Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1317940 | sp|P42749|UBC5_ARATH | 70.466 | 193 | 32 | 5 | 1 | 176 | 1 | 185 | 2.12e-87 | 257 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1317940 | A0A0B2R412 | 83.511 | 188 | 14 | 3 | 1 | 176 | 1 | 183 | 1.01e-104 | 307 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1317940 | Msa1440200 | 0.813995 | 1.930282e-51 | -8.615850e-47 |
| Msa0934850 | Msa1317940 | 0.802446 | 5.589860e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1317940 | MtrunA17_Chr8g0348701 | 86.702 | 188 | 10 | 2 | 1 | 176 | 1 | 185 | 3.68e-100 | 286 |
| Msa1317940 | MtrunA17_Chr8g0387131 | 70.213 | 188 | 38 | 3 | 1 | 176 | 1 | 182 | 7.42e-92 | 265 |
| Msa1317940 | MtrunA17_Chr4g0059291 | 61.497 | 187 | 57 | 2 | 1 | 175 | 1 | 184 | 2.10e-77 | 229 |
| Msa1317940 | MtrunA17_Chr1g0186291 | 63.780 | 127 | 38 | 2 | 16 | 139 | 1 | 122 | 1.65e-53 | 166 |
| Msa1317940 | MtrunA17_Chr8g0387151 | 77.465 | 71 | 16 | 0 | 10 | 80 | 1 | 71 | 6.92e-38 | 125 |
| Msa1317940 | MtrunA17_Chr8g0387171 | 75.758 | 66 | 16 | 0 | 16 | 81 | 6 | 71 | 1.96e-32 | 111 |
| Msa1317940 | MtrunA17_Chr6g0479281 | 65.000 | 80 | 19 | 1 | 1 | 80 | 1 | 71 | 3.90e-31 | 108 |
| Msa1317940 | MtrunA17_Chr2g0316201 | 41.772 | 79 | 45 | 1 | 27 | 105 | 32 | 109 | 1.22e-19 | 80.9 |
| Msa1317940 | MtrunA17_Chr2g0316211 | 41.772 | 79 | 45 | 1 | 27 | 105 | 32 | 109 | 1.86e-19 | 80.1 |
| Msa1317940 | MtrunA17_Chr3g0131871 | 27.206 | 136 | 91 | 1 | 18 | 145 | 21 | 156 | 3.66e-19 | 80.5 |
| Msa1317940 | MtrunA17_Chr5g0432831 | 33.065 | 124 | 70 | 3 | 25 | 138 | 26 | 146 | 9.70e-19 | 78.2 |
| Msa1317940 | MtrunA17_Chr3g0108261 | 33.065 | 124 | 70 | 3 | 25 | 138 | 26 | 146 | 1.11e-18 | 78.2 |
| Msa1317940 | MtrunA17_Chr7g0275361 | 32.258 | 124 | 71 | 3 | 25 | 138 | 26 | 146 | 2.53e-18 | 77.0 |
| Msa1317940 | MtrunA17_Chr4g0037011 | 31.452 | 124 | 72 | 3 | 25 | 138 | 26 | 146 | 1.40e-17 | 75.1 |
| Msa1317940 | MtrunA17_Chr8g0369311 | 32.258 | 124 | 71 | 3 | 25 | 138 | 82 | 202 | 1.43e-17 | 76.6 |
| Msa1317940 | MtrunA17_Chr1g0154011 | 33.333 | 111 | 61 | 3 | 38 | 138 | 39 | 146 | 1.99e-17 | 74.7 |
| Msa1317940 | MtrunA17_Chr8g0362321 | 27.027 | 148 | 95 | 4 | 1 | 136 | 1 | 147 | 3.95e-17 | 74.3 |
| Msa1317940 | MtrunA17_Chr4g0060351 | 27.027 | 148 | 95 | 4 | 1 | 136 | 1 | 147 | 5.49e-17 | 73.9 |
| Msa1317940 | MtrunA17_Chr3g0139901 | 28.467 | 137 | 83 | 4 | 18 | 141 | 21 | 155 | 4.77e-16 | 71.6 |
| Msa1317940 | MtrunA17_Chr1g0186191 | 73.913 | 46 | 10 | 2 | 16 | 60 | 1 | 45 | 2.32e-15 | 72.8 |
| Msa1317940 | MtrunA17_Chr1g0199951 | 33.103 | 145 | 82 | 7 | 2 | 133 | 40 | 182 | 9.24e-14 | 66.2 |
| Msa1317940 | MtrunA17_Chr5g0396451 | 29.839 | 124 | 75 | 5 | 6 | 118 | 35 | 157 | 1.89e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1317940 | AT1G63800.1 | 70.466 | 193 | 32 | 5 | 1 | 176 | 1 | 185 | 2.15e-88 | 257 |
| Msa1317940 | AT5G41340.1 | 67.526 | 194 | 38 | 5 | 1 | 176 | 1 | 187 | 5.35e-80 | 236 |
| Msa1317940 | AT1G63800.2 | 67.797 | 177 | 34 | 5 | 16 | 176 | 1 | 170 | 4.36e-77 | 228 |
| Msa1317940 | AT2G46030.5 | 59.358 | 187 | 61 | 3 | 1 | 176 | 1 | 183 | 6.45e-73 | 218 |
| Msa1317940 | AT2G46030.1 | 59.358 | 187 | 61 | 3 | 1 | 176 | 1 | 183 | 6.45e-73 | 218 |
| Msa1317940 | AT2G46030.3 | 60.428 | 187 | 59 | 3 | 1 | 176 | 73 | 255 | 2.17e-72 | 219 |
| Msa1317940 | AT2G46030.4 | 56.977 | 172 | 59 | 3 | 16 | 176 | 19 | 186 | 3.28e-62 | 191 |
| Msa1317940 | AT2G46030.2 | 56.977 | 172 | 59 | 3 | 16 | 176 | 19 | 186 | 3.28e-62 | 191 |
| Msa1317940 | AT5G41340.2 | 62.914 | 151 | 31 | 5 | 44 | 176 | 9 | 152 | 2.01e-51 | 162 |
| Msa1317940 | AT1G78870.3 | 42.667 | 75 | 42 | 1 | 27 | 101 | 32 | 105 | 8.96e-20 | 80.1 |
| Msa1317940 | AT1G78870.2 | 41.772 | 79 | 45 | 1 | 27 | 105 | 32 | 109 | 1.71e-19 | 80.9 |
| Msa1317940 | AT3G08690.2 | 33.557 | 149 | 85 | 4 | 1 | 138 | 1 | 146 | 2.91e-19 | 80.1 |
| Msa1317940 | AT3G08690.1 | 33.557 | 149 | 85 | 4 | 1 | 138 | 1 | 146 | 2.91e-19 | 80.1 |
| Msa1317940 | AT1G64230.2 | 34.677 | 124 | 68 | 3 | 25 | 138 | 26 | 146 | 3.11e-19 | 79.7 |
| Msa1317940 | AT1G64230.1 | 34.677 | 124 | 68 | 3 | 25 | 138 | 26 | 146 | 3.11e-19 | 79.7 |
| Msa1317940 | AT5G41700.5 | 33.871 | 124 | 69 | 3 | 25 | 138 | 26 | 146 | 3.97e-19 | 79.7 |
| Msa1317940 | AT5G41700.2 | 33.871 | 124 | 69 | 3 | 25 | 138 | 26 | 146 | 3.97e-19 | 79.7 |
| Msa1317940 | AT5G41700.1 | 33.871 | 124 | 69 | 3 | 25 | 138 | 26 | 146 | 3.97e-19 | 79.7 |
| Msa1317940 | AT5G41700.4 | 33.871 | 124 | 69 | 3 | 25 | 138 | 27 | 147 | 5.09e-19 | 79.3 |
| Msa1317940 | AT1G64230.5 | 34.677 | 124 | 68 | 3 | 25 | 138 | 68 | 188 | 5.57e-19 | 80.5 |
| Msa1317940 | AT1G64230.4 | 34.677 | 124 | 68 | 3 | 25 | 138 | 68 | 188 | 5.57e-19 | 80.5 |
| Msa1317940 | AT5G56150.1 | 33.607 | 122 | 68 | 3 | 27 | 138 | 28 | 146 | 6.21e-19 | 79.0 |
| Msa1317940 | AT1G16890.2 | 40.506 | 79 | 46 | 1 | 27 | 105 | 32 | 109 | 7.46e-19 | 79.0 |
| Msa1317940 | AT1G64230.3 | 34.677 | 124 | 68 | 3 | 25 | 138 | 35 | 155 | 7.69e-19 | 79.0 |
| Msa1317940 | AT1G16890.1 | 41.558 | 77 | 44 | 1 | 29 | 105 | 1 | 76 | 9.83e-19 | 77.8 |
| Msa1317940 | AT5G53300.2 | 33.871 | 124 | 69 | 3 | 25 | 138 | 26 | 146 | 1.01e-18 | 78.6 |
| Msa1317940 | AT5G53300.4 | 33.871 | 124 | 69 | 3 | 25 | 138 | 26 | 146 | 1.01e-18 | 78.6 |
| Msa1317940 | AT5G53300.1 | 33.871 | 124 | 69 | 3 | 25 | 138 | 26 | 146 | 1.01e-18 | 78.6 |
| Msa1317940 | AT1G78870.4 | 41.558 | 77 | 44 | 1 | 29 | 105 | 1 | 76 | 1.02e-18 | 77.8 |
| Msa1317940 | AT1G16890.3 | 40.506 | 79 | 46 | 1 | 27 | 105 | 41 | 118 | 1.67e-18 | 78.2 |
| Msa1317940 | AT3G08700.2 | 37.838 | 111 | 56 | 3 | 38 | 138 | 40 | 147 | 2.17e-18 | 77.8 |
| Msa1317940 | AT3G08700.1 | 37.838 | 111 | 56 | 3 | 38 | 138 | 40 | 147 | 2.17e-18 | 77.8 |
| Msa1317940 | AT4G27960.1 | 32.258 | 124 | 71 | 3 | 25 | 138 | 26 | 146 | 3.04e-18 | 77.4 |
| Msa1317940 | AT4G27960.2 | 36.036 | 111 | 58 | 3 | 38 | 138 | 69 | 176 | 6.97e-18 | 77.0 |
| Msa1317940 | AT3G24515.3 | 30.496 | 141 | 84 | 5 | 19 | 147 | 60 | 198 | 4.31e-17 | 78.2 |
| Msa1317940 | AT1G78870.1 | 41.026 | 78 | 44 | 2 | 29 | 105 | 1 | 77 | 4.88e-17 | 73.6 |
| Msa1317940 | AT2G16740.1 | 35.135 | 111 | 59 | 3 | 38 | 138 | 39 | 146 | 6.15e-17 | 73.9 |
| Msa1317940 | AT2G02760.1 | 27.027 | 148 | 95 | 4 | 1 | 136 | 1 | 147 | 1.26e-16 | 73.2 |
| Msa1317940 | AT2G02760.2 | 27.027 | 148 | 95 | 4 | 1 | 136 | 1 | 147 | 1.26e-16 | 73.2 |
| Msa1317940 | AT2G02760.4 | 27.027 | 148 | 95 | 4 | 1 | 136 | 1 | 147 | 1.26e-16 | 73.2 |
| Msa1317940 | AT2G02760.3 | 27.027 | 148 | 95 | 4 | 1 | 136 | 1 | 147 | 1.26e-16 | 73.2 |
| Msa1317940 | AT5G25760.1 | 31.304 | 115 | 65 | 3 | 17 | 119 | 20 | 132 | 1.32e-16 | 73.2 |
| Msa1317940 | AT5G25760.2 | 31.304 | 115 | 65 | 3 | 17 | 119 | 20 | 132 | 1.32e-16 | 73.2 |
| Msa1317940 | AT5G50870.1 | 27.049 | 122 | 81 | 2 | 26 | 139 | 29 | 150 | 2.19e-16 | 73.6 |
| Msa1317940 | AT5G62540.1 | 27.703 | 148 | 94 | 4 | 1 | 136 | 1 | 147 | 2.58e-16 | 72.4 |
| Msa1317940 | AT1G14400.1 | 26.351 | 148 | 96 | 4 | 1 | 136 | 1 | 147 | 7.22e-16 | 71.2 |
| Msa1317940 | AT1G14400.2 | 26.351 | 148 | 96 | 4 | 1 | 136 | 1 | 147 | 7.22e-16 | 71.2 |
| Msa1317940 | AT5G50870.2 | 32.500 | 80 | 54 | 0 | 26 | 105 | 29 | 108 | 1.06e-15 | 72.0 |
| Msa1317940 | AT5G53300.3 | 42.857 | 63 | 35 | 1 | 38 | 100 | 39 | 100 | 1.07e-15 | 69.7 |
| Msa1317940 | AT5G56150.2 | 36.486 | 74 | 46 | 1 | 27 | 100 | 28 | 100 | 1.37e-15 | 69.3 |
| Msa1317940 | AT5G41700.3 | 35.526 | 76 | 48 | 1 | 25 | 100 | 26 | 100 | 1.91e-15 | 70.1 |
| Msa1317940 | AT3G24515.1 | 32.540 | 126 | 72 | 4 | 34 | 147 | 49 | 173 | 3.03e-15 | 72.8 |
| Msa1317940 | AT1G36340.2 | 25.581 | 129 | 87 | 2 | 18 | 138 | 25 | 152 | 2.71e-14 | 67.0 |
| Msa1317940 | AT1G36340.1 | 25.581 | 129 | 87 | 2 | 18 | 138 | 25 | 152 | 2.71e-14 | 67.0 |
| Msa1317940 | AT3G13550.1 | 29.032 | 124 | 75 | 3 | 26 | 139 | 62 | 182 | 2.62e-13 | 65.1 |
Find 66 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTCACTGGGTCCATGAAAA+TGG | 0.224067 | 8_4:+19655956 | None:intergenic |
| AAGACAGCAAGCAGAAAATT+AGG | 0.264570 | 8_4:+19656337 | None:intergenic |
| GTGGCAGCTCCAATGTCTTC+TGG | 0.271016 | 8_4:+19652882 | None:intergenic |
| ACTTATGAACAAAGGGTTAA+AGG | 0.277663 | 8_4:-19654837 | Msa1317940:intron |
| GCAACTGAAAGAAGTAAAAT+TGG | 0.280061 | 8_4:+19656312 | None:intergenic |
| TAGGATGATGAGTGATTATA+AGG | 0.329799 | 8_4:-19656016 | Msa1317940:CDS |
| ACAAGAAATAAGATTACATT+AGG | 0.334730 | 8_4:+19652605 | None:intergenic |
| CCTTATAAGTCTCCTTCAAT+AGG | 0.346660 | 8_4:-19655281 | Msa1317940:CDS |
| CCTATTGAAGGAGACTTATA+AGG | 0.347185 | 8_4:+19655281 | None:intergenic |
| ACAGTGAAAAGTTAATTAAC+AGG | 0.358847 | 8_4:+19652648 | None:intergenic |
| GCATACATCTCATCAACATT+TGG | 0.367032 | 8_4:+19655236 | None:intergenic |
| AGAAGGGAAATTACTTTCAC+TGG | 0.388357 | 8_4:+19655942 | None:intergenic |
| CATTCAAGGGTCTGATGGAT+TGG | 0.397622 | 8_4:+19654895 | None:intergenic |
| AGCCGCAGCTTCTCCATTCA+AGG | 0.418137 | 8_4:+19654881 | None:intergenic |
| CATACATCTCATCAACATTT+GGG | 0.422172 | 8_4:+19655237 | None:intergenic |
| TTGCATACACAAGGCAAACT+AGG | 0.429004 | 8_4:+19652773 | None:intergenic |
| TCCATCTCTCGTCGCTTGCT+TGG | 0.445114 | 8_4:+19656154 | None:intergenic |
| TTCTCCATTCAAGGGTCTGA+TGG | 0.449183 | 8_4:+19654890 | None:intergenic |
| TTCCACACACCTCCTTGATA+AGG | 0.450621 | 8_4:+19655332 | None:intergenic |
| TTAACCCTTTGTTCATAAGT+AGG | 0.451976 | 8_4:+19654840 | None:intergenic |
| TTCATTCAAATGAATGTGCT+TGG | 0.460489 | 8_4:-19652697 | Msa1317940:three_prime_UTR |
| ATATGATTCTAGTGATGAAC+AGG | 0.462460 | 8_4:-19652814 | Msa1317940:CDS |
| TCTTTCAGTTGCACAAGTAA+AGG | 0.464373 | 8_4:-19656301 | Msa1317940:five_prime_UTR |
| TTGCTTGGTGAAGACATGTT+TGG | 0.467365 | 8_4:+19656169 | None:intergenic |
| TAGCTCCTCATCTTCATCAC+TGG | 0.468953 | 8_4:+19652848 | None:intergenic |
| ATCACTGGATTTCTCTTCTG+TGG | 0.473541 | 8_4:+19652863 | None:intergenic |
| ATTCAAGGGTCTGATGGATT+GGG | 0.475905 | 8_4:+19654896 | None:intergenic |
| CAATCCATCAGACCCTTGAA+TGG | 0.497962 | 8_4:-19654894 | Msa1317940:CDS |
| ACCAAGCAAGCGACGAGAGA+TGG | 0.500308 | 8_4:-19656155 | Msa1317940:CDS |
| AAAAGTTAATTAACAGGAAG+GGG | 0.501073 | 8_4:+19652654 | None:intergenic |
| GACTTATAAGGATAAGCATC+CGG | 0.502445 | 8_4:+19655293 | None:intergenic |
| GAGAGAATTAAGGGAAGAAG+AGG | 0.503768 | 8_4:+19656266 | None:intergenic |
| CTTGATGTTATCAATCAGAC+TGG | 0.504476 | 8_4:-19655088 | Msa1317940:CDS |
| AGATAAAATACAGAAAGAAC+AGG | 0.507580 | 8_4:+19652748 | None:intergenic |
| CCCTTTGTTCATAAGTAGGT+CGG | 0.512751 | 8_4:+19654844 | None:intergenic |
| TTATTGATGAAACCTATTGA+AGG | 0.514930 | 8_4:+19655269 | None:intergenic |
| TGCATACACAAGGCAAACTA+GGG | 0.528689 | 8_4:+19652774 | None:intergenic |
| CGATAATTTCAGGTCAGGAT+CGG | 0.530341 | 8_4:-19655116 | Msa1317940:intron |
| TGAAAAGTTAATTAACAGGA+AGG | 0.531442 | 8_4:+19652652 | None:intergenic |
| CCGACCTACTTATGAACAAA+GGG | 0.543975 | 8_4:-19654844 | Msa1317940:CDS |
| CTCATGTCAGGTCCTTATCA+AGG | 0.551300 | 8_4:-19655344 | Msa1317940:intron |
| TTAAGGGAAGAAGAGGATTG+AGG | 0.553340 | 8_4:+19656273 | None:intergenic |
| AATGTGCTTGGATGTTGGTA+GGG | 0.554834 | 8_4:-19652685 | Msa1317940:three_prime_UTR |
| GAAATCCAGTGATGAAGATG+AGG | 0.558452 | 8_4:-19652853 | Msa1317940:CDS |
| GAATGTGCTTGGATGTTGGT+AGG | 0.572808 | 8_4:-19652686 | Msa1317940:three_prime_UTR |
| AGATTACATTAGGAAATCAA+TGG | 0.575088 | 8_4:+19652615 | None:intergenic |
| GAAAAGTTAATTAACAGGAA+GGG | 0.577374 | 8_4:+19652653 | None:intergenic |
| GAAAGTAAGAGTTGAGCTAC+CGG | 0.580502 | 8_4:-19655312 | Msa1317940:CDS |
| TCTAGTGATGAACAGGTGGC+TGG | 0.581781 | 8_4:-19652807 | Msa1317940:CDS |
| GAAGGGAAATTACTTTCACT+GGG | 0.588634 | 8_4:+19655943 | None:intergenic |
| TATGCGAAGCCAGAAGACAT+TGG | 0.591557 | 8_4:-19652891 | Msa1317940:CDS |
| ACCGACCTACTTATGAACAA+AGG | 0.596006 | 8_4:-19654845 | Msa1317940:CDS |
| GATGATGAGTGATTATAAGG+TGG | 0.599886 | 8_4:-19656013 | Msa1317940:CDS |
| AAGGTGGAAATGATTAACGA+TGG | 0.607049 | 8_4:-19655997 | Msa1317940:CDS |
| AAATGAATGTGCTTGGATGT+TGG | 0.607878 | 8_4:-19652690 | Msa1317940:three_prime_UTR |
| GCCGCAGCTTCTCCATTCAA+GGG | 0.608333 | 8_4:+19654882 | None:intergenic |
| GTCCTTATCAAGGAGGTGTG+TGG | 0.614843 | 8_4:-19655334 | Msa1317940:CDS |
| TTGGGATACAGAAGGAGTTG+TGG | 0.619225 | 8_4:+19654914 | None:intergenic |
| ATGTGCTTGGATGTTGGTAG+GGG | 0.621134 | 8_4:-19652684 | Msa1317940:three_prime_UTR |
| ACCCTTGAATGGAGAAGCTG+CGG | 0.644315 | 8_4:-19654883 | Msa1317940:CDS |
| CTGATGGATTGGGATACAGA+AGG | 0.649918 | 8_4:+19654906 | None:intergenic |
| GAACAGGACTTGCATACACA+AGG | 0.653015 | 8_4:+19652764 | None:intergenic |
| TGATTCTAGTGATGAACAGG+TGG | 0.687145 | 8_4:-19652811 | Msa1317940:CDS |
| ATTAAGCTGTTAGCATAGTG+TGG | 0.711182 | 8_4:-19652559 | Msa1317940:three_prime_UTR |
| ATGTCAGGTCCTTATCAAGG+AGG | 0.713248 | 8_4:-19655341 | Msa1317940:intron |
| GCATACACAAGGCAAACTAG+GGG | 0.727411 | 8_4:+19652775 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTGTTTTTTTTCTATTA+AGG | - | chr8_4:19653022-19653041 | Msa1317940:intron | 10.0% |
| !!! | TTTTGTTTTTTTTCTATTAA+GGG | - | chr8_4:19653023-19653042 | Msa1317940:intron | 10.0% |
| !!! | AATTTTTAGTTGAAAATAAT+TGG | - | chr8_4:19653326-19653345 | Msa1317940:intron | 10.0% |
| !! | AAACAAATTATAGAAAAGAA+GGG | + | chr8_4:19652967-19652986 | None:intergenic | 15.0% |
| !!! | AACAATATTTTGGTTAATTT+TGG | - | chr8_4:19653212-19653231 | Msa1317940:intron | 15.0% |
| !!! | CAAATCTTATTTTAACATTA+AGG | + | chr8_4:19653450-19653469 | None:intergenic | 15.0% |
| !! | TTAAAATTAATTAACATGTG+AGG | + | chr8_4:19653723-19653742 | None:intergenic | 15.0% |
| !! | TGTTAAATTTATAATGAAAG+AGG | - | chr8_4:19654680-19654699 | Msa1317940:intron | 15.0% |
| !!! | TAGATATAATTTTTAACTCA+AGG | - | chr8_4:19654820-19654839 | Msa1317940:intron | 15.0% |
| !!! | AGATATAATTTTTAACTCAA+GGG | - | chr8_4:19654821-19654840 | Msa1317940:intron | 15.0% |
| !! | TTATGTTAATTATTAAACAC+AGG | - | chr8_4:19655566-19655585 | Msa1317940:intron | 15.0% |
| !!! | ATCTTTTTATATTTTCTTTG+TGG | - | chr8_4:19655820-19655839 | Msa1317940:intron | 15.0% |
| !!! | ATGAATTATTGTGTAATTTT+CGG | - | chr8_4:19655897-19655916 | Msa1317940:intron | 15.0% |
| !!! | AGTTTTAATCTTTTTCCAAT+TGG | - | chr8_4:19652810-19652829 | Msa1317940:CDS | 20.0% |
| !!! | GTTTTAATCTTTTTCCAATT+GGG | - | chr8_4:19652811-19652830 | Msa1317940:CDS | 20.0% |
| !!! | TCTGTTTTGATTGAAAAATT+AGG | - | chr8_4:19652855-19652874 | Msa1317940:CDS | 20.0% |
| !! | CAAACAAATTATAGAAAAGA+AGG | + | chr8_4:19652968-19652987 | None:intergenic | 20.0% |
| !! | TAAAACCATAATAAGCAAAA+GGG | + | chr8_4:19653281-19653300 | None:intergenic | 20.0% |
| !! | ATAAAACCATAATAAGCAAA+AGG | + | chr8_4:19653282-19653301 | None:intergenic | 20.0% |
| !!! | CATGAGTTTTTTTTTTTTGT+TGG | - | chr8_4:19653349-19653368 | Msa1317940:intron | 20.0% |
| !! | TTGATATCTAATTATGAGAA+AGG | - | chr8_4:19653467-19653486 | Msa1317940:intron | 20.0% |
| !!! | AAGTAAATGTTTGATCATTT+TGG | - | chr8_4:19653747-19653766 | Msa1317940:intron | 20.0% |
| !!! | AGTTTTTGTTTTGATACTTT+TGG | - | chr8_4:19653886-19653905 | Msa1317940:intron | 20.0% |
| !!! | AATTTCGTCTTTTGAATATA+TGG | - | chr8_4:19654099-19654118 | Msa1317940:intron | 20.0% |
| !!! | ATTTCGTCTTTTGAATATAT+GGG | - | chr8_4:19654100-19654119 | Msa1317940:intron | 20.0% |
| !! | TGTTAGCAATAAATAACAAT+AGG | + | chr8_4:19654451-19654470 | None:intergenic | 20.0% |
| !!! | AATCGTTCATTTTTTGTATA+AGG | - | chr8_4:19655198-19655217 | Msa1317940:intron | 20.0% |
| !!! | ATCGTTCATTTTTTGTATAA+GGG | - | chr8_4:19655199-19655218 | Msa1317940:intron | 20.0% |
| !! | TTTGTTGAATTCATTAATGT+GGG | + | chr8_4:19655540-19655559 | None:intergenic | 20.0% |
| !! | ACAAGAAATAAGATTACATT+AGG | + | chr8_4:19656288-19656307 | None:intergenic | 20.0% |
| !! | GAATTTTATGTCCATTTTCA+TGG | - | chr8_4:19652923-19652942 | Msa1317940:intron | 25.0% |
| !!! | GATTTGACTTTTTGTGATTA+TGG | - | chr8_4:19653063-19653082 | Msa1317940:intron | 25.0% |
| !! | TTTGAGAAGCAACAATATTT+TGG | - | chr8_4:19653202-19653221 | Msa1317940:intron | 25.0% |
| ! | GAAAAAACATTGAAATTGCA+AGG | + | chr8_4:19653513-19653532 | None:intergenic | 25.0% |
| ! | TTATTGATGAAACCTATTGA+AGG | + | chr8_4:19653624-19653643 | None:intergenic | 25.0% |
| !! | TTTTGGATTACGATAATTTC+AGG | - | chr8_4:19653764-19653783 | Msa1317940:intron | 25.0% |
| ! | GTTCAATTATAGCACAAATT+AGG | + | chr8_4:19654173-19654192 | None:intergenic | 25.0% |
| ! | ATTGAACACTAAATCAGTAT+TGG | - | chr8_4:19654186-19654205 | Msa1317940:intron | 25.0% |
| ! | TTGAACACTAAATCAGTATT+GGG | - | chr8_4:19654187-19654206 | Msa1317940:intron | 25.0% |
| ! | TAGCAATAAATAACAATAGG+TGG | + | chr8_4:19654448-19654467 | None:intergenic | 25.0% |
| !! | TGTAAGGATACTAAACATTT+TGG | + | chr8_4:19654767-19654786 | None:intergenic | 25.0% |
| ! | ATATCTACTAACAAAGTCAA+TGG | + | chr8_4:19654807-19654826 | None:intergenic | 25.0% |
| ! | ATTAACATCTTATATTCAGC+TGG | + | chr8_4:19654921-19654940 | None:intergenic | 25.0% |
| !! | TGTAACATTTTCTATGGATA+AGG | + | chr8_4:19654999-19655018 | None:intergenic | 25.0% |
| !! | AGAACATGTAACATTTTCTA+TGG | + | chr8_4:19655005-19655024 | None:intergenic | 25.0% |
| !! | GTTTGTTGAATTCATTAATG+TGG | + | chr8_4:19655541-19655560 | None:intergenic | 25.0% |
| ! | TTCATGTGAATGTATATAAG+AGG | - | chr8_4:19655775-19655794 | Msa1317940:intron | 25.0% |
| ! | AGATATAAAACTAGTGTGAT+TGG | + | chr8_4:19655804-19655823 | None:intergenic | 25.0% |
| ! | AGATAAAATACAGAAAGAAC+AGG | + | chr8_4:19656145-19656164 | None:intergenic | 25.0% |
| ! | AAAAGTTAATTAACAGGAAG+GGG | + | chr8_4:19656239-19656258 | None:intergenic | 25.0% |
| ! | GAAAAGTTAATTAACAGGAA+GGG | + | chr8_4:19656240-19656259 | None:intergenic | 25.0% |
| ! | TGAAAAGTTAATTAACAGGA+AGG | + | chr8_4:19656241-19656260 | None:intergenic | 25.0% |
| ! | ACAGTGAAAAGTTAATTAAC+AGG | + | chr8_4:19656245-19656264 | None:intergenic | 25.0% |
| ! | AGATTACATTAGGAAATCAA+TGG | + | chr8_4:19656278-19656297 | None:intergenic | 25.0% |
| !! | TAACTTTCTTTTGAATTGTG+TGG | - | chr8_4:19656308-19656327 | Msa1317940:five_prime_UTR | 25.0% |
| GCAACTGAAAGAAGTAAAAT+TGG | + | chr8_4:19652581-19652600 | None:intergenic | 30.0% | |
| TAGGATGATGAGTGATTATA+AGG | - | chr8_4:19652874-19652893 | Msa1317940:CDS | 30.0% | |
| ! | GATTTCCCTTTTGCTTATTA+TGG | - | chr8_4:19653273-19653292 | Msa1317940:intron | 30.0% |
| AGAGTGAAAATCAGAAACTT+AGG | + | chr8_4:19653406-19653425 | None:intergenic | 30.0% | |
| !!! | ATGTTTTTTCATCCATGTGA+TGG | - | chr8_4:19653523-19653542 | Msa1317940:intron | 30.0% |
| CATACATCTCATCAACATTT+GGG | + | chr8_4:19653656-19653675 | None:intergenic | 30.0% | |
| ! | TGATCTGTCTTTAACCATTT+TGG | - | chr8_4:19653842-19653861 | Msa1317940:intron | 30.0% |
| AAAAACGTATTTCGCCAAAA+TGG | + | chr8_4:19653859-19653878 | None:intergenic | 30.0% | |
| AGATCTTGTCAATGTATTTG+AGG | - | chr8_4:19653945-19653964 | Msa1317940:intron | 30.0% | |
| TTAACCCTTTGTTCATAAGT+AGG | + | chr8_4:19654053-19654072 | None:intergenic | 30.0% | |
| ACTTATGAACAAAGGGTTAA+AGG | - | chr8_4:19654053-19654072 | Msa1317940:intron | 30.0% | |
| !! | GCATTTTGACGAGATAATAA+AGG | + | chr8_4:19654285-19654304 | None:intergenic | 30.0% |
| !! | CTTTTCTGTTTAGAATGTGA+TGG | + | chr8_4:19654600-19654619 | None:intergenic | 30.0% |
| TCACATTCTAAACAGAAAAG+TGG | - | chr8_4:19654600-19654619 | Msa1317940:intron | 30.0% | |
| CACATTCTAAACAGAAAAGT+GGG | - | chr8_4:19654601-19654620 | Msa1317940:intron | 30.0% | |
| ACATTCTAAACAGAAAAGTG+GGG | - | chr8_4:19654602-19654621 | Msa1317940:intron | 30.0% | |
| GATACATACTTGTAGATAGA+CGG | - | chr8_4:19654653-19654672 | Msa1317940:intron | 30.0% | |
| ATACATACTTGTAGATAGAC+GGG | - | chr8_4:19654654-19654673 | Msa1317940:intron | 30.0% | |
| !! | AGGTTAGTTTCATTGATGTA+AGG | + | chr8_4:19654783-19654802 | None:intergenic | 30.0% |
| ! | CATTTTCTATGGATAAGGAA+TGG | + | chr8_4:19654994-19655013 | None:intergenic | 30.0% |
| TTCATACATACACATTTCAG+TGG | + | chr8_4:19655154-19655173 | None:intergenic | 30.0% | |
| ACTTACCTAAATCTCAACTA+TGG | + | chr8_4:19655248-19655267 | None:intergenic | 30.0% | |
| AACATATTGTACTTGATCTC+AGG | + | chr8_4:19655381-19655400 | None:intergenic | 30.0% | |
| ATCAAAGTCTGTAACCAATT+GGG | - | chr8_4:19655459-19655478 | Msa1317940:intron | 30.0% | |
| CATATTCAAACAAACCCAAT+TGG | + | chr8_4:19655476-19655495 | None:intergenic | 30.0% | |
| ! | CAATTGGGTTTGTTTGAATA+TGG | - | chr8_4:19655474-19655493 | Msa1317940:intron | 30.0% |
| ! | TGTAATCTTGTTTGTGAAAG+TGG | - | chr8_4:19655734-19655753 | Msa1317940:intron | 30.0% |
| ATATGATTCTAGTGATGAAC+AGG | - | chr8_4:19656076-19656095 | Msa1317940:intron | 30.0% | |
| TTCATTCAAATGAATGTGCT+TGG | - | chr8_4:19656193-19656212 | Msa1317940:five_prime_UTR | 30.0% | |
| AAGACAGCAAGCAGAAAATT+AGG | + | chr8_4:19652556-19652575 | None:intergenic | 35.0% | |
| TCTTTCAGTTGCACAAGTAA+AGG | - | chr8_4:19652589-19652608 | Msa1317940:three_prime_UTR | 35.0% | |
| GATGATGAGTGATTATAAGG+TGG | - | chr8_4:19652877-19652896 | Msa1317940:CDS | 35.0% | |
| AAGGTGGAAATGATTAACGA+TGG | - | chr8_4:19652893-19652912 | Msa1317940:CDS | 35.0% | |
| GAAGGGAAATTACTTTCACT+GGG | + | chr8_4:19652950-19652969 | None:intergenic | 35.0% | |
| AGAAGGGAAATTACTTTCAC+TGG | + | chr8_4:19652951-19652970 | None:intergenic | 35.0% | |
| GACTTATAAGGATAAGCATC+CGG | + | chr8_4:19653600-19653619 | None:intergenic | 35.0% | |
| CCTATTGAAGGAGACTTATA+AGG | + | chr8_4:19653612-19653631 | None:intergenic | 35.0% | |
| CCTTATAAGTCTCCTTCAAT+AGG | - | chr8_4:19653609-19653628 | Msa1317940:intron | 35.0% | |
| GCATACATCTCATCAACATT+TGG | + | chr8_4:19653657-19653676 | None:intergenic | 35.0% | |
| ! | GATTACGATAATTTCAGGTC+AGG | - | chr8_4:19653769-19653788 | Msa1317940:intron | 35.0% |
| CTTGATGTTATCAATCAGAC+TGG | - | chr8_4:19653802-19653821 | Msa1317940:intron | 35.0% | |
| ACAGATCATTACCAAACATG+GGG | + | chr8_4:19653830-19653849 | None:intergenic | 35.0% | |
| GACAGATCATTACCAAACAT+GGG | + | chr8_4:19653831-19653850 | None:intergenic | 35.0% | |
| AGACAGATCATTACCAAACA+TGG | + | chr8_4:19653832-19653851 | None:intergenic | 35.0% | |
| ! | CAAAAGACGAAATTCTAGAG+AGG | + | chr8_4:19654093-19654112 | None:intergenic | 35.0% |
| !!! | GTACCATGGGTTTTAATTTG+TGG | - | chr8_4:19654247-19654266 | Msa1317940:intron | 35.0% |
| CAACCACAAATTAAAACCCA+TGG | + | chr8_4:19654253-19654272 | None:intergenic | 35.0% | |
| ! | GGGCTTATATGGTATTTTCT+AGG | - | chr8_4:19654622-19654641 | Msa1317940:intron | 35.0% |
| ! | TGGTATTTTCTAGGTGCATA+TGG | - | chr8_4:19654631-19654650 | Msa1317940:intron | 35.0% |
| CTACTAACAAAGTCAATGGA+AGG | + | chr8_4:19654803-19654822 | None:intergenic | 35.0% | |
| TAACTCAAGGGTTACTCATA+AGG | - | chr8_4:19654833-19654852 | Msa1317940:intron | 35.0% | |
| CTGGAGCGAAAAATCAAAAT+CGG | + | chr8_4:19654902-19654921 | None:intergenic | 35.0% | |
| GTTACATGTTCTTTGCCATT+CGG | - | chr8_4:19655013-19655032 | Msa1317940:intron | 35.0% | |
| TGACTCTAACACTATTGATG+TGG | - | chr8_4:19655090-19655109 | Msa1317940:CDS | 35.0% | |
| GACTCTAACACTATTGATGT+GGG | - | chr8_4:19655091-19655110 | Msa1317940:CDS | 35.0% | |
| TCAAGCCATAGTTGAGATTT+AGG | - | chr8_4:19655240-19655259 | Msa1317940:intron | 35.0% | |
| GAGATTTAGGTAAGTGTTCA+AGG | - | chr8_4:19655253-19655272 | Msa1317940:CDS | 35.0% | |
| !! | CACCTAATTGAGTTGAACTA+TGG | - | chr8_4:19655310-19655329 | Msa1317940:CDS | 35.0% |
| AGCCATAGTTCAACTCAATT+AGG | + | chr8_4:19655315-19655334 | None:intergenic | 35.0% | |
| !! | ATTGAGTTGAACTATGGCTA+CGG | - | chr8_4:19655316-19655335 | Msa1317940:CDS | 35.0% |
| CATCAAAGTCTGTAACCAAT+TGG | - | chr8_4:19655458-19655477 | Msa1317940:intron | 35.0% | |
| TGAATTCATTAATGTGGGCA+TGG | + | chr8_4:19655535-19655554 | None:intergenic | 35.0% | |
| CAGGTGATACAATGTTAAAG+AGG | - | chr8_4:19655585-19655604 | Msa1317940:intron | 35.0% | |
| TAAAGAGGAGTAGATGTTGT+TGG | - | chr8_4:19655600-19655619 | Msa1317940:intron | 35.0% | |
| AAATGAATGTGCTTGGATGT+TGG | - | chr8_4:19656200-19656219 | Msa1317940:five_prime_UTR | 35.0% | |
| ATTAAGCTGTTAGCATAGTG+TGG | - | chr8_4:19656331-19656350 | Msa1317940:five_prime_UTR | 35.0% | |
| TTAAGGGAAGAAGAGGATTG+AGG | + | chr8_4:19652620-19652639 | None:intergenic | 40.0% | |
| GAGAGAATTAAGGGAAGAAG+AGG | + | chr8_4:19652627-19652646 | None:intergenic | 40.0% | |
| GAGGAGAGAGAGAGAATTAA+GGG | + | chr8_4:19652636-19652655 | None:intergenic | 40.0% | |
| AGAGGAGAGAGAGAGAATTA+AGG | + | chr8_4:19652637-19652656 | None:intergenic | 40.0% | |
| ! | TTGCTTGGTGAAGACATGTT+TGG | + | chr8_4:19652724-19652743 | None:intergenic | 40.0% |
| GTCAAATTCAGTGACCCAAT+TGG | + | chr8_4:19652828-19652847 | None:intergenic | 40.0% | |
| TTTCACTGGGTCCATGAAAA+TGG | + | chr8_4:19652937-19652956 | None:intergenic | 40.0% | |
| GAAAGTAAGAGTTGAGCTAC+CGG | - | chr8_4:19653578-19653597 | Msa1317940:intron | 40.0% | |
| ! | CGATAATTTCAGGTCAGGAT+CGG | - | chr8_4:19653774-19653793 | Msa1317940:intron | 40.0% |
| !! | ATTCAAGGGTCTGATGGATT+GGG | + | chr8_4:19653997-19654016 | None:intergenic | 40.0% |
| ACCGACCTACTTATGAACAA+AGG | - | chr8_4:19654045-19654064 | Msa1317940:intron | 40.0% | |
| CCCTTTGTTCATAAGTAGGT+CGG | + | chr8_4:19654049-19654068 | None:intergenic | 40.0% | |
| CCGACCTACTTATGAACAAA+GGG | - | chr8_4:19654046-19654065 | Msa1317940:intron | 40.0% | |
| CACATGATTGCTATGTCTCT+TGG | - | chr8_4:19654129-19654148 | Msa1317940:intron | 40.0% | |
| TGACCTAAATGTTAGACCTC+AGG | - | chr8_4:19654213-19654232 | Msa1317940:intron | 40.0% | |
| GACCTAAATGTTAGACCTCA+GGG | - | chr8_4:19654214-19654233 | Msa1317940:intron | 40.0% | |
| ACCTTCAAATATTGCAGTCG+CGG | - | chr8_4:19654345-19654364 | Msa1317940:intron | 40.0% | |
| ! | TGCAATTTGAAACCATGGCA+TGG | - | chr8_4:19654370-19654389 | Msa1317940:intron | 40.0% |
| ! | GAATGTGATGGAATCACATG+AGG | + | chr8_4:19654588-19654607 | None:intergenic | 40.0% |
| ACAGAAAAGTGGGGCTTATA+TGG | - | chr8_4:19654611-19654630 | Msa1317940:intron | 40.0% | |
| ! | AGGTTCAATCTTGTTATCCC+TGG | - | chr8_4:19654853-19654872 | Msa1317940:CDS | 40.0% |
| ! | GGTTCAATCTTGTTATCCCT+GGG | - | chr8_4:19654854-19654873 | Msa1317940:CDS | 40.0% |
| TAAGTGTTCAAGGTGTGTCT+GGG | - | chr8_4:19655263-19655282 | Msa1317940:CDS | 40.0% | |
| AGCTTTGCAAGAGAAGTTTG+AGG | - | chr8_4:19655426-19655445 | Msa1317940:intron | 40.0% | |
| ATGACTCGAAATGGAGATGA+GGG | - | chr8_4:19655503-19655522 | Msa1317940:intron | 40.0% | |
| ACCAAAGTCTTGCAATTCTC+TGG | - | chr8_4:19655636-19655655 | Msa1317940:intron | 40.0% | |
| ACCAGAGAATTGCAAGACTT+TGG | + | chr8_4:19655640-19655659 | None:intergenic | 40.0% | |
| AGTTGTGAGTGTCTTGTGAA+TGG | - | chr8_4:19655690-19655709 | Msa1317940:intron | 40.0% | |
| GTTGTGAGTGTCTTGTGAAT+GGG | - | chr8_4:19655691-19655710 | Msa1317940:intron | 40.0% | |
| ! | TCTCACAGTACTCTGAAAGT+TGG | + | chr8_4:19655977-19655996 | None:intergenic | 40.0% |
| ATCACTGGATTTCTCTTCTG+TGG | + | chr8_4:19656030-19656049 | None:intergenic | 40.0% | |
| GAAATCCAGTGATGAAGATG+AGG | - | chr8_4:19656037-19656056 | Msa1317940:intron | 40.0% | |
| TGATTCTAGTGATGAACAGG+TGG | - | chr8_4:19656079-19656098 | Msa1317940:intron | 40.0% | |
| TGCATACACAAGGCAAACTA+GGG | + | chr8_4:19656119-19656138 | None:intergenic | 40.0% | |
| TTGCATACACAAGGCAAACT+AGG | + | chr8_4:19656120-19656139 | None:intergenic | 40.0% | |
| AATGTGCTTGGATGTTGGTA+GGG | - | chr8_4:19656205-19656224 | Msa1317940:five_prime_UTR | 40.0% | |
| CTCATGTCAGGTCCTTATCA+AGG | - | chr8_4:19653546-19653565 | Msa1317940:intron | 45.0% | |
| ATGTCAGGTCCTTATCAAGG+AGG | - | chr8_4:19653549-19653568 | Msa1317940:intron | 45.0% | |
| TTCCACACACCTCCTTGATA+AGG | + | chr8_4:19653561-19653580 | None:intergenic | 45.0% | |
| TTGGGATACAGAAGGAGTTG+TGG | + | chr8_4:19653979-19653998 | None:intergenic | 45.0% | |
| !! | CTGATGGATTGGGATACAGA+AGG | + | chr8_4:19653987-19654006 | None:intergenic | 45.0% |
| ! | CATTCAAGGGTCTGATGGAT+TGG | + | chr8_4:19653998-19654017 | None:intergenic | 45.0% |
| CAATCCATCAGACCCTTGAA+TGG | - | chr8_4:19653996-19654015 | Msa1317940:intron | 45.0% | |
| TTCTCCATTCAAGGGTCTGA+TGG | + | chr8_4:19654003-19654022 | None:intergenic | 45.0% | |
| CACCCTGAGGTCTAACATTT+AGG | + | chr8_4:19654219-19654238 | None:intergenic | 45.0% | |
| CTAAATGTTAGACCTCAGGG+TGG | - | chr8_4:19654217-19654236 | Msa1317940:intron | 45.0% | |
| GCAACTGCAATTGACTGCAT+CGG | + | chr8_4:19654310-19654329 | None:intergenic | 45.0% | |
| TCCGCGACTGCAATATTTGA+AGG | + | chr8_4:19654349-19654368 | None:intergenic | 45.0% | |
| ! | CGGACTGCAATTTGAAACCA+TGG | - | chr8_4:19654365-19654384 | Msa1317940:intron | 45.0% |
| TGTCGCCTAACTTTGCTAGT+CGG | - | chr8_4:19654738-19654757 | Msa1317940:intron | 45.0% | |
| TAGCGAGAGAGAATAACCCA+GGG | + | chr8_4:19654873-19654892 | None:intergenic | 45.0% | |
| TTAGCGAGAGAGAATAACCC+AGG | + | chr8_4:19654874-19654893 | None:intergenic | 45.0% | |
| ! | GGAATGGACTTGACTGAACA+AGG | + | chr8_4:19654978-19654997 | None:intergenic | 45.0% |
| TTCTTTGCCATTCGGTCTTC+TGG | - | chr8_4:19655021-19655040 | Msa1317940:intron | 45.0% | |
| ACACATACCAGAAGACCGAA+TGG | + | chr8_4:19655031-19655050 | None:intergenic | 45.0% | |
| TGCTTCGTGTGTGCATTCAT+AGG | + | chr8_4:19655064-19655083 | None:intergenic | 45.0% | |
| ! | GTGGGCAGTGTCTAAAATGT+AGG | - | chr8_4:19655109-19655128 | Msa1317940:intron | 45.0% |
| GTAAGTGTTCAAGGTGTGTC+TGG | - | chr8_4:19655262-19655281 | Msa1317940:CDS | 45.0% | |
| AAGTGTTCAAGGTGTGTCTG+GGG | - | chr8_4:19655264-19655283 | Msa1317940:CDS | 45.0% | |
| TGGAGTTGCATGACTCGAAA+TGG | - | chr8_4:19655494-19655513 | Msa1317940:intron | 45.0% | |
| CATGACTCGAAATGGAGATG+AGG | - | chr8_4:19655502-19655521 | Msa1317940:intron | 45.0% | |
| TATGCGAAGCCAGAAGACAT+TGG | - | chr8_4:19655999-19656018 | Msa1317940:CDS | 45.0% | |
| TAGCTCCTCATCTTCATCAC+TGG | + | chr8_4:19656045-19656064 | None:intergenic | 45.0% | |
| GCATACACAAGGCAAACTAG+GGG | + | chr8_4:19656118-19656137 | None:intergenic | 45.0% | |
| GAACAGGACTTGCATACACA+AGG | + | chr8_4:19656129-19656148 | None:intergenic | 45.0% | |
| GAATGTGCTTGGATGTTGGT+AGG | - | chr8_4:19656204-19656223 | Msa1317940:five_prime_UTR | 45.0% | |
| ! | ATGTGCTTGGATGTTGGTAG+GGG | - | chr8_4:19656206-19656225 | Msa1317940:five_prime_UTR | 45.0% |
| !!! | AAAAAAATATTTTTTTCATA+AGG | + | chr8_4:19653005-19653024 | None:intergenic | 5.0% |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr8_4:19652653-19652672 | None:intergenic | 50.0% | |
| TCCATGTGATGGCTCATGTC+AGG | - | chr8_4:19653534-19653553 | Msa1317940:intron | 50.0% | |
| ACCTGACATGAGCCATCACA+TGG | + | chr8_4:19653538-19653557 | None:intergenic | 50.0% | |
| ! | GTCCTTATCAAGGAGGTGTG+TGG | - | chr8_4:19653556-19653575 | Msa1317940:intron | 50.0% |
| ACCCTTGAATGGAGAAGCTG+CGG | - | chr8_4:19654007-19654026 | Msa1317940:intron | 50.0% | |
| ATGTTAGACCTCAGGGTGGT+AGG | - | chr8_4:19654221-19654240 | Msa1317940:intron | 50.0% | |
| CTGCATAGTAGTCCATGCCA+TGG | + | chr8_4:19654385-19654404 | None:intergenic | 50.0% | |
| GCTTGATACTCGACAGACAC+AGG | + | chr8_4:19655226-19655245 | None:intergenic | 50.0% | |
| TATGGCTACGGCTAATGACG+TGG | - | chr8_4:19655328-19655347 | Msa1317940:CDS | 50.0% | |
| TCTAGTGATGAACAGGTGGC+TGG | - | chr8_4:19656083-19656102 | Msa1317940:intron | 50.0% | |
| ACCAAGCAAGCGACGAGAGA+TGG | - | chr8_4:19652735-19652754 | Msa1317940:three_prime_UTR | 55.0% | |
| TCCATCTCTCGTCGCTTGCT+TGG | + | chr8_4:19652739-19652758 | None:intergenic | 55.0% | |
| TCAGACTGGAGCCCCATGTT+TGG | - | chr8_4:19653816-19653835 | Msa1317940:intron | 55.0% | |
| GCCGCAGCTTCTCCATTCAA+GGG | + | chr8_4:19654011-19654030 | None:intergenic | 55.0% | |
| AGCCGCAGCTTCTCCATTCA+AGG | + | chr8_4:19654012-19654031 | None:intergenic | 55.0% | |
| GGCAGCCGACTAGCAAAGTT+AGG | + | chr8_4:19654746-19654765 | None:intergenic | 55.0% | |
| GTGGCAGCTCCAATGTCTTC+TGG | + | chr8_4:19656011-19656030 | None:intergenic | 55.0% | |
| AGGGTGGTAGGCGTGTACCA+TGG | - | chr8_4:19654233-19654252 | Msa1317940:intron | 60.0% | |
| GGGTGGTAGGCGTGTACCAT+GGG | - | chr8_4:19654234-19654253 | Msa1317940:intron | 60.0% | |
| GGTACACGCCTACCACCCTG+AGG | + | chr8_4:19654232-19654251 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 19652543 | 19656369 | 19652543 | ID=Msa1317940;Name=Msa1317940 |
| chr8_4 | mRNA | 19652543 | 19656369 | 19652543 | ID=Msa1317940-mRNA-1;Parent=Msa1317940;Name=Msa1317940-mRNA-1;_AED=0.13;_eAED=0.13;_QI=184|0.8|0.66|1|0.8|0.83|6|248|176 |
| chr8_4 | exon | 19652543 | 19652927 | 19652543 | ID=Msa1317940-mRNA-1:exon:7232;Parent=Msa1317940-mRNA-1 |
| chr8_4 | exon | 19654838 | 19654945 | 19654838 | ID=Msa1317940-mRNA-1:exon:7231;Parent=Msa1317940-mRNA-1 |
| chr8_4 | exon | 19655080 | 19655126 | 19655080 | ID=Msa1317940-mRNA-1:exon:7230;Parent=Msa1317940-mRNA-1 |
| chr8_4 | exon | 19655242 | 19655356 | 19655242 | ID=Msa1317940-mRNA-1:exon:7229;Parent=Msa1317940-mRNA-1 |
| chr8_4 | exon | 19655956 | 19656035 | 19655956 | ID=Msa1317940-mRNA-1:exon:7228;Parent=Msa1317940-mRNA-1 |
| chr8_4 | exon | 19656142 | 19656369 | 19656142 | ID=Msa1317940-mRNA-1:exon:7227;Parent=Msa1317940-mRNA-1 |
| chr8_4 | five_prime_UTR | 19656186 | 19656369 | 19656186 | ID=Msa1317940-mRNA-1:five_prime_utr;Parent=Msa1317940-mRNA-1 |
| chr8_4 | CDS | 19656142 | 19656185 | 19656142 | ID=Msa1317940-mRNA-1:cds;Parent=Msa1317940-mRNA-1 |
| chr8_4 | CDS | 19655956 | 19656035 | 19655956 | ID=Msa1317940-mRNA-1:cds;Parent=Msa1317940-mRNA-1 |
| chr8_4 | CDS | 19655242 | 19655356 | 19655242 | ID=Msa1317940-mRNA-1:cds;Parent=Msa1317940-mRNA-1 |
| chr8_4 | CDS | 19655080 | 19655126 | 19655080 | ID=Msa1317940-mRNA-1:cds;Parent=Msa1317940-mRNA-1 |
| chr8_4 | CDS | 19654838 | 19654945 | 19654838 | ID=Msa1317940-mRNA-1:cds;Parent=Msa1317940-mRNA-1 |
| chr8_4 | CDS | 19652791 | 19652927 | 19652791 | ID=Msa1317940-mRNA-1:cds;Parent=Msa1317940-mRNA-1 |
| chr8_4 | three_prime_UTR | 19652543 | 19652790 | 19652543 | ID=Msa1317940-mRNA-1:three_prime_utr;Parent=Msa1317940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
