenic
TGTGAGAGCAAACCAAATTC+TGG 0.337122 8_4:-18653556 Msa1317420:CDS
GAATGAATTGGCTGAAAATT+CGG 0.342200 8_4:-18654005 Msa1317420:CDS
AACCCACTTCGAAGAAAATA+AGG 0.344516 8_4:+18658580 None:intergenic
ATCAGTGTTTCCAGATGATT+TGG 0.348179 8_4:+18655708 None:intergenic
ACTATGCTTACAGTTGTTAC+AGG 0.353749 8_4:+18657355 None:intergenic
AAAGCTGGAAAACACTCAAC+TGG 0.369633 8_4:-18653707 Msa1317420:CDS
TCCTGATTGGGCTGCCATGC+AGG 0.378974 8_4:-18657221 Msa1317420:intron
TGTGGAGCACTAGTGGAAAT+AGG 0.386291 8_4:+18654779 None:intergenic
TATATCTTCAGGCATATTAT+GGG 0.390466 8_4:-18656461 Msa1317420:intron
TGTGGTGGTCCCCACATGTA+TGG 0.390846 8_4:+18656378 None:intergenic
GGAAGTATTTGACTCAATCT+TGG 0.394614 8_4:-18657439 Msa1317420:five_prime_UTR
AGAGCTGCAGAGGAAGAAAA+TGG 0.398971 8_4:-18653583 Msa1317420:CDS
GCAGCAGCTGAGTTGAAATA+TGG 0.399898 8_4:+18656420 None:intergenic
TCCTCTGCAGCTCTATCATC+AGG 0.402104 8_4:+18653592 None:intergenic
CAGCCTATGATGCATCCATA+TGG 0.403301 8_4:-18656229 Msa1317420:CDS
TGAGAATTTGGCGCTGAAAT+CGG 0.404953 8_4:-18654032 Msa1317420:CDS
ACTTTAGAAAGGGTTGTGAT+TGG 0.406895 8_4:-18653223 Msa1317420:three_prime_UTR
ATTGGAATCGATATATGATT+TGG 0.411970 8_4:-18653205 Msa1317420:three_prime_UTR
ACAGGCCGAGGCTGAAGAAT+TGG 0.415387 8_4:-18654080 Msa1317420:intron
ACCTGCATGGCAGCCCAATC+AGG 0.417831 8_4:+18657220 None:intergenic
GGTGCATATGGCGGCCCATA+TGG 0.422943 8_4:+18656214 None:intergenic
GCCTCCTGAAGCTTGGATGC+AGG 0.426706 8_4:-18654741 Msa1317420:intron
GACGGGCTTGCAATGTCAAT+AGG 0.426918 8_4:-18655655 Msa1317420:CDS
CAACAAACCAGTGCAAATAC+TGG 0.433037 8_4:+18653469 None:intergenic
ATCATCTGGAAACACTGATC+AGG 0.436322 8_4:-18655704 Msa1317420:CDS
GTTGCCATCGCTTCCATCGC+TGG 0.439957 8_4:+18655439 None:intergenic
AGAAGGCCTTTCAATCTTAA+CGG 0.439968 8_4:+18657381 None:intergenic
AAGATCCAGGCTTAGGAAGC+AGG 0.440032 8_4:-18654524 Msa1317420:intron
GAGACACCAACCAAATCATC+TGG 0.448010 8_4:-18655718 Msa1317420:CDS
ATGTTCACGTCTATCCTGAT+TGG 0.449162 8_4:-18657234 Msa1317420:CDS
TTCAACTCAGCTGCTGCTCC+TGG 0.457412 8_4:-18656414 Msa1317420:CDS
TGTTCACGTCTATCCTGATT+GGG 0.463031 8_4:-18657233 Msa1317420:CDS
GGCCCATATGGATGCATCAT+AGG 0.470629 8_4:+18656226 None:intergenic
GAAATCGGAAATGAATGAAT+TGG 0.472002 8_4:-18654017 Msa1317420:CDS
TTCAGGTATGACCACATCAC+TGG 0.473232 8_4:-18654819 Msa1317420:CDS
AAACTTACAGCAGGTGAAGA+TGG 0.476285 8_4:+18655855 None:intergenic
CAATCTTGGTGCTTATCTCA+TGG 0.479255 8_4:-18657425 Msa1317420:exon
GGCAAAACTCCACAAGGTTG+TGG 0.479999 8_4:+18654761 None:intergenic
GGAAGCGATGGCAACACTAC+AGG 0.486034 8_4:-18655431 Msa1317420:CDS
TCATACCTGCTTCCTAAGCC+TGG 0.486648 8_4:+18654519 None:intergenic
GAATAAAATGGTGGTGCATA+TGG 0.490133 8_4:+18656202 None:intergenic
AGTACCTGCATCCAAGCTTC+AGG 0.494330 8_4:+18654737 None:intergenic
CTGCAAGAAGATCCAGGCTT+AGG 0.497217 8_4:-18654531 Msa1317420:CDS
TGGTTGTTGGTGTCCCATCC+CGG 0.497265 8_4:+18655269 None:intergenic
TTTATCATACCAGTGGTTGT+TGG 0.502643 8_4:+18655256 None:intergenic
ATATAGGGGTCGAATTCAAA+TGG 0.506926 8_4:-18655888 Msa1317420:intron
ACCTTATAGTATCTGAGAAA+AGG 0.515621 8_4:-18653152 Msa1317420:three_prime_UTR
GACGTGAACATTCGACGGGT+TGG 0.516747 8_4:+18657246 None:intergenic
TGGAACAAGGAAAAGAAGCC+GGG 0.517217 8_4:-18655287 Msa1317420:CDS
TCGTGCCAATTCTTCAGCCT+CGG 0.521120 8_4:+18654075 None:intergenic
TGCAGCTCTATCATCAGGAT+TGG 0.521412 8_4:+18653597 None:intergenic
ATTACTTGAATAGATGGAGA+AGG 0.522234 8_4:-18654953 Msa1317420:intron
ACAGTTGTTACAGGTGAAGA+AGG 0.523511 8_4:+18657364 None:intergenic
AGCCTATGATGCATCCATAT+GGG 0.523891 8_4:-18656228 Msa1317420:CDS
ATACATGTGGGGACCACCAC+AGG 0.528881 8_4:-18656376 Msa1317420:intron
TTACTTGAATAGATGGAGAA+GGG 0.530286 8_4:-18654952 Msa1317420:intron
CTCATGGGAAACAGCGAGGA+TGG 0.530777 8_4:-18657409 Msa1317420:CDS
AATCTTGGTGCTTATCTCAT+GGG 0.533227 8_4:-18657424 Msa1317420:exon
GAACAAACCTCCGTGATAGC+TGG 0.533419 8_4:+18655593 None:intergenic
ATGGAACAAGGAAAAGAAGC+CGG 0.533912 8_4:-18655288 Msa1317420:CDS
ACAAGGTTGTGGAGCACTAG+TGG 0.537578 8_4:+18654772 None:intergenic
GAAAATCCGTTAAGATTGAA+AGG 0.538090 8_4:-18657387 Msa1317420:CDS
GTGAATCTGCAAGAAGATCC+AGG 0.538433 8_4:-18654537 Msa1317420:CDS
TTGAAAACCAGTATTTGCAC+TGG 0.541531 8_4:-18653476 Msa1317420:exon
GCTGCCACAGCATTAGCTCT+AGG 0.543381 8_4:+18653502 None:intergenic
AAATAGGAGAAGGGTTCCTC+AGG 0.546191 8_4:+18654795 None:intergenic
TGCTCCTCACCCATACATGT+GGG 0.547429 8_4:-18656388 Msa1317420:CDS
GATACTGAGGGTTCCAGCGA+TGG 0.548274 8_4:-18655452 Msa1317420:CDS
CAAGGAAAAGAAGCCGGGAT+GGG 0.549908 8_4:-18655282 Msa1317420:CDS
TCATCTGGAAACACTGATCA+GGG 0.569446 8_4:-18655703 Msa1317420:CDS
GAAGCGATGGCAACACTACA+GGG 0.570248 8_4:-18655430 Msa1317420:CDS
GAGCTGAAAACCAGCTATCA+CGG 0.570429 8_4:-18655603 Msa1317420:CDS
GCACTAGTGGAAATAGGAGA+AGG 0.571583 8_4:+18654785 None:intergenic
TTTGAACGGCATTGACAAGA+GGG 0.571991 8_4:-18653665 Msa1317420:CDS
ACAAGGAAAAGAAGCCGGGA+TGG 0.577909 8_4:-18655283 Msa1317420:CDS
TATGGGTGAGGAGCATGACC+AGG 0.581544 8_4:+18656396 None:intergenic
GGTTCCAGCGATGGAAGCGA+TGG 0.582155 8_4:-18655443 Msa1317420:CDS
TTTCTGTTTAGATTTGATAG+GGG 0.582214 8_4:-18653300 Msa1317420:three_prime_UTR
TCCTGATGATAGAGCTGCAG+AGG 0.584828 8_4:-18653593 Msa1317420:CDS
ACTAGTGCTCCACAACCTTG+TGG 0.584842 8_4:-18654770 Msa1317420:CDS
GATGGGACACCAACAACCAC+TGG 0.585041 8_4:-18655265 Msa1317420:intron
GGTCCCCACATGTATGGGTG+AGG 0.585719 8_4:+18656384 None:intergenic
ATGCTCCTCACCCATACATG+TGG 0.594125 8_4:-18656389 Msa1317420:CDS
CAAAAGGTTGGTAACCTGCA+TGG 0.594851 8_4:+18657207 None:intergenic
GTGTTTCCAGATGATTTGGT+TGG 0.595146 8_4:+18655712 None:intergenic
GGGTCGAATTCAAATGGTCA+AGG 0.595761 8_4:-18655882 Msa1317420:CDS
GTTCCTCAGGTCCAGTGATG+TGG 0.595870 8_4:+18654808 None:intergenic
CTATGGAGCACTACCTGTGG+TGG 0.596426 8_4:+18656363 None:intergenic
CTTGCAATGTCAATAGGCAA+TGG 0.600080 8_4:-18655649 Msa1317420:CDS
AAACTTACAATGGCAACGGC+AGG 0.601671 8_4:+18656157 None:intergenic
GTGGTGGTCCCCACATGTAT+GGG 0.604143 8_4:+18656379 None:intergenic
GCAGCTGAGTTGAAATATGG+TGG 0.615300 8_4:+18656423 None:intergenic
CAATGCTATGCACAGACCAA+TGG 0.615349 8_4:-18655307 Msa1317420:intron
TATCAACAGTGTGGATACTG+AGG 0.618321 8_4:-18655465 Msa1317420:intron
CACTAGTGGAAATAGGAGAA+GGG 0.620723 8_4:+18654786 None:intergenic
GTCATACCTGAAGAAAGTAC+AGG 0.620947 8_4:+18654830 None:intergenic
GATAGACGTGAACATTCGAC+GGG 0.622023 8_4:+18657242 None:intergenic
ATGCACAGACCAATGGAACA+AGG 0.622555 8_4:-18655300 Msa1317420:intron
AAGCTGGAAAACACTCAACT+GGG 0.626485 8_4:-18653706 Msa1317420:CDS
GGATAGACGTGAACATTCGA+CGG 0.628969 8_4:+18657241 None:intergenic
GTGAGCTGAAACGTGAGAGG+AGG 0.634017 8_4:-18654573 Msa1317420:CDS
AGCGTGAGCTGAAACGTGAG+AGG 0.634386 8_4:-18654576 Msa1317420:CDS
ACCTGCATCCAAGCTTCAGG+AGG 0.636392 8_4:+18654740 None:intergenic
ATGTAAACTTACAATGGCAA+CGG 0.640249 8_4:+18656153 None:intergenic
TGACCACATCACTGGACCTG+AGG 0.641825 8_4:-18654811 Msa1317420:CDS
ATCAACAGTGTGGATACTGA+GGG 0.652441 8_4:-18655464 Msa1317420:intron
TCAGGAGGCAAAACTCCACA+AGG 0.685943 8_4:+18654755 None:intergenic
GCTCCTCACCCATACATGTG+GGG 0.694056 8_4:-18656387 Msa1317420:CDS
AAATCCTAGAGCTAATGCTG+TGG 0.699726 8_4:-18653506 Msa1317420:CDS
TAAAATGGTGGTGCATATGG+CGG 0.709796 8_4:+18656205 None:intergenic
TTATCTCATGGGAAACAGCG+AGG 0.711063 8_4:-18657413 Msa1317420:exon
AATGCTGAAAGTGCTGAGCG+TGG 0.716536 8_4:-18655625 Msa1317420:CDS
CCTCCATGTGAATAAAATGG+TGG 0.718697 8_4:+18656193 None:intergenic
AAGCGATGGCAACACTACAG+GGG 0.742066 8_4:-18655429 Msa1317420:intron
CTGAAAACCAGCTATCACGG+AGG 0.802626 8_4:-18655600 Msa1317420:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAATAGATGAAAATTAATAA+AGG - chr8_4:18653684-18653703 Msa1317420:CDS 10.0%
!! AATAGATGAAAATTAATAAA+GGG - chr8_4:18653685-18653704 Msa1317420:CDS 10.0%
!!! ATTATAAAATGTTTTAACAT+GGG + chr8_4:18654488-18654507 None:intergenic 10.0%
!!! CGTTATTATTTTTATATTAT+AGG + chr8_4:18654741-18654760 None:intergenic 10.0%
!!! TTTTTTAATTAATGATCTTA+TGG + chr8_4:18654842-18654861 None:intergenic 10.0%
!! ACAAAAATAAACATAAATTT+CGG + chr8_4:18655718-18655737 None:intergenic 10.0%
!! AATTATATTGGTAAAATATA+GGG - chr8_4:18655909-18655928 Msa1317420:intron 10.0%
!!! TTAATTACATTCAATTTTTT+TGG - chr8_4:18656780-18656799 Msa1317420:intron 10.0%
!! ACATAAAATTATTTATATCT+TGG - chr8_4:18657871-18657890 Msa1317420:intron 10.0%
!!! AAAAAATCTGATTTTGTTTT+AGG - chr8_4:18653382-18653401 Msa1317420:three_prime_UTR 15.0%
!!! AAACCATATAATTTCTTTTT+CGG + chr8_4:18653457-18653476 None:intergenic 15.0%
!!! AAAATTAATAAAGGGTATTT+TGG - chr8_4:18653693-18653712 Msa1317420:CDS 15.0%
!!! CATTATAAAATGTTTTAACA+TGG + chr8_4:18654489-18654508 None:intergenic 15.0%
!!! CAATTAAATCTTACTTTTTA+TGG + chr8_4:18654770-18654789 None:intergenic 15.0%
!!! ATGTAAATTTATTTTTACAC+TGG - chr8_4:18654803-18654822 Msa1317420:CDS 15.0%
!!! GAAAAATTTTAGTAGTTTAA+AGG - chr8_4:18654965-18654984 Msa1317420:intron 15.0%
!! TATGTACTTATGAATTATAT+TGG - chr8_4:18655897-18655916 Msa1317420:intron 15.0%
!! GAATTATATTGGTAAAATAT+AGG - chr8_4:18655908-18655927 Msa1317420:intron 15.0%
!! ATTATATTGGTAAAATATAG+GGG - chr8_4:18655910-18655929 Msa1317420:intron 15.0%
!!! GAAAAGTAATAAATTAGTTT+TGG + chr8_4:18658467-18658486 None:intergenic 15.0%
!!! TATTTTTGCAAAAAAGTTGA+AGG - chr8_4:18653752-18653771 Msa1317420:intron 20.0%
!!! ATTTTTGCAAAAAAGTTGAA+GGG - chr8_4:18653753-18653772 Msa1317420:intron 20.0%
!! TTGTCATGTTAATTATGATA+AGG - chr8_4:18653781-18653800 Msa1317420:intron 20.0%
!!! AGTTATTGATTGACTAATTA+AGG - chr8_4:18653886-18653905 Msa1317420:intron 20.0%
!! AAACCAACTCTTTAAATTAA+AGG - chr8_4:18654087-18654106 Msa1317420:intron 20.0%
!! CTATCTTATCAAATGATTAT+CGG - chr8_4:18654173-18654192 Msa1317420:intron 20.0%
!! ATTACTTTCTTGTTAATAAC+AGG - chr8_4:18654528-18654547 Msa1317420:CDS 20.0%
!! TAAGATTTAATTGATATGCA+CGG - chr8_4:18654777-18654796 Msa1317420:CDS 20.0%
!! TTGATATTTATAAACCAATG+TGG - chr8_4:18655055-18655074 Msa1317420:intron 20.0%
!!! AAGTTTTCATGAAAATATGT+AGG + chr8_4:18655133-18655152 None:intergenic 20.0%
!! TAACAAAATAAATGATCCTA+TGG + chr8_4:18655469-18655488 None:intergenic 20.0%
!! AAAATAAACATAAATTTCGG+CGG + chr8_4:18655715-18655734 None:intergenic 20.0%
!!! GCACTTTTAATTTATGAATA+TGG - chr8_4:18655769-18655788 Msa1317420:intron 20.0%
!! AGTATAAAAATAACCTTTGA+TGG + chr8_4:18655796-18655815 None:intergenic 20.0%
!! GGTTTAATGAAAAAATTGAA+AGG - chr8_4:18656130-18656149 Msa1317420:intron 20.0%
!! AAAAAATTGAAAGGATTTGA+CGG - chr8_4:18656139-18656158 Msa1317420:intron 20.0%
!! ATAAACAATAATAGTTGTTC+TGG - chr8_4:18656574-18656593 Msa1317420:intron 20.0%
!! TAATCAGAAATTTAAAAGCA+TGG + chr8_4:18656718-18656737 None:intergenic 20.0%
!! GTATTAATTACTTGAATAGA+TGG - chr8_4:18656853-18656872 Msa1317420:intron 20.0%
!!! TAAGATTTTAGTTCTACTAA+TGG - chr8_4:18657100-18657119 Msa1317420:intron 20.0%
!! AAAGAAAATATTCTCACAAA+AGG - chr8_4:18657676-18657695 Msa1317420:intron 20.0%
!! CTATTTAGTCAAATTATTAC+CGG + chr8_4:18657948-18657967 None:intergenic 20.0%
!!! TTATTACTTTTCAGTTTCTT+AGG - chr8_4:18658475-18658494 Msa1317420:intron 20.0%
!!! TTTTCTGTTTAGATTTGATA+GGG - chr8_4:18658511-18658530 Msa1317420:intron 20.0%
!!! TTAGTTTTTAGACTTTAGAA+AGG - chr8_4:18658578-18658597 Msa1317420:five_prime_UTR 20.0%
!!! TAGTTTTTAGACTTTAGAAA+GGG - chr8_4:18658579-18658598 Msa1317420:five_prime_UTR 20.0%
!!! TTTGGTTTTGTATTAACTAT+TGG - chr8_4:18658625-18658644 Msa1317420:five_prime_UTR 20.0%
!! TTACCATTTTCGTTCATTTA+AGG - chr8_4:18653163-18653182 Msa1317420:three_prime_UTR 25.0%
!! ATTTTCGTTCATTTAAGGAA+GGG - chr8_4:18653168-18653187 Msa1317420:three_prime_UTR 25.0%
! CATAAAAAAACAGCAATACT+CGG + chr8_4:18653210-18653229 None:intergenic 25.0%
! TCACCGAAAAAGAAATTATA+TGG - chr8_4:18653451-18653470 Msa1317420:three_prime_UTR 25.0%
!!! TAATAAAGGGTATTTTGGAT+CGG - chr8_4:18653698-18653717 Msa1317420:CDS 25.0%
!! AACATTAGATTTTCTTGCTA+AGG + chr8_4:18653942-18653961 None:intergenic 25.0%
!! ACACCTTTAATTTAAAGAGT+TGG + chr8_4:18654093-18654112 None:intergenic 25.0%
! ACAATAAAAAAGCAACAGAA+AGG + chr8_4:18654272-18654291 None:intergenic 25.0%
! ATAAAGGAAATGAAAGCAAA+AGG + chr8_4:18654624-18654643 None:intergenic 25.0%
!!! ATTTTAGTAGTTTAAAGGTG+TGG - chr8_4:18654970-18654989 Msa1317420:intron 25.0%
!! CACCAAAAGTAGTTTTTAAT+GGG + chr8_4:18655316-18655335 None:intergenic 25.0%
!! TCACCAAAAGTAGTTTTTAA+TGG + chr8_4:18655317-18655336 None:intergenic 25.0%
! AAAGTTTCTGTTATATCTTC+AGG - chr8_4:18655340-18655359 Msa1317420:intron 25.0%
! TTATATCTTCAGGCATATTA+TGG - chr8_4:18655350-18655369 Msa1317420:intron 25.0%
! TATATCTTCAGGCATATTAT+GGG - chr8_4:18655351-18655370 Msa1317420:intron 25.0%
! AATAGACACAGAAATATCAA+TGG + chr8_4:18655494-18655513 None:intergenic 25.0%
! AAATAAACATAAATTTCGGC+GGG + chr8_4:18655714-18655733 None:intergenic 25.0%
! AAAAAATCAAAACTTACAGC+AGG + chr8_4:18655969-18655988 None:intergenic 25.0%
! TCATAATTTACAGTATTCAG+TGG + chr8_4:18656025-18656044 None:intergenic 25.0%
! CTGAATACTGTAAATTATGA+TGG - chr8_4:18656025-18656044 Msa1317420:intron 25.0%
! AAAAATTGAAAGGATTTGAC+GGG - chr8_4:18656140-18656159 Msa1317420:intron 25.0%
!! ATTTTCATGCTTCAATTTTC+CGG + chr8_4:18656479-18656498 None:intergenic 25.0%
! ATTATTGTTTATCATACCAG+TGG + chr8_4:18656566-18656585 None:intergenic 25.0%
!!! TCAATTTTTTTGGTGTCATA+TGG - chr8_4:18656790-18656809 Msa1317420:intron 25.0%
! ACGTGACAATTAAAAAAACA+CGG + chr8_4:18657353-18657372 None:intergenic 25.0%
!!! TGAAAACAACTTCTAGAATA+TGG - chr8_4:18657517-18657536 Msa1317420:intron 25.0%
! TTAAGTTATTTACCCAAACA+CGG - chr8_4:18657626-18657645 Msa1317420:intron 25.0%
!! GTGAGAATATTTTCTTTCAA+AGG + chr8_4:18657673-18657692 None:intergenic 25.0%
! GATTGAAAATGCTACATTAA+AGG - chr8_4:18657840-18657859 Msa1317420:intron 25.0%
! TTTATATCTTGGCATTTCAT+AGG - chr8_4:18657882-18657901 Msa1317420:intron 25.0%
!!! AGTATAGATAATTTTGACTC+AGG - chr8_4:18658081-18658100 Msa1317420:intron 25.0%
!! ACAGAAGAGATAATTTTGAA+CGG - chr8_4:18658133-18658152 Msa1317420:intron 25.0%
!!! GTTTGTTGATTATGTAGTTT+TGG - chr8_4:18658358-18658377 Msa1317420:intron 25.0%
!! AAAACTGTTAGCAGTAATTT+TGG + chr8_4:18658399-18658418 None:intergenic 25.0%
!!! TAAATTAGTTTTGGCATTGA+TGG + chr8_4:18658458-18658477 None:intergenic 25.0%
!! GTTTTCTGTTTAGATTTGAT+AGG - chr8_4:18658510-18658529 Msa1317420:intron 25.0%
! TTTCTGTTTAGATTTGATAG+GGG - chr8_4:18658512-18658531 Msa1317420:intron 25.0%
! TTTGTACATTGAAGAGAATT+AGG - chr8_4:18658551-18658570 Msa1317420:five_prime_UTR 25.0%
! ATTGGAATCGATATATGATT+TGG - chr8_4:18658607-18658626 Msa1317420:five_prime_UTR 25.0%
CTTCCTTAAATGAACGAAAA+TGG + chr8_4:18653169-18653188 None:intergenic 30.0%
! CATTTTCGTTCATTTAAGGA+AGG - chr8_4:18653167-18653186 Msa1317420:three_prime_UTR 30.0%
!!! TTCCTTATTTTCTTCGAAGT+GGG - chr8_4:18653230-18653249 Msa1317420:three_prime_UTR 30.0%
TTGAAAGAACAAAACAACGT+TGG + chr8_4:18653345-18653364 None:intergenic 30.0%
ACATACATAACACAAGATAC+AGG + chr8_4:18653546-18653565 None:intergenic 30.0%
!!! AATAAAGGGTATTTTGGATC+GGG - chr8_4:18653699-18653718 Msa1317420:CDS 30.0%
AAGACATCTTTGACTCTATA+AGG - chr8_4:18653860-18653879 Msa1317420:intron 30.0%
GATTGACTAATTAAGGTCTT+TGG - chr8_4:18653893-18653912 Msa1317420:intron 30.0%
TTTCTCTATAGTAGCTTACT+AGG - chr8_4:18653974-18653993 Msa1317420:CDS 30.0%
ATTCAACTGCACTAAACAAA+AGG + chr8_4:18654344-18654363 None:intergenic 30.0%
GTGCAGTTGAATAATTTCTA+AGG - chr8_4:18654352-18654371 Msa1317420:intron 30.0%
GAAAATCCGTTAAGATTGAA+AGG - chr8_4:18654425-18654444 Msa1317420:intron 30.0%
ATAACAAAAACGAAAACTCC+AGG + chr8_4:18654648-18654667 None:intergenic 30.0%
AGTATGGAAATCAACAAAGT+CGG + chr8_4:18654996-18655015 None:intergenic 30.0%
AAAGAGTAAAGTAGCTAGTA+TGG + chr8_4:18655012-18655031 None:intergenic 30.0%
AATGGGGGAAATTTCAAATA+AGG + chr8_4:18655162-18655181 None:intergenic 30.0%
ATTTGAGAGCCAATCAAAAT+GGG + chr8_4:18655179-18655198 None:intergenic 30.0%
AATTTGAGAGCCAATCAAAA+TGG + chr8_4:18655180-18655199 None:intergenic 30.0%
!! TTTTGATTGGCTCTCAAATT+CGG - chr8_4:18655180-18655199 Msa1317420:intron 30.0%
! AACTGGATTTGATAATCTGT+GGG - chr8_4:18655221-18655240 Msa1317420:intron 30.0%
ATCTATGACGTGATTTACAT+CGG - chr8_4:18655258-18655277 Msa1317420:intron 30.0%
TTCAAAAGTGAAAGCAATCT+GGG + chr8_4:18655285-18655304 None:intergenic 30.0%
TTTCAAAAGTGAAAGCAATC+TGG + chr8_4:18655286-18655305 None:intergenic 30.0%
! TGCCCATTAAAAACTACTTT+TGG - chr8_4:18655311-18655330 Msa1317420:intron 30.0%
ATGTAAACTTACAATGGCAA+CGG + chr8_4:18655662-18655681 None:intergenic 30.0%
AGTTTACATTCTCGCAATAT+TGG - chr8_4:18655673-18655692 Msa1317420:CDS 30.0%
TTATGAATATGGACCATCAA+AGG - chr8_4:18655780-18655799 Msa1317420:intron 30.0%
AGATAAACATTCAACCACAA+AGG + chr8_4:18655878-18655897 None:intergenic 30.0%
ATTCAGTGGATCAAAAGATT+CGG + chr8_4:18656011-18656030 None:intergenic 30.0%
!! AAATTATGATGGATTTGACC+TGG - chr8_4:18656036-18656055 Msa1317420:intron 30.0%
!! AATTATGATGGATTTGACCT+GGG - chr8_4:18656037-18656056 Msa1317420:intron 30.0%
! TACGAGTTTGTTTCTCTATT+AGG - chr8_4:18656290-18656309 Msa1317420:intron 30.0%
ATGATGATATATCAACAGTG+TGG - chr8_4:18656338-18656357 Msa1317420:intron 30.0%
!! CTGTCTTATTTATAATGACC+CGG - chr8_4:18656457-18656476 Msa1317420:intron 30.0%
! TTTTCATGCTTCAATTTTCC+GGG + chr8_4:18656478-18656497 None:intergenic 30.0%
CTGGATTACAAATATACTTC+TGG - chr8_4:18656593-18656612 Msa1317420:intron 30.0%
TCAATGAATTGTTGACACTA+TGG + chr8_4:18656638-18656657 None:intergenic 30.0%
ATCATGCATTAACAATTGGA+TGG + chr8_4:18656683-18656702 None:intergenic 30.0%
CCTTATCATGCATTAACAAT+TGG + chr8_4:18656687-18656706 None:intergenic 30.0%
CCAATTGTTAATGCATGATA+AGG - chr8_4:18656684-18656703 Msa1317420:intron 30.0%
GAATTATTTGATACCAAGAC+TGG - chr8_4:18656742-18656761 Msa1317420:intron 30.0%
!! ATGTAATTAACTCTGAAACG+AGG + chr8_4:18656770-18656789 None:intergenic 30.0%
CGTTATCTACTAGTAACTTA+AGG - chr8_4:18656831-18656850 Msa1317420:intron 30.0%
ATTACTTGAATAGATGGAGA+AGG - chr8_4:18656859-18656878 Msa1317420:intron 30.0%
TTACTTGAATAGATGGAGAA+GGG - chr8_4:18656860-18656879 Msa1317420:intron 30.0%
TGAATCACACAACAATAATG+CGG - chr8_4:18657158-18657177 Msa1317420:intron 30.0%
ACTGACACTAAAGTAATTCT+TGG - chr8_4:18657195-18657214 Msa1317420:intron 30.0%
! TTTTATGCGTTTGTTTGGAT+TGG - chr8_4:18657374-18657393 Msa1317420:CDS 30.0%
AATAAGCTGAAAAGAGCTTA+TGG + chr8_4:18657473-18657492 None:intergenic 30.0%
!! GTTGTTTTCATAAACTATCC+TGG + chr8_4:18657507-18657526 None:intergenic 30.0%
GAAATCGGAAATGAATGAAT+TGG - chr8_4:18657795-18657814 Msa1317420:intron 30.0%
GAATGAATTGGCTGAAAATT+CGG - chr8_4:18657807-18657826 Msa1317420:intron 30.0%
! AGTAAGTTTTCTGTACTTAC+AGG + chr8_4:18658178-18658197 None:intergenic 30.0%
! TACTGCTAACAGTTTTCAAA+TGG - chr8_4:18658403-18658422 Msa1317420:intron 30.0%
ACCTTATAGTATCTGAGAAA+AGG - chr8_4:18658660-18658679 Msa1317420:five_prime_UTR 30.0%
! ACCTTTTCTCAGATACTATA+AGG + chr8_4:18658664-18658683 None:intergenic 30.0%
AAAAAAACAGCAATACTCGG+AGG + chr8_4:18653207-18653226 None:intergenic 35.0%
!!! GTTCCTTATTTTCTTCGAAG+TGG - chr8_4:18653229-18653248 Msa1317420:three_prime_UTR 35.0%
AACCCACTTCGAAGAAAATA+AGG + chr8_4:18653235-18653254 None:intergenic 35.0%
!! TATTGTACGTGACTTGTTTG+TGG - chr8_4:18653828-18653847 Msa1317420:intron 35.0%
!! ATTGTACGTGACTTGTTTGT+GGG - chr8_4:18653829-18653848 Msa1317420:intron 35.0%
CATCAACACATGTCACATTT+GGG + chr8_4:18654117-18654136 None:intergenic 35.0%
!! GGAAGTATTTGACTCAATCT+TGG - chr8_4:18654373-18654392 Msa1317420:intron 35.0%
!! AATCTTGGTGCTTATCTCAT+GGG - chr8_4:18654388-18654407 Msa1317420:intron 35.0%
AGAAGGCCTTTCAATCTTAA+CGG + chr8_4:18654434-18654453 None:intergenic 35.0%
ACTATGCTTACAGTTGTTAC+AGG + chr8_4:18654460-18654479 None:intergenic 35.0%
AGGAAATGAAAGCAAAAGGT+TGG + chr8_4:18654620-18654639 None:intergenic 35.0%
GCTTTCATTTCCTTTATACC+TGG - chr8_4:18654627-18654646 Msa1317420:intron 35.0%
AACGAAAACTCCAGGTATAA+AGG + chr8_4:18654640-18654659 None:intergenic 35.0%
GTGAAGTGAAGATAGCTAAA+CGG + chr8_4:18654671-18654690 None:intergenic 35.0%
AGATTACTGACATTGAAGCA+CGG + chr8_4:18655107-18655126 None:intergenic 35.0%
!! GAAATTTCCCCCATTTTGAT+TGG - chr8_4:18655167-18655186 Msa1317420:intron 35.0%
TTTGAGAGCCAATCAAAATG+GGG + chr8_4:18655178-18655197 None:intergenic 35.0%
! CAACTGGATTTGATAATCTG+TGG - chr8_4:18655220-18655239 Msa1317420:intron 35.0%
! ACTGGATTTGATAATCTGTG+GGG - chr8_4:18655222-18655241 Msa1317420:intron 35.0%
! ATTTGATAATCTGTGGGGAA+CGG - chr8_4:18655227-18655246 Msa1317420:intron 35.0%
GGCTGAAAGAAACAATAAGT+TGG + chr8_4:18655568-18655587 None:intergenic 35.0%
! GAATAAAATGGTGGTGCATA+TGG + chr8_4:18655613-18655632 None:intergenic 35.0%
! CACCATTTTATTCACATGGA+GGG - chr8_4:18655620-18655639 Msa1317420:CDS 35.0%
! ACCATTTTATTCACATGGAG+GGG - chr8_4:18655621-18655640 Msa1317420:CDS 35.0%
GCGAGAATGTAAACTTACAA+TGG + chr8_4:18655668-18655687 None:intergenic 35.0%
CTTAATGTACCAAACCTTTG+TGG - chr8_4:18655861-18655880 Msa1317420:intron 35.0%
AACATTCAACCACAAAGGTT+TGG + chr8_4:18655873-18655892 None:intergenic 35.0%
ATATAGGGGTCGAATTCAAA+TGG - chr8_4:18655924-18655943 Msa1317420:intron 35.0%
!! ATTATGATGGATTTGACCTG+GGG - chr8_4:18656038-18656057 Msa1317420:intron 35.0%
ATCAGTGTTTCCAGATGATT+TGG + chr8_4:18656107-18656126 None:intergenic 35.0%
! ATAGGAAGTGCAGTTAATTC+TGG + chr8_4:18656258-18656277 None:intergenic 35.0%
GTTTCTCTATTAGGTTCATG+TGG - chr8_4:18656299-18656318 Msa1317420:intron 35.0%
TTTATCATACCAGTGGTTGT+TGG + chr8_4:18656559-18656578 None:intergenic 35.0%
TTTAGTGTCAGTAAAAGACG+AGG + chr8_4:18657187-18657206 None:intergenic 35.0%
! ACGTGTTTTATGCGTTTGTT+TGG - chr8_4:18657369-18657388 Msa1317420:CDS 35.0%
TAAACACATGTGAGACTGTT+CGG - chr8_4:18657417-18657436 Msa1317420:exon 35.0%
GAGCATATAGAAACAGCTTA+TGG - chr8_4:18657442-18657461 Msa1317420:five_prime_UTR 35.0%
TATAGAAACAGCTTATGGCA+TGG - chr8_4:18657447-18657466 Msa1317420:five_prime_UTR 35.0%
ATTTCATAGGCTACAAAGCA+TGG - chr8_4:18657895-18657914 Msa1317420:intron 35.0%
!!! AATTTTGACTCAGGAAAAGC+TGG - chr8_4:18658090-18658109 Msa1317420:intron 35.0%
TTGAAAACCAGTATTTGCAC+TGG - chr8_4:18658336-18658355 Msa1317420:intron 35.0%
! GCTAACAGTTTTCAAATGGA+TGG - chr8_4:18658407-18658426 Msa1317420:intron 35.0%
! GGATGGATCAGTTGAATTTT+AGG - chr8_4:18658424-18658443 Msa1317420:intron 35.0%
! ACTTTAGAAAGGGTTGTGAT+TGG - chr8_4:18658589-18658608 Msa1317420:five_prime_UTR 35.0%
GTTGTTGTCGTGTATCTTTC+AGG - chr8_4:18653288-18653307 Msa1317420:three_prime_UTR 40.0%
!! TTGTACGTGACTTGTTTGTG+GGG - chr8_4:18653830-18653849 Msa1317420:intron 40.0%
CCATCAACACATGTCACATT+TGG + chr8_4:18654118-18654137 None:intergenic 40.0%
CCAAATGTGACATGTGTTGA+TGG - chr8_4:18654115-18654134 Msa1317420:intron 40.0%
!! CAATCTTGGTGCTTATCTCA+TGG - chr8_4:18654387-18654406 Msa1317420:intron 40.0%
ACAGTTGTTACAGGTGAAGA+AGG + chr8_4:18654451-18654470 None:intergenic 40.0%
ATGTTCACGTCTATCCTGAT+TGG - chr8_4:18654578-18654597 Msa1317420:CDS 40.0%
TGTTCACGTCTATCCTGATT+GGG - chr8_4:18654579-18654598 Msa1317420:CDS 40.0%
! TCGTAAAAGCGCACAAATGA+TGG - chr8_4:18654883-18654902 Msa1317420:CDS 40.0%
TTGAGAGCCAATCAAAATGG+GGG + chr8_4:18655177-18655196 None:intergenic 40.0%
ATAGTGTCACAACTTGCAAC+TGG - chr8_4:18655204-18655223 Msa1317420:intron 40.0%
ATTATTCATCCCTTCGAGCA+AGG + chr8_4:18655542-18655561 None:intergenic 40.0%
AGCCTATGATGCATCCATAT+GGG - chr8_4:18655584-18655603 Msa1317420:intron 40.0%
! TAAAATGGTGGTGCATATGG+CGG + chr8_4:18655610-18655629 None:intergenic 40.0%
! GCACCACCATTTTATTCACA+TGG - chr8_4:18655616-18655635 Msa1317420:CDS 40.0%
CCTCCATGTGAATAAAATGG+TGG + chr8_4:18655622-18655641 None:intergenic 40.0%
! CCACCATTTTATTCACATGG+AGG - chr8_4:18655619-18655638 Msa1317420:CDS 40.0%
ACCCCTCCATGTGAATAAAA+TGG + chr8_4:18655625-18655644 None:intergenic 40.0%
AAACTTACAGCAGGTGAAGA+TGG + chr8_4:18655960-18655979 None:intergenic 40.0%
!! TTATGATGGATTTGACCTGG+GGG - chr8_4:18656039-18656058 Msa1317420:intron 40.0%
!! GTGTTTCCAGATGATTTGGT+TGG + chr8_4:18656103-18656122 None:intergenic 40.0%
ATCATCTGGAAACACTGATC+AGG - chr8_4:18656108-18656127 Msa1317420:intron 40.0%
TCATCTGGAAACACTGATCA+GGG - chr8_4:18656109-18656128 Msa1317420:intron 40.0%
CTTGCAATGTCAATAGGCAA+TGG - chr8_4:18656163-18656182 Msa1317420:intron 40.0%
AGAAACAAACTCGTACAGCA+AGG + chr8_4:18656285-18656304 None:intergenic 40.0%
TATCAACAGTGTGGATACTG+AGG - chr8_4:18656347-18656366 Msa1317420:intron 40.0%
ATCAACAGTGTGGATACTGA+GGG - chr8_4:18656348-18656367 Msa1317420:intron 40.0%
! CTACAGGGGTGAGAAATTTT+TGG - chr8_4:18656397-18656416 Msa1317420:CDS 40.0%
! GCTTCTTTTCCTTGTTCCAT+TGG + chr8_4:18656524-18656543 None:intergenic 40.0%
ATGGAACAAGGAAAAGAAGC+CGG - chr8_4:18656524-18656543 Msa1317420:intron 40.0%
! GATAACTGACACCGTCTTTT+TGG + chr8_4:18656932-18656951 None:intergenic 40.0%
AACCAGTGCTGCAGAAAAAA+TGG - chr8_4:18656954-18656973 Msa1317420:intron 40.0%
!!! AACCATTTTTTCTGCAGCAC+TGG + chr8_4:18656959-18656978 None:intergenic 40.0%
AGTGCTGCAGAAAAAATGGT+TGG - chr8_4:18656958-18656977 Msa1317420:intron 40.0%
! GTCATACCTGAAGAAAGTAC+AGG + chr8_4:18656985-18657004 None:intergenic 40.0%
CACTAGTGGAAATAGGAGAA+GGG + chr8_4:18657029-18657048 None:intergenic 40.0%
AAACTATCCTGGTGAGCTTA+TGG + chr8_4:18657496-18657515 None:intergenic 40.0%
!! TGCATTGACTGCTGAGAATT+TGG - chr8_4:18657768-18657787 Msa1317420:intron 40.0%
! TGAGAATTTGGCGCTGAAAT+CGG - chr8_4:18657780-18657799 Msa1317420:intron 40.0%
TACAAATGTCAATGTCGTGC+TGG - chr8_4:18657984-18658003 Msa1317420:intron 40.0%
!!! TTTTGAACGGCATTGACAAG+AGG - chr8_4:18658146-18658165 Msa1317420:intron 40.0%
!! TTTGAACGGCATTGACAAGA+GGG - chr8_4:18658147-18658166 Msa1317420:intron 40.0%
TGTGAGAGCAAACCAAATTC+TGG - chr8_4:18658256-18658275 Msa1317420:intron 40.0%
AAATCCTAGAGCTAATGCTG+TGG - chr8_4:18658306-18658325 Msa1317420:intron 40.0%
CAACAAACCAGTGCAAATAC+TGG + chr8_4:18658346-18658365 None:intergenic 40.0%
ATGAAGCAGCGACACAGATA+TGG + chr8_4:18654223-18654242 None:intergenic 45.0%
TTATCTCATGGGAAACAGCG+AGG - chr8_4:18654399-18654418 Msa1317420:intron 45.0%
GATAGACGTGAACATTCGAC+GGG + chr8_4:18654573-18654592 None:intergenic 45.0%
GGATAGACGTGAACATTCGA+CGG + chr8_4:18654574-18654593 None:intergenic 45.0%
!! CAAAAGGTTGGTAACCTGCA+TGG + chr8_4:18654608-18654627 None:intergenic 45.0%
CGATGAAGACAACTCCACAT+TGG + chr8_4:18655072-18655091 None:intergenic 45.0%
! GCAGCTGAGTTGAAATATGG+TGG + chr8_4:18655392-18655411 None:intergenic 45.0%
! GCAGCAGCTGAGTTGAAATA+TGG + chr8_4:18655395-18655414 None:intergenic 45.0%
TTCGAGCAAGGATGTACACA+AGG + chr8_4:18655530-18655549 None:intergenic 45.0%
TTGTGTACATCCTTGCTCGA+AGG - chr8_4:18655529-18655548 Msa1317420:intron 45.0%
TGTGTACATCCTTGCTCGAA+GGG - chr8_4:18655530-18655549 Msa1317420:intron 45.0%
CAGCCTATGATGCATCCATA+TGG - chr8_4:18655583-18655602 Msa1317420:intron 45.0%
AAACTTACAATGGCAACGGC+AGG + chr8_4:18655658-18655677 None:intergenic 45.0%
GGGTCGAATTCAAATGGTCA+AGG - chr8_4:18655930-18655949 Msa1317420:intron 45.0%
!! TATGATGGATTTGACCTGGG+GGG - chr8_4:18656040-18656059 Msa1317420:intron 45.0%
! GTTGGTGTCTCTATGCTTGT+AGG + chr8_4:18656085-18656104 None:intergenic 45.0%
GAGACACCAACCAAATCATC+TGG - chr8_4:18656094-18656113 Msa1317420:intron 45.0%
GAGCTGAAAACCAGCTATCA+CGG - chr8_4:18656209-18656228 Msa1317420:CDS 45.0%
! ATCACGGAGGTTTGTTCAGT+AGG - chr8_4:18656225-18656244 Msa1317420:CDS 45.0%
GACTACTAGTGTACGCAACT+GGG + chr8_4:18656438-18656457 None:intergenic 45.0%
AGACTACTAGTGTACGCAAC+TGG + chr8_4:18656439-18656458 None:intergenic 45.0%
! CATTGGTCTGTGCATAGCAT+TGG + chr8_4:18656507-18656526 None:intergenic 45.0%
CAATGCTATGCACAGACCAA+TGG - chr8_4:18656505-18656524 Msa1317420:intron 45.0%
ATGCACAGACCAATGGAACA+AGG - chr8_4:18656512-18656531 Msa1317420:intron 45.0%
TGGAACAAGGAAAAGAAGCC+GGG - chr8_4:18656525-18656544 Msa1317420:intron 45.0%
TTTGGAAGCAGCAGTCTCTT+TGG + chr8_4:18656914-18656933 None:intergenic 45.0%
! GACTGCTGCTTCCAAAAAGA+CGG - chr8_4:18656918-18656937 Msa1317420:intron 45.0%
GTTGGACCTGTACTTTCTTC+AGG - chr8_4:18656976-18656995 Msa1317420:intron 45.0%
TTCAGGTATGACCACATCAC+TGG - chr8_4:18656993-18657012 Msa1317420:intron 45.0%
AAATAGGAGAAGGGTTCCTC+AGG + chr8_4:18657020-18657039 None:intergenic 45.0%
GCACTAGTGGAAATAGGAGA+AGG + chr8_4:18657030-18657049 None:intergenic 45.0%
! TGTGGAGCACTAGTGGAAAT+AGG + chr8_4:18657036-18657055 None:intergenic 45.0%
TTCAGCTCACGCTCATTCTA+AGG + chr8_4:18657229-18657248 None:intergenic 45.0%
GTGAATCTGCAAGAAGATCC+AGG - chr8_4:18657275-18657294 Msa1317420:intron 45.0%
GCTTATTCCATAAGCTCACC+AGG - chr8_4:18657486-18657505 Msa1317420:intron 45.0%
GGCTACATGTACATGCATCA+GGG + chr8_4:18657652-18657671 None:intergenic 45.0%
AGGCTACATGTACATGCATC+AGG + chr8_4:18657653-18657672 None:intergenic 45.0%
CGTTCTTATCTCCTCTGTAC+AGG - chr8_4:18657714-18657733 Msa1317420:intron 45.0%
TAGGCTACAAAGCATGGACA+CGG - chr8_4:18657901-18657920 Msa1317420:intron 45.0%
ACTGGATACGACATTGACAC+CGG - chr8_4:18657926-18657945 Msa1317420:intron 45.0%
GCAGCGATGCTTCATATTGA+AGG + chr8_4:18658031-18658050 None:intergenic 45.0%
TGCAGCTCTATCATCAGGAT+TGG + chr8_4:18658218-18658237 None:intergenic 45.0%
AGAGCTGCAGAGGAAGAAAA+TGG - chr8_4:18658229-18658248 Msa1317420:intron 45.0%
!! ATTCGACGGGTTGGCTTGAT+TGG + chr8_4:18654560-18654579 None:intergenic 50.0%
!! AATCTGTGGGGAACGGACTA+TGG - chr8_4:18655234-18655253 Msa1317420:intron 50.0%
ATGCTCCTCACCCATACATG+TGG - chr8_4:18655423-18655442 Msa1317420:intron 50.0%
TGCTCCTCACCCATACATGT+GGG - chr8_4:18655424-18655443 Msa1317420:intron 50.0%
! ATCCTATGGAGCACTACCTG+TGG + chr8_4:18655455-18655474 None:intergenic 50.0%
GCAAGGATGTACACAAGGAC+AGG + chr8_4:18655525-18655544 None:intergenic 50.0%
GGCCCATATGGATGCATCAT+AGG + chr8_4:18655589-18655608 None:intergenic 50.0%
! GACGGGCTTGCAATGTCAAT+AGG - chr8_4:18656157-18656176 Msa1317420:intron 50.0%
!! AATGCTGAAAGTGCTGAGCG+TGG - chr8_4:18656187-18656206 Msa1317420:CDS 50.0%
CTGAAAACCAGCTATCACGG+AGG - chr8_4:18656212-18656231 Msa1317420:CDS 50.0%
GAACAAACCTCCGTGATAGC+TGG + chr8_4:18656222-18656241 None:intergenic 50.0%
CTCGTACAGCAAGGAGACAT+AGG + chr8_4:18656276-18656295 None:intergenic 50.0%
GAAGCGATGGCAACACTACA+GGG - chr8_4:18656382-18656401 Msa1317420:CDS 50.0%
AAGCGATGGCAACACTACAG+GGG - chr8_4:18656383-18656402 Msa1317420:CDS 50.0%
ACAAGGAAAAGAAGCCGGGA+TGG - chr8_4:18656529-18656548 Msa1317420:intron 50.0%
CAAGGAAAAGAAGCCGGGAT+GGG - chr8_4:18656530-18656549 Msa1317420:intron 50.0%
! ACAAGGTTGTGGAGCACTAG+TGG + chr8_4:18657043-18657062 None:intergenic 50.0%
ACTAGTGCTCCACAACCTTG+TGG - chr8_4:18657042-18657061 Msa1317420:intron 50.0%
GGCAAAACTCCACAAGGTTG+TGG + chr8_4:18657054-18657073 None:intergenic 50.0%
TCAGGAGGCAAAACTCCACA+AGG + chr8_4:18657060-18657079 None:intergenic 50.0%
! GAGTTTTGCCTCCTGAAGCT+TGG - chr8_4:18657064-18657083 Msa1317420:intron 50.0%
AGTACCTGCATCCAAGCTTC+AGG + chr8_4:18657078-18657097 None:intergenic 50.0%
CTGCAAGAAGATCCAGGCTT+AGG - chr8_4:18657281-18657300 Msa1317420:intron 50.0%
AAGATCCAGGCTTAGGAAGC+AGG - chr8_4:18657288-18657307 Msa1317420:intron 50.0%
TCATACCTGCTTCCTAAGCC+TGG + chr8_4:18657296-18657315 None:intergenic 50.0%
TCGTGCCAATTCTTCAGCCT+CGG + chr8_4:18657740-18657759 None:intergenic 50.0%
! CTGGTGTCAGACACATGACA+TGG - chr8_4:18658003-18658022 Msa1317420:intron 50.0%
TCCTGATGATAGAGCTGCAG+AGG - chr8_4:18658219-18658238 Msa1317420:intron 50.0%
TCCTCTGCAGCTCTATCATC+AGG + chr8_4:18658223-18658242 None:intergenic 50.0%
CGCAGCTTTGCACCAGAATT+TGG + chr8_4:18658271-18658290 None:intergenic 50.0%
CTCATGGGAAACAGCGAGGA+TGG - chr8_4:18654403-18654422 Msa1317420:intron 55.0%
GACGTGAACATTCGACGGGT+TGG + chr8_4:18654569-18654588 None:intergenic 55.0%
TTCAACTCAGCTGCTGCTCC+TGG - chr8_4:18655398-18655417 Msa1317420:intron 55.0%
! TATGGGTGAGGAGCATGACC+AGG + chr8_4:18655419-18655438 None:intergenic 55.0%
GCTCCTCACCCATACATGTG+GGG - chr8_4:18655425-18655444 Msa1317420:intron 55.0%
GTGGTGGTCCCCACATGTAT+GGG + chr8_4:18655436-18655455 None:intergenic 55.0%
TGTGGTGGTCCCCACATGTA+TGG + chr8_4:18655437-18655456 None:intergenic 55.0%
ATACATGTGGGGACCACCAC+AGG - chr8_4:18655436-18655455 Msa1317420:CDS 55.0%
! CTATGGAGCACTACCTGTGG+TGG + chr8_4:18655452-18655471 None:intergenic 55.0%
CACCACAGGTAGTGCTCCAT+AGG - chr8_4:18655450-18655469 Msa1317420:CDS 55.0%
GATACTGAGGGTTCCAGCGA+TGG - chr8_4:18656360-18656379 Msa1317420:intron 55.0%
GGAAGCGATGGCAACACTAC+AGG - chr8_4:18656381-18656400 Msa1317420:CDS 55.0%
! TGGTTGTTGGTGTCCCATCC+CGG + chr8_4:18656546-18656565 None:intergenic 55.0%
GATGGGACACCAACAACCAC+TGG - chr8_4:18656547-18656566 Msa1317420:intron 55.0%
! CTGAAACGAGGTGCCAGTCT+TGG + chr8_4:18656758-18656777 None:intergenic 55.0%
TGACCACATCACTGGACCTG+AGG - chr8_4:18657001-18657020 Msa1317420:intron 55.0%
GTTCCTCAGGTCCAGTGATG+TGG + chr8_4:18657007-18657026 None:intergenic 55.0%
ACCTGCATCCAAGCTTCAGG+AGG + chr8_4:18657075-18657094 None:intergenic 55.0%
AGCGTGAGCTGAAACGTGAG+AGG - chr8_4:18657236-18657255 Msa1317420:CDS 55.0%
GTGAGCTGAAACGTGAGAGG+AGG - chr8_4:18657239-18657258 Msa1317420:CDS 55.0%
CATGCATCAGGGCCGTGTTT+GGG + chr8_4:18657641-18657660 None:intergenic 55.0%
ACATGCATCAGGGCCGTGTT+TGG + chr8_4:18657642-18657661 None:intergenic 55.0%
TATCTCCTCTGTACAGGCCG+AGG - chr8_4:18657720-18657739 Msa1317420:intron 55.0%
ACAGGCCGAGGCTGAAGAAT+TGG - chr8_4:18657732-18657751 Msa1317420:intron 55.0%
CAAAGCATGGACACGGACAC+TGG - chr8_4:18657908-18657927 Msa1317420:intron 55.0%
! GCTGCCACAGCATTAGCTCT+AGG + chr8_4:18658313-18658332 None:intergenic 55.0%
TCCTGATTGGGCTGCCATGC+AGG - chr8_4:18654591-18654610 Msa1317420:intron 60.0%
ACCTGCATGGCAGCCCAATC+AGG + chr8_4:18654595-18654614 None:intergenic 60.0%
GGTCCCCACATGTATGGGTG+AGG + chr8_4:18655431-18655450 None:intergenic 60.0%
GGTGCATATGGCGGCCCATA+TGG + chr8_4:18655601-18655620 None:intergenic 60.0%
TGACCTGGGGGGAACTATGC+AGG - chr8_4:18656051-18656070 Msa1317420:intron 60.0%
TGGGGGGAACTATGCAGGCT+GGG - chr8_4:18656056-18656075 Msa1317420:intron 60.0%
GGTTCCAGCGATGGAAGCGA+TGG - chr8_4:18656369-18656388 Msa1317420:intron 60.0%
GTTGCCATCGCTTCCATCGC+TGG + chr8_4:18656376-18656395 None:intergenic 60.0%
GCCTCCTGAAGCTTGGATGC+AGG - chr8_4:18657071-18657090 Msa1317420:intron 60.0%
TTCAGCCTCGGCCTGTACAG+AGG + chr8_4:18657728-18657747 None:intergenic 60.0%
CAGCCTGCATAGTTCCCCCC+AGG + chr8_4:18656057-18656076 None:intergenic 65.0%
CTGGGGGGAACTATGCAGGC+TGG - chr8_4:18656055-18656074 Msa1317420:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 18653120 18658714 18653120 ID=Msa1317420;Name=Msa1317420
chr8_4 mRNA 18653120 18658714 18653120 ID=Msa1317420-mRNA-1;Parent=Msa1317420;Name=Msa1317420-mRNA-1;_AED=0.17;_eAED=0.17;_QI=243|1|1|1|0.91|0.84|13|375|422
chr8_4 exon 18653120 18653731 18653120 ID=Msa1317420-mRNA-1:exon:6928;Parent=Msa1317420-mRNA-1
chr8_4 exon 18653973 18654098 18653973 ID=Msa1317420-mRNA-1:exon:6927;Parent=Msa1317420-mRNA-1
chr8_4 exon 18654525 18654602 18654525 ID=Msa1317420-mRNA-1:exon:6926;Parent=Msa1317420-mRNA-1
chr8_4 exon 18654742 18654962 18654742 ID=Msa1317420-mRNA-1:exon:6925;Parent=Msa1317420-mRNA-1
chr8_4 exon 18655266 18655314 18655266 ID=Msa1317420-mRNA-1:exon:6924;Parent=Msa1317420-mRNA-1
chr8_4 exon 18655430 18655478 18655430 ID=Msa1317420-mRNA-1:exon:6923;Parent=Msa1317420-mRNA-1
chr8_4 exon 18655601 18655761 18655601 ID=Msa1317420-mRNA-1:exon:6922;Parent=Msa1317420-mRNA-1
chr8_4 exon 18655863 18655904 18655863 ID=Msa1317420-mRNA-1:exon:6921;Parent=Msa1317420-mRNA-1
chr8_4 exon 18656165 18656248 18656165 ID=Msa1317420-mRNA-1:exon:6920;Parent=Msa1317420-mRNA-1
chr8_4 exon 18656377 18656472 18656377 ID=Msa1317420-mRNA-1:exon:6919;Parent=Msa1317420-mRNA-1
chr8_4 exon 18657222 18657284 18657222 ID=Msa1317420-mRNA-1:exon:6918;Parent=Msa1317420-mRNA-1
chr8_4 exon 18657366 18657481 18657366 ID=Msa1317420-mRNA-1:exon:6917;Parent=Msa1317420-mRNA-1
chr8_4 exon 18658525 18658714 18658525 ID=Msa1317420-mRNA-1:exon:6916;Parent=Msa1317420-mRNA-1
chr8_4 five_prime_UTR 18658525 18658714 18658525 ID=Msa1317420-mRNA-1:five_prime_utr;Parent=Msa1317420-mRNA-1
chr8_4 five_prime_UTR 18657429 18657481 18657429 ID=Msa1317420-mRNA-1:five_prime_utr;Parent=Msa1317420-mRNA-1
chr8_4 CDS 18657366 18657428 18657366 ID=Msa1317420-mRNA-1:cds;Parent=Msa1317420-mRNA-1
chr8_4 CDS 18657222 18657284 18657222 ID=Msa1317420-mRNA-1:cds;Parent=Msa1317420-mRNA-1
chr8_4 CDS 18656377 18656472 18656377 ID=Msa1317420-mRNA-1:cds;Parent=Msa1317420-mRNA-1
chr8_4 CDS 18656165 18656248 18656165 ID=Msa1317420-mRNA-1:cds;Parent=Msa1317420-mRNA-1
chr8_4 CDS 18655863 18655904 18655863 ID=Msa1317420-mRNA-1:cds;Parent=Msa1317420-mRNA-1
chr8_4 CDS 18655601 18655761 18655601 ID=Msa1317420-mRNA-1:cds;Parent=Msa1317420-mRNA-1
chr8_4 CDS 18655430 18655478 18655430 ID=Msa1317420-mRNA-1:cds;Parent=Msa1317420-mRNA-1
chr8_4 CDS 18655266 18655314 18655266 ID=Msa1317420-mRNA-1:cds;Parent=Msa1317420-mRNA-1
chr8_4 CDS 18654742 18654962 18654742 ID=Msa1317420-mRNA-1:cds;Parent=Msa1317420-mRNA-1
chr8_4 CDS 18654525 18654602 18654525 ID=Msa1317420-mRNA-1:cds;Parent=Msa1317420-mRNA-1
chr8_4 CDS 18653973 18654098 18653973 ID=Msa1317420-mRNA-1:cds;Parent=Msa1317420-mRNA-1
chr8_4 CDS 18653495 18653731 18653495 ID=Msa1317420-mRNA-1:cds;Parent=Msa1317420-mRNA-1
chr8_4 three_prime_UTR 18653120 18653494 18653120 ID=Msa1317420-mRNA-1:three_prime_utr;Parent=Msa1317420-mRNA-1
Gene Sequence

>Msa1317420

ATGGGAAACAGCGAGGATGGAAAATCCGTTAAGATTGAAAGGCCTTCTTCACCTGTAACAACTGATCAGACCAATCAAGCCAACCCGTCGAATGTTCACGTCTATCCTGATTGGGCTGCCATGCAGGCATATTATGGGCAAAGAGTCAACATTCCACCATATTTCAACTCAGCTGCTGCTCCTGGTCATGCTCCTCACCCATACATGTGGGGACCACCACAGCCTATGATGCATCCATATGGGCCGCCATATGCACCACCATTTTATTCACATGGAGGGGTTTATACTCATCCTGCCGTTGCCATTGGGTCGAATTCAAATGGTCAAGGAATTCCATCTTCACCTGCTGCTGGGACACCTACAAGCATAGAGACACCAACCAAATCATCTGGAAACACTGATCAGGGTTTAATGAAAAAATTGAAAGGATTTGACGGGCTTGCAATGTCAATAGGCAATGGCAATGCTGAAAGTGCTGAGCGTGGAGCTGAAAACCAGCTATCACGGAGTGTGGATACTGAGGGTTCCAGCGATGGAAGCGATGGCAACACTACAGGGACCAATGGAACAAGGAAAAGAAGCCGGGATGGGACACCAACAACCACTGATGGAGAAGGGAAAGCTGAGATGCAAGACAGTCAAGTTTCCAAAGAGACTGCTGCTTCCAAAAAGACGGTGTCAGTTATCGCAACCAGTGCTGCAGAAAAAATGGTTGGACCTGTACTTTCTTCAGGTATGACCACATCACTGGACCTGAGGAACCCTTCTCCTATTTCCACTAGTGCTCCACAACCTTGTGGAGTTTTGCCTCCTGAAGCTTGGATGCAGAATGAGCGTGAGCTGAAACGTGAGAGGAGGAAACAGTCAAATCGTGAATCTGCAAGAAGATCCAGGCTTAGGAAGCAGGCCGAGGCTGAAGAATTGGCACGAAGAGTCGATGCATTGACTGCTGAGAATTTGGCGCTGAAATCGGAAATGAATGAATTGGCTGAAAATTCGGCGAAGCTGAAGATTGAAAATGCTACATTAAAGGAAAAGCTGGAAAACACTCAACTGGGACAAACAGAAGAGATAATTTTGAACGGCATTGACAAGAGGGCTACACCTGTAAGTACAGAAAACTTACTGTCAAGAGTTGATAATTCCAATCCTGATGATAGAGCTGCAGAGGAAGAAAATGGTTTCTGTGAGAGCAAACCAAATTCTGGTGCAAAGCTGCGTCAACTACTTGACACAAATCCTAGAGCTAATGCTGTGGCAGCTAGTTGA

Protein sequence

>Msa1317420

MGNSEDGKSVKIERPSSPVTTDQTNQANPSNVHVYPDWAAMQAYYGQRVNIPPYFNSAAAPGHAPHPYMWGPPQPMMHPYGPPYAPPFYSHGGVYTHPAVAIGSNSNGQGIPSSPAAGTPTSIETPTKSSGNTDQGLMKKLKGFDGLAMSIGNGNAESAERGAENQLSRSVDTEGSSDGSDGNTTGTNGTRKRSRDGTPTTTDGEGKAEMQDSQVSKETAASKKTVSVIATSAAEKMVGPVLSSGMTTSLDLRNPSPISTSAPQPCGVLPPEAWMQNERELKRERRKQSNRESARRSRLRKQAEAEELARRVDALTAENLALKSEMNELAENSAKLKIENATLKEKLENTQLGQTEEIILNGIDKRATPVSTENLLSRVDNSNPDDRAAEEENGFCESKPNSGAKLRQLLDTNPRANAVAAS*