Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1318400 | sp|Q9M2C9|SKIP4_ARATH | 53.936 | 343 | 149 | 5 | 25 | 363 | 21 | 358 | 1.98e-123 | 362 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1318400 | A0A072TN21 | 95.592 | 363 | 16 | 0 | 1 | 363 | 1 | 363 | 0.0 | 713 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1318400 | Msa1446030 | 0.823138 | 1.627396e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1318400 | MtrunA17_Chr8g0348991 | 95.592 | 363 | 16 | 0 | 1 | 363 | 1 | 363 | 0.0 | 713 |
| Msa1318400 | MtrunA17_Chr4g0063531 | 28.824 | 340 | 218 | 9 | 21 | 349 | 63 | 389 | 1.27e-33 | 129 |
| Msa1318400 | MtrunA17_Chr8g0378511 | 28.797 | 316 | 211 | 8 | 24 | 331 | 76 | 385 | 1.53e-31 | 123 |
| Msa1318400 | MtrunA17_Chr2g0285851 | 28.704 | 324 | 212 | 9 | 25 | 337 | 52 | 367 | 9.95e-30 | 118 |
| Msa1318400 | MtrunA17_Chr3g0122681 | 28.475 | 295 | 173 | 9 | 21 | 296 | 31 | 306 | 1.57e-29 | 117 |
| Msa1318400 | MtrunA17_Chr8g0377241 | 32.922 | 243 | 143 | 8 | 19 | 250 | 45 | 278 | 1.02e-28 | 115 |
| Msa1318400 | MtrunA17_Chr3g0129221 | 29.924 | 264 | 161 | 8 | 20 | 276 | 4 | 250 | 1.32e-26 | 108 |
| Msa1318400 | MtrunA17_Chr7g0260051 | 26.923 | 312 | 192 | 11 | 25 | 321 | 4 | 294 | 1.69e-19 | 88.6 |
| Msa1318400 | MtrunA17_Chr2g0278921 | 28.571 | 238 | 153 | 6 | 21 | 252 | 39 | 265 | 2.88e-18 | 85.9 |
| Msa1318400 | MtrunA17_Chr3g0115401 | 23.276 | 348 | 195 | 13 | 21 | 299 | 39 | 383 | 5.96e-18 | 85.1 |
| Msa1318400 | MtrunA17_Chr4g0060541 | 23.913 | 322 | 214 | 9 | 2 | 304 | 7 | 316 | 3.58e-16 | 79.0 |
| Msa1318400 | MtrunA17_Chr3g0138981 | 23.704 | 270 | 176 | 9 | 6 | 270 | 5 | 249 | 6.69e-15 | 75.1 |
| Msa1318400 | MtrunA17_Chr2g0326541 | 23.239 | 284 | 202 | 6 | 22 | 299 | 17 | 290 | 2.66e-12 | 67.4 |
| Msa1318400 | MtrunA17_Chr4g0010161 | 24.675 | 231 | 161 | 5 | 25 | 252 | 68 | 288 | 1.96e-11 | 65.1 |
| Msa1318400 | MtrunA17_Chr4g0011151 | 24.658 | 219 | 148 | 5 | 16 | 230 | 93 | 298 | 2.84e-11 | 64.7 |
| Msa1318400 | MtrunA17_Chr4g0011221 | 24.658 | 219 | 148 | 5 | 16 | 230 | 93 | 298 | 7.65e-11 | 63.2 |
| Msa1318400 | MtrunA17_Chr4g0011161 | 24.201 | 219 | 149 | 5 | 16 | 230 | 93 | 298 | 9.57e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1318400 | AT3G61350.2 | 53.936 | 343 | 149 | 5 | 25 | 363 | 21 | 358 | 2.01e-124 | 362 |
| Msa1318400 | AT3G61350.1 | 53.936 | 343 | 149 | 5 | 25 | 363 | 21 | 358 | 2.01e-124 | 362 |
| Msa1318400 | AT1G55270.1 | 29.781 | 319 | 208 | 8 | 24 | 333 | 77 | 388 | 1.27e-32 | 127 |
| Msa1318400 | AT2G24540.1 | 24.796 | 367 | 252 | 9 | 12 | 363 | 15 | 372 | 5.92e-29 | 115 |
| Msa1318400 | AT1G67480.3 | 29.739 | 306 | 185 | 11 | 3 | 296 | 23 | 310 | 1.79e-25 | 106 |
| Msa1318400 | AT1G67480.1 | 29.739 | 306 | 185 | 11 | 3 | 296 | 23 | 310 | 1.79e-25 | 106 |
| Msa1318400 | AT1G67480.2 | 29.739 | 306 | 185 | 11 | 3 | 296 | 23 | 310 | 1.79e-25 | 106 |
| Msa1318400 | AT1G30090.1 | 26.506 | 332 | 219 | 12 | 16 | 331 | 43 | 365 | 3.78e-25 | 105 |
| Msa1318400 | AT1G27420.1 | 24.739 | 287 | 191 | 8 | 20 | 293 | 5 | 279 | 1.65e-20 | 91.7 |
| Msa1318400 | AT4G39590.1 | 25.382 | 327 | 208 | 7 | 19 | 320 | 31 | 346 | 3.44e-20 | 91.7 |
| Msa1318400 | AT1G55270.2 | 27.509 | 269 | 179 | 8 | 74 | 333 | 1 | 262 | 2.12e-19 | 88.2 |
| Msa1318400 | AT1G22040.1 | 25.562 | 356 | 188 | 12 | 9 | 296 | 32 | 378 | 9.57e-19 | 87.8 |
| Msa1318400 | AT3G63220.1 | 24.367 | 316 | 195 | 11 | 25 | 321 | 4 | 294 | 7.50e-18 | 84.0 |
| Msa1318400 | AT2G29830.1 | 23.599 | 339 | 221 | 13 | 7 | 323 | 9 | 331 | 7.68e-18 | 84.3 |
| Msa1318400 | AT3G63220.3 | 24.367 | 316 | 195 | 11 | 25 | 321 | 11 | 301 | 8.56e-18 | 84.0 |
| Msa1318400 | AT3G63220.2 | 24.367 | 316 | 195 | 11 | 25 | 321 | 11 | 301 | 8.56e-18 | 84.0 |
| Msa1318400 | AT2G21950.1 | 26.568 | 271 | 176 | 10 | 18 | 276 | 13 | 272 | 5.04e-17 | 82.0 |
| Msa1318400 | AT1G16250.2 | 29.381 | 194 | 115 | 7 | 25 | 203 | 8 | 194 | 2.65e-16 | 80.1 |
| Msa1318400 | AT1G16250.1 | 29.381 | 194 | 115 | 7 | 25 | 203 | 8 | 194 | 2.65e-16 | 80.1 |
| Msa1318400 | AT4G39240.1 | 29.804 | 255 | 149 | 10 | 29 | 270 | 37 | 274 | 4.20e-14 | 73.2 |
| Msa1318400 | AT5G60570.2 | 22.000 | 300 | 216 | 8 | 11 | 303 | 35 | 323 | 8.03e-14 | 72.4 |
| Msa1318400 | AT5G60570.1 | 22.000 | 300 | 216 | 8 | 11 | 303 | 35 | 323 | 8.03e-14 | 72.4 |
| Msa1318400 | AT5G60570.3 | 22.000 | 300 | 216 | 8 | 11 | 303 | 35 | 323 | 8.03e-14 | 72.4 |
| Msa1318400 | AT3G43710.1 | 26.556 | 241 | 156 | 9 | 29 | 260 | 29 | 257 | 1.29e-13 | 72.0 |
| Msa1318400 | AT4G39550.1 | 25.095 | 263 | 153 | 7 | 29 | 261 | 27 | 275 | 4.08e-13 | 70.5 |
| Msa1318400 | AT2G02870.2 | 23.151 | 311 | 207 | 10 | 8 | 299 | 100 | 397 | 4.45e-13 | 70.5 |
| Msa1318400 | AT2G02870.3 | 23.151 | 311 | 207 | 10 | 8 | 299 | 100 | 397 | 4.45e-13 | 70.5 |
| Msa1318400 | AT2G02870.1 | 23.151 | 311 | 207 | 10 | 8 | 299 | 100 | 397 | 4.45e-13 | 70.5 |
| Msa1318400 | AT1G14330.1 | 23.077 | 312 | 207 | 11 | 8 | 299 | 72 | 370 | 4.66e-13 | 70.5 |
| Msa1318400 | AT4G39290.1 | 30.159 | 189 | 121 | 6 | 29 | 210 | 16 | 200 | 1.78e-12 | 68.2 |
| Msa1318400 | AT4G39756.1 | 23.765 | 324 | 202 | 10 | 15 | 315 | 9 | 310 | 2.22e-12 | 68.2 |
| Msa1318400 | AT4G38940.1 | 25.338 | 296 | 190 | 12 | 25 | 303 | 20 | 301 | 5.16e-12 | 67.0 |
| Msa1318400 | AT1G61540.1 | 24.107 | 336 | 211 | 10 | 19 | 320 | 20 | 345 | 5.27e-12 | 67.0 |
| Msa1318400 | AT5G49000.2 | 26.644 | 289 | 161 | 11 | 29 | 293 | 25 | 286 | 1.59e-11 | 65.5 |
| Msa1318400 | AT4G23580.1 | 26.154 | 260 | 147 | 9 | 29 | 261 | 19 | 260 | 1.89e-11 | 65.5 |
| Msa1318400 | AT4G39580.1 | 25.484 | 310 | 197 | 12 | 29 | 320 | 26 | 319 | 4.58e-11 | 63.9 |
| Msa1318400 | AT4G19870.2 | 26.613 | 248 | 149 | 11 | 31 | 257 | 35 | 270 | 7.29e-11 | 63.5 |
| Msa1318400 | AT4G19870.1 | 26.613 | 248 | 149 | 11 | 31 | 257 | 35 | 270 | 7.29e-11 | 63.5 |
| Msa1318400 | AT4G34170.1 | 24.299 | 321 | 197 | 10 | 4 | 320 | 1 | 279 | 7.55e-11 | 62.8 |
Find 103 sgRNAs with CRISPR-Local
Find 243 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACTCACCAACACGGAATT+AGG | 0.151288 | 8_4:+20391103 | None:intergenic |
| GGGAAATAAGCTCTTCTTAT+TGG | 0.156806 | 8_4:-20389873 | Msa1318400:CDS |
| TCAATTTCGGGAACTATATT+AGG | 0.164167 | 8_4:+20388264 | None:intergenic |
| GGTAAAAGCATTTATATTAT+TGG | 0.186633 | 8_4:-20387949 | Msa1318400:CDS |
| TGCTTTGTGCAGGGATAAAT+TGG | 0.190481 | 8_4:-20390008 | Msa1318400:CDS |
| ACTATTGAATCTTCAATTTC+GGG | 0.198008 | 8_4:+20388252 | None:intergenic |
| GCAGACACCGACATGGTTTC+AGG | 0.213853 | 8_4:-20388132 | Msa1318400:CDS |
| AACTATTGAATCTTCAATTT+CGG | 0.215275 | 8_4:+20388251 | None:intergenic |
| TAAATATAGAAAATTATTAT+AGG | 0.258129 | 8_4:-20391180 | None:intergenic |
| TGTTGGTGATATTGGAAATA+TGG | 0.261504 | 8_4:-20387899 | Msa1318400:CDS |
| GGAAATAAGCTCTTCTTATT+GGG | 0.298222 | 8_4:-20389872 | Msa1318400:CDS |
| TCATGTTTACTGTTACGTTT+TGG | 0.309221 | 8_4:-20389984 | Msa1318400:CDS |
| GTTGTTGATGTTGGTGATAT+TGG | 0.315849 | 8_4:-20387907 | Msa1318400:CDS |
| ACCAACTGCAACAAGTTTGC+AGG | 0.334342 | 8_4:+20387969 | None:intergenic |
| AGCATTTATATTATTGGAAA+AGG | 0.341860 | 8_4:-20387943 | Msa1318400:CDS |
| ATTCAAGTGATCCTCATTCT+TGG | 0.348607 | 8_4:-20388332 | Msa1318400:CDS |
| TGTTGCCATGTGCCATTTGA+TGG | 0.360250 | 8_4:+20388156 | None:intergenic |
| GCATACACATGAGGTGTTAA+AGG | 0.366134 | 8_4:+20388192 | None:intergenic |
| AACTCACCAACACGGAATTA+GGG | 0.373112 | 8_4:+20391104 | None:intergenic |
| AATTGAAGATTCAATAGTTA+TGG | 0.374204 | 8_4:-20388247 | Msa1318400:CDS |
| TTGTGATCAGAGACTAATTT+CGG | 0.379853 | 8_4:+20387850 | None:intergenic |
| GTCACAATTGGTGACAGGTT+TGG | 0.396360 | 8_4:+20387661 | None:intergenic |
| CTCGAAAAGATGGAGGGACT+TGG | 0.398078 | 8_4:-20390092 | Msa1318400:CDS |
| TCTTATTGGGTGGCTGTGGC+TGG | 0.404326 | 8_4:-20389859 | Msa1318400:CDS |
| AACCCCATGAATGAGCTTCC+AGG | 0.418653 | 8_4:+20389940 | None:intergenic |
| AACAAGTTTGCAGGGTGGTC+TGG | 0.421501 | 8_4:+20387978 | None:intergenic |
| AAATATGGGAAGGGCGATAC+CGG | 0.429102 | 8_4:-20387884 | Msa1318400:CDS |
| GAACTCTGATCCAAAACAAA+AGG | 0.430781 | 8_4:+20388075 | None:intergenic |
| TTCAAGTGATCCTCATTCTT+GGG | 0.430876 | 8_4:-20388331 | Msa1318400:CDS |
| AAATCCTGGAAGCTCATTCA+TGG | 0.431377 | 8_4:-20389944 | Msa1318400:CDS |
| CTCTTCTTATTGGGTGGCTG+TGG | 0.432373 | 8_4:-20389863 | Msa1318400:CDS |
| AATAATACTCCACTGATTTG+TGG | 0.437163 | 8_4:-20390187 | Msa1318400:CDS |
| AGAGAGACGCGAGTGGATAC+TGG | 0.442798 | 8_4:-20388025 | Msa1318400:CDS |
| CACAAAAGAGAAATATCATC+TGG | 0.445413 | 8_4:+20390160 | None:intergenic |
| GCATGGGACATTGTCACAAT+TGG | 0.459141 | 8_4:+20387649 | None:intergenic |
| AGCACTGTGGTTGTTGATGT+TGG | 0.464649 | 8_4:-20387916 | Msa1318400:CDS |
| TGAAGGCTGTCTCGAAAAGA+TGG | 0.470081 | 8_4:-20390102 | Msa1318400:CDS |
| TGGATCAGAGTTCGGGTACT+AGG | 0.474624 | 8_4:-20388065 | Msa1318400:CDS |
| GTTGGTGATATTGGAAATAT+GGG | 0.477547 | 8_4:-20387898 | Msa1318400:CDS |
| CTATATGCTATTGGTGGCAT+AGG | 0.479990 | 8_4:-20388360 | Msa1318400:CDS |
| GCATTTATATTATTGGAAAA+GGG | 0.482758 | 8_4:-20387942 | Msa1318400:CDS |
| GTGAGATGTCCAACCATTTG+TGG | 0.487502 | 8_4:+20388293 | None:intergenic |
| TTCCACCTCACGTCATGAAA+AGG | 0.490506 | 8_4:-20389919 | Msa1318400:CDS |
| CATGGATCTATGCTTTGTGC+AGG | 0.492337 | 8_4:-20390018 | Msa1318400:CDS |
| ACAATGCTTCTTTGAACTCG+TGG | 0.495071 | 8_4:-20389805 | Msa1318400:CDS |
| GTCTTCTGAATTAATTCCAA+TGG | 0.499101 | 8_4:-20390266 | Msa1318400:exon |
| AGTTCCTAGAAAATATCATT+CGG | 0.505984 | 8_4:-20390128 | Msa1318400:CDS |
| GTTGTATACGATCCATCAAA+TGG | 0.507083 | 8_4:-20388168 | Msa1318400:CDS |
| CAGACACCGACATGGTTTCA+GGG | 0.513817 | 8_4:-20388131 | Msa1318400:CDS |
| CGTCATGAAAAGGAAAGGAA+TGG | 0.514213 | 8_4:-20389909 | Msa1318400:CDS |
| ATGTCATTTGTGAACAATGA+AGG | 0.521789 | 8_4:+20387545 | None:intergenic |
| CTACCTCGTCAAGAAAATCC+TGG | 0.524735 | 8_4:-20389958 | Msa1318400:CDS |
| CCCTGCAAACTTGTTGCAGT+TGG | 0.525074 | 8_4:-20387970 | Msa1318400:CDS |
| ACATTGTCACAATTGGTGAC+AGG | 0.528710 | 8_4:+20387656 | None:intergenic |
| CAATGCTTCTTTGAACTCGT+GGG | 0.529590 | 8_4:-20389804 | Msa1318400:CDS |
| TTGATCCTTCCACAAATGGT+TGG | 0.534149 | 8_4:-20388302 | Msa1318400:CDS |
| CCGTCGTCTAAATGCTCCAT+TGG | 0.534448 | 8_4:+20390250 | None:intergenic |
| AATCCTGGAAGCTCATTCAT+GGG | 0.540754 | 8_4:-20389943 | Msa1318400:CDS |
| GTCATGAAAAGGAAAGGAAT+GGG | 0.545551 | 8_4:-20389908 | Msa1318400:CDS |
| CTACTTTGCTTGTGAAGCAA+TGG | 0.547084 | 8_4:-20388391 | Msa1318400:CDS |
| AACTCTGATCCAAAACAAAA+GGG | 0.547129 | 8_4:+20388076 | None:intergenic |
| CCAACTGCAACAAGTTTGCA+GGG | 0.547956 | 8_4:+20387970 | None:intergenic |
| AATATGGGAAGGGCGATACC+GGG | 0.551495 | 8_4:-20387883 | Msa1318400:CDS |
| CTGCTTCCTTGTCAACTGCT+AGG | 0.568618 | 8_4:-20389775 | Msa1318400:intron |
| AATAAGCTCTTCTTATTGGG+TGG | 0.572942 | 8_4:-20389869 | Msa1318400:CDS |
| GTGATATTGGAAATATGGGA+AGG | 0.573342 | 8_4:-20387894 | Msa1318400:CDS |
| AAAGAGAAATATCATCTGGA+AGG | 0.578717 | 8_4:+20390164 | None:intergenic |
| ACTTGGTTTGCAGCGAAGAG+TGG | 0.580873 | 8_4:-20390075 | Msa1318400:CDS |
| AGCATAAACTTGATGAGACA+TGG | 0.581062 | 8_4:-20390036 | Msa1318400:CDS |
| GAAGATTCAATAGTTATGGA+CGG | 0.582095 | 8_4:-20388243 | Msa1318400:CDS |
| TCAAAAGTATCCCAAGAATG+AGG | 0.583466 | 8_4:+20388321 | None:intergenic |
| ATTCCGTTGACAACAACTGC+AGG | 0.584997 | 8_4:+20388099 | None:intergenic |
| GGCTGTCTCGAAAAGATGGA+GGG | 0.589666 | 8_4:-20390098 | Msa1318400:CDS |
| GGTCCTGCAGTTGTTGTCAA+CGG | 0.619586 | 8_4:-20388102 | Msa1318400:CDS |
| TCTGGAAGGCCACAAATCAG+TGG | 0.621422 | 8_4:+20390178 | None:intergenic |
| CCTCACGTCATGAAAAGGAA+AGG | 0.622753 | 8_4:-20389914 | Msa1318400:CDS |
| AGAAATCCCTAATTCCGTGT+TGG | 0.626952 | 8_4:-20391110 | Msa1318400:intron |
| CGGGTACTAGGTTGACGATG+TGG | 0.627913 | 8_4:-20388053 | Msa1318400:CDS |
| TGATATTGGAAATATGGGAA+GGG | 0.630143 | 8_4:-20387893 | Msa1318400:CDS |
| CAGGGTGGTCTGGTAAGCAA+CGG | 0.630780 | 8_4:+20387988 | None:intergenic |
| GACATGGTTTCAGGGTGGAG+AGG | 0.635125 | 8_4:-20388123 | Msa1318400:CDS |
| GATGTCCAACCATTTGTGGA+AGG | 0.636239 | 8_4:+20388297 | None:intergenic |
| AGGCTGTCTCGAAAAGATGG+AGG | 0.640959 | 8_4:-20390099 | Msa1318400:CDS |
| TATTTACCTAGCAGTTGACA+AGG | 0.645117 | 8_4:+20389769 | None:intergenic |
| ATGGATCTATGCTTTGTGCA+GGG | 0.650304 | 8_4:-20390017 | Msa1318400:CDS |
| CCAATGGAGCATTTAGACGA+CGG | 0.656119 | 8_4:-20390250 | Msa1318400:CDS |
| TGGAAAAGGGCTTAGCACTG+TGG | 0.661995 | 8_4:-20387929 | Msa1318400:CDS |
| GCAACATGCAGACACCGACA+TGG | 0.663606 | 8_4:-20388139 | Msa1318400:CDS |
| TATACAACGGCATACACATG+AGG | 0.672079 | 8_4:+20388183 | None:intergenic |
| ATCCTGGAAGCTCATTCATG+GGG | 0.677577 | 8_4:-20389942 | Msa1318400:CDS |
| TCTCCACCCTGAAACCATGT+CGG | 0.677757 | 8_4:+20388125 | None:intergenic |
| GGCATAAAGAGAGACGCGAG+TGG | 0.682691 | 8_4:-20388032 | Msa1318400:CDS |
| AGGATTGAAACTCACCAACA+CGG | 0.682751 | 8_4:+20391096 | None:intergenic |
| ACGATCCATCAAATGGCACA+TGG | 0.684559 | 8_4:-20388161 | Msa1318400:CDS |
| TGTTGAGGCACATAGATGTG+TGG | 0.692330 | 8_4:-20387575 | Msa1318400:three_prime_UTR |
| TCATTTGTGAACAATGAAGG+TGG | 0.700318 | 8_4:+20387548 | None:intergenic |
| AGACGCGAGTGGATACTGGT+CGG | 0.708143 | 8_4:-20388021 | Msa1318400:CDS |
| GGCAAAATATACATCCGATG+TGG | 0.708393 | 8_4:-20388222 | Msa1318400:CDS |
| ATTTGATGGATCGTATACAA+CGG | 0.723109 | 8_4:+20388170 | None:intergenic |
| TTAAAGGAGATTTACCACAT+CGG | 0.724075 | 8_4:+20388208 | None:intergenic |
| AATTTCGGTATAGAAGAACC+CGG | 0.724097 | 8_4:+20387865 | None:intergenic |
| ACACCGACATGGTTTCAGGG+TGG | 0.734093 | 8_4:-20388128 | Msa1318400:CDS |
| ACTGCAACAAGTTTGCAGGG+TGG | 0.781995 | 8_4:+20387973 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTGTTTCATCTATTT+TGG | - | chr8_4:20387835-20387854 | Msa1318400:CDS | 15.0% |
| !!! | TTTTTTGTTTCATCTATTTT+GGG | - | chr8_4:20387836-20387855 | Msa1318400:CDS | 15.0% |
| !! | ATTTAAAAACTATCAACATT+TGG | - | chr8_4:20388001-20388020 | Msa1318400:CDS | 15.0% |
| !! | TGAAATATTGTAAAAGAAAA+TGG | + | chr8_4:20389016-20389035 | None:intergenic | 15.0% |
| !! | TTTACTTGGAAATAAATATT+TGG | - | chr8_4:20389240-20389259 | Msa1318400:intron | 15.0% |
| !! | TGAATGAAAATTGAAAATAA+GGG | - | chr8_4:20389280-20389299 | Msa1318400:intron | 15.0% |
| !!! | TTTGTATGATGATTTTATTA+AGG | - | chr8_4:20390959-20390978 | Msa1318400:intron | 15.0% |
| !!! | TTTAGTTTGATCAAGTTAAA+TGG | - | chr8_4:20387811-20387830 | Msa1318400:exon | 20.0% |
| !!! | TCACACATTTAACATTTTTA+AGG | + | chr8_4:20388191-20388210 | None:intergenic | 20.0% |
| !! | AATGAATTGAAATGATGATT+TGG | - | chr8_4:20388351-20388370 | Msa1318400:CDS | 20.0% |
| !!! | CATGTGTATTTTTATTTTTC+AGG | - | chr8_4:20388389-20388408 | Msa1318400:CDS | 20.0% |
| !!! | AAAACAGATCTAACATTTTT+TGG | - | chr8_4:20389035-20389054 | Msa1318400:intron | 20.0% |
| !!! | GATTTTCATAAACAATGTTT+TGG | + | chr8_4:20389075-20389094 | None:intergenic | 20.0% |
| !!! | AAATGTTATTTGAGTAAACA+TGG | - | chr8_4:20389208-20389227 | Msa1318400:intron | 20.0% |
| !! | GTGAATGAAAATTGAAAATA+AGG | - | chr8_4:20389279-20389298 | Msa1318400:intron | 20.0% |
| !! | ATAAATATGAAAGGAACAAA+TGG | + | chr8_4:20389392-20389411 | None:intergenic | 20.0% |
| !! | ATATTTAACTAGCACAAAAA+AGG | + | chr8_4:20389663-20389682 | None:intergenic | 20.0% |
| !! | TTAACTATTTACTATCTGTT+TGG | - | chr8_4:20389934-20389953 | Msa1318400:CDS | 20.0% |
| !! | TAACTATTTACTATCTGTTT+GGG | - | chr8_4:20389935-20389954 | Msa1318400:CDS | 20.0% |
| !! | ATGATTCTTATATTACAGTA+GGG | + | chr8_4:20390238-20390257 | None:intergenic | 20.0% |
| !! | AACTATTGAATCTTCAATTT+CGG | + | chr8_4:20390429-20390448 | None:intergenic | 20.0% |
| !! | AATTGAAGATTCAATAGTTA+TGG | - | chr8_4:20390430-20390449 | Msa1318400:intron | 20.0% |
| !!! | GGTAAAAGCATTTATATTAT+TGG | - | chr8_4:20390728-20390747 | Msa1318400:intron | 20.0% |
| !! | AGCATTTATATTATTGGAAA+AGG | - | chr8_4:20390734-20390753 | Msa1318400:intron | 20.0% |
| !! | GCATTTATATTATTGGAAAA+GGG | - | chr8_4:20390735-20390754 | Msa1318400:intron | 20.0% |
| !! | AAAAAGTAGAAAATTTGCAT+GGG | + | chr8_4:20391047-20391066 | None:intergenic | 20.0% |
| !! | TAAAAAGTAGAAAATTTGCA+TGG | + | chr8_4:20391048-20391067 | None:intergenic | 20.0% |
| ! | AATTATGAAGAAGAATGAAG+AGG | + | chr8_4:20387604-20387623 | None:intergenic | 25.0% |
| !! | ATTGAGATCTAAAACGAAAA+GGG | + | chr8_4:20387675-20387694 | None:intergenic | 25.0% |
| !! | AATTGAGATCTAAAACGAAA+AGG | + | chr8_4:20387676-20387695 | None:intergenic | 25.0% |
| ! | ATTACAGGGATAAACAAATT+GGG | - | chr8_4:20387713-20387732 | Msa1318400:three_prime_UTR | 25.0% |
| ! | CAATTGAATTGATAAAACCT+AGG | + | chr8_4:20387754-20387773 | None:intergenic | 25.0% |
| !!! | AGGTTTTATCAATTCAATTG+TGG | - | chr8_4:20387754-20387773 | Msa1318400:three_prime_UTR | 25.0% |
| !!! | GGTTTTATCAATTCAATTGT+GGG | - | chr8_4:20387755-20387774 | Msa1318400:three_prime_UTR | 25.0% |
| !!! | TTCATCTATTTTGGGATTTT+AGG | - | chr8_4:20387844-20387863 | Msa1318400:CDS | 25.0% |
| ! | GTAATACACTAACATGTATA+AGG | + | chr8_4:20387942-20387961 | None:intergenic | 25.0% |
| !! | AAAGAGATGAATTTTGTATC+AGG | - | chr8_4:20387973-20387992 | Msa1318400:CDS | 25.0% |
| !! | ACATTTGGATGATAATGTTT+AGG | - | chr8_4:20388016-20388035 | Msa1318400:CDS | 25.0% |
| ! | AGTTCCTAGAAAATATCATT+CGG | - | chr8_4:20388549-20388568 | Msa1318400:intron | 25.0% |
| !! | AAAACCGAATGATATTTTCT+AGG | + | chr8_4:20388556-20388575 | None:intergenic | 25.0% |
| !!! | AAAATATCATTCGGTTTTGA+AGG | - | chr8_4:20388558-20388577 | Msa1318400:intron | 25.0% |
| ! | TATTGTAAAAGAAAATGGTG+AGG | + | chr8_4:20389011-20389030 | None:intergenic | 25.0% |
| !! | TGATTTTCCTTCTCTTTTTT+TGG | - | chr8_4:20389606-20389625 | Msa1318400:intron | 25.0% |
| !! | GATTTTCCTTCTCTTTTTTT+GGG | - | chr8_4:20389607-20389626 | Msa1318400:intron | 25.0% |
| !!! | ATTTTCCTTCTCTTTTTTTG+GGG | - | chr8_4:20389608-20389627 | Msa1318400:intron | 25.0% |
| ! | TTGGCAAATTATCATTAATG+AGG | - | chr8_4:20389751-20389770 | Msa1318400:intron | 25.0% |
| !! | GTTTTATATTACTACTATCG+AGG | - | chr8_4:20389815-20389834 | Msa1318400:CDS | 25.0% |
| ! | AAGATGAATTAGAAAAAGAC+AGG | + | chr8_4:20389872-20389891 | None:intergenic | 25.0% |
| ! | GAATAGGAAAAAAAATGTGA+AGG | + | chr8_4:20390177-20390196 | None:intergenic | 25.0% |
| !!! | ATGCAATTTTAGCTTTGAAT+AGG | + | chr8_4:20390193-20390212 | None:intergenic | 25.0% |
| ! | TGATTCTTATATTACAGTAG+GGG | + | chr8_4:20390237-20390256 | None:intergenic | 25.0% |
| ! | CATGATTCTTATATTACAGT+AGG | + | chr8_4:20390239-20390258 | None:intergenic | 25.0% |
| ! | ACTATTGAATCTTCAATTTC+GGG | + | chr8_4:20390428-20390447 | None:intergenic | 25.0% |
| ! | TTGAGATCTAAAACGAAAAG+GGG | + | chr8_4:20387674-20387693 | None:intergenic | 30.0% |
| GATTACAGGGATAAACAAAT+TGG | - | chr8_4:20387712-20387731 | Msa1318400:three_prime_UTR | 30.0% | |
| TTACAGGGATAAACAAATTG+GGG | - | chr8_4:20387714-20387733 | Msa1318400:three_prime_UTR | 30.0% | |
| !! | CAAAATGGACTAGACATAAA+GGG | - | chr8_4:20387884-20387903 | Msa1318400:CDS | 30.0% |
| TACGTGTTAGAATTTCAGTT+TGG | - | chr8_4:20388289-20388308 | Msa1318400:CDS | 30.0% | |
| ACGTGTTAGAATTTCAGTTT+GGG | - | chr8_4:20388290-20388309 | Msa1318400:CDS | 30.0% | |
| ATTTCAGTTTGGGAACATAA+TGG | - | chr8_4:20388300-20388319 | Msa1318400:CDS | 30.0% | |
| !! | TTGAAATGATGATTTGGTGT+TGG | - | chr8_4:20388357-20388376 | Msa1318400:CDS | 30.0% |
| GTCTTCTGAATTAATTCCAA+TGG | - | chr8_4:20388411-20388430 | Msa1318400:intron | 30.0% | |
| !! | AATAATACTCCACTGATTTG+TGG | - | chr8_4:20388490-20388509 | Msa1318400:intron | 30.0% |
| AAAGAGAAATATCATCTGGA+AGG | + | chr8_4:20388516-20388535 | None:intergenic | 30.0% | |
| CACAAAAGAGAAATATCATC+TGG | + | chr8_4:20388520-20388539 | None:intergenic | 30.0% | |
| ! | TGATATTTCTCTTTTGTGTC+TGG | - | chr8_4:20388522-20388541 | Msa1318400:intron | 30.0% |
| ! | TCATGTTTACTGTTACGTTT+TGG | - | chr8_4:20388693-20388712 | Msa1318400:intron | 30.0% |
| GGAAATAAGCTCTTCTTATT+GGG | - | chr8_4:20388805-20388824 | Msa1318400:intron | 30.0% | |
| TGATTAACTTAGCTTCTGAA+GGG | + | chr8_4:20388947-20388966 | None:intergenic | 30.0% | |
| GAAAATGGTGAGGAAAATAT+AGG | + | chr8_4:20389001-20389020 | None:intergenic | 30.0% | |
| GAAAATCTATTCTTCCTAAC+TGG | - | chr8_4:20389088-20389107 | Msa1318400:intron | 30.0% | |
| AATTGTGATAGAGAGAACAT+GGG | + | chr8_4:20389117-20389136 | None:intergenic | 30.0% | |
| TAATTGTGATAGAGAGAACA+TGG | + | chr8_4:20389118-20389137 | None:intergenic | 30.0% | |
| !! | CATGGTCTTAGTATTTTACT+TGG | - | chr8_4:20389226-20389245 | Msa1318400:intron | 30.0% |
| TTCATTCACAGTAAAACTTG+TGG | + | chr8_4:20389268-20389287 | None:intergenic | 30.0% | |
| AAAATAAGGGTAGTGAGAAT+AGG | - | chr8_4:20389293-20389312 | Msa1318400:intron | 30.0% | |
| AAATAAGGGTAGTGAGAATA+GGG | - | chr8_4:20389294-20389313 | Msa1318400:intron | 30.0% | |
| ATATGAAAGGAACAAATGGA+GGG | + | chr8_4:20389388-20389407 | None:intergenic | 30.0% | |
| AATATGAAAGGAACAAATGG+AGG | + | chr8_4:20389389-20389408 | None:intergenic | 30.0% | |
| ATTTGATCTTTCACATGCTT+AGG | - | chr8_4:20389526-20389545 | Msa1318400:intron | 30.0% | |
| GTTCCTTAACTTCAAAAATG+TGG | - | chr8_4:20389569-20389588 | Msa1318400:intron | 30.0% | |
| !!! | GTACCACATTTTTGAAGTTA+AGG | + | chr8_4:20389575-20389594 | None:intergenic | 30.0% |
| !!! | TTTTCCTTCTCTTTTTTTGG+GGG | - | chr8_4:20389609-20389628 | Msa1318400:intron | 30.0% |
| ACATGCTTGTATATTTGACT+TGG | - | chr8_4:20389732-20389751 | Msa1318400:intron | 30.0% | |
| ATTACTACTATCGAGGAATA+AGG | - | chr8_4:20389822-20389841 | Msa1318400:CDS | 30.0% | |
| TATTTACTATCTGTTTGGGT+TGG | - | chr8_4:20389939-20389958 | Msa1318400:CDS | 30.0% | |
| !! | GTATTGATTAAGTGTGTGTT+TGG | + | chr8_4:20390084-20390103 | None:intergenic | 30.0% |
| CACTTAATCAATACCTACTT+TGG | - | chr8_4:20390090-20390109 | Msa1318400:CDS | 30.0% | |
| ! | ATGATAACAAGAGAGCATAT+GGG | + | chr8_4:20390117-20390136 | None:intergenic | 30.0% |
| !!! | TCCTTCACATTTTTTTTTCC+AGG | - | chr8_4:20390261-20390280 | Msa1318400:exon | 30.0% |
| ACCTGGAAAAAAAAATGTGA+AGG | + | chr8_4:20390265-20390284 | None:intergenic | 30.0% | |
| GACGAAAAACTATATGCTAT+TGG | - | chr8_4:20390308-20390327 | Msa1318400:intron | 30.0% | |
| GAAAAACTATATGCTATTGG+TGG | - | chr8_4:20390311-20390330 | Msa1318400:intron | 30.0% | |
| TCAATTTCGGGAACTATATT+AGG | + | chr8_4:20390416-20390435 | None:intergenic | 30.0% | |
| GAAGATTCAATAGTTATGGA+CGG | - | chr8_4:20390434-20390453 | Msa1318400:intron | 30.0% | |
| TTAAAGGAGATTTACCACAT+CGG | + | chr8_4:20390472-20390491 | None:intergenic | 30.0% | |
| ! | ATTTGATGGATCGTATACAA+CGG | + | chr8_4:20390510-20390529 | None:intergenic | 30.0% |
| AACTCTGATCCAAAACAAAA+GGG | + | chr8_4:20390604-20390623 | None:intergenic | 30.0% | |
| !!! | TTTTGTTTTGGATCAGAGTT+CGG | - | chr8_4:20390604-20390623 | Msa1318400:intron | 30.0% |
| !! | TGTTGGTGATATTGGAAATA+TGG | - | chr8_4:20390778-20390797 | Msa1318400:intron | 30.0% |
| !! | GTTGGTGATATTGGAAATAT+GGG | - | chr8_4:20390779-20390798 | Msa1318400:intron | 30.0% |
| TGATATTGGAAATATGGGAA+GGG | - | chr8_4:20390784-20390803 | Msa1318400:intron | 30.0% | |
| TTGTGATCAGAGACTAATTT+CGG | + | chr8_4:20390830-20390849 | None:intergenic | 30.0% | |
| !! | TGAGCAATTGATTTTTGTTG+AGG | - | chr8_4:20391087-20391106 | Msa1318400:intron | 30.0% |
| ! | ATGTCATTTGTGAACAATGA+AGG | + | chr8_4:20391135-20391154 | None:intergenic | 30.0% |
| AACCTTTGCTTTCGATTACA+GGG | - | chr8_4:20387699-20387718 | Msa1318400:three_prime_UTR | 35.0% | |
| TACAGGGATAAACAAATTGG+GGG | - | chr8_4:20387715-20387734 | Msa1318400:three_prime_UTR | 35.0% | |
| GTGTTTCAATGCTTGCAAAA+TGG | - | chr8_4:20387869-20387888 | Msa1318400:CDS | 35.0% | |
| !! | GCAAAATGGACTAGACATAA+AGG | - | chr8_4:20387883-20387902 | Msa1318400:CDS | 35.0% |
| GATTATGCTATGTCTTGATG+AGG | - | chr8_4:20388157-20388176 | Msa1318400:CDS | 35.0% | |
| TATGTCACATTTGCATGACA+AGG | + | chr8_4:20388215-20388234 | None:intergenic | 35.0% | |
| !!! | GTTCTTTTGACTTTAAGAGC+TGG | - | chr8_4:20388245-20388264 | Msa1318400:CDS | 35.0% |
| AGCATAAACTTGATGAGACA+TGG | - | chr8_4:20388641-20388660 | Msa1318400:intron | 35.0% | |
| GTCATGAAAAGGAAAGGAAT+GGG | - | chr8_4:20388769-20388788 | Msa1318400:intron | 35.0% | |
| GGGAAATAAGCTCTTCTTAT+TGG | - | chr8_4:20388804-20388823 | Msa1318400:intron | 35.0% | |
| AATAAGCTCTTCTTATTGGG+TGG | - | chr8_4:20388808-20388827 | Msa1318400:intron | 35.0% | |
| TATTTACCTAGCAGTTGACA+AGG | + | chr8_4:20388911-20388930 | None:intergenic | 35.0% | |
| GTGATTAACTTAGCTTCTGA+AGG | + | chr8_4:20388948-20388967 | None:intergenic | 35.0% | |
| ! | GAAAAAGACAGGTGTGTTTT+GGG | + | chr8_4:20389861-20389880 | None:intergenic | 35.0% |
| ! | AGAAAAAGACAGGTGTGTTT+TGG | + | chr8_4:20389862-20389881 | None:intergenic | 35.0% |
| GCTTAATTCTTTCAAAACGC+CGG | + | chr8_4:20390057-20390076 | None:intergenic | 35.0% | |
| GATTAAGTGTGTGTTTGGAA+TGG | + | chr8_4:20390079-20390098 | None:intergenic | 35.0% | |
| ! | TGATAACAAGAGAGCATATG+GGG | + | chr8_4:20390116-20390135 | None:intergenic | 35.0% |
| ! | CATGATAACAAGAGAGCATA+TGG | + | chr8_4:20390118-20390137 | None:intergenic | 35.0% |
| ! | CATATGCTCTCTTGTTATCA+TGG | - | chr8_4:20390116-20390135 | Msa1318400:CDS | 35.0% |
| ATTCAAGTGATCCTCATTCT+TGG | - | chr8_4:20390345-20390364 | Msa1318400:intron | 35.0% | |
| TTCAAGTGATCCTCATTCTT+GGG | - | chr8_4:20390346-20390365 | Msa1318400:intron | 35.0% | |
| !! | TCAAAAGTATCCCAAGAATG+AGG | + | chr8_4:20390359-20390378 | None:intergenic | 35.0% |
| ! | ACTTTTGATCCTTCCACAAA+TGG | - | chr8_4:20390371-20390390 | Msa1318400:intron | 35.0% |
| GTTGTATACGATCCATCAAA+TGG | - | chr8_4:20390509-20390528 | Msa1318400:intron | 35.0% | |
| GAACTCTGATCCAAAACAAA+AGG | + | chr8_4:20390605-20390624 | None:intergenic | 35.0% | |
| !!! | TTTGTTTTGGATCAGAGTTC+GGG | - | chr8_4:20390605-20390624 | Msa1318400:intron | 35.0% |
| !! | GTTGTTGATGTTGGTGATAT+TGG | - | chr8_4:20390770-20390789 | Msa1318400:intron | 35.0% |
| GTGATATTGGAAATATGGGA+AGG | - | chr8_4:20390783-20390802 | Msa1318400:intron | 35.0% | |
| AATTTCGGTATAGAAGAACC+CGG | + | chr8_4:20390815-20390834 | None:intergenic | 35.0% | |
| TCATTTGTGAACAATGAAGG+TGG | + | chr8_4:20391132-20391151 | None:intergenic | 35.0% | |
| AGAAATCCCTAATTCCGTGT+TGG | - | chr8_4:20387567-20387586 | Msa1318400:three_prime_UTR | 40.0% | |
| AACTCACCAACACGGAATTA+GGG | + | chr8_4:20387576-20387595 | None:intergenic | 40.0% | |
| AAACTCACCAACACGGAATT+AGG | + | chr8_4:20387577-20387596 | None:intergenic | 40.0% | |
| AGGATTGAAACTCACCAACA+CGG | + | chr8_4:20387584-20387603 | None:intergenic | 40.0% | |
| ! | GGGCAATCAAATTTGGTTTC+AGG | + | chr8_4:20387654-20387673 | None:intergenic | 40.0% |
| CGAAAAGGGGCAATCAAATT+TGG | + | chr8_4:20387661-20387680 | None:intergenic | 40.0% | |
| CAACCTTTGCTTTCGATTAC+AGG | - | chr8_4:20387698-20387717 | Msa1318400:three_prime_UTR | 40.0% | |
| ATCCCTGTAATCGAAAGCAA+AGG | + | chr8_4:20387704-20387723 | None:intergenic | 40.0% | |
| GGGGAAAATTCTCTAAACCT+AGG | - | chr8_4:20387734-20387753 | Msa1318400:three_prime_UTR | 40.0% | |
| ATGGATCTATGCTTTGTGCA+GGG | - | chr8_4:20388660-20388679 | Msa1318400:intron | 40.0% | |
| TGCTTTGTGCAGGGATAAAT+TGG | - | chr8_4:20388669-20388688 | Msa1318400:intron | 40.0% | |
| AAATCCTGGAAGCTCATTCA+TGG | - | chr8_4:20388733-20388752 | Msa1318400:intron | 40.0% | |
| AATCCTGGAAGCTCATTCAT+GGG | - | chr8_4:20388734-20388753 | Msa1318400:intron | 40.0% | |
| CGTCATGAAAAGGAAAGGAA+TGG | - | chr8_4:20388768-20388787 | Msa1318400:intron | 40.0% | |
| !!! | AGGAATGGGTTTTGAAGCTT+TGG | - | chr8_4:20388783-20388802 | Msa1318400:intron | 40.0% |
| !!! | GGAATGGGTTTTGAAGCTTT+GGG | - | chr8_4:20388784-20388803 | Msa1318400:intron | 40.0% |
| ACAATGCTTCTTTGAACTCG+TGG | - | chr8_4:20388872-20388891 | Msa1318400:intron | 40.0% | |
| CAATGCTTCTTTGAACTCGT+GGG | - | chr8_4:20388873-20388892 | Msa1318400:intron | 40.0% | |
| CCTATGTAGAATGCAACTGT+AGG | + | chr8_4:20389477-20389496 | None:intergenic | 40.0% | |
| CCTACAGTTGCATTCTACAT+AGG | - | chr8_4:20389474-20389493 | Msa1318400:intron | 40.0% | |
| ACAGTTGCATTCTACATAGG+CGG | - | chr8_4:20389477-20389496 | Msa1318400:intron | 40.0% | |
| AACTCCCCCAAAAAAAGAGA+AGG | + | chr8_4:20389616-20389635 | None:intergenic | 40.0% | |
| !!! | TTCTCTTTTTTTGGGGGAGT+TGG | - | chr8_4:20389615-20389634 | Msa1318400:intron | 40.0% |
| !!! | CATCTTTTTTGAAGCCTGCT+AGG | - | chr8_4:20389886-20389905 | Msa1318400:CDS | 40.0% |
| AAAACTTCCACTTTCCTAGC+AGG | + | chr8_4:20389903-20389922 | None:intergenic | 40.0% | |
| !! | TTACTATCTGTTTGGGTTGG+CGG | - | chr8_4:20389942-20389961 | Msa1318400:CDS | 40.0% |
| AAAGTAGCTCCTTGAAACGT+GGG | + | chr8_4:20389981-20390000 | None:intergenic | 40.0% | |
| AAAAGTAGCTCCTTGAAACG+TGG | + | chr8_4:20389982-20390001 | None:intergenic | 40.0% | |
| !!! | GTTTCAAGGAGCTACTTTTG+TGG | - | chr8_4:20389983-20390002 | Msa1318400:CDS | 40.0% |
| AATTCTTTCAAAACGCCGGT+AGG | + | chr8_4:20390053-20390072 | None:intergenic | 40.0% | |
| CTACTTTGCTTGTGAAGCAA+TGG | - | chr8_4:20390286-20390305 | Msa1318400:intron | 40.0% | |
| ! | CTATATGCTATTGGTGGCAT+AGG | - | chr8_4:20390317-20390336 | Msa1318400:intron | 40.0% |
| TTGATCCTTCCACAAATGGT+TGG | - | chr8_4:20390375-20390394 | Msa1318400:intron | 40.0% | |
| GGCAAAATATACATCCGATG+TGG | - | chr8_4:20390455-20390474 | Msa1318400:intron | 40.0% | |
| ! | GCATACACATGAGGTGTTAA+AGG | + | chr8_4:20390488-20390507 | None:intergenic | 40.0% |
| TATACAACGGCATACACATG+AGG | + | chr8_4:20390497-20390516 | None:intergenic | 40.0% | |
| !! | CAACGGAATCCCTTTTGTTT+TGG | - | chr8_4:20390592-20390611 | Msa1318400:intron | 40.0% |
| ! | ACATTGTCACAATTGGTGAC+AGG | + | chr8_4:20391024-20391043 | None:intergenic | 40.0% |
| ! | CCAATGGAGCATTTAGACGA+CGG | - | chr8_4:20388427-20388446 | Msa1318400:intron | 45.0% |
| TGAAGGCTGTCTCGAAAAGA+TGG | - | chr8_4:20388575-20388594 | Msa1318400:intron | 45.0% | |
| CATGGATCTATGCTTTGTGC+AGG | - | chr8_4:20388659-20388678 | Msa1318400:intron | 45.0% | |
| ! | CAGGATTTTCTTGACGAGGT+AGG | + | chr8_4:20388721-20388740 | None:intergenic | 45.0% |
| CTACCTCGTCAAGAAAATCC+TGG | - | chr8_4:20388719-20388738 | Msa1318400:intron | 45.0% | |
| ! | CTTCCAGGATTTTCTTGACG+AGG | + | chr8_4:20388725-20388744 | None:intergenic | 45.0% |
| ATCCTGGAAGCTCATTCATG+GGG | - | chr8_4:20388735-20388754 | Msa1318400:intron | 45.0% | |
| TTCCACCTCACGTCATGAAA+AGG | - | chr8_4:20388758-20388777 | Msa1318400:intron | 45.0% | |
| ! | TTCCTTTTCATGACGTGAGG+TGG | + | chr8_4:20388763-20388782 | None:intergenic | 45.0% |
| ! | CCTTTCCTTTTCATGACGTG+AGG | + | chr8_4:20388766-20388785 | None:intergenic | 45.0% |
| CCTCACGTCATGAAAAGGAA+AGG | - | chr8_4:20388763-20388782 | Msa1318400:intron | 45.0% | |
| TAAGGGTAGTGAGAATAGGG+AGG | - | chr8_4:20389297-20389316 | Msa1318400:intron | 45.0% | |
| TGAAAGGAACAAATGGAGGG+TGG | + | chr8_4:20389385-20389404 | None:intergenic | 45.0% | |
| ! | TTTGAAGCCTGCTAGGAAAG+TGG | - | chr8_4:20389893-20389912 | Msa1318400:CDS | 45.0% |
| AAAGCCAAACCCACGTTTCA+AGG | - | chr8_4:20389969-20389988 | Msa1318400:CDS | 45.0% | |
| !!! | TTCTAGCTTTTGCTGCAACG+TGG | - | chr8_4:20390024-20390043 | Msa1318400:CDS | 45.0% |
| TTCACAAGCAAAGTAGCACC+TGG | + | chr8_4:20390282-20390301 | None:intergenic | 45.0% | |
| GATGTCCAACCATTTGTGGA+AGG | + | chr8_4:20390383-20390402 | None:intergenic | 45.0% | |
| GTGAGATGTCCAACCATTTG+TGG | + | chr8_4:20390387-20390406 | None:intergenic | 45.0% | |
| ACGATCCATCAAATGGCACA+TGG | - | chr8_4:20390516-20390535 | Msa1318400:intron | 45.0% | |
| !! | TGTTGCCATGTGCCATTTGA+TGG | + | chr8_4:20390524-20390543 | None:intergenic | 45.0% |
| ATTCCGTTGACAACAACTGC+AGG | + | chr8_4:20390581-20390600 | None:intergenic | 45.0% | |
| CCAACTGCAACAAGTTTGCA+GGG | + | chr8_4:20390710-20390729 | None:intergenic | 45.0% | |
| ACCAACTGCAACAAGTTTGC+AGG | + | chr8_4:20390711-20390730 | None:intergenic | 45.0% | |
| AGCACTGTGGTTGTTGATGT+TGG | - | chr8_4:20390761-20390780 | Msa1318400:intron | 45.0% | |
| AAATATGGGAAGGGCGATAC+CGG | - | chr8_4:20390793-20390812 | Msa1318400:intron | 45.0% | |
| ! | GTCACAATTGGTGACAGGTT+TGG | + | chr8_4:20391019-20391038 | None:intergenic | 45.0% |
| GCATGGGACATTGTCACAAT+TGG | + | chr8_4:20391031-20391050 | None:intergenic | 45.0% | |
| TGTTGAGGCACATAGATGTG+TGG | - | chr8_4:20391102-20391121 | Msa1318400:intron | 45.0% | |
| !! | TAAAAAAATATAAATATGAA+AGG | + | chr8_4:20389401-20389420 | None:intergenic | 5.0% |
| CCGTCGTCTAAATGCTCCAT+TGG | + | chr8_4:20388430-20388449 | None:intergenic | 50.0% | |
| TCTGGAAGGCCACAAATCAG+TGG | + | chr8_4:20388502-20388521 | None:intergenic | 50.0% | |
| AGGCTGTCTCGAAAAGATGG+AGG | - | chr8_4:20388578-20388597 | Msa1318400:intron | 50.0% | |
| GGCTGTCTCGAAAAGATGGA+GGG | - | chr8_4:20388579-20388598 | Msa1318400:intron | 50.0% | |
| CTCGAAAAGATGGAGGGACT+TGG | - | chr8_4:20388585-20388604 | Msa1318400:intron | 50.0% | |
| !! | ACTTGGTTTGCAGCGAAGAG+TGG | - | chr8_4:20388602-20388621 | Msa1318400:intron | 50.0% |
| AACCCCATGAATGAGCTTCC+AGG | + | chr8_4:20388740-20388759 | None:intergenic | 50.0% | |
| CTCTTCTTATTGGGTGGCTG+TGG | - | chr8_4:20388814-20388833 | Msa1318400:intron | 50.0% | |
| CTGCTTCCTTGTCAACTGCT+AGG | - | chr8_4:20388902-20388921 | Msa1318400:intron | 50.0% | |
| ! | CTTCTGAAGGGAAAGTCGTG+AGG | + | chr8_4:20388935-20388954 | None:intergenic | 50.0% |
| GAGAACATGGGAAGCCAGTT+AGG | + | chr8_4:20389105-20389124 | None:intergenic | 50.0% | |
| GGTAGTGAGAATAGGGAGGA+AGG | - | chr8_4:20389301-20389320 | Msa1318400:intron | 50.0% | |
| ATGGAGGGTGGAAGTTGACA+AGG | + | chr8_4:20389373-20389392 | None:intergenic | 50.0% | |
| !! | AGGTGTGTTTTGGGCGTGAA+GGG | + | chr8_4:20389852-20389871 | None:intergenic | 50.0% |
| !! | TATCTGTTTGGGTTGGCGGT+GGG | - | chr8_4:20389946-20389965 | Msa1318400:CDS | 50.0% |
| AGCTCCTTGAAACGTGGGTT+TGG | + | chr8_4:20389976-20389995 | None:intergenic | 50.0% | |
| AGAGCATATGGGGCCAAAGT+AGG | + | chr8_4:20390106-20390125 | None:intergenic | 50.0% | |
| CAGACACCGACATGGTTTCA+GGG | - | chr8_4:20390546-20390565 | Msa1318400:intron | 50.0% | |
| TCTCCACCCTGAAACCATGT+CGG | + | chr8_4:20390555-20390574 | None:intergenic | 50.0% | |
| GGTCCTGCAGTTGTTGTCAA+CGG | - | chr8_4:20390575-20390594 | Msa1318400:intron | 50.0% | |
| TGGATCAGAGTTCGGGTACT+AGG | - | chr8_4:20390612-20390631 | Msa1318400:intron | 50.0% | |
| AACAAGTTTGCAGGGTGGTC+TGG | + | chr8_4:20390702-20390721 | None:intergenic | 50.0% | |
| ACTGCAACAAGTTTGCAGGG+TGG | + | chr8_4:20390707-20390726 | None:intergenic | 50.0% | |
| !! | CCCTGCAAACTTGTTGCAGT+TGG | - | chr8_4:20390707-20390726 | Msa1318400:intron | 50.0% |
| TGGAAAAGGGCTTAGCACTG+TGG | - | chr8_4:20390748-20390767 | Msa1318400:intron | 50.0% | |
| AATATGGGAAGGGCGATACC+GGG | - | chr8_4:20390794-20390813 | Msa1318400:intron | 50.0% | |
| TCTTATTGGGTGGCTGTGGC+TGG | - | chr8_4:20388818-20388837 | Msa1318400:intron | 55.0% | |
| !! | CAGGTGTGTTTTGGGCGTGA+AGG | + | chr8_4:20389853-20389872 | None:intergenic | 55.0% |
| !! | CTATCTGTTTGGGTTGGCGG+TGG | - | chr8_4:20389945-20389964 | Msa1318400:CDS | 55.0% |
| GCTGCAACGTGGTTTCCTAC+CGG | - | chr8_4:20390035-20390054 | Msa1318400:CDS | 55.0% | |
| GCAACATGCAGACACCGACA+TGG | - | chr8_4:20390538-20390557 | Msa1318400:intron | 55.0% | |
| GCAGACACCGACATGGTTTC+AGG | - | chr8_4:20390545-20390564 | Msa1318400:intron | 55.0% | |
| ACACCGACATGGTTTCAGGG+TGG | - | chr8_4:20390549-20390568 | Msa1318400:intron | 55.0% | |
| GACATGGTTTCAGGGTGGAG+AGG | - | chr8_4:20390554-20390573 | Msa1318400:intron | 55.0% | |
| ! | CGGGTACTAGGTTGACGATG+TGG | - | chr8_4:20390624-20390643 | Msa1318400:intron | 55.0% |
| GGCATAAAGAGAGACGCGAG+TGG | - | chr8_4:20390645-20390664 | Msa1318400:intron | 55.0% | |
| AGAGAGACGCGAGTGGATAC+TGG | - | chr8_4:20390652-20390671 | Msa1318400:intron | 55.0% | |
| AGACGCGAGTGGATACTGGT+CGG | - | chr8_4:20390656-20390675 | Msa1318400:intron | 55.0% | |
| CAGGGTGGTCTGGTAAGCAA+CGG | + | chr8_4:20390692-20390711 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 20387510 | 20391189 | 20387510 | ID=Msa1318400;Name=Msa1318400 |
| chr8_4 | mRNA | 20387510 | 20391189 | 20387510 | ID=Msa1318400-mRNA-1;Parent=Msa1318400;Name=Msa1318400-mRNA-1;_AED=0.10;_eAED=0.10;_QI=98|1|1|1|0.5|0.33|3|309|363 |
| chr8_4 | exon | 20387510 | 20388416 | 20387510 | ID=Msa1318400-mRNA-1:exon:7518;Parent=Msa1318400-mRNA-1 |
| chr8_4 | exon | 20389776 | 20390288 | 20389776 | ID=Msa1318400-mRNA-1:exon:7517;Parent=Msa1318400-mRNA-1 |
| chr8_4 | exon | 20391111 | 20391189 | 20391111 | ID=Msa1318400-mRNA-1:exon:7516;Parent=Msa1318400-mRNA-1 |
| chr8_4 | five_prime_UTR | 20391111 | 20391189 | 20391111 | ID=Msa1318400-mRNA-1:five_prime_utr;Parent=Msa1318400-mRNA-1 |
| chr8_4 | five_prime_UTR | 20390270 | 20390288 | 20390270 | ID=Msa1318400-mRNA-1:five_prime_utr;Parent=Msa1318400-mRNA-1 |
| chr8_4 | CDS | 20389776 | 20390269 | 20389776 | ID=Msa1318400-mRNA-1:cds;Parent=Msa1318400-mRNA-1 |
| chr8_4 | CDS | 20387819 | 20388416 | 20387819 | ID=Msa1318400-mRNA-1:cds;Parent=Msa1318400-mRNA-1 |
| chr8_4 | three_prime_UTR | 20387510 | 20387818 | 20387510 | ID=Msa1318400-mRNA-1:three_prime_utr;Parent=Msa1318400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
