AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0934850


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0934850 MtrunA17_Chr6g0450801 83.705 448 22 2 1 397 1 448 0.0 761
Msa0934850 MtrunA17_Chr7g0223251 45.098 102 45 2 143 233 184 285 1.98e-20 91.7
Msa0934850 MtrunA17_Chr1g0210041 24.314 255 137 5 44 246 1 251 1.82e-14 73.6
Msa0934850 MtrunA17_Chr8g0378251 23.723 274 147 6 44 259 1 270 2.03e-14 73.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0934850 AT5G40280.1 50.228 438 166 3 8 394 42 478 8.02e-146 423
Msa0934850 AT5G40280.2 46.809 470 166 4 8 394 42 510 1.17e-138 405
Msa0934850 AT2G39550.1 26.855 283 119 8 37 233 25 305 8.21e-18 84.7
Msa0934850 AT5G12210.2 31.061 132 79 2 115 246 139 258 1.21e-13 71.6
Msa0934850 AT5G12210.1 31.061 132 79 2 115 246 140 259 1.28e-13 71.6
Msa0934850 AT3G12070.2 31.579 133 78 3 115 246 135 255 2.32e-12 67.8
Msa0934850 AT3G12070.1 31.579 133 78 3 115 246 135 255 2.32e-12 67.8
Msa0934850 AT3G12070.3 31.579 133 78 3 115 246 135 255 2.32e-12 67.8

Find 134 sgRNAs with CRISPR-Local

Find 528 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCTCTCTTTAATGTTATTT+TGG 0.096185 6_3:+4938346 Msa0934850:CDS
GTTACACCGTCGGTGCTTTC+TGG 0.125204 6_3:-4931065 None:intergenic
TTAAATTAATCCAACGATTA+TGG 0.176255 6_3:-4930271 None:intergenic
AGGTAAGGAGTGTGGATTTC+AGG 0.186356 6_3:+4937408 Msa0934850:CDS
ACCTACCATCACGCCTGATA+TGG 0.202705 6_3:-4937685 None:intergenic
TGTGTCCCTCTTGGTCTAAT+TGG 0.223646 6_3:-4930338 None:intergenic
GTCGACCGTGGCTGTGTTAC+TGG 0.250941 6_3:+4932566 Msa0934850:intron
GTCAATACTCTTATTACTTT+GGG 0.276862 6_3:+4934630 Msa0934850:CDS
AAGCTTTGGCATCAATTAAT+AGG 0.280924 6_3:+4934661 Msa0934850:CDS
GAAAGCAATTATTGTCGTTC+TGG 0.299864 6_3:+4930500 Msa0934850:five_prime_UTR
TTGGAACATCACATAGAAAT+AGG 0.303771 6_3:+4938474 Msa0934850:three_prime_UTR
TTCAGGATTGGGTTGTATTT+CGG 0.306833 6_3:+4937383 Msa0934850:intron
TTAGGTAATGGTGGAGAATC+TGG 0.311383 6_3:-4938281 None:intergenic
TCAGGGGAGAACGAATAAAT+TGG 0.339111 6_3:+4937426 Msa0934850:CDS
GTGCGTTGCAGTTTGCTTTG+CGG 0.343195 6_3:+4930394 Msa0934850:five_prime_UTR
GCCTGAAGAAAAGGAAAGTT+TGG 0.344799 6_3:+4937637 Msa0934850:CDS
TATTCATGCAATTGCTTTGT+TGG 0.345450 6_3:+4932591 Msa0934850:CDS
TTGAAGACAATAGGCATATA+CGG 0.345988 6_3:+4930548 Msa0934850:five_prime_UTR
GTCATGCAACTTCCCATATC+AGG 0.346652 6_3:+4937672 Msa0934850:CDS
ATTCTCAGAGATAAATTGTA+TGG 0.348690 6_3:+4934794 Msa0934850:intron
TGCAGTTTGCTTTGCGGCGA+CGG 0.351970 6_3:+4930400 Msa0934850:five_prime_UTR
GAAGCTCATGAATTCTTTAG+TGG 0.362151 6_3:+4938380 Msa0934850:CDS
ACATATGAGGGAGGCATTGC+TGG 0.364574 6_3:+4937037 Msa0934850:CDS
AGTCAATACTCTTATTACTT+TGG 0.366924 6_3:+4934629 Msa0934850:CDS
GACAATAATTGCTTTCTGTT+GGG 0.379629 6_3:-4930493 None:intergenic
GGCGGATGAAACAGCCAAAT+GGG 0.402834 6_3:+4934825 Msa0934850:CDS
GTTGATTTATTGAAGACAAT+AGG 0.403279 6_3:+4930539 Msa0934850:five_prime_UTR
ATTCTTTAGTGGTTTGTAAC+TGG 0.404343 6_3:+4938391 Msa0934850:exon
GGAGGCATTGCTGGTGAGCC+TGG 0.410790 6_3:+4937046 Msa0934850:CDS
CGACAATAATTGCTTTCTGT+TGG 0.413897 6_3:-4930494 None:intergenic
ATTCATGCAATTGCTTTGTT+GGG 0.415981 6_3:+4932592 Msa0934850:CDS
TGGATGGATGCTACTCGTTT+TGG 0.416129 6_3:+4937449 Msa0934850:CDS
ATCTGATTCGCCTGAAGAAA+AGG 0.419725 6_3:+4937628 Msa0934850:CDS
ATGGATGGGTTCTAAGAGAT+TGG 0.422639 6_3:-4938324 None:intergenic
GCAGTTTGCTTTGCGGCGAC+GGG 0.424552 6_3:+4930401 Msa0934850:five_prime_UTR
TATGTTGATTGTGTCCCTCT+TGG 0.429703 6_3:-4930347 None:intergenic
TTTGGGTGGTGATAAAGCTT+TGG 0.433407 6_3:+4934647 Msa0934850:CDS
TTGCAGCTGTCAAACATATG+AGG 0.438191 6_3:+4937024 Msa0934850:intron
CCATTACCTAAGGTAGTAAT+GGG 0.438990 6_3:+4938293 Msa0934850:CDS
CATTCAACAGATAGAGCTCT+TGG 0.447382 6_3:-4938431 None:intergenic
CACTCGTGTTACTGTTTAAG+TGG 0.449126 6_3:+4938224 Msa0934850:CDS
TAAGGGACAAACCGGGTAAA+CGG 0.449425 6_3:+4938189 Msa0934850:CDS
TTTGATTTGGCCCTTCCAAA+GGG 0.450569 6_3:+4938567 Msa0934850:three_prime_UTR
GGCGCTTGGACAAACTATAC+TGG 0.457392 6_3:-4938259 None:intergenic
ATTTGATTTGGCCCTTCCAA+AGG 0.458063 6_3:+4938566 Msa0934850:three_prime_UTR
CCTACCATCACGCCTGATAT+GGG 0.459846 6_3:-4937684 None:intergenic
TAAGGACCCATTACTACCTT+AGG 0.464021 6_3:-4938299 None:intergenic
CGGCGGATGAAACAGCCAAA+TGG 0.466773 6_3:+4934824 Msa0934850:CDS
AACATTAAAGAGAGGATGGA+TGG 0.472767 6_3:-4938339 None:intergenic
ACCATTACCTAAGGTAGTAA+TGG 0.477052 6_3:+4938292 Msa0934850:CDS
CGGTGGACTAAGGGACAAAC+CGG 0.477303 6_3:+4938181 Msa0934850:CDS
ATCTGTTATTGACGAACAAA+TGG 0.482532 6_3:+4937580 Msa0934850:CDS
GATTGGTGAGGCTAATCGCT+TGG 0.486971 6_3:+4937259 Msa0934850:CDS
GGTAAGGAGTGTGGATTTCA+GGG 0.490322 6_3:+4937409 Msa0934850:CDS
AGGAGCAAGACGGTGGACTA+AGG 0.494162 6_3:+4938171 Msa0934850:intron
TGCTGGTGAGCCTGGTTCTG+AGG 0.495541 6_3:+4937054 Msa0934850:CDS
GTGAATCTTATGAACTTGCT+TGG 0.495967 6_3:+4938531 Msa0934850:three_prime_UTR
TACATGAGGGATTGAGCGTT+AGG 0.496616 6_3:-4931201 None:intergenic
CATTGCAGCTAATCCACAAA+AGG 0.500677 6_3:-4937231 None:intergenic
CACAATCAACATAGAGGTTG+TGG 0.501259 6_3:+4930357 Msa0934850:five_prime_UTR
TACTAGTATTCCATAATCGT+TGG 0.503555 6_3:+4930261 Msa0934850:five_prime_UTR
GGTTGTATTTCGGCAAGGTA+AGG 0.503598 6_3:+4937393 Msa0934850:CDS
GTTGTCTCCGCCGCAGATGA+AGG 0.504108 6_3:-4931096 None:intergenic
GTTTAATCTATTGCTGAAGC+AGG 0.516286 6_3:-4930471 None:intergenic
TGGTGGAGAATCTGGGCGCT+TGG 0.523920 6_3:-4938273 None:intergenic
CCCATTACTACCTTAGGTAA+TGG 0.524357 6_3:-4938293 None:intergenic
CGGTGAGTCAAAGAGATCAA+TGG 0.527422 6_3:+4931127 Msa0934850:CDS
TAGTGATCCCTCCGTTTACC+CGG 0.528287 6_3:-4938200 None:intergenic
GAGCCTGGTTCTGAGGCTCA+TGG 0.530621 6_3:+4937061 Msa0934850:CDS
AATACTCTTATTACTTTGGG+TGG 0.533313 6_3:+4934633 Msa0934850:CDS
AAAATGTAACATAAATGCAT+TGG 0.536547 6_3:+4938455 Msa0934850:three_prime_UTR
AGTTGCATGACTTGATGCTC+CGG 0.543181 6_3:-4937660 None:intergenic
TCTAAAGGACTTCGCCATCT+CGG 0.543236 6_3:+4932411 Msa0934850:CDS
CCACCATGAGCCTCAGAACC+AGG 0.543414 6_3:-4937064 None:intergenic
TTATTGTCGTTCTGGAAAAG+TGG 0.543544 6_3:+4930508 Msa0934850:five_prime_UTR
AAATAACATTAAAGAGAGGA+TGG 0.544740 6_3:-4938343 None:intergenic
CACATCGAGTATCTTTCTAA+AGG 0.548427 6_3:+4932396 Msa0934850:CDS
GAAGAAAAGGAAAGTTTGGC+CGG 0.548713 6_3:+4937641 Msa0934850:CDS
TAGGTAATGGTGGAGAATCT+GGG 0.551089 6_3:-4938280 None:intergenic
TCTAAACCAATTAGACCAAG+AGG 0.558216 6_3:+4930332 Msa0934850:five_prime_UTR
TTCTCAGAGATAAATTGTAT+GGG 0.561141 6_3:+4934795 Msa0934850:intron
GGTTCTAAGAGATTGGAGTA+AGG 0.574336 6_3:-4938317 None:intergenic
AGATTCTCCACCATTACCTA+AGG 0.575023 6_3:+4938283 Msa0934850:CDS
GGAGCAAGACGGTGGACTAA+GGG 0.576325 6_3:+4938172 Msa0934850:intron
ATCAACATAGAGGTTGTGGT+TGG 0.576873 6_3:+4930361 Msa0934850:five_prime_UTR
GGACAAACCGGGTAAACGGA+GGG 0.577579 6_3:+4938193 Msa0934850:CDS
TGATCTCTTTGACTCACCGT+CGG 0.581992 6_3:-4931123 None:intergenic
ATGGAATACTAGTATACTAC+CGG 0.584324 6_3:-4930252 None:intergenic
TGCAGCTGTCAAACATATGA+GGG 0.587051 6_3:+4937025 Msa0934850:intron
ATGAGGGATTGAGCGTTAGG+AGG 0.587858 6_3:-4931198 None:intergenic
GATTGGGTTGTATTTCGGCA+AGG 0.590826 6_3:+4937388 Msa0934850:CDS
GTGGTTTGTAACTGGTGACA+TGG 0.592157 6_3:+4938399 Msa0934850:exon
GGGGAGAACGAATAAATTGG+TGG 0.592201 6_3:+4937429 Msa0934850:CDS
TGATTTGGCCCTTCCAAAGG+GGG 0.593092 6_3:+4938569 Msa0934850:three_prime_UTR
AGAACGAATAAATTGGTGGA+TGG 0.594828 6_3:+4937433 Msa0934850:CDS
GCGGATGAAACAGCCAAATG+GGG 0.595698 6_3:+4934826 Msa0934850:CDS
GCATAAGTTGTGGCAAGATG+AGG 0.596253 6_3:-4934603 None:intergenic
TATTGACGAACAAATGGTAG+AGG 0.596337 6_3:+4937586 Msa0934850:CDS
TTTCGGCAAGGTAAGGAGTG+TGG 0.597905 6_3:+4937400 Msa0934850:CDS
CTGGTTCTGAGGCTCATGGT+GGG 0.601092 6_3:+4937065 Msa0934850:CDS
TCGTTCTGGAAAAGTGGCGG+TGG 0.603123 6_3:+4930514 Msa0934850:five_prime_UTR
TGGAAGGGCCAAATCAAATG+AGG 0.606077 6_3:-4938562 None:intergenic
ATAAATTGTATGGGTTTATG+CGG 0.607119 6_3:+4934804 Msa0934850:CDS
CCTGGTTCTGAGGCTCATGG+TGG 0.607455 6_3:+4937064 Msa0934850:CDS
AATTGTATGGGTTTATGCGG+CGG 0.609438 6_3:+4934807 Msa0934850:CDS
AGCACCGACGGTGTAACCGA+TGG 0.609679 6_3:+4931071 Msa0934850:exon
ATTACTACCTTAGGTAATGG+TGG 0.619462 6_3:-4938290 None:intergenic
ACTTCCCATATCAGGCGTGA+TGG 0.619658 6_3:+4937680 Msa0934850:CDS
GCCGCAGATGAAGGTTCCAT+CGG 0.623012 6_3:-4931087 None:intergenic
GGTTCCATCGGTTACACCGT+CGG 0.626891 6_3:-4931075 None:intergenic
ACATTAAAGAGAGGATGGAT+GGG 0.628830 6_3:-4938338 None:intergenic
TCCAAAATAACATTAAAGAG+AGG 0.631636 6_3:-4938347 None:intergenic
ATTGACTGCAGCATAAGTTG+TGG 0.634458 6_3:-4934613 None:intergenic
GGGACAAACCGGGTAAACGG+AGG 0.636900 6_3:+4938192 Msa0934850:CDS
TTGTCGTTCTGGAAAAGTGG+CGG 0.642339 6_3:+4930511 Msa0934850:five_prime_UTR
GAGGGACACAATCAACATAG+AGG 0.648880 6_3:+4930351 Msa0934850:five_prime_UTR
CAACAAACTTGCTGCCATCG+CGG 0.651557 6_3:-4930442 None:intergenic
CGAACAAGATGCAACCGCGA+TGG 0.652940 6_3:+4930428 Msa0934850:five_prime_UTR
ACCGATGGAACCTTCATCTG+CGG 0.654444 6_3:+4931086 Msa0934850:exon
CTAAACCAATTAGACCAAGA+GGG 0.657886 6_3:+4930333 Msa0934850:five_prime_UTR
CGGATGAAACAGCCAAATGG+GGG 0.660719 6_3:+4934827 Msa0934850:CDS
GATGGAACCTTCATCTGCGG+CGG 0.662039 6_3:+4931089 Msa0934850:exon
GGCGGAGACAACATCACCGA+CGG 0.664564 6_3:+4931107 Msa0934850:CDS
GTTTATGGTGCAGTCGACCG+TGG 0.667854 6_3:+4932554 Msa0934850:intron
TCAGTTCCAGAAAGCACCGA+CGG 0.671925 6_3:+4931059 Msa0934850:intron
GAGTCAAAGAGATCAATGGA+TGG 0.682893 6_3:+4931131 Msa0934850:CDS
AGCTGTCAAACATATGAGGG+AGG 0.689606 6_3:+4937028 Msa0934850:intron
TTGATTTGGCCCTTCCAAAG+GGG 0.690905 6_3:+4938568 Msa0934850:three_prime_UTR
TTGATGCAGGAGCAAGACGG+TGG 0.694884 6_3:+4938164 Msa0934850:intron
GGTGGACTAAGGGACAAACC+GGG 0.696032 6_3:+4938182 Msa0934850:CDS
GTAAGGAGTGTGGATTTCAG+GGG 0.704839 6_3:+4937410 Msa0934850:CDS
ATAATCCAGTAACACAGCCA+CGG 0.706640 6_3:-4932571 None:intergenic
AATTCTCTTACAAGTAAACG+AGG 0.723922 6_3:-4937287 None:intergenic
TGATTGATGCAGGAGCAAGA+CGG 0.744961 6_3:+4938161 Msa0934850:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAATTTAAAGTAAAAACATA+TGG + chr6_3:4930286-4930305 Msa0934850:five_prime_UTR 10.0%
!! AATAATAAAAAAAATAGCAT+TGG - chr6_3:4930670-4930689 None:intergenic 10.0%
!! TAAATGTATAAAATGTTAAA+TGG + chr6_3:4930843-4930862 Msa0934850:intron 10.0%
!! ATAAAATTTGAAAACTATTA+TGG - chr6_3:4934508-4934527 None:intergenic 10.0%
!! AGATAAAATAAAATGAATAT+GGG - chr6_3:4934920-4934939 None:intergenic 10.0%
!! AATTGAAATATTAAAATAGT+AGG - chr6_3:4935789-4935808 None:intergenic 10.0%
!!! TTTACTATTTTTTTTTTATC+AGG + chr6_3:4937204-4937223 Msa0934850:intron 10.0%
!!! ATTTTTTATATTTTGTACAT+TGG + chr6_3:4937938-4937957 Msa0934850:intron 10.0%
!! AAAGAAGAAAAAAATTACTT+CGG - chr6_3:4930593-4930612 None:intergenic 15.0%
!! AAAAATATATATTGTTGAAG+AGG - chr6_3:4931865-4931884 None:intergenic 15.0%
!! TATGAAAATAAAAAAAAACC+TGG - chr6_3:4932672-4932691 None:intergenic 15.0%
!!! AATTTTATGAAATGGAAAAA+TGG - chr6_3:4932868-4932887 None:intergenic 15.0%
!! ATTAAGATATAAGGATTAAA+AGG - chr6_3:4933010-4933029 None:intergenic 15.0%
!! AATTTCTTATTGTTAATTGA+AGG - chr6_3:4934884-4934903 None:intergenic 15.0%
!! CAGATAAAATAAAATGAATA+TGG - chr6_3:4934921-4934940 None:intergenic 15.0%
!!! CATATTCATTTTATTTTATC+TGG + chr6_3:4934919-4934938 Msa0934850:intron 15.0%
!!! TATACTAGTTTTTTTTGTTT+TGG + chr6_3:4935371-4935390 Msa0934850:intron 15.0%
!!! ATACTAGTTTTTTTTGTTTT+GGG + chr6_3:4935372-4935391 Msa0934850:intron 15.0%
!! GTTATACTAGTTATTATAAA+TGG + chr6_3:4935396-4935415 Msa0934850:intron 15.0%
!! ATTAATCTTCCTTATTAATT+AGG + chr6_3:4936174-4936193 Msa0934850:intron 15.0%
!! TTAATCTTCCTTATTAATTA+GGG + chr6_3:4936175-4936194 Msa0934850:intron 15.0%
!! GTTTATTATATCATATTATG+TGG - chr6_3:4936245-4936264 None:intergenic 15.0%
!! ATACACAAAATAACAAAAAA+TGG - chr6_3:4936869-4936888 None:intergenic 15.0%
!! ATAAAGATAACTTATCATTA+GGG - chr6_3:4937181-4937200 None:intergenic 15.0%
!! TATAAAGATAACTTATCATT+AGG - chr6_3:4937182-4937201 None:intergenic 15.0%
!! TATTTGAAAAATTTCAATCA+TGG + chr6_3:4937723-4937742 Msa0934850:intron 15.0%
!! AAATGTCAAAAAAACATTAT+TGG + chr6_3:4938497-4938516 Msa0934850:three_prime_UTR 15.0%
!! TTAAATTAATCCAACGATTA+TGG - chr6_3:4930274-4930293 None:intergenic 20.0%
!!! TTAGTTTTCGTTCTTTTTTT+AGG + chr6_3:4930630-4930649 Msa0934850:intron 20.0%
!! TAAAATGTTAAATGGTACAA+AGG + chr6_3:4930851-4930870 Msa0934850:intron 20.0%
!! AAAATGTTAAATGGTACAAA+GGG + chr6_3:4930852-4930871 Msa0934850:intron 20.0%
!!! ATCATGACTTGTATTTTTAA+GGG - chr6_3:4930945-4930964 None:intergenic 20.0%
!!! AATCATGACTTGTATTTTTA+AGG - chr6_3:4930946-4930965 None:intergenic 20.0%
!! TAAAAATACAAGTCATGATT+AGG + chr6_3:4930946-4930965 Msa0934850:intron 20.0%
!!! TAAACATTTGTTAATCTTTC+AGG - chr6_3:4930977-4930996 None:intergenic 20.0%
!! AAAGATTAACAAATGTTTAG+AGG + chr6_3:4930978-4930997 Msa0934850:intron 20.0%
!! CATTAACTGCTATAATTATT+CGG - chr6_3:4931448-4931467 None:intergenic 20.0%
!!! TGTCAAATAAGTTTGTTAAT+AGG + chr6_3:4931595-4931614 Msa0934850:intron 20.0%
!!! TCTCAAAAAAGTTTGTTAAT+AGG + chr6_3:4931711-4931730 Msa0934850:intron 20.0%
!! TAATTGAATGTAACATGTTT+CGG - chr6_3:4931967-4931986 None:intergenic 20.0%
!!! GTCATATAAAGTTTGTTAAT+AGG + chr6_3:4932294-4932313 Msa0934850:intron 20.0%
!!! AAAAAAATGAAGTGTTTTTG+TGG + chr6_3:4932532-4932551 Msa0934850:intron 20.0%
!!! TGGAAACTAATTTTATGAAA+TGG - chr6_3:4932876-4932895 None:intergenic 20.0%
!!! CTGAAACTAATTTTATGAAA+TGG - chr6_3:4932896-4932915 None:intergenic 20.0%
!! AATGTCTACATTAAGATATA+AGG - chr6_3:4933019-4933038 None:intergenic 20.0%
!!! GACATTTGTATATCTATTTT+AGG + chr6_3:4933184-4933203 Msa0934850:intron 20.0%
!! TCATATTTGATATTTCACAA+TGG - chr6_3:4933230-4933249 None:intergenic 20.0%
!! TAGATATCATGAAATATGAT+TGG - chr6_3:4933381-4933400 None:intergenic 20.0%
!! ATAACTCAATCAACAAAATT+GGG - chr6_3:4934384-4934403 None:intergenic 20.0%
!! TATAACTCAATCAACAAAAT+TGG - chr6_3:4934385-4934404 None:intergenic 20.0%
!! CGAACAATTAAAGAATATAA+AGG - chr6_3:4934540-4934559 None:intergenic 20.0%
!!! TGACACATTTAGAATTTATT+TGG + chr6_3:4935131-4935150 Msa0934850:intron 20.0%
!!! AATCATCAAATGTTTTATTC+AGG + chr6_3:4935194-4935213 Msa0934850:intron 20.0%
!! CTAGTTATTATAAATGGTAT+TGG + chr6_3:4935402-4935421 Msa0934850:intron 20.0%
!! AAGACAACATTGTAAAATAT+AGG - chr6_3:4935725-4935744 None:intergenic 20.0%
!! AAAATAGTAGGTAACTTAAA+GGG - chr6_3:4935777-4935796 None:intergenic 20.0%
!! TAAAATAGTAGGTAACTTAA+AGG - chr6_3:4935778-4935797 None:intergenic 20.0%
!! ATAATTAATCAAGTACTTAG+TGG + chr6_3:4936088-4936107 Msa0934850:intron 20.0%
!! TAATCTTCCTTATTAATTAG+GGG + chr6_3:4936176-4936195 Msa0934850:intron 20.0%
!! TACCAGTGTTTATAATTTAA+AGG - chr6_3:4936653-4936672 None:intergenic 20.0%
!!! TTGTTATTTTGTGTATTTGA+AGG + chr6_3:4936873-4936892 Msa0934850:intron 20.0%
!! CAAATAATATAATTGTCAAG+AGG - chr6_3:4937140-4937159 None:intergenic 20.0%
!! CTCTTGACAATTATATTATT+TGG + chr6_3:4937138-4937157 Msa0934850:intron 20.0%
!! TAAAAAGTTCATAAAACTAG+TGG - chr6_3:4937331-4937350 None:intergenic 20.0%
!!! TAAAAACATGAAAGTATTCA+GGG + chr6_3:4937527-4937546 Msa0934850:intron 20.0%
!!! TTTTTAACTCTAATTCTTGT+AGG + chr6_3:4937786-4937805 Msa0934850:intron 20.0%
!! TCATCTGATGTTAAAAATAT+TGG + chr6_3:4937825-4937844 Msa0934850:CDS 20.0%
!!! GTAATAACTTTTTTAATGAG+TGG + chr6_3:4937847-4937866 Msa0934850:CDS 20.0%
!! AAACAAATGTTCAAATTCTT+GGG - chr6_3:4938068-4938087 None:intergenic 20.0%
!! AAAACAAATGTTCAAATTCT+TGG - chr6_3:4938069-4938088 None:intergenic 20.0%
!! AAAATGTAACATAAATGCAT+TGG + chr6_3:4938455-4938474 Msa0934850:three_prime_UTR 20.0%
!! GTTGATTTATTGAAGACAAT+AGG + chr6_3:4930539-4930558 Msa0934850:five_prime_UTR 25.0%
!!! GTTTTTTTTCTCGAAAATGT+TGG + chr6_3:4930699-4930718 Msa0934850:intron 25.0%
!!! TGGAATTTTTGATGATTTGT+AGG + chr6_3:4930881-4930900 Msa0934850:intron 25.0%
!!! GGAATTTTTGATGATTTGTA+GGG + chr6_3:4930882-4930901 Msa0934850:intron 25.0%
!!! TCATGACTTGTATTTTTAAG+GGG - chr6_3:4930944-4930963 None:intergenic 25.0%
!! GTTTTCTCATTAAGAGATTT+GGG - chr6_3:4931004-4931023 None:intergenic 25.0%
!! TGTTTTCTCATTAAGAGATT+TGG - chr6_3:4931005-4931024 None:intergenic 25.0%
! CGAATAATTATAGCAGTTAA+TGG + chr6_3:4931446-4931465 Msa0934850:intron 25.0%
! ATTGAATGTAATGACATGTT+CGG - chr6_3:4931565-4931584 None:intergenic 25.0%
!!! GTTATATTTGTTATCTCAGT+AGG + chr6_3:4931908-4931927 Msa0934850:intron 25.0%
! TCACAAACTTATTTGAGAAA+AGG - chr6_3:4931993-4932012 None:intergenic 25.0%
!!! TAATGACATTGTTTTGGTAT+TGG - chr6_3:4932112-4932131 None:intergenic 25.0%
!! TGTATGTAATGACATTGTTT+TGG - chr6_3:4932118-4932137 None:intergenic 25.0%
! TGCATTATGTACAGATTTAA+TGG + chr6_3:4932245-4932264 Msa0934850:intron 25.0%
! AACAAACTTTATATGACATC+AGG - chr6_3:4932291-4932310 None:intergenic 25.0%
!! TCTTCTTCATTTTATGTTTC+AGG + chr6_3:4932352-4932371 Msa0934850:intron 25.0%
! AATAAAAAAAAACCTGGCAA+CGG - chr6_3:4932666-4932685 None:intergenic 25.0%
! AAATAAAACCTTCATACCAT+CGG - chr6_3:4932761-4932780 None:intergenic 25.0%
! CAGAATACTCTTATAAAAGT+CGG + chr6_3:4932913-4932932 Msa0934850:intron 25.0%
! TACTCATTATTACAACATAG+TGG - chr6_3:4933148-4933167 None:intergenic 25.0%
! TTAACCGAAAATGAAAACTA+AGG + chr6_3:4933477-4933496 Msa0934850:intron 25.0%
!!! TCTTCCTTAGTTTTCATTTT+CGG - chr6_3:4933484-4933503 None:intergenic 25.0%
!!! AATGAACATTGTTGTTTTGA+TGG + chr6_3:4933559-4933578 Msa0934850:intron 25.0%
!!! ATGAACATTGTTGTTTTGAT+GGG + chr6_3:4933560-4933579 Msa0934850:intron 25.0%
! CATAAAACATCACAACTAAA+TGG - chr6_3:4933922-4933941 None:intergenic 25.0%
!!! TATGTTATTTGCTTTAAGAG+AGG + chr6_3:4933938-4933957 Msa0934850:intron 25.0%
! AAAACAAGAGATTCATAAAG+AGG - chr6_3:4934004-4934023 None:intergenic 25.0%
!! AACTATGGTATTAGTTTCTA+TGG - chr6_3:4934209-4934228 None:intergenic 25.0%
! TAACTCAATCAACAAAATTG+GGG - chr6_3:4934383-4934402 None:intergenic 25.0%
! AGTCAATACTCTTATTACTT+TGG + chr6_3:4934629-4934648 Msa0934850:CDS 25.0%
! GTCAATACTCTTATTACTTT+GGG + chr6_3:4934630-4934649 Msa0934850:CDS 25.0%
!! ATTCTGTCTTATCTTTTGTT+CGG + chr6_3:4934721-4934740 Msa0934850:intron 25.0%
! ATTCTCAGAGATAAATTGTA+TGG + chr6_3:4934794-4934813 Msa0934850:intron 25.0%
! TTCTCAGAGATAAATTGTAT+GGG + chr6_3:4934795-4934814 Msa0934850:intron 25.0%
! ATAAATTGTATGGGTTTATG+CGG + chr6_3:4934804-4934823 Msa0934850:CDS 25.0%
! CTTATTGTTAATTGAAGGTA+CGG - chr6_3:4934879-4934898 None:intergenic 25.0%
! AAAATAAAATGAATATGGGC+AGG - chr6_3:4934916-4934935 None:intergenic 25.0%
! AACATTACCAAATCAAAATC+TGG - chr6_3:4935002-4935021 None:intergenic 25.0%
!!! TTTTGATTTGGTAATGTTTG+TGG + chr6_3:4935004-4935023 Msa0934850:intron 25.0%
!!! TTTGATTTGGTAATGTTTGT+GGG + chr6_3:4935005-4935024 Msa0934850:intron 25.0%
! TTATCCTGCACAAATTTAAA+TGG + chr6_3:4935054-4935073 Msa0934850:intron 25.0%
!! ATTATAAATGGTATTGGACA+TGG + chr6_3:4935408-4935427 Msa0934850:intron 25.0%
!! TATTACTTGTTAGGAATGAA+AGG + chr6_3:4935442-4935461 Msa0934850:intron 25.0%
! TTGTAAAATATAGGCTTTCA+AGG - chr6_3:4935716-4935735 None:intergenic 25.0%
!! ACAATGTTGTCTTTTTCTTA+AGG + chr6_3:4935732-4935751 Msa0934850:intron 25.0%
!! CAATGTTGTCTTTTTCTTAA+GGG + chr6_3:4935733-4935752 Msa0934850:intron 25.0%
! ATGAAAATCATAGAGGATAA+CGG - chr6_3:4936003-4936022 None:intergenic 25.0%
! ACAATCAATACAATAACTAG+TGG - chr6_3:4936150-4936169 None:intergenic 25.0%
! TAGTTAACCCCTAATTAATA+AGG - chr6_3:4936186-4936205 None:intergenic 25.0%
! TTATTAATTAGGGGTTAACT+AGG + chr6_3:4936185-4936204 Msa0934850:intron 25.0%
! TGTACATTTATATAGGTAGT+AGG - chr6_3:4936216-4936235 None:intergenic 25.0%
! GTGAGAATGTACATTTATAT+AGG - chr6_3:4936223-4936242 None:intergenic 25.0%
!! AGCAAGTATTCTAAACATTT+TGG + chr6_3:4936314-4936333 Msa0934850:intron 25.0%
! ATAATATTGTACAATCAAGC+TGG - chr6_3:4936435-4936454 None:intergenic 25.0%
!! CATTTGAGAAAAAGTTTTCA+AGG + chr6_3:4936593-4936612 Msa0934850:intron 25.0%
! GACCTTTAAATTATAAACAC+TGG + chr6_3:4936648-4936667 Msa0934850:intron 25.0%
! AACCATTAGATTAGCAAAAA+TGG - chr6_3:4936739-4936758 None:intergenic 25.0%
!! TTTTGCTAATCTAATGGTTT+TGG + chr6_3:4936740-4936759 Msa0934850:intron 25.0%
! TATAAAGAGAAATGAGAGAA+GGG - chr6_3:4937117-4937136 None:intergenic 25.0%
!!! CTAAAAACATGAAAGTATTC+AGG + chr6_3:4937526-4937545 Msa0934850:intron 25.0%
!! TTTTCAAATATGTGCATCAA+AGG - chr6_3:4937713-4937732 None:intergenic 25.0%
!! TTTTTAACATCAGATGAACA+GGG - chr6_3:4937822-4937841 None:intergenic 25.0%
!! ATTTTTAACATCAGATGAAC+AGG - chr6_3:4937823-4937842 None:intergenic 25.0%
!! ATATATTCTTTTATGTGCAC+AGG + chr6_3:4937911-4937930 Msa0934850:CDS 25.0%
! GAAAGAAATGAAAAAACACA+AGG - chr6_3:4937978-4937997 None:intergenic 25.0%
! AAATAACATTAAAGAGAGGA+TGG - chr6_3:4938346-4938365 None:intergenic 25.0%
!!! TCCTCTCTTTAATGTTATTT+TGG + chr6_3:4938346-4938365 Msa0934850:CDS 25.0%
! TCCAAAATAACATTAAAGAG+AGG - chr6_3:4938350-4938369 None:intergenic 25.0%
! GTCAAAAAAACATTATTGGA+TGG + chr6_3:4938501-4938520 Msa0934850:three_prime_UTR 25.0%
!! TTTTCATTCCTCATTTGATT+TGG + chr6_3:4938554-4938573 Msa0934850:three_prime_UTR 25.0%
ATGGAATACTAGTATACTAC+CGG - chr6_3:4930255-4930274 None:intergenic 30.0%
TACTAGTATTCCATAATCGT+TGG + chr6_3:4930261-4930280 Msa0934850:five_prime_UTR 30.0%
GACAATAATTGCTTTCTGTT+GGG - chr6_3:4930496-4930515 None:intergenic 30.0%
TTGAAGACAATAGGCATATA+CGG + chr6_3:4930548-4930567 Msa0934850:five_prime_UTR 30.0%
! AAATGTTGGATTGTGTTTTC+CGG + chr6_3:4930713-4930732 Msa0934850:intron 30.0%
!! CATAGAATCATTTCTAGAGT+GGG - chr6_3:4930744-4930763 None:intergenic 30.0%
! AAATGATTCTATGCCTTTTC+CGG + chr6_3:4930751-4930770 Msa0934850:intron 30.0%
ACAAAAAACACAGTTGAAAC+CGG - chr6_3:4930773-4930792 None:intergenic 30.0%
!!! TTCAACTGTGTTTTTTGTGT+AGG + chr6_3:4930775-4930794 Msa0934850:intron 30.0%
!!! TCAACTGTGTTTTTTGTGTA+GGG + chr6_3:4930776-4930795 Msa0934850:intron 30.0%
AATGGTACAAAGGGTAAAAT+TGG + chr6_3:4930861-4930880 Msa0934850:intron 30.0%
!! CATGACTTGTATTTTTAAGG+GGG - chr6_3:4930943-4930962 None:intergenic 30.0%
AATACAAGTCATGATTAGGT+TGG + chr6_3:4930950-4930969 Msa0934850:intron 30.0%
ATACAAGTCATGATTAGGTT+GGG + chr6_3:4930951-4930970 Msa0934850:intron 30.0%
CTGACAGTGTAAAAATTGAA+CGG - chr6_3:4931043-4931062 None:intergenic 30.0%
TACTGACATGTTTCAATGTT+GGG - chr6_3:4931673-4931692 None:intergenic 30.0%
TTGAGAATTAGAACCCAATT+GGG + chr6_3:4931744-4931763 Msa0934850:intron 30.0%
!! ATGTTTTATTCCTCTTTCGT+GGG + chr6_3:4932213-4932232 Msa0934850:intron 30.0%
!! CTTCATTTTATGTTTCAGGT+TGG + chr6_3:4932356-4932375 Msa0934850:intron 30.0%
!! TGAAGTGTTTTTGTGGTTTA+TGG + chr6_3:4932539-4932558 Msa0934850:intron 30.0%
TATTCATGCAATTGCTTTGT+TGG + chr6_3:4932591-4932610 Msa0934850:CDS 30.0%
! ATTCATGCAATTGCTTTGTT+GGG + chr6_3:4932592-4932611 Msa0934850:CDS 30.0%
ATTTAATTGCTATACACCGA+TGG + chr6_3:4932742-4932761 Msa0934850:intron 30.0%
GAAAAATGGTTGTCACAAAT+TGG - chr6_3:4932854-4932873 None:intergenic 30.0%
CTTATAAAAGTCGGATGATT+TGG + chr6_3:4932922-4932941 Msa0934850:intron 30.0%
GATTTGGCAAAATACTGAAT+TGG + chr6_3:4932938-4932957 Msa0934850:intron 30.0%
!!! TTATTTTATGATTGGCCTAG+TGG + chr6_3:4933044-4933063 Msa0934850:intron 30.0%
ATTATTACAACATAGTGGCT+TGG - chr6_3:4933143-4933162 None:intergenic 30.0%
! GACATTGTGCAAATATTTTG+CGG - chr6_3:4933273-4933292 None:intergenic 30.0%
TGTGAGTCTTTAGATTATCT+TGG + chr6_3:4933440-4933459 Msa0934850:intron 30.0%
AAGGAAATGAATTTCCAATG+TGG - chr6_3:4933515-4933534 None:intergenic 30.0%
! CTTCAAGTTATTCTTGTTCA+AGG - chr6_3:4933534-4933553 None:intergenic 30.0%
GTTAAATGCATGTGTAATCA+TGG + chr6_3:4933642-4933661 Msa0934850:intron 30.0%
GAGGTAGATATGTGATAATA+AGG - chr6_3:4933985-4934004 None:intergenic 30.0%
TTTCTATGGATATGCATAAG+AGG - chr6_3:4934195-4934214 None:intergenic 30.0%
CTTCGTAAAAGAAAGAACTA+TGG - chr6_3:4934224-4934243 None:intergenic 30.0%
AGACAATGAGAATATGTCAA+AGG + chr6_3:4934242-4934261 Msa0934850:intron 30.0%
GACAATGAGAATATGTCAAA+GGG + chr6_3:4934243-4934262 Msa0934850:intron 30.0%
GAAACTTATTCAACTGAACT+TGG - chr6_3:4934339-4934358 None:intergenic 30.0%
TACATGGAATATGCATTACA+TGG - chr6_3:4934438-4934457 None:intergenic 30.0%
AATACTCTTATTACTTTGGG+TGG + chr6_3:4934633-4934652 Msa0934850:CDS 30.0%
! AAGCTTTGGCATCAATTAAT+AGG + chr6_3:4934661-4934680 Msa0934850:CDS 30.0%
!! TTGATTTGGTAATGTTTGTG+GGG + chr6_3:4935006-4935025 Msa0934850:intron 30.0%
AGAAAACCAACTTACAGAAA+TGG - chr6_3:4935263-4935282 None:intergenic 30.0%
TAACAAGTAATATGCTATCC+AGG - chr6_3:4935434-4935453 None:intergenic 30.0%
TGGATAGCATATTACTTGTT+AGG + chr6_3:4935433-4935452 Msa0934850:intron 30.0%
AAAACACAAGAAAATGAACG+CGG - chr6_3:4935813-4935832 None:intergenic 30.0%
AAGAAAACACAGAAGAAAGT+GGG - chr6_3:4935850-4935869 None:intergenic 30.0%
GCTATATGAGATTAACAAGA+TGG + chr6_3:4935961-4935980 Msa0934850:intron 30.0%
! ATCCTCTATGATTTTCATTC+TGG + chr6_3:4936005-4936024 Msa0934850:intron 30.0%
! TCCTCTATGATTTTCATTCT+GGG + chr6_3:4936006-4936025 Msa0934850:intron 30.0%
! ATATCTTTTTATACCAGCCT+TGG - chr6_3:4936050-4936069 None:intergenic 30.0%
! TCAGTTCTAATACATAACAC+TGG + chr6_3:4936271-4936290 Msa0934850:intron 30.0%
! CAGTTCTAATACATAACACT+GGG + chr6_3:4936272-4936291 Msa0934850:intron 30.0%
! ATGTTGGAGACTTCATTTTA+AGG + chr6_3:4936355-4936374 Msa0934850:intron 30.0%
TCCTTAAGTTCAATTTGCAA+CGG + chr6_3:4936555-4936574 Msa0934850:intron 30.0%
!! CTCCATTTTTGCTAATCTAA+TGG + chr6_3:4936734-4936753 Msa0934850:intron 30.0%
!!! ATCTAATGGTTTTGGCAATA+AGG + chr6_3:4936748-4936767 Msa0934850:intron 30.0%
GTATAAAGAGAAATGAGAGA+AGG - chr6_3:4937118-4937137 None:intergenic 30.0%
AGATAACTTATCATTAGGGT+AGG - chr6_3:4937177-4937196 None:intergenic 30.0%
! TTTATCAGGTATACCTTTTG+TGG + chr6_3:4937218-4937237 Msa0934850:intron 30.0%
!! TTAGCTGCAATGATTTTGAT+TGG + chr6_3:4937242-4937261 Msa0934850:CDS 30.0%
AATTCTCTTACAAGTAAACG+AGG - chr6_3:4937290-4937309 None:intergenic 30.0%
! AAGAGAATTGCTCTTTTTAG+TGG + chr6_3:4937301-4937320 Msa0934850:intron 30.0%
! GACTTATGTTTCTTTTCTTC+AGG + chr6_3:4937366-4937385 Msa0934850:intron 30.0%
! ATGTTTCTTTTCTTCAGGAT+TGG + chr6_3:4937371-4937390 Msa0934850:intron 30.0%
! TGTTTCTTTTCTTCAGGATT+GGG + chr6_3:4937372-4937391 Msa0934850:intron 30.0%
ATCTGTTATTGACGAACAAA+TGG + chr6_3:4937580-4937599 Msa0934850:CDS 30.0%
! ATTCTTTAGTGGTTTGTAAC+TGG + chr6_3:4938391-4938410 Msa0934850:exon 30.0%
TTGGAACATCACATAGAAAT+AGG + chr6_3:4938474-4938493 Msa0934850:three_prime_UTR 30.0%
TCTAAACCAATTAGACCAAG+AGG + chr6_3:4930332-4930351 Msa0934850:five_prime_UTR 35.0%
CTAAACCAATTAGACCAAGA+GGG + chr6_3:4930333-4930352 Msa0934850:five_prime_UTR 35.0%
GTTTAATCTATTGCTGAAGC+AGG - chr6_3:4930474-4930493 None:intergenic 35.0%
CGACAATAATTGCTTTCTGT+TGG - chr6_3:4930497-4930516 None:intergenic 35.0%
GAAAGCAATTATTGTCGTTC+TGG + chr6_3:4930500-4930519 Msa0934850:five_prime_UTR 35.0%
!! TTATTGTCGTTCTGGAAAAG+TGG + chr6_3:4930508-4930527 Msa0934850:five_prime_UTR 35.0%
! GCATAGAATCATTTCTAGAG+TGG - chr6_3:4930745-4930764 None:intergenic 35.0%
! TTTGATGATTTGTAGGGTGA+AGG + chr6_3:4930888-4930907 Msa0934850:intron 35.0%
GAGAGAAGATAGTTACATGA+GGG - chr6_3:4931217-4931236 None:intergenic 35.0%
AGAGAGAAGATAGTTACATG+AGG - chr6_3:4931218-4931237 None:intergenic 35.0%
! GTACTGACATGTTTCAATGT+TGG - chr6_3:4931674-4931693 None:intergenic 35.0%
CTTGAGAATTAGAACCCAAT+TGG + chr6_3:4931743-4931762 Msa0934850:intron 35.0%
! AATGTAACATGTTTCGGTGT+CGG - chr6_3:4931961-4931980 None:intergenic 35.0%
!! CATGTTTTATTCCTCTTTCG+TGG + chr6_3:4932212-4932231 Msa0934850:intron 35.0%
! CAGATTTAATGGATGATACC+TGG + chr6_3:4932256-4932275 Msa0934850:intron 35.0%
TAGGCAGTTAAGAGTTAGTT+AGG + chr6_3:4932313-4932332 Msa0934850:intron 35.0%
CACATCGAGTATCTTTCTAA+AGG + chr6_3:4932396-4932415 Msa0934850:CDS 35.0%
GTTGTAATAATGAGTAGTCG+AGG + chr6_3:4933152-4933171 Msa0934850:intron 35.0%
CATCTCAGTTCTTGATATTG+CGG + chr6_3:4933610-4933629 Msa0934850:intron 35.0%
CACAACTAAATGGATCATCT+GGG - chr6_3:4933912-4933931 None:intergenic 35.0%
TCACAACTAAATGGATCATC+TGG - chr6_3:4933913-4933932 None:intergenic 35.0%
!! CTTGTTTTTCAAATGCCAAC+AGG + chr6_3:4934016-4934035 Msa0934850:intron 35.0%
ATAGATGTTCGACTAGAACT+AGG - chr6_3:4934101-4934120 None:intergenic 35.0%
AATGAGAATATGTCAAAGGG+TGG + chr6_3:4934246-4934265 Msa0934850:intron 35.0%
TTCAGTTGTGTGAAGTATGA+AGG + chr6_3:4934293-4934312 Msa0934850:intron 35.0%
GGGGAAAGGAGATAAAAATA+AGG - chr6_3:4934364-4934383 None:intergenic 35.0%
CAATCAACAAAATTGGGGAA+AGG - chr6_3:4934378-4934397 None:intergenic 35.0%
TGCATATTCCATGTATCTGT+TGG + chr6_3:4934443-4934462 Msa0934850:intron 35.0%
GCATATTCCATGTATCTGTT+GGG + chr6_3:4934444-4934463 Msa0934850:intron 35.0%
AAATTGACCCAACAGATACA+TGG - chr6_3:4934454-4934473 None:intergenic 35.0%
AAAACTATTATGGTCCTTCC+AGG - chr6_3:4934498-4934517 None:intergenic 35.0%
CTTTGGCATCAATTAATAGG+TGG + chr6_3:4934664-4934683 Msa0934850:intron 35.0%
TGCACCATTTAAATTTGTGC+AGG - chr6_3:4935061-4935080 None:intergenic 35.0%
TTATTCAGGATGCATGATGA+AGG + chr6_3:4935208-4935227 Msa0934850:intron 35.0%
TGCTATAGTATGCTTTGTAG+TGG - chr6_3:4935512-4935531 None:intergenic 35.0%
ATAGCAGAATAGTGTAGCAT+TGG + chr6_3:4935526-4935545 Msa0934850:intron 35.0%
!! AGAATAGTGTAGCATTGGTA+GGG + chr6_3:4935531-4935550 Msa0934850:intron 35.0%
TAGTAGGTAACTTAAAGGGT+TGG - chr6_3:4935773-4935792 None:intergenic 35.0%
AAACACAAGAAAATGAACGC+GGG - chr6_3:4935812-4935831 None:intergenic 35.0%
AGAAAACACAGAAGAAAGTG+GGG - chr6_3:4935849-4935868 None:intergenic 35.0%
GAAGAAAACACAGAAGAAAG+TGG - chr6_3:4935851-4935870 None:intergenic 35.0%
TCCCAGAATGAAAATCATAG+AGG - chr6_3:4936010-4936029 None:intergenic 35.0%
! TCTATGATTTTCATTCTGGG+AGG + chr6_3:4936009-4936028 Msa0934850:intron 35.0%
!! CTATGATTTTCATTCTGGGA+GGG + chr6_3:4936010-4936029 Msa0934850:intron 35.0%
!! TATGATTTTCATTCTGGGAG+GGG + chr6_3:4936011-4936030 Msa0934850:intron 35.0%
! TGTTTAGAATACTTGCTACC+TGG - chr6_3:4936311-4936330 None:intergenic 35.0%
CACTCAAGAATCAAAGTTGT+AGG - chr6_3:4936531-4936550 None:intergenic 35.0%
CTACAACTTTGATTCTTGAG+TGG + chr6_3:4936529-4936548 Msa0934850:intron 35.0%
ACCGTTGCAAATTGAACTTA+AGG - chr6_3:4936559-4936578 None:intergenic 35.0%
TAATTTAAAGGTCACGTGTG+AGG - chr6_3:4936641-4936660 None:intergenic 35.0%
ACACTGGTAACAATTGAAAG+TGG + chr6_3:4936664-4936683 Msa0934850:intron 35.0%
AGTGGTATTAGTCATGACTT+TGG + chr6_3:4936682-4936701 Msa0934850:intron 35.0%
!!! TGCAATGATTTTGATTGGTG+AGG + chr6_3:4937247-4937266 Msa0934850:CDS 35.0%
! TTCAGGATTGGGTTGTATTT+CGG + chr6_3:4937383-4937402 Msa0934850:intron 35.0%
AGAACGAATAAATTGGTGGA+TGG + chr6_3:4937433-4937452 Msa0934850:CDS 35.0%
AGTCTTCTCTGTGATATAGT+TGG + chr6_3:4937503-4937522 Msa0934850:intron 35.0%
!! AAACATGAAAGTATTCAGGG+AGG + chr6_3:4937530-4937549 Msa0934850:intron 35.0%
TATTGACGAACAAATGGTAG+AGG + chr6_3:4937586-4937605 Msa0934850:CDS 35.0%
AAAGCAATGCTGTGAAAAAG+TGG - chr6_3:4937885-4937904 None:intergenic 35.0%
! ATCCCTTGACAGTTTGAAAT+GGG + chr6_3:4938015-4938034 Msa0934850:intron 35.0%
TTCCCATTTCAAACTGTCAA+GGG - chr6_3:4938020-4938039 None:intergenic 35.0%
ATTCCCATTTCAAACTGTCA+AGG - chr6_3:4938021-4938040 None:intergenic 35.0%
AATTTGTGCTTGATTGATGC+AGG + chr6_3:4938151-4938170 Msa0934850:intron 35.0%
! ATTACTACCTTAGGTAATGG+TGG - chr6_3:4938293-4938312 None:intergenic 35.0%
ACCATTACCTAAGGTAGTAA+TGG + chr6_3:4938292-4938311 Msa0934850:CDS 35.0%
CCATTACCTAAGGTAGTAAT+GGG + chr6_3:4938293-4938312 Msa0934850:CDS 35.0%
ACATTAAAGAGAGGATGGAT+GGG - chr6_3:4938341-4938360 None:intergenic 35.0%
AACATTAAAGAGAGGATGGA+TGG - chr6_3:4938342-4938361 None:intergenic 35.0%
GAAGCTCATGAATTCTTTAG+TGG + chr6_3:4938380-4938399 Msa0934850:CDS 35.0%
! GTGAATCTTATGAACTTGCT+TGG + chr6_3:4938531-4938550 Msa0934850:three_prime_UTR 35.0%
! TATGTTGATTGTGTCCCTCT+TGG - chr6_3:4930350-4930369 None:intergenic 40.0%
CACAATCAACATAGAGGTTG+TGG + chr6_3:4930357-4930376 Msa0934850:five_prime_UTR 40.0%
ATCAACATAGAGGTTGTGGT+TGG + chr6_3:4930361-4930380 Msa0934850:five_prime_UTR 40.0%
!! ATTTCTAGAGTGGGTATGTC+CGG - chr6_3:4930735-4930754 None:intergenic 40.0%
AACACAGTTGAAACCGGAAA+AGG - chr6_3:4930767-4930786 None:intergenic 40.0%
! TAGGGTGAAGGTATAGATGT+AGG + chr6_3:4930900-4930919 Msa0934850:intron 40.0%
! AGGGTGAAGGTATAGATGTA+GGG + chr6_3:4930901-4930920 Msa0934850:intron 40.0%
GAGTCAAAGAGATCAATGGA+TGG + chr6_3:4931131-4931150 Msa0934850:CDS 40.0%
CATTCAATTAGACATGCCAC+TGG - chr6_3:4931508-4931527 None:intergenic 40.0%
GAATTAGAACCCAATTGGGT+TGG + chr6_3:4931748-4931767 Msa0934850:intron 40.0%
! GATTCTCAGGATGCCAATTT+TGG + chr6_3:4931826-4931845 Msa0934850:intron 40.0%
TCAAACTAGCCCACCAAAAT+TGG - chr6_3:4931842-4931861 None:intergenic 40.0%
!! ATGTAACATGTTTCGGTGTC+GGG - chr6_3:4931960-4931979 None:intergenic 40.0%
GGACACTGGATCAGAAATTT+CGG - chr6_3:4932067-4932086 None:intergenic 40.0%
TTAAACACCAGAAACAGCAC+AGG - chr6_3:4932184-4932203 None:intergenic 40.0%
ATAATCCAGTAACACAGCCA+CGG - chr6_3:4932574-4932593 None:intergenic 40.0%
! TGATTTTCTTAACCGTTGCC+AGG + chr6_3:4932651-4932670 Msa0934850:CDS 40.0%
TTTGCACAATGTCGTTGCAT+AGG + chr6_3:4933280-4933299 Msa0934850:intron 40.0%
GATTGGATGCATGCATCAAA+TGG - chr6_3:4933364-4933383 None:intergenic 40.0%
CTTGATATTGCGGAGAATCA+CGG + chr6_3:4933620-4933639 Msa0934850:intron 40.0%
CATGTGTAATCATGGTCACA+GGG + chr6_3:4933650-4933669 Msa0934850:intron 40.0%
ATGTGTAATCATGGTCACAG+GGG + chr6_3:4933651-4933670 Msa0934850:intron 40.0%
AAATGCCAACAGGATCCAAA+TGG + chr6_3:4934026-4934045 Msa0934850:intron 40.0%
!! ATCCAAATGGTGGATTTGCT+GGG + chr6_3:4934039-4934058 Msa0934850:intron 40.0%
CTATGGATATGCATAAGAGG+TGG - chr6_3:4934192-4934211 None:intergenic 40.0%
GAATATGTCAAAGGGTGGTT+TGG + chr6_3:4934251-4934270 Msa0934850:intron 40.0%
TTGGTATCATGGTTCATGCA+TGG + chr6_3:4934270-4934289 Msa0934850:intron 40.0%
ATTGACTGCAGCATAAGTTG+TGG - chr6_3:4934616-4934635 None:intergenic 40.0%
TTTGGGTGGTGATAAAGCTT+TGG + chr6_3:4934647-4934666 Msa0934850:CDS 40.0%
CGGTAGAGTTCTCTTGTATT+TGG + chr6_3:4934741-4934760 Msa0934850:intron 40.0%
AATTGTATGGGTTTATGCGG+CGG + chr6_3:4934807-4934826 Msa0934850:CDS 40.0%
ACATACCTAAATCCCCCATT+TGG - chr6_3:4934842-4934861 None:intergenic 40.0%
!!! AGCGATGCCAGATTTTGATT+TGG + chr6_3:4934992-4935011 Msa0934850:intron 40.0%
! ACACTGCCATTTCTGTAAGT+TGG + chr6_3:4935254-4935273 Msa0934850:intron 40.0%
! TGCACACACATTGCACTTTT+TGG + chr6_3:4935331-4935350 Msa0934850:intron 40.0%
!! CAGAATAGTGTAGCATTGGT+AGG + chr6_3:4935530-4935549 Msa0934850:intron 40.0%
TTTGTCACATTCGCGAATTG+CGG + chr6_3:4935599-4935618 Msa0934850:intron 40.0%
CACAATTTCACTGCAGTTCA+CGG - chr6_3:4935646-4935665 None:intergenic 40.0%
TTGTCCTGAAACCCTAATAG+CGG - chr6_3:4935689-4935708 None:intergenic 40.0%
CTTTCGTTTGTGTTCGTTTG+AGG + chr6_3:4935922-4935941 Msa0934850:intron 40.0%
! GTTTGTGTTCGTTTGAGGTT+CGG + chr6_3:4935927-4935946 Msa0934850:intron 40.0%
! AACACTTTTAATGCCAAGGC+TGG + chr6_3:4936034-4936053 Msa0934850:intron 40.0%
CATAACACTGGGAATCTTGT+TGG + chr6_3:4936283-4936302 Msa0934850:intron 40.0%
GATGAGCTGATCAAGAATGT+TGG + chr6_3:4936339-4936358 Msa0934850:intron 40.0%
AGGATCTCTTTACAAGTCTG+TGG + chr6_3:4936613-4936632 Msa0934850:intron 40.0%
GGATCTCTTTACAAGTCTGT+GGG + chr6_3:4936614-4936633 Msa0934850:intron 40.0%
GATCTCTTTACAAGTCTGTG+GGG + chr6_3:4936615-4936634 Msa0934850:intron 40.0%
GGTATTAGTCATGACTTTGG+TGG + chr6_3:4936685-4936704 Msa0934850:intron 40.0%
! TAGTCATGACTTTGGTGGTA+TGG + chr6_3:4936690-4936709 Msa0934850:intron 40.0%
! CCTTTGGGAAATGCTGTATT+GGG + chr6_3:4936829-4936848 Msa0934850:intron 40.0%
! CTTTGGGAAATGCTGTATTG+GGG + chr6_3:4936830-4936849 Msa0934850:intron 40.0%
TTGAAGGTTTCGTAGAACTC+TGG + chr6_3:4936889-4936908 Msa0934850:intron 40.0%
TGAAGGTTTCGTAGAACTCT+GGG + chr6_3:4936890-4936909 Msa0934850:intron 40.0%
TTGCAGCTGTCAAACATATG+AGG + chr6_3:4937024-4937043 Msa0934850:intron 40.0%
TGCAGCTGTCAAACATATGA+GGG + chr6_3:4937025-4937044 Msa0934850:intron 40.0%
AAGAGAAATGAGAGAAGGGA+CGG - chr6_3:4937113-4937132 None:intergenic 40.0%
CATTGCAGCTAATCCACAAA+AGG - chr6_3:4937234-4937253 None:intergenic 40.0%
TCAGGGGAGAACGAATAAAT+TGG + chr6_3:4937426-4937445 Msa0934850:CDS 40.0%
! ATCTGATTCGCCTGAAGAAA+AGG + chr6_3:4937628-4937647 Msa0934850:CDS 40.0%
GCCTGAAGAAAAGGAAAGTT+TGG + chr6_3:4937637-4937656 Msa0934850:CDS 40.0%
! GCCAAACTTTCCTTTTCTTC+AGG - chr6_3:4937641-4937660 None:intergenic 40.0%
GAAGAAAAGGAAAGTTTGGC+CGG + chr6_3:4937641-4937660 Msa0934850:CDS 40.0%
! GGGATCAAGTAAGGTATCTT+TGG - chr6_3:4938000-4938019 None:intergenic 40.0%
AACTGTCAAGGGATCAAGTA+AGG - chr6_3:4938009-4938028 None:intergenic 40.0%
GATCCCTTGACAGTTTGAAA+TGG + chr6_3:4938014-4938033 Msa0934850:intron 40.0%
! CACTCGTGTTACTGTTTAAG+TGG + chr6_3:4938224-4938243 Msa0934850:CDS 40.0%
! TAGGTAATGGTGGAGAATCT+GGG - chr6_3:4938283-4938302 None:intergenic 40.0%
! TTAGGTAATGGTGGAGAATC+TGG - chr6_3:4938284-4938303 None:intergenic 40.0%
AGATTCTCCACCATTACCTA+AGG + chr6_3:4938283-4938302 Msa0934850:CDS 40.0%
CCCATTACTACCTTAGGTAA+TGG - chr6_3:4938296-4938315 None:intergenic 40.0%
TAAGGACCCATTACTACCTT+AGG - chr6_3:4938302-4938321 None:intergenic 40.0%
!! GGTTCTAAGAGATTGGAGTA+AGG - chr6_3:4938320-4938339 None:intergenic 40.0%
!! ATGGATGGGTTCTAAGAGAT+TGG - chr6_3:4938327-4938346 None:intergenic 40.0%
CATTCAACAGATAGAGCTCT+TGG - chr6_3:4938434-4938453 None:intergenic 40.0%
!! ATTTGATTTGGCCCTTCCAA+AGG + chr6_3:4938566-4938585 Msa0934850:three_prime_UTR 40.0%
!! TTTGATTTGGCCCTTCCAAA+GGG + chr6_3:4938567-4938586 Msa0934850:three_prime_UTR 40.0%
! AAATCATACCCCCTTTGGAA+GGG - chr6_3:4938580-4938599 None:intergenic 40.0%
TAAATCATACCCCCTTTGGA+AGG - chr6_3:4938581-4938600 None:intergenic 40.0%
CTTGTAAATCATACCCCCTT+TGG - chr6_3:4938585-4938604 None:intergenic 40.0%
TGTGTCCCTCTTGGTCTAAT+TGG - chr6_3:4930341-4930360 None:intergenic 45.0%
GAGGGACACAATCAACATAG+AGG + chr6_3:4930351-4930370 Msa0934850:five_prime_UTR 45.0%
!! TTGTCGTTCTGGAAAAGTGG+CGG + chr6_3:4930511-4930530 Msa0934850:five_prime_UTR 45.0%
! GGGTGAAGGTATAGATGTAG+GGG + chr6_3:4930902-4930921 Msa0934850:intron 45.0%
! AGGTATAGATGTAGGGGTAC+AGG + chr6_3:4930908-4930927 Msa0934850:intron 45.0%
! GGTATAGATGTAGGGGTACA+GGG + chr6_3:4930909-4930928 Msa0934850:intron 45.0%
TGATCTCTTTGACTCACCGT+CGG - chr6_3:4931126-4931145 None:intergenic 45.0%
CGGTGAGTCAAAGAGATCAA+TGG + chr6_3:4931127-4931146 Msa0934850:CDS 45.0%
TACATGAGGGATTGAGCGTT+AGG - chr6_3:4931204-4931223 None:intergenic 45.0%
!! TCAGAAGTGTCACTGCTACT+GGG - chr6_3:4931382-4931401 None:intergenic 45.0%
!! ATCAGAAGTGTCACTGCTAC+TGG - chr6_3:4931383-4931402 None:intergenic 45.0%
! TGTTTTCTCTGTAGCACCAG+TGG + chr6_3:4931489-4931508 Msa0934850:intron 45.0%
ATTGAATGCGTGTCAGTGTC+TGG + chr6_3:4931520-4931539 Msa0934850:intron 45.0%
! TCTCAGGATGCCAATTTTGG+TGG + chr6_3:4931829-4931848 Msa0934850:intron 45.0%
!! CTCAGGATGCCAATTTTGGT+GGG + chr6_3:4931830-4931849 Msa0934850:intron 45.0%
GACATCAGGCAAGATTAACC+AGG - chr6_3:4932277-4932296 None:intergenic 45.0%
TCTAAAGGACTTCGCCATCT+CGG + chr6_3:4932411-4932430 Msa0934850:CDS 45.0%
CTGAAAAAGCTGAACCGAGA+TGG - chr6_3:4932428-4932447 None:intergenic 45.0%
GCTATACACCGATGGTATGA+AGG + chr6_3:4932750-4932769 Msa0934850:intron 45.0%
TAGAATCCAAGTTCGATGCC+GGG - chr6_3:4933102-4933121 None:intergenic 45.0%
GTAGAATCCAAGTTCGATGC+CGG - chr6_3:4933103-4933122 None:intergenic 45.0%
GCATGTGTAATCATGGTCAC+AGG + chr6_3:4933649-4933668 Msa0934850:intron 45.0%
CTAAATGGATCATCTGGGCT+AGG - chr6_3:4933907-4933926 None:intergenic 45.0%
ATCCACCATTTGGATCCTGT+TGG - chr6_3:4934034-4934053 None:intergenic 45.0%
!! GATCCAAATGGTGGATTTGC+TGG + chr6_3:4934038-4934057 Msa0934850:intron 45.0%
!! TCCAAATGGTGGATTTGCTG+GGG + chr6_3:4934040-4934059 Msa0934850:intron 45.0%
AAGTGTAACAGTTGCTTGCC+TGG - chr6_3:4934073-4934092 None:intergenic 45.0%
!! CAAAGGGTGGTTTGGTATCA+TGG + chr6_3:4934259-4934278 Msa0934850:intron 45.0%
TAACTGCAGTACTTCCTGGA+AGG + chr6_3:4934481-4934500 Msa0934850:intron 45.0%
GCATAAGTTGTGGCAAGATG+AGG - chr6_3:4934606-4934625 None:intergenic 45.0%
TTCTCTTCAAAGCACGCTCT+AGG + chr6_3:4934695-4934714 Msa0934850:intron 45.0%
AACAGCCAAATGGGGGATTT+AGG + chr6_3:4934834-4934853 Msa0934850:CDS 45.0%
CATCTACACATAAGCATGCG+TGG - chr6_3:4935303-4935322 None:intergenic 45.0%
! AAATGGTATTGGACATGGCC+TGG + chr6_3:4935413-4935432 Msa0934850:intron 45.0%
TGAAAGGATGCTAGAGCTGT+TGG + chr6_3:4935458-4935477 Msa0934850:intron 45.0%
!! AGTGTAGCATTGGTAGGGTT+TGG + chr6_3:4935536-4935555 Msa0934850:intron 45.0%
TGACAAACGCTACTGCTGAA+GGG - chr6_3:4935586-4935605 None:intergenic 45.0%
CGTGAACTGCAGTGAAATTG+TGG + chr6_3:4935644-4935663 Msa0934850:intron 45.0%
TGTCCTGAAACCCTAATAGC+GGG - chr6_3:4935688-4935707 None:intergenic 45.0%
! GGGGAACACTTTTAATGCCA+AGG + chr6_3:4936030-4936049 Msa0934850:intron 45.0%
! TCATGACTTTGGTGGTATGG+TGG + chr6_3:4936693-4936712 Msa0934850:intron 45.0%
! GCCTTTGGGAAATGCTGTAT+TGG + chr6_3:4936828-4936847 Msa0934850:intron 45.0%
CCCAATACAGCATTTCCCAA+AGG - chr6_3:4936832-4936851 None:intergenic 45.0%
AGCTGTCAAACATATGAGGG+AGG + chr6_3:4937028-4937047 Msa0934850:intron 45.0%
! GATTGGGTTGTATTTCGGCA+AGG + chr6_3:4937388-4937407 Msa0934850:CDS 45.0%
GGTTGTATTTCGGCAAGGTA+AGG + chr6_3:4937393-4937412 Msa0934850:CDS 45.0%
! AGGTAAGGAGTGTGGATTTC+AGG + chr6_3:4937408-4937427 Msa0934850:CDS 45.0%
! GGTAAGGAGTGTGGATTTCA+GGG + chr6_3:4937409-4937428 Msa0934850:CDS 45.0%
! GTAAGGAGTGTGGATTTCAG+GGG + chr6_3:4937410-4937429 Msa0934850:CDS 45.0%
GGGGAGAACGAATAAATTGG+TGG + chr6_3:4937429-4937448 Msa0934850:CDS 45.0%
! TGGATGGATGCTACTCGTTT+TGG + chr6_3:4937449-4937468 Msa0934850:CDS 45.0%
AGTTGCATGACTTGATGCTC+CGG - chr6_3:4937663-4937682 None:intergenic 45.0%
GTCATGCAACTTCCCATATC+AGG + chr6_3:4937672-4937691 Msa0934850:CDS 45.0%
GCTGTGAAAAAGTGGTTCAC+TGG - chr6_3:4937877-4937896 None:intergenic 45.0%
TGATTGATGCAGGAGCAAGA+CGG + chr6_3:4938161-4938180 Msa0934850:intron 45.0%
TAAGGGACAAACCGGGTAAA+CGG + chr6_3:4938189-4938208 Msa0934850:CDS 45.0%
! GTGGTTTGTAACTGGTGACA+TGG + chr6_3:4938399-4938418 Msa0934850:exon 45.0%
TGGAAGGGCCAAATCAAATG+AGG - chr6_3:4938565-4938584 None:intergenic 45.0%
!! TTGATTTGGCCCTTCCAAAG+GGG + chr6_3:4938568-4938587 Msa0934850:three_prime_UTR 45.0%
!!! ATTTTTTTTTATTTTATGAT+TGG + chr6_3:4933036-4933055 Msa0934850:intron 5.0%
! GTGCGTTGCAGTTTGCTTTG+CGG + chr6_3:4930394-4930413 Msa0934850:five_prime_UTR 50.0%
!! CAACAAACTTGCTGCCATCG+CGG - chr6_3:4930445-4930464 None:intergenic 50.0%
TGTGTAGGGTGAACTCACGT+TGG + chr6_3:4930790-4930809 Msa0934850:intron 50.0%
!! TCAGTTCCAGAAAGCACCGA+CGG + chr6_3:4931059-4931078 Msa0934850:intron 50.0%
ACCGATGGAACCTTCATCTG+CGG + chr6_3:4931086-4931105 Msa0934850:exon 50.0%
ATGAGGGATTGAGCGTTAGG+AGG - chr6_3:4931201-4931220 None:intergenic 50.0%
ACTCACACGTGTCAGACACT+GGG - chr6_3:4931417-4931436 None:intergenic 50.0%
!! AGAACCCAATTGGGTTGGCT+TGG + chr6_3:4931753-4931772 Msa0934850:intron 50.0%
ACCACCAAGCCAACCCAATT+GGG - chr6_3:4931760-4931779 None:intergenic 50.0%
!! TGGCTTGGTGGTGTTGACTT+AGG + chr6_3:4931768-4931787 Msa0934850:intron 50.0%
!! GTGGTGTTGACTTAGGACCT+TGG + chr6_3:4931775-4931794 Msa0934850:intron 50.0%
ATCGAACCTGAGACCTTGAG+AGG - chr6_3:4931809-4931828 None:intergenic 50.0%
AGGTCTCAGGTTCGATTCTC+AGG + chr6_3:4931813-4931832 Msa0934850:intron 50.0%
ACACCTTCGATCACAGGTGT+CGG - chr6_3:4931935-4931954 None:intergenic 50.0%
CACTTACACGTGTCGAACAG+TGG - chr6_3:4932088-4932107 None:intergenic 50.0%
AACAGCACAGGATGACACGT+CGG - chr6_3:4932172-4932191 None:intergenic 50.0%
!! GTGTCATCCTGTGCTGTTTC+TGG + chr6_3:4932174-4932193 Msa0934850:intron 50.0%
AAGTTCTGTGCCCACGAAAG+AGG - chr6_3:4932226-4932245 None:intergenic 50.0%
GGAAGAACTAAGCGCCACAT+TGG + chr6_3:4933498-4933517 Msa0934850:intron 50.0%
TGCCAACAGGATCCAAATGG+TGG + chr6_3:4934029-4934048 Msa0934850:intron 50.0%
!! CCAAATGGTGGATTTGCTGG+GGG + chr6_3:4934041-4934060 Msa0934850:intron 50.0%
GCTGTAACTGCAGTACTTCC+TGG + chr6_3:4934477-4934496 Msa0934850:intron 50.0%
GGCGGATGAAACAGCCAAAT+GGG + chr6_3:4934825-4934844 Msa0934850:CDS 50.0%
GCGGATGAAACAGCCAAATG+GGG + chr6_3:4934826-4934845 Msa0934850:CDS 50.0%
CGGATGAAACAGCCAAATGG+GGG + chr6_3:4934827-4934846 Msa0934850:CDS 50.0%
AGTGGCGCTATTGACAACAG+AGG - chr6_3:4935494-4935513 None:intergenic 50.0%
ACAAACGCTACTGCTGAAGG+GGG - chr6_3:4935584-4935603 None:intergenic 50.0%
GACAAACGCTACTGCTGAAG+GGG - chr6_3:4935585-4935604 None:intergenic 50.0%
GTGACAAACGCTACTGCTGA+AGG - chr6_3:4935587-4935606 None:intergenic 50.0%
GTGAAATTGTGGCCTCAACC+CGG + chr6_3:4935655-4935674 Msa0934850:intron 50.0%
CTGGGAATCTTGTTGGAACC+AGG + chr6_3:4936290-4936309 Msa0934850:intron 50.0%
AGTCGCACTAGCCACAATGT+TGG + chr6_3:4936804-4936823 Msa0934850:intron 50.0%
! AGCCACAATGTTGGTGCCTT+TGG + chr6_3:4936813-4936832 Msa0934850:intron 50.0%
! GCCACAATGTTGGTGCCTTT+GGG + chr6_3:4936814-4936833 Msa0934850:intron 50.0%
!! TCCCAAAGGCACCAACATTG+TGG - chr6_3:4936818-4936837 None:intergenic 50.0%
!! ACATATGAGGGAGGCATTGC+TGG + chr6_3:4937037-4937056 Msa0934850:CDS 50.0%
GAAATGAGAGAAGGGACGGT+TGG - chr6_3:4937109-4937128 None:intergenic 50.0%
GATTGGTGAGGCTAATCGCT+TGG + chr6_3:4937259-4937278 Msa0934850:CDS 50.0%
TTTCGGCAAGGTAAGGAGTG+TGG + chr6_3:4937400-4937419 Msa0934850:CDS 50.0%
!! TGGATGCTACTCGTTTTGGC+AGG + chr6_3:4937453-4937472 Msa0934850:CDS 50.0%
ACTTCCCATATCAGGCGTGA+TGG + chr6_3:4937680-4937699 Msa0934850:CDS 50.0%
CCTACCATCACGCCTGATAT+GGG - chr6_3:4937687-4937706 None:intergenic 50.0%
ACCTACCATCACGCCTGATA+TGG - chr6_3:4937688-4937707 None:intergenic 50.0%
TAGTGATCCCTCCGTTTACC+CGG - chr6_3:4938203-4938222 None:intergenic 50.0%
GGCGCTTGGACAAACTATAC+TGG - chr6_3:4938262-4938281 None:intergenic 50.0%
! TGATTTGGCCCTTCCAAAGG+GGG + chr6_3:4938569-4938588 Msa0934850:three_prime_UTR 50.0%
! TGCAGTTTGCTTTGCGGCGA+CGG + chr6_3:4930400-4930419 Msa0934850:five_prime_UTR 55.0%
CGAACAAGATGCAACCGCGA+TGG + chr6_3:4930428-4930447 Msa0934850:five_prime_UTR 55.0%
!! TCGTTCTGGAAAAGTGGCGG+TGG + chr6_3:4930514-4930533 Msa0934850:five_prime_UTR 55.0%
! GTTACACCGTCGGTGCTTTC+TGG - chr6_3:4931068-4931087 None:intergenic 55.0%
! GGTTCCATCGGTTACACCGT+CGG - chr6_3:4931078-4931097 None:intergenic 55.0%
GCCGCAGATGAAGGTTCCAT+CGG - chr6_3:4931090-4931109 None:intergenic 55.0%
GATGGAACCTTCATCTGCGG+CGG + chr6_3:4931089-4931108 Msa0934850:exon 55.0%
CACTCACACGTGTCAGACAC+TGG - chr6_3:4931418-4931437 None:intergenic 55.0%
!! ACCCAATTGGGTTGGCTTGG+TGG + chr6_3:4931756-4931775 Msa0934850:intron 55.0%
CACCACCAAGCCAACCCAAT+TGG - chr6_3:4931761-4931780 None:intergenic 55.0%
! CTTGAGAGGAGCACACTCCA+AGG - chr6_3:4931795-4931814 None:intergenic 55.0%
CTTGGAGTGTGCTCCTCTCA+AGG + chr6_3:4931793-4931812 Msa0934850:intron 55.0%
TGTGCTCCTCTCAAGGTCTC+AGG + chr6_3:4931800-4931819 Msa0934850:intron 55.0%
CGGGAAACACCTTCGATCAC+AGG - chr6_3:4931941-4931960 None:intergenic 55.0%
ACGTGTCGAACAGTGGACAC+TGG - chr6_3:4932081-4932100 None:intergenic 55.0%
GTTTATGGTGCAGTCGACCG+TGG + chr6_3:4932554-4932573 Msa0934850:intron 55.0%
TTCCTCCTTCCCGTGTGTGT+GGG - chr6_3:4933070-4933089 None:intergenic 55.0%
! AAGGAGGAAGTGTGGTGACC+CGG + chr6_3:4933081-4933100 Msa0934850:intron 55.0%
CCCCCAGCAAATCCACCATT+TGG - chr6_3:4934044-4934063 None:intergenic 55.0%
TAACAGTTGCTTGCCTGGCC+AGG - chr6_3:4934068-4934087 None:intergenic 55.0%
! GTGGCAAGATGAGGCATCTG+AGG - chr6_3:4934597-4934616 None:intergenic 55.0%
CGGCGGATGAAACAGCCAAA+TGG + chr6_3:4934824-4934843 Msa0934850:CDS 55.0%
! ACTTTGGTGGTATGGTGGCG+AGG + chr6_3:4936698-4936717 Msa0934850:intron 55.0%
! CTTTGGTGGTATGGTGGCGA+GGG + chr6_3:4936699-4936718 Msa0934850:intron 55.0%
!! CTGGTTCTGAGGCTCATGGT+GGG + chr6_3:4937065-4937084 Msa0934850:CDS 55.0%
CCCATATCAGGCGTGATGGT+AGG + chr6_3:4937684-4937703 Msa0934850:intron 55.0%
TTGATGCAGGAGCAAGACGG+TGG + chr6_3:4938164-4938183 Msa0934850:intron 55.0%
!! AGGAGCAAGACGGTGGACTA+AGG + chr6_3:4938171-4938190 Msa0934850:intron 55.0%
!! GGAGCAAGACGGTGGACTAA+GGG + chr6_3:4938172-4938191 Msa0934850:intron 55.0%
!! CGGTGGACTAAGGGACAAAC+CGG + chr6_3:4938181-4938200 Msa0934850:CDS 55.0%
!! GGTGGACTAAGGGACAAACC+GGG + chr6_3:4938182-4938201 Msa0934850:CDS 55.0%
GGACAAACCGGGTAAACGGA+GGG + chr6_3:4938193-4938212 Msa0934850:CDS 55.0%
! GCAGTTTGCTTTGCGGCGAC+GGG + chr6_3:4930401-4930420 Msa0934850:five_prime_UTR 60.0%
!! AGCACCGACGGTGTAACCGA+TGG + chr6_3:4931071-4931090 Msa0934850:exon 60.0%
GTTGTCTCCGCCGCAGATGA+AGG - chr6_3:4931099-4931118 None:intergenic 60.0%
GGCGGAGACAACATCACCGA+CGG + chr6_3:4931107-4931126 Msa0934850:CDS 60.0%
GGACCGACACCTGTGATCGA+AGG + chr6_3:4931929-4931948 Msa0934850:intron 60.0%
GTCGACCGTGGCTGTGTTAC+TGG + chr6_3:4932566-4932585 Msa0934850:intron 60.0%
CTTCCTCCTTCCCGTGTGTG+TGG - chr6_3:4933071-4933090 None:intergenic 60.0%
CACACGGGAAGGAGGAAGTG+TGG + chr6_3:4933073-4933092 Msa0934850:intron 60.0%
! TGGTGACCCGGCATCGAACT+TGG + chr6_3:4933093-4933112 Msa0934850:intron 60.0%
!! CTAATAGCGGGCGCGATTCC+GGG - chr6_3:4935676-4935695 None:intergenic 60.0%
!! CCTAATAGCGGGCGCGATTC+CGG - chr6_3:4935677-4935696 None:intergenic 60.0%
CGGAATCGCGCCCGCTATTA+GGG + chr6_3:4935675-4935694 Msa0934850:intron 60.0%
GCGCCCGCTATTAGGGTTTC+AGG + chr6_3:4935682-4935701 Msa0934850:intron 60.0%
!! TGCTGGTGAGCCTGGTTCTG+AGG + chr6_3:4937054-4937073 Msa0934850:CDS 60.0%
!! GAGCCTGGTTCTGAGGCTCA+TGG + chr6_3:4937061-4937080 Msa0934850:CDS 60.0%
CCACCATGAGCCTCAGAACC+AGG - chr6_3:4937067-4937086 None:intergenic 60.0%
!! CCTGGTTCTGAGGCTCATGG+TGG + chr6_3:4937064-4937083 Msa0934850:CDS 60.0%
GGGACAAACCGGGTAAACGG+AGG + chr6_3:4938192-4938211 Msa0934850:CDS 60.0%
TGGTGGAGAATCTGGGCGCT+TGG - chr6_3:4938276-4938295 None:intergenic 60.0%
GGCCTAGTGGCCCACACACA+CGG + chr6_3:4933057-4933076 Msa0934850:intron 65.0%
GCCTAGTGGCCCACACACAC+GGG + chr6_3:4933058-4933077 Msa0934850:intron 65.0%
TCCCGTGTGTGTGGGCCACT+AGG - chr6_3:4933062-4933081 None:intergenic 65.0%
AGTGGCCCACACACACGGGA+AGG + chr6_3:4933062-4933081 Msa0934850:intron 65.0%
!! GGTGGATTTGCTGGGGGACC+TGG + chr6_3:4934047-4934066 Msa0934850:intron 65.0%
! ATTTGCTGGGGGACCTGGCC+AGG + chr6_3:4934052-4934071 Msa0934850:intron 65.0%
TACTGCTGAAGGGGGCTCGC+AGG - chr6_3:4935576-4935595 None:intergenic 65.0%
CCGGAATCGCGCCCGCTATT+AGG + chr6_3:4935674-4935693 Msa0934850:intron 65.0%
!! GGAGGCATTGCTGGTGAGCC+TGG + chr6_3:4937046-4937065 Msa0934850:CDS 65.0%
GGCCCACACACACGGGAAGG+AGG + chr6_3:4933065-4933084 Msa0934850:intron 70.0%
GCGGGCGCGATTCCGGGTTG+AGG - chr6_3:4935670-4935689 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 4930247 4938611 4930247 ID=Msa0934850;Name=Msa0934850
chr6_3 mRNA 4930247 4938611 4930247 ID=Msa0934850-mRNA-1;Parent=Msa0934850;Name=Msa0934850-mRNA-1;_AED=0.13;_eAED=0.13;_QI=375|0.81|1|1|0.81|0.83|12|202|397
chr6_3 exon 4930247 4930594 4930247 ID=Msa0934850-mRNA-1:exon:1551;Parent=Msa0934850-mRNA-1
chr6_3 exon 4931063 4931220 4931063 ID=Msa0934850-mRNA-1:exon:1552;Parent=Msa0934850-mRNA-1
chr6_3 exon 4932374 4932460 4932374 ID=Msa0934850-mRNA-1:exon:1553;Parent=Msa0934850-mRNA-1
chr6_3 exon 4932567 4932672 4932567 ID=Msa0934850-mRNA-1:exon:1554;Parent=Msa0934850-mRNA-1
chr6_3 exon 4934600 4934682 4934600 ID=Msa0934850-mRNA-1:exon:1555;Parent=Msa0934850-mRNA-1
chr6_3 exon 4934802 4934855 4934802 ID=Msa0934850-mRNA-1:exon:1556;Parent=Msa0934850-mRNA-1
chr6_3 exon 4937030 4937086 4937030 ID=Msa0934850-mRNA-1:exon:1557;Parent=Msa0934850-mRNA-1
chr6_3 exon 4937226 4937298 4937226 ID=Msa0934850-mRNA-1:exon:1558;Parent=Msa0934850-mRNA-1
chr6_3 exon 4937388 4937474 4937388 ID=Msa0934850-mRNA-1:exon:1559;Parent=Msa0934850-mRNA-1
chr6_3 exon 4937548 4937701 4937548 ID=Msa0934850-mRNA-1:exon:1560;Parent=Msa0934850-mRNA-1
chr6_3 exon 4937808 4937932 4937808 ID=Msa0934850-mRNA-1:exon:1561;Parent=Msa0934850-mRNA-1
chr6_3 exon 4938173 4938611 4938173 ID=Msa0934850-mRNA-1:exon:1562;Parent=Msa0934850-mRNA-1
chr6_3 five_prime_UTR 4930247 4930594 4930247 ID=Msa0934850-mRNA-1:five_prime_utr;Parent=Msa0934850-mRNA-1
chr6_3 five_prime_UTR 4931063 4931089 4931063 ID=Msa0934850-mRNA-1:five_prime_utr;Parent=Msa0934850-mRNA-1
chr6_3 CDS 4931090 4931220 4931090 ID=Msa0934850-mRNA-1:cds;Parent=Msa0934850-mRNA-1
chr6_3 CDS 4932374 4932460 4932374 ID=Msa0934850-mRNA-1:cds;Parent=Msa0934850-mRNA-1
chr6_3 CDS 4932567 4932672 4932567 ID=Msa0934850-mRNA-1:cds;Parent=Msa0934850-mRNA-1
chr6_3 CDS 4934600 4934682 4934600 ID=Msa0934850-mRNA-1:cds;Parent=Msa0934850-mRNA-1
chr6_3 CDS 4934802 4934855 4934802 ID=Msa0934850-mRNA-1:cds;Parent=Msa0934850-mRNA-1
chr6_3 CDS 4937030 4937086 4937030 ID=Msa0934850-mRNA-1:cds;Parent=Msa0934850-mRNA-1
chr6_3 CDS 4937226 4937298 4937226 ID=Msa0934850-mRNA-1:cds;Parent=Msa0934850-mRNA-1
chr6_3 CDS 4937388 4937474 4937388 ID=Msa0934850-mRNA-1:cds;Parent=Msa0934850-mRNA-1
chr6_3 CDS 4937548 4937701 4937548 ID=Msa0934850-mRNA-1:cds;Parent=Msa0934850-mRNA-1
chr6_3 CDS 4937808 4937932 4937808 ID=Msa0934850-mRNA-1:cds;Parent=Msa0934850-mRNA-1
chr6_3 CDS 4938173 4938409 4938173 ID=Msa0934850-mRNA-1:cds;Parent=Msa0934850-mRNA-1
chr6_3 three_prime_UTR 4938410 4938611 4938410 ID=Msa0934850-mRNA-1:three_prime_utr;Parent=Msa0934850-mRNA-1
Gene Sequence

>Msa0934850

ATGGAACCTTCATCTGCGGCGGAGACAACATCACCGACGGTGAGTCAAAGAGATCAATGGATGGTAGAATCACAAGTGTTTCAGATTTATCAACTTTTCTCTACTATTCCTCCTAACGCTCAATCCCTCATGTTGGAGTTGCAACGAGATAAACACATCGAGTATCTTTCTAAAGGACTTCGCCATCTCGGTTCAGCTTTTTCAGTTTTAGATGCAAATCGACCGTGGCTGTGTTACTGGATTATTCATGCAATTGCTTTGTTGGGAGAAACTATTGATGATGAACTTGAAGATAACACAGTTGATTTTCTTAACCGTTGCCAGATGCCTCATCTTGCCACAACTTATGCTGCAGTCAATACTCTTATTACTTTGGGTGGTGATAAAGCTTTGGCATCAATTAATAGAGATAAATTGTATGGGTTTATGCGGCGGATGAAACAGCCAAATGGGGGATTTAGCTGTCAAACATATGAGGGAGGCATTGCTGGTGAGCCTGGTTCTGAGGCTCATGGTGGGTATACCTTTTGTGGATTAGCTGCAATGATTTTGATTGGTGAGGCTAATCGCTTGGATCTGCCTCGTTTACTTGATTGGGTTGTATTTCGGCAAGGTAAGGAGTGTGGATTTCAGGGGAGAACGAATAAATTGGTGGATGGATGCTACTCGTTTTGGCAGGGAGGTGCTGTTGCACTATTGCAAAGATTACAATCTGTTATTGACGAACAAATGGTAGAGGCATCACAGTCTTTTACGAAATCTGATTCGCCTGAAGAAAAGGAAAGTTTGGCCGGAGCATCAAGTCATGCAACTTCCCATATCAGGCGTGATGGCATGAGTAAACCCTGTTCATCTGATGTTAAAAATATTGGTAATAACTTTTTTAATGAGTGGAGAGCCAGTGAACCACTTTTTCACAGCATTGCTTTACAGCAATATATTCTTTTATGTGCACAGGAGCAAGACGGTGGACTAAGGGACAAACCGGGTAAACGGAGGGATCACTATCACTCGTGTTACTGTTTAAGTGGTCTCTCATTGTGCCAGTATAGTTTGTCCAAGCGCCCAGATTCTCCACCATTACCTAAGGTAGTAATGGGTCCTTACTCCAATCTCTTAGAACCCATCCATCCTCTCTTTAATGTTATTTTGGAACGATATCGTGAAGCTCATGAATTCTTTAGTGGTTTGTAA

Protein sequence

>Msa0934850

MEPSSAAETTSPTVSQRDQWMVESQVFQIYQLFSTIPPNAQSLMLELQRDKHIEYLSKGLRHLGSAFSVLDANRPWLCYWIIHAIALLGETIDDELEDNTVDFLNRCQMPHLATTYAAVNTLITLGGDKALASINRDKLYGFMRRMKQPNGGFSCQTYEGGIAGEPGSEAHGGYTFCGLAAMILIGEANRLDLPRLLDWVVFRQGKECGFQGRTNKLVDGCYSFWQGGAVALLQRLQSVIDEQMVEASQSFTKSDSPEEKESLAGASSHATSHIRRDGMSKPCSSDVKNIGNNFFNEWRASEPLFHSIALQQYILLCAQEQDGGLRDKPGKRRDHYHSCYCLSGLSLCQYSLSKRPDSPPLPKVVMGPYSNLLEPIHPLFNVILERYREAHEFFSGL*