Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1318410 | sp|Q9M2D2|YU88_ARATH | 64.894 | 376 | 124 | 2 | 37 | 405 | 32 | 406 | 1.39e-172 | 491 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1318410 | A0A396GMK3 | 97.073 | 410 | 11 | 1 | 1 | 409 | 1 | 410 | 0.0 | 820 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1278970 | Msa1318410 | 0.873163 | 1.819591e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1318410 | MtrunA17_Chr8g0349011 | 97.073 | 410 | 11 | 1 | 1 | 409 | 1 | 410 | 0.0 | 820 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1318410 | AT3G61320.1 | 64.894 | 376 | 124 | 2 | 37 | 405 | 32 | 406 | 1.41e-173 | 491 |
| Msa1318410 | AT3G61320.3 | 61.650 | 412 | 144 | 4 | 4 | 405 | 60 | 467 | 3.36e-173 | 493 |
| Msa1318410 | AT2G45870.1 | 60.000 | 380 | 147 | 3 | 34 | 409 | 32 | 410 | 1.10e-160 | 458 |
| Msa1318410 | AT3G61320.4 | 66.873 | 323 | 99 | 2 | 37 | 352 | 32 | 353 | 2.58e-150 | 430 |
| Msa1318410 | AT2G45870.3 | 62.848 | 323 | 115 | 3 | 34 | 352 | 32 | 353 | 1.84e-140 | 405 |
| Msa1318410 | AT3G61320.2 | 57.093 | 289 | 110 | 4 | 4 | 282 | 60 | 344 | 4.48e-100 | 302 |
| Msa1318410 | AT2G45870.2 | 56.863 | 255 | 105 | 3 | 34 | 284 | 32 | 285 | 1.67e-91 | 278 |
Find 110 sgRNAs with CRISPR-Local
Find 265 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGCTTCTTGAATGTCTTTC+TGG | 0.021380 | 8_4:+20399416 | None:intergenic |
| AGGAGGTGTGTGTGGCATTT+TGG | 0.125505 | 8_4:+20402355 | None:intergenic |
| TGTGAGTTTGATTTGGTTAT+TGG | 0.165006 | 8_4:+20402399 | None:intergenic |
| AGTTTATATTTACATGATTA+TGG | 0.170266 | 8_4:+20399064 | None:intergenic |
| TGGCTTATGTGAACAGCTTC+TGG | 0.202848 | 8_4:-20400554 | Msa1318410:CDS |
| AGCAAAATTCTCTTCCATTT+AGG | 0.207491 | 8_4:+20399306 | None:intergenic |
| CTTCAAGGTTTCTTGTCTTA+TGG | 0.213922 | 8_4:-20400498 | Msa1318410:CDS |
| GCATTCCTCGTTCTTGGTTT+TGG | 0.221817 | 8_4:+20402206 | None:intergenic |
| TGTACGGAGGAGGGTGATTA+TGG | 0.237196 | 8_4:+20402246 | None:intergenic |
| GTGAGTTTGATTTGGTTATT+GGG | 0.275198 | 8_4:+20402400 | None:intergenic |
| GAATGTCTTTCTGGGCCTTT+TGG | 0.278304 | 8_4:+20399425 | None:intergenic |
| GAGCATTCGGCTACTAAAAT+TGG | 0.287044 | 8_4:-20400833 | Msa1318410:CDS |
| TTGGGGTGAATTGGGAAGTT+AGG | 0.291376 | 8_4:+20402374 | None:intergenic |
| CACTCTACAACCACACAAAC+TGG | 0.292794 | 8_4:-20402171 | Msa1318410:CDS |
| AAATCTATCCATAGTGCTTT+AGG | 0.304951 | 8_4:-20399129 | Msa1318410:three_prime_UTR |
| TCCTGCTCTTGCGTTGCTAT+TGG | 0.308883 | 8_4:-20401942 | Msa1318410:CDS |
| TGGCTGGCCTAGCTCCTAAA+TGG | 0.330706 | 8_4:-20399320 | Msa1318410:exon |
| AGGGGAGGAGGGTTAGTTGT+TGG | 0.339455 | 8_4:+20402332 | None:intergenic |
| TGCTTCTTGAATGTCTTTCT+GGG | 0.339634 | 8_4:+20399417 | None:intergenic |
| CATATACCCGTCTTACTTCA+AGG | 0.343283 | 8_4:-20400513 | Msa1318410:CDS |
| ACTTGTTTCCATGATGGAAT+TGG | 0.348735 | 8_4:-20400574 | Msa1318410:CDS |
| CAATCATCCCAAAGTATGAT+AGG | 0.352692 | 8_4:+20400463 | None:intergenic |
| ACCAGATTGAGGATTTCTTT+AGG | 0.357650 | 8_4:-20399162 | Msa1318410:three_prime_UTR |
| CAAAGAGGCAGCACTGATAA+AGG | 0.360465 | 8_4:+20400417 | None:intergenic |
| GGAGGAGGGTTAGTTGTTGG+AGG | 0.360905 | 8_4:+20402335 | None:intergenic |
| TACTTTGGGATGATTGTCAT+TGG | 0.371618 | 8_4:-20400456 | Msa1318410:CDS |
| AAGAATACCTTAAGAACAAT+AGG | 0.378297 | 8_4:+20401749 | None:intergenic |
| TTAGGTTTGTGAGTTTGATT+TGG | 0.383930 | 8_4:+20402392 | None:intergenic |
| GTAAGACGGGTATATGATAA+TGG | 0.392031 | 8_4:+20400520 | None:intergenic |
| GGAGGGTTAGTTGTTGGAGG+AGG | 0.392317 | 8_4:+20402338 | None:intergenic |
| CGTCTGGTTCCATTACTTGC+CGG | 0.396905 | 8_4:-20402014 | Msa1318410:CDS |
| GACGCTCCCTATCATACTTT+GGG | 0.402973 | 8_4:-20400470 | Msa1318410:CDS |
| AAATTGGTTGGTGTGGTGGG+TGG | 0.407282 | 8_4:+20402512 | None:intergenic |
| TGACGCTCCCTATCATACTT+TGG | 0.409664 | 8_4:-20400471 | Msa1318410:CDS |
| AGTTTATATCACAGAGCATT+CGG | 0.423636 | 8_4:-20400846 | Msa1318410:CDS |
| AATATACTCCTAAAGCACTA+TGG | 0.425954 | 8_4:+20399121 | None:intergenic |
| GGCTTATGTGAACAGCTTCT+GGG | 0.429998 | 8_4:-20400553 | Msa1318410:CDS |
| TCCTAAAGAAATCCTCAATC+TGG | 0.432503 | 8_4:+20399161 | None:intergenic |
| GCAGGAGCAGTAAGCTGATA+AGG | 0.432959 | 8_4:+20401959 | None:intergenic |
| AAAGAAGTGAAGAAGAGAAC+AGG | 0.435786 | 8_4:+20402067 | None:intergenic |
| GATGAAGGGGAGAGGGGAGT+TGG | 0.439065 | 8_4:+20402485 | None:intergenic |
| TTAAGTGCAAGCATTGGAAA+TGG | 0.446400 | 8_4:+20399457 | None:intergenic |
| TAGCCACATTAATTGTGGTT+AGG | 0.453740 | 8_4:-20399228 | Msa1318410:three_prime_UTR |
| TGATTTGGTTATTGGGAGGA+TGG | 0.458733 | 8_4:+20402407 | None:intergenic |
| TTCTCTTCCATTTAGGAGCT+AGG | 0.463417 | 8_4:+20399313 | None:intergenic |
| CCGCTTACAACTCCGCCGTC+TGG | 0.465961 | 8_4:-20402030 | Msa1318410:CDS |
| AGCGAAGAAGCTCGTAGCAC+AGG | 0.467896 | 8_4:+20401983 | None:intergenic |
| AATTGGTTGGTGTGGTGGGT+GGG | 0.468052 | 8_4:+20402513 | None:intergenic |
| ATGCAGTGTCATGTGTTGTA+TGG | 0.471216 | 8_4:-20400961 | Msa1318410:intron |
| CGGGTATATGATAATGGAAT+CGG | 0.481479 | 8_4:+20400526 | None:intergenic |
| AAGATCACTTGTTTCCATGA+TGG | 0.486583 | 8_4:-20400580 | Msa1318410:CDS |
| TATTGATGATGAAGGGGAGA+GGG | 0.488171 | 8_4:+20402478 | None:intergenic |
| TCCTCCGTACAATCCCAGAC+TGG | 0.489039 | 8_4:-20402234 | Msa1318410:CDS |
| ACCAATAGCAACGCAAGAGC+AGG | 0.492418 | 8_4:+20401941 | None:intergenic |
| GTTGAGAATATTGATGATGA+AGG | 0.492636 | 8_4:+20402470 | None:intergenic |
| GCTACACTTGCACCAGATTG+AGG | 0.498225 | 8_4:-20399173 | Msa1318410:three_prime_UTR |
| TTGTTGAAGGGAAGAAAGCT+TGG | 0.502301 | 8_4:-20401889 | Msa1318410:CDS |
| TCTAAAGAGCATTCACCAAA+TGG | 0.503162 | 8_4:-20399340 | Msa1318410:CDS |
| TCTTATGCTAGATTTGTTGA+AGG | 0.508587 | 8_4:-20401902 | Msa1318410:CDS |
| GGATTCTAGAAGAAGTATCT+TGG | 0.512856 | 8_4:-20400809 | Msa1318410:intron |
| CATTCGGCTACTAAAATTGG+AGG | 0.521365 | 8_4:-20400830 | Msa1318410:CDS |
| CTGCCCAGTCTGGGATTGTA+CGG | 0.524923 | 8_4:+20402230 | None:intergenic |
| ATTGATGATGAAGGGGAGAG+GGG | 0.528270 | 8_4:+20402479 | None:intergenic |
| AAGCACTATGGATAGATTTG+AGG | 0.528579 | 8_4:+20399133 | None:intergenic |
| TTGTATAGCCACATTAATTG+TGG | 0.530594 | 8_4:-20399233 | Msa1318410:three_prime_UTR |
| AGTCTGGGATTGTACGGAGG+AGG | 0.530882 | 8_4:+20402236 | None:intergenic |
| GTAGGTTGGAGTTCTTATAG+AGG | 0.537255 | 8_4:-20399482 | Msa1318410:intron |
| GGACGTGACGGAGGGAGGAA+CGG | 0.537581 | 8_4:+20402140 | None:intergenic |
| ACTTAATGATCTCTGCCAAA+AGG | 0.538988 | 8_4:-20399440 | Msa1318410:CDS |
| TTGAGAATATTGATGATGAA+GGG | 0.539364 | 8_4:+20402471 | None:intergenic |
| AAGAGCATTCACCAAATGGC+TGG | 0.548531 | 8_4:-20399336 | Msa1318410:CDS |
| AGTATATTCTGCTAATGTAG+TGG | 0.549596 | 8_4:-20399106 | Msa1318410:three_prime_UTR |
| GTTGTTGGAGGAGGTGTGTG+TGG | 0.549919 | 8_4:+20402347 | None:intergenic |
| CAAGAAACCTTGAAGTAAGA+CGG | 0.551894 | 8_4:+20400506 | None:intergenic |
| CTTATGCTAGATTTGTTGAA+GGG | 0.552693 | 8_4:-20401901 | Msa1318410:CDS |
| GCAGCACTGATAAAGGTAGC+AGG | 0.553615 | 8_4:+20400424 | None:intergenic |
| AAGAAACCTTGAAGTAAGAC+GGG | 0.556854 | 8_4:+20400507 | None:intergenic |
| CACATAAGCCAATTCCATCA+TGG | 0.557282 | 8_4:+20400566 | None:intergenic |
| TTGAGATGGTGAAAGAGAAG+AGG | 0.560320 | 8_4:+20402434 | None:intergenic |
| TACTGTTGATGTGAGTGGGA+AGG | 0.560902 | 8_4:-20401819 | Msa1318410:CDS |
| ACTGTTGATGTGAGTGGGAA+GGG | 0.565384 | 8_4:-20401818 | Msa1318410:CDS |
| GTATATTCTGCTAATGTAGT+GGG | 0.565506 | 8_4:-20399105 | Msa1318410:three_prime_UTR |
| GAAGTGAAGAAGAGAACAGG+AGG | 0.569132 | 8_4:+20402070 | None:intergenic |
| AGATCATTAAGTGCAAGCAT+TGG | 0.571323 | 8_4:+20399451 | None:intergenic |
| AATCATCCCAAAGTATGATA+GGG | 0.572755 | 8_4:+20400464 | None:intergenic |
| TGGCTACTGTTGATGTGAGT+GGG | 0.573291 | 8_4:-20401823 | Msa1318410:CDS |
| ATATTGATGATGAAGGGGAG+AGG | 0.580079 | 8_4:+20402477 | None:intergenic |
| AGTTTGATTTGGTTATTGGG+AGG | 0.587844 | 8_4:+20402403 | None:intergenic |
| AAAAGTGACGGACGTGACGG+AGG | 0.590330 | 8_4:+20402131 | None:intergenic |
| AAAGTGACGGACGTGACGGA+GGG | 0.591206 | 8_4:+20402132 | None:intergenic |
| TTGGTGAATGCTCTTTAGAG+TGG | 0.597298 | 8_4:+20399344 | None:intergenic |
| ACTCTACAACCACACAAACT+GGG | 0.602994 | 8_4:-20402170 | Msa1318410:CDS |
| GTGACGGACGTGACGGAGGG+AGG | 0.604004 | 8_4:+20402135 | None:intergenic |
| GTCTGGGATTGTACGGAGGA+GGG | 0.608407 | 8_4:+20402237 | None:intergenic |
| ATGGCTACTGTTGATGTGAG+TGG | 0.618185 | 8_4:-20401824 | Msa1318410:CDS |
| TGAGAATATTGATGATGAAG+GGG | 0.622844 | 8_4:+20402472 | None:intergenic |
| GGGAGGATGGTACATTGAGA+TGG | 0.625123 | 8_4:+20402420 | None:intergenic |
| GTTCCTAACCACAATTAATG+TGG | 0.626611 | 8_4:+20399225 | None:intergenic |
| TTCTTCAATGCAGAACAAAG+AGG | 0.637682 | 8_4:+20400402 | None:intergenic |
| GGTGTGTGACCCAGTTTGTG+TGG | 0.646028 | 8_4:+20402161 | None:intergenic |
| GAACAGGAGGGACTAAAGAG+AGG | 0.649071 | 8_4:+20402083 | None:intergenic |
| GTTGTAAGCGGCGATGACAG+CGG | 0.654951 | 8_4:+20402042 | None:intergenic |
| CCAGACGGCGGAGTTGTAAG+CGG | 0.658004 | 8_4:+20402030 | None:intergenic |
| CCCAGTCTGGGATTGTACGG+AGG | 0.658078 | 8_4:+20402233 | None:intergenic |
| AAGTGAAGAAGAGAACAGGA+GGG | 0.692777 | 8_4:+20402071 | None:intergenic |
| TAAAGAGAGGATGACACGTG+AGG | 0.708230 | 8_4:+20402096 | None:intergenic |
| CAAGTAATGGAACCAGACGG+CGG | 0.715460 | 8_4:+20402018 | None:intergenic |
| CGGCAAGTAATGGAACCAGA+CGG | 0.716242 | 8_4:+20402015 | None:intergenic |
| GCAGACCAAAACCAAGAACG+AGG | 0.744295 | 8_4:-20402211 | Msa1318410:CDS |
| ATAAACTCAATAATGCAGCG+AGG | 0.784829 | 8_4:+20400862 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATGTTTAAATTTGT+TGG | + | chr8_4:20401568-20401587 | None:intergenic | 10.0% |
| !! | ATTAAATATTTGGTATATTA+TGG | - | chr8_4:20401825-20401844 | Msa1318410:CDS | 10.0% |
| !!! | AAAATTTCAATAATTACTTT+TGG | + | chr8_4:20402038-20402057 | None:intergenic | 10.0% |
| !! | ATAAAACAAACCAAAATTAA+GGG | + | chr8_4:20400184-20400203 | None:intergenic | 15.0% |
| !! | AATAAAACAAACCAAAATTA+AGG | + | chr8_4:20400185-20400204 | None:intergenic | 15.0% |
| !! | ATTATATCATTAGGAAAAAA+GGG | + | chr8_4:20400392-20400411 | None:intergenic | 15.0% |
| !! | TTGATATATTTAAATAGTCT+AGG | + | chr8_4:20401260-20401279 | None:intergenic | 15.0% |
| !!! | GATGATAGTTTTTTTTTTTA+AGG | - | chr8_4:20401356-20401375 | Msa1318410:intron | 15.0% |
| !!! | AATTTTTTTGGAATATCTTA+TGG | - | chr8_4:20401785-20401804 | Msa1318410:CDS | 15.0% |
| !! | TACCAAATATTTAATATGTA+AGG | + | chr8_4:20401820-20401839 | None:intergenic | 15.0% |
| !! | AGTTTATATTTACATGATTA+TGG | + | chr8_4:20402551-20402570 | None:intergenic | 15.0% |
| !! | TAGTTATAAGTTATGAAACA+TGG | - | chr8_4:20399957-20399976 | Msa1318410:intron | 20.0% |
| !!! | TGTGTTTAAGTTTTTAAAGT+TGG | - | chr8_4:20400214-20400233 | Msa1318410:intron | 20.0% |
| !!! | GTAATGTTTTATGAAGTTTT+AGG | - | chr8_4:20400286-20400305 | Msa1318410:intron | 20.0% |
| !! | TTATATCATTAGGAAAAAAG+GGG | + | chr8_4:20400391-20400410 | None:intergenic | 20.0% |
| !! | CATTATATCATTAGGAAAAA+AGG | + | chr8_4:20400393-20400412 | None:intergenic | 20.0% |
| !!! | TTTTCCTAATGATATAATGA+AGG | - | chr8_4:20400394-20400413 | Msa1318410:intron | 20.0% |
| !! | TTTCCTAATGATATAATGAA+GGG | - | chr8_4:20400395-20400414 | Msa1318410:intron | 20.0% |
| !! | TTGCTATATCATTGATAAAA+GGG | + | chr8_4:20400535-20400554 | None:intergenic | 20.0% |
| !!! | TTTGCTATATCATTGATAAA+AGG | + | chr8_4:20400536-20400555 | None:intergenic | 20.0% |
| !!! | TTGTATAGAGTAAACTTTTT+GGG | - | chr8_4:20400581-20400600 | Msa1318410:CDS | 20.0% |
| !! | CAAAACTACATATTGAATTT+AGG | - | chr8_4:20400851-20400870 | Msa1318410:CDS | 20.0% |
| !!! | AATTAATTTAAGGGTAGTTT+TGG | - | chr8_4:20401482-20401501 | Msa1318410:intron | 20.0% |
| !! | ACAAACAAATGTTAAAAGAT+AGG | - | chr8_4:20401701-20401720 | Msa1318410:intron | 20.0% |
| !! | GTCCTTACATATTAAATATT+TGG | - | chr8_4:20401815-20401834 | Msa1318410:CDS | 20.0% |
| !! | TTCATCTGTTAAAATAGATT+TGG | - | chr8_4:20401982-20402001 | Msa1318410:CDS | 20.0% |
| !!! | AATTTTCACTGTTAAAATGA+TGG | - | chr8_4:20402052-20402071 | Msa1318410:CDS | 20.0% |
| !!! | TTGAGAATATTGATGATGAA+GGG | + | chr8_4:20399144-20399163 | None:intergenic | 25.0% |
| ! | AAGAATACCTTAAGAACAAT+AGG | + | chr8_4:20399866-20399885 | None:intergenic | 25.0% |
| ! | TTGAGGTTAAAATAGTTCAA+CGG | - | chr8_4:20400147-20400166 | Msa1318410:intron | 25.0% |
| !!! | TGTTTTATGAAGTTTTAGGA+TGG | - | chr8_4:20400290-20400309 | Msa1318410:intron | 25.0% |
| !!! | TTGTTTAGAGCAAGTTTTTT+GGG | - | chr8_4:20400440-20400459 | Msa1318410:CDS | 25.0% |
| !! | GTTGTATAGAGTAAACTTTT+TGG | - | chr8_4:20400580-20400599 | Msa1318410:CDS | 25.0% |
| ! | AACACATAAATTTACGTTTC+TGG | + | chr8_4:20400906-20400925 | None:intergenic | 25.0% |
| !! | TGAAATTAGGTATTTTCTGA+TGG | + | chr8_4:20401325-20401344 | None:intergenic | 25.0% |
| ! | TAATCTACCCCTAATTATAA+TGG | - | chr8_4:20401437-20401456 | Msa1318410:intron | 25.0% |
| ! | AGTCAAATATAAGCAAATGT+TGG | + | chr8_4:20401545-20401564 | None:intergenic | 25.0% |
| !!! | AGTGGACTGTATAATTTTTT+TGG | - | chr8_4:20401773-20401792 | Msa1318410:CDS | 25.0% |
| !!! | AAATTAAAGTCTCTAGCTTT+GGG | + | chr8_4:20401877-20401896 | None:intergenic | 25.0% |
| ! | ATGTGAAAAATGATTGATGT+AGG | - | chr8_4:20402112-20402131 | Msa1318410:CDS | 25.0% |
| !! | TTCTTCAATTTTTGCTTATG+AGG | - | chr8_4:20402338-20402357 | Msa1318410:CDS | 25.0% |
| !! | TGAGAATATTGATGATGAAG+GGG | + | chr8_4:20399143-20399162 | None:intergenic | 30.0% |
| !! | GTTGAGAATATTGATGATGA+AGG | + | chr8_4:20399145-20399164 | None:intergenic | 30.0% |
| !! | GTGAGTTTGATTTGGTTATT+GGG | + | chr8_4:20399215-20399234 | None:intergenic | 30.0% |
| !! | TGTGAGTTTGATTTGGTTAT+TGG | + | chr8_4:20399216-20399235 | None:intergenic | 30.0% |
| TTAGGTTTGTGAGTTTGATT+TGG | + | chr8_4:20399223-20399242 | None:intergenic | 30.0% | |
| ! | TTATGGTTTTTATTGGGGTT+GGG | + | chr8_4:20399352-20399371 | None:intergenic | 30.0% |
| ! | ATTATGGTTTTTATTGGGGT+TGG | + | chr8_4:20399353-20399372 | None:intergenic | 30.0% |
| ! | GGTGATTATGGTTTTTATTG+GGG | + | chr8_4:20399357-20399376 | None:intergenic | 30.0% |
| ! | GGGTGATTATGGTTTTTATT+GGG | + | chr8_4:20399358-20399377 | None:intergenic | 30.0% |
| ! | AGGGTGATTATGGTTTTTAT+TGG | + | chr8_4:20399359-20399378 | None:intergenic | 30.0% |
| !! | TCTTATGCTAGATTTGTTGA+AGG | - | chr8_4:20399710-20399729 | Msa1318410:intron | 30.0% |
| !! | CTTATGCTAGATTTGTTGAA+GGG | - | chr8_4:20399711-20399730 | Msa1318410:intron | 30.0% |
| !!! | TGATTTTGCTAGACTTGTTA+TGG | - | chr8_4:20399769-20399788 | Msa1318410:intron | 30.0% |
| ! | TGCTTTTCCTATTGTTCTTA+AGG | - | chr8_4:20399856-20399875 | Msa1318410:intron | 30.0% |
| ATAACTAATGCAATAACAGC+AGG | + | chr8_4:20399944-20399963 | None:intergenic | 30.0% | |
| TAAAATAGTTCAACGGTCAT+TGG | - | chr8_4:20400154-20400173 | Msa1318410:intron | 30.0% | |
| AAAATAGTTCAACGGTCATT+GGG | - | chr8_4:20400155-20400174 | Msa1318410:intron | 30.0% | |
| GTTACTACATGATAGTTCAA+TGG | - | chr8_4:20400236-20400255 | Msa1318410:intron | 30.0% | |
| ! | GTTGAGTTTTTACATGCTTA+TGG | - | chr8_4:20400336-20400355 | Msa1318410:intron | 30.0% |
| ACACCCTTCATTATATCATT+AGG | + | chr8_4:20400401-20400420 | None:intergenic | 30.0% | |
| !!! | GTTGTTTAGAGCAAGTTTTT+TGG | - | chr8_4:20400439-20400458 | Msa1318410:CDS | 30.0% |
| AGTCTTAAGTCTGAACAAAA+TGG | + | chr8_4:20400508-20400527 | None:intergenic | 30.0% | |
| !! | CTGCATTGAAAGTATTCAAA+TGG | + | chr8_4:20400637-20400656 | None:intergenic | 30.0% |
| ! | AGTTTATATCACAGAGCATT+CGG | - | chr8_4:20400766-20400785 | Msa1318410:intron | 30.0% |
| CGTAAATTTATGTGTTTCCT+TGG | - | chr8_4:20400910-20400929 | Msa1318410:CDS | 30.0% | |
| AATTTGTATCCAACACTTCT+TGG | + | chr8_4:20400944-20400963 | None:intergenic | 30.0% | |
| TTCAAACATTTCCCTATTTG+CGG | - | chr8_4:20400998-20401017 | Msa1318410:intron | 30.0% | |
| AATCATCCCAAAGTATGATA+GGG | + | chr8_4:20401151-20401170 | None:intergenic | 30.0% | |
| ! | AATAGTCTAGGATTGAAGTA+AGG | + | chr8_4:20401248-20401267 | None:intergenic | 30.0% |
| ACCTAATTTCACACTTACTA+AGG | - | chr8_4:20401334-20401353 | Msa1318410:intron | 30.0% | |
| TCCTTAGTAAGTGTGAAATT+AGG | + | chr8_4:20401338-20401357 | None:intergenic | 30.0% | |
| CAGATGACCATTATAATTAG+GGG | + | chr8_4:20401447-20401466 | None:intergenic | 30.0% | |
| GCAGATGACCATTATAATTA+GGG | + | chr8_4:20401448-20401467 | None:intergenic | 30.0% | |
| AGCAGATGACCATTATAATT+AGG | + | chr8_4:20401449-20401468 | None:intergenic | 30.0% | |
| TCTTTCCTTTGTAATTCATC+AGG | - | chr8_4:20401661-20401680 | Msa1318410:intron | 30.0% | |
| TTTCACCTGATGAATTACAA+AGG | + | chr8_4:20401669-20401688 | None:intergenic | 30.0% | |
| ! | CAAATTAAAGTCTCTAGCTT+TGG | + | chr8_4:20401878-20401897 | None:intergenic | 30.0% |
| !! | GTTTTGCACTGATAGAAATT+TGG | - | chr8_4:20401897-20401916 | Msa1318410:CDS | 30.0% |
| CAACTTGTGTGATTTCAATA+TGG | + | chr8_4:20401933-20401952 | None:intergenic | 30.0% | |
| GAAAAATGATTGATGTAGGT+TGG | - | chr8_4:20402116-20402135 | Msa1318410:CDS | 30.0% | |
| AGCAAAATTCTCTTCCATTT+AGG | + | chr8_4:20402309-20402328 | None:intergenic | 30.0% | |
| ! | TTCAATTTTTGCTTATGAGG+TGG | - | chr8_4:20402341-20402360 | Msa1318410:CDS | 30.0% |
| TTGTATAGCCACATTAATTG+TGG | - | chr8_4:20402379-20402398 | Msa1318410:CDS | 30.0% | |
| AAATCTATCCATAGTGCTTT+AGG | - | chr8_4:20402483-20402502 | Msa1318410:five_prime_UTR | 30.0% | |
| ! | AATATACTCCTAAAGCACTA+TGG | + | chr8_4:20402494-20402513 | None:intergenic | 30.0% |
| AGTATATTCTGCTAATGTAG+TGG | - | chr8_4:20402506-20402525 | Msa1318410:five_prime_UTR | 30.0% | |
| GTATATTCTGCTAATGTAGT+GGG | - | chr8_4:20402507-20402526 | Msa1318410:five_prime_UTR | 30.0% | |
| ! | TAAAAATTGGTTGGTGTGGT+GGG | + | chr8_4:20399106-20399125 | None:intergenic | 35.0% |
| ! | TTAAAAATTGGTTGGTGTGG+TGG | + | chr8_4:20399107-20399126 | None:intergenic | 35.0% |
| ! | TGGTTAAAAATTGGTTGGTG+TGG | + | chr8_4:20399110-20399129 | None:intergenic | 35.0% |
| ! | GGAGTTGGTTAAAAATTGGT+TGG | + | chr8_4:20399115-20399134 | None:intergenic | 35.0% |
| !! | AGTTTGATTTGGTTATTGGG+AGG | + | chr8_4:20399212-20399231 | None:intergenic | 35.0% |
| !! | TGTTTGTAGGATTTTGAGGA+GGG | + | chr8_4:20399302-20399321 | None:intergenic | 35.0% |
| ! | TATGGTTTTTATTGGGGTTG+GGG | + | chr8_4:20399351-20399370 | None:intergenic | 35.0% |
| !!! | TTTTTTGCATTCCTCGTTCT+TGG | + | chr8_4:20399415-20399434 | None:intergenic | 35.0% |
| AGAAGCTAGAGAAAAAGTGA+CGG | + | chr8_4:20399496-20399515 | None:intergenic | 35.0% | |
| AAAGAAGTGAAGAAGAGAAC+AGG | + | chr8_4:20399548-20399567 | None:intergenic | 35.0% | |
| !!! | GGGTGATTTTCAAGTTAAGA+AGG | - | chr8_4:20399814-20399833 | Msa1318410:intron | 35.0% |
| TATTAGCAGTGTCTATGTGT+CGG | + | chr8_4:20399998-20400017 | None:intergenic | 35.0% | |
| ! | CATTGGGTATCCCTTAATTT+TGG | - | chr8_4:20400171-20400190 | Msa1318410:intron | 35.0% |
| ! | AGACTTGGTTTCATGTTTGT+TGG | - | chr8_4:20400361-20400380 | Msa1318410:intron | 35.0% |
| ! | GACTTGGTTTCATGTTTGTT+GGG | - | chr8_4:20400362-20400381 | Msa1318410:intron | 35.0% |
| !!! | TTAGAGCAAGTTTTTTGGGT+TGG | - | chr8_4:20400444-20400463 | Msa1318410:CDS | 35.0% |
| !! | ATAGAGTAAACTTTTTGGGC+TGG | - | chr8_4:20400585-20400604 | Msa1318410:CDS | 35.0% |
| ATAAACTCAATAATGCAGCG+AGG | + | chr8_4:20400753-20400772 | None:intergenic | 35.0% | |
| !! | GGATTCTAGAAGAAGTATCT+TGG | - | chr8_4:20400803-20400822 | Msa1318410:intron | 35.0% |
| ! | TATGTGTTTCCTTGGTAATC+AGG | - | chr8_4:20400918-20400937 | Msa1318410:CDS | 35.0% |
| AAGATCACTTGTTTCCATGA+TGG | - | chr8_4:20401032-20401051 | Msa1318410:intron | 35.0% | |
| ! | ACTTGTTTCCATGATGGAAT+TGG | - | chr8_4:20401038-20401057 | Msa1318410:intron | 35.0% |
| !! | CGGGTATATGATAATGGAAT+CGG | + | chr8_4:20401089-20401108 | None:intergenic | 35.0% |
| GTAAGACGGGTATATGATAA+TGG | + | chr8_4:20401095-20401114 | None:intergenic | 35.0% | |
| AAGAAACCTTGAAGTAAGAC+GGG | + | chr8_4:20401108-20401127 | None:intergenic | 35.0% | |
| CAAGAAACCTTGAAGTAAGA+CGG | + | chr8_4:20401109-20401128 | None:intergenic | 35.0% | |
| CTTCAAGGTTTCTTGTCTTA+TGG | - | chr8_4:20401114-20401133 | Msa1318410:intron | 35.0% | |
| CAATCATCCCAAAGTATGAT+AGG | + | chr8_4:20401152-20401171 | None:intergenic | 35.0% | |
| !! | TACTTTGGGATGATTGTCAT+TGG | - | chr8_4:20401156-20401175 | Msa1318410:intron | 35.0% |
| TTCTTCAATGCAGAACAAAG+AGG | + | chr8_4:20401213-20401232 | None:intergenic | 35.0% | |
| ! | TATTTTCTGATGGTTGAGTC+CGG | + | chr8_4:20401315-20401334 | None:intergenic | 35.0% |
| CTGTAATAGTCTAAAGATCC+TGG | + | chr8_4:20401633-20401652 | None:intergenic | 35.0% | |
| ! | AGCAGTTAGATTTTTGTGAG+TGG | - | chr8_4:20401755-20401774 | Msa1318410:intron | 35.0% |
| ! | TATATTATGGACTGCACTTC+TGG | - | chr8_4:20401838-20401857 | Msa1318410:CDS | 35.0% |
| CAGAGTTCAGTTTAGATTTG+GGG | + | chr8_4:20402015-20402034 | None:intergenic | 35.0% | |
| GCAGAGTTCAGTTTAGATTT+GGG | + | chr8_4:20402016-20402035 | None:intergenic | 35.0% | |
| !! | TTAAGTGCAAGCATTGGAAA+TGG | + | chr8_4:20402158-20402177 | None:intergenic | 35.0% |
| AGATCATTAAGTGCAAGCAT+TGG | + | chr8_4:20402164-20402183 | None:intergenic | 35.0% | |
| ACTTAATGATCTCTGCCAAA+AGG | - | chr8_4:20402172-20402191 | Msa1318410:CDS | 35.0% | |
| TGCTTCTTGAATGTCTTTCT+GGG | + | chr8_4:20402198-20402217 | None:intergenic | 35.0% | |
| TTGCTTCTTGAATGTCTTTC+TGG | + | chr8_4:20402199-20402218 | None:intergenic | 35.0% | |
| !! | TCTAAAGAGCATTCACCAAA+TGG | - | chr8_4:20402272-20402291 | Msa1318410:CDS | 35.0% |
| TAGCCACATTAATTGTGGTT+AGG | - | chr8_4:20402384-20402403 | Msa1318410:CDS | 35.0% | |
| GTTCCTAACCACAATTAATG+TGG | + | chr8_4:20402390-20402409 | None:intergenic | 35.0% | |
| ACCAGATTGAGGATTTCTTT+AGG | - | chr8_4:20402450-20402469 | Msa1318410:five_prime_UTR | 35.0% | |
| TCCTAAAGAAATCCTCAATC+TGG | + | chr8_4:20402454-20402473 | None:intergenic | 35.0% | |
| AAGCACTATGGATAGATTTG+AGG | + | chr8_4:20402482-20402501 | None:intergenic | 35.0% | |
| ! | GAGGGGAGTTGGTTAAAAAT+TGG | + | chr8_4:20399119-20399138 | None:intergenic | 40.0% |
| !! | TATTGATGATGAAGGGGAGA+GGG | + | chr8_4:20399137-20399156 | None:intergenic | 40.0% |
| !! | ATATTGATGATGAAGGGGAG+AGG | + | chr8_4:20399138-20399157 | None:intergenic | 40.0% |
| TTGAGATGGTGAAAGAGAAG+AGG | + | chr8_4:20399181-20399200 | None:intergenic | 40.0% | |
| !! | TGATTTGGTTATTGGGAGGA+TGG | + | chr8_4:20399208-20399227 | None:intergenic | 40.0% |
| !! | GTTTGTAGGATTTTGAGGAG+GGG | + | chr8_4:20399301-20399320 | None:intergenic | 40.0% |
| !! | GTGTTTGTAGGATTTTGAGG+AGG | + | chr8_4:20399303-20399322 | None:intergenic | 40.0% |
| ! | GGTGTGTTTGTAGGATTTTG+AGG | + | chr8_4:20399306-20399325 | None:intergenic | 40.0% |
| !! | TTTTATGGGGGTGTGTTTGT+AGG | + | chr8_4:20399315-20399334 | None:intergenic | 40.0% |
| ! | AGGTGTGGAACATTTTATGG+GGG | + | chr8_4:20399327-20399346 | None:intergenic | 40.0% |
| ! | GAGGTGTGGAACATTTTATG+GGG | + | chr8_4:20399328-20399347 | None:intergenic | 40.0% |
| !! | GGAGGTGTGGAACATTTTAT+GGG | + | chr8_4:20399329-20399348 | None:intergenic | 40.0% |
| ! | ATGGTTTTTATTGGGGTTGG+GGG | + | chr8_4:20399350-20399369 | None:intergenic | 40.0% |
| ACTCTACAACCACACAAACT+GGG | - | chr8_4:20399442-20399461 | Msa1318410:CDS | 40.0% | |
| AAGTGAAGAAGAGAACAGGA+GGG | + | chr8_4:20399544-20399563 | None:intergenic | 40.0% | |
| GAAAAAACTCCGGCAAGTAA+TGG | + | chr8_4:20399610-20399629 | None:intergenic | 40.0% | |
| !!! | TTGCGTTGCTATTGGTTTTC+AGG | - | chr8_4:20399678-20399697 | Msa1318410:intron | 40.0% |
| !!! | GTTGCTATTGGTTTTCAGGA+CGG | - | chr8_4:20399682-20399701 | Msa1318410:intron | 40.0% |
| TTGTTGAAGGGAAGAAAGCT+TGG | - | chr8_4:20399723-20399742 | Msa1318410:intron | 40.0% | |
| GTCACGAGGCTAATTCAATT+TGG | - | chr8_4:20400092-20400111 | Msa1318410:intron | 40.0% | |
| GCTGTAAGTTGTGCATAGTT+GGG | - | chr8_4:20400114-20400133 | Msa1318410:intron | 40.0% | |
| !! | AGTTGGGTTGAAGTTGTTTG+AGG | - | chr8_4:20400130-20400149 | Msa1318410:intron | 40.0% |
| !!! | TGAAGTTTTAGGATGGCAGT+CGG | - | chr8_4:20400297-20400316 | Msa1318410:intron | 40.0% |
| TACATGCTTATGGTCAGACT+TGG | - | chr8_4:20400346-20400365 | Msa1318410:intron | 40.0% | |
| !! | TATAATGAAGGGTGTCTGCA+AGG | - | chr8_4:20400406-20400425 | Msa1318410:CDS | 40.0% |
| TATAGCAAAGCTTGTCTGCA+AGG | - | chr8_4:20400547-20400566 | Msa1318410:CDS | 40.0% | |
| ATGCAGTGTCATGTGTTGTA+TGG | - | chr8_4:20400651-20400670 | Msa1318410:intron | 40.0% | |
| GAGCATTCGGCTACTAAAAT+TGG | - | chr8_4:20400779-20400798 | Msa1318410:intron | 40.0% | |
| CATTCGGCTACTAAAATTGG+AGG | - | chr8_4:20400782-20400801 | Msa1318410:intron | 40.0% | |
| TGATTCCTGTACCGCAAATA+GGG | + | chr8_4:20401012-20401031 | None:intergenic | 40.0% | |
| TTGATTCCTGTACCGCAAAT+AGG | + | chr8_4:20401013-20401032 | None:intergenic | 40.0% | |
| CACATAAGCCAATTCCATCA+TGG | + | chr8_4:20401049-20401068 | None:intergenic | 40.0% | |
| CATATACCCGTCTTACTTCA+AGG | - | chr8_4:20401099-20401118 | Msa1318410:intron | 40.0% | |
| ! | TCTAGGATTGAAGTAAGGTG+AGG | + | chr8_4:20401243-20401262 | None:intergenic | 40.0% |
| ACGTTGTAGTTAACAGAACC+AGG | - | chr8_4:20401612-20401631 | Msa1318410:intron | 40.0% | |
| ATTCTGCAGTCTGTTCTGTT+TGG | + | chr8_4:20401956-20401975 | None:intergenic | 40.0% | |
| GGCAGAGTTCAGTTTAGATT+TGG | + | chr8_4:20402017-20402036 | None:intergenic | 40.0% | |
| ! | GTAGGTTGGAGTTCTTATAG+AGG | - | chr8_4:20402130-20402149 | Msa1318410:CDS | 40.0% |
| ! | GTGCGCATGAATCACATTTT+CGG | + | chr8_4:20402228-20402247 | None:intergenic | 40.0% |
| !! | GGTAGTTTTGCTTTGCAACA+AGG | + | chr8_4:20402250-20402269 | None:intergenic | 40.0% |
| ! | TTGGTGAATGCTCTTTAGAG+TGG | + | chr8_4:20402271-20402290 | None:intergenic | 40.0% |
| TTCTCTTCCATTTAGGAGCT+AGG | + | chr8_4:20402302-20402321 | None:intergenic | 40.0% | |
| !! | ATTGATGATGAAGGGGAGAG+GGG | + | chr8_4:20399136-20399155 | None:intergenic | 45.0% |
| TTGGGGTGAATTGGGAAGTT+AGG | + | chr8_4:20399241-20399260 | None:intergenic | 45.0% | |
| !!! | GTGGCATTTTGGGGTGAATT+GGG | + | chr8_4:20399249-20399268 | None:intergenic | 45.0% |
| !!! | TGTGGCATTTTGGGGTGAAT+TGG | + | chr8_4:20399250-20399269 | None:intergenic | 45.0% |
| !! | GGGAGGTGTGGAACATTTTA+TGG | + | chr8_4:20399330-20399349 | None:intergenic | 45.0% |
| ! | GCATTCCTCGTTCTTGGTTT+TGG | + | chr8_4:20399409-20399428 | None:intergenic | 45.0% |
| CACTCTACAACCACACAAAC+TGG | - | chr8_4:20399441-20399460 | Msa1318410:CDS | 45.0% | |
| !! | AGAAAAAGTGACGGACGTGA+CGG | + | chr8_4:20399487-20399506 | None:intergenic | 45.0% |
| TAAAGAGAGGATGACACGTG+AGG | + | chr8_4:20399519-20399538 | None:intergenic | 45.0% | |
| GAAGTGAAGAAGAGAACAGG+AGG | + | chr8_4:20399545-20399564 | None:intergenic | 45.0% | |
| CGTAGCACAGGAAAAAACTC+CGG | + | chr8_4:20399620-20399639 | None:intergenic | 45.0% | |
| ATGGCTACTGTTGATGTGAG+TGG | - | chr8_4:20399788-20399807 | Msa1318410:intron | 45.0% | |
| TGGCTACTGTTGATGTGAGT+GGG | - | chr8_4:20399789-20399808 | Msa1318410:intron | 45.0% | |
| TACTGTTGATGTGAGTGGGA+AGG | - | chr8_4:20399793-20399812 | Msa1318410:intron | 45.0% | |
| ACTGTTGATGTGAGTGGGAA+GGG | - | chr8_4:20399794-20399813 | Msa1318410:intron | 45.0% | |
| TGAAACATGGACACCAGACA+TGG | - | chr8_4:20399970-20399989 | Msa1318410:intron | 45.0% | |
| TGTTAGACATGCTAGTCACG+AGG | - | chr8_4:20400078-20400097 | Msa1318410:intron | 45.0% | |
| GGCTGTAAGTTGTGCATAGT+TGG | - | chr8_4:20400113-20400132 | Msa1318410:intron | 45.0% | |
| !!! | GAAGTTTTAGGATGGCAGTC+GGG | - | chr8_4:20400298-20400317 | Msa1318410:intron | 45.0% |
| !!! | AAGTTTTAGGATGGCAGTCG+GGG | - | chr8_4:20400299-20400318 | Msa1318410:intron | 45.0% |
| !! | GAGTAAACTTTTTGGGCTGG+TGG | - | chr8_4:20400588-20400607 | Msa1318410:CDS | 45.0% |
| ACTTCTTGGCCTGATTACCA+AGG | + | chr8_4:20400930-20400949 | None:intergenic | 45.0% | |
| ! | GTAATCAGGCCAAGAAGTGT+TGG | - | chr8_4:20400932-20400951 | Msa1318410:CDS | 45.0% |
| CATTTCCCTATTTGCGGTAC+AGG | - | chr8_4:20401004-20401023 | Msa1318410:intron | 45.0% | |
| TGGCTTATGTGAACAGCTTC+TGG | - | chr8_4:20401058-20401077 | Msa1318410:intron | 45.0% | |
| GGCTTATGTGAACAGCTTCT+GGG | - | chr8_4:20401059-20401078 | Msa1318410:intron | 45.0% | |
| TGACGCTCCCTATCATACTT+TGG | - | chr8_4:20401141-20401160 | Msa1318410:intron | 45.0% | |
| GACGCTCCCTATCATACTTT+GGG | - | chr8_4:20401142-20401161 | Msa1318410:intron | 45.0% | |
| !! | CAAAGAGGCAGCACTGATAA+AGG | + | chr8_4:20401198-20401217 | None:intergenic | 45.0% |
| AGAATCTGTTATGCTCCCTC+CGG | - | chr8_4:20401293-20401312 | Msa1318410:intron | 45.0% | |
| ! | GAATGTCTTTCTGGGCCTTT+TGG | + | chr8_4:20402190-20402209 | None:intergenic | 45.0% |
| !! | AAGAGCATTCACCAAATGGC+TGG | - | chr8_4:20402276-20402295 | Msa1318410:CDS | 45.0% |
| !! | AATATTAAGTAATTAATTTA+AGG | - | chr8_4:20401472-20401491 | Msa1318410:intron | 5.0% |
| !! | ATATTAAGTAATTAATTTAA+GGG | - | chr8_4:20401473-20401492 | Msa1318410:intron | 5.0% |
| !! | AATTGGTTGGTGTGGTGGGT+GGG | + | chr8_4:20399102-20399121 | None:intergenic | 50.0% |
| ! | AAATTGGTTGGTGTGGTGGG+TGG | + | chr8_4:20399103-20399122 | None:intergenic | 50.0% |
| GGGAGGATGGTACATTGAGA+TGG | + | chr8_4:20399195-20399214 | None:intergenic | 50.0% | |
| ! | GAGGTGTGTGTGGCATTTTG+GGG | + | chr8_4:20399258-20399277 | None:intergenic | 50.0% |
| !! | GGAGGTGTGTGTGGCATTTT+GGG | + | chr8_4:20399259-20399278 | None:intergenic | 50.0% |
| !! | AGGAGGTGTGTGTGGCATTT+TGG | + | chr8_4:20399260-20399279 | None:intergenic | 50.0% |
| !! | TGTAGGATTTTGAGGAGGGG+AGG | + | chr8_4:20399298-20399317 | None:intergenic | 50.0% |
| ! | GTTTTTATTGGGGTTGGGGG+AGG | + | chr8_4:20399347-20399366 | None:intergenic | 50.0% |
| TGTACGGAGGAGGGTGATTA+TGG | + | chr8_4:20399369-20399388 | None:intergenic | 50.0% | |
| GCAGACCAAAACCAAGAACG+AGG | - | chr8_4:20399401-20399420 | Msa1318410:CDS | 50.0% | |
| GAACAGGAGGGACTAAAGAG+AGG | + | chr8_4:20399532-20399551 | None:intergenic | 50.0% | |
| ! | CAAGTAATGGAACCAGACGG+CGG | + | chr8_4:20399597-20399616 | None:intergenic | 50.0% |
| ! | CGGCAAGTAATGGAACCAGA+CGG | + | chr8_4:20399600-20399619 | None:intergenic | 50.0% |
| ! | CGTCTGGTTCCATTACTTGC+CGG | - | chr8_4:20399598-20399617 | Msa1318410:intron | 50.0% |
| GCAGGAGCAGTAAGCTGATA+AGG | + | chr8_4:20399656-20399675 | None:intergenic | 50.0% | |
| TCCTGCTCTTGCGTTGCTAT+TGG | - | chr8_4:20399670-20399689 | Msa1318410:intron | 50.0% | |
| ACCAATAGCAACGCAAGAGC+AGG | + | chr8_4:20399674-20399693 | None:intergenic | 50.0% | |
| !!! | GCTATTGGTTTTCAGGACGG+AGG | - | chr8_4:20399685-20399704 | Msa1318410:intron | 50.0% |
| !! | GCAGCACTGATAAAGGTAGC+AGG | + | chr8_4:20401191-20401210 | None:intergenic | 50.0% |
| TTCTGATGGTTGAGTCCGGA+GGG | + | chr8_4:20401311-20401330 | None:intergenic | 50.0% | |
| TTTCTGATGGTTGAGTCCGG+AGG | + | chr8_4:20401312-20401331 | None:intergenic | 50.0% | |
| GCTACACTTGCACCAGATTG+AGG | - | chr8_4:20402439-20402458 | Msa1318410:five_prime_UTR | 50.0% | |
| ! | GTTGTTGGAGGAGGTGTGTG+TGG | + | chr8_4:20399268-20399287 | None:intergenic | 55.0% |
| !! | GGAGGGTTAGTTGTTGGAGG+AGG | + | chr8_4:20399277-20399296 | None:intergenic | 55.0% |
| !! | GGAGGAGGGTTAGTTGTTGG+AGG | + | chr8_4:20399280-20399299 | None:intergenic | 55.0% |
| !! | AGGGGAGGAGGGTTAGTTGT+TGG | + | chr8_4:20399283-20399302 | None:intergenic | 55.0% |
| !! | GGATTTTGAGGAGGGGAGGA+GGG | + | chr8_4:20399294-20399313 | None:intergenic | 55.0% |
| !! | AGGATTTTGAGGAGGGGAGG+AGG | + | chr8_4:20399295-20399314 | None:intergenic | 55.0% |
| ! | GTCTGGGATTGTACGGAGGA+GGG | + | chr8_4:20399378-20399397 | None:intergenic | 55.0% |
| ! | AGTCTGGGATTGTACGGAGG+AGG | + | chr8_4:20399379-20399398 | None:intergenic | 55.0% |
| TCCTCCGTACAATCCCAGAC+TGG | - | chr8_4:20399378-20399397 | Msa1318410:CDS | 55.0% | |
| CCTCCGTACAATCCCAGACT+GGG | - | chr8_4:20399379-20399398 | Msa1318410:CDS | 55.0% | |
| ! | CTGCCCAGTCTGGGATTGTA+CGG | + | chr8_4:20399385-20399404 | None:intergenic | 55.0% |
| !! | GGTTTTGGTCTGCCCAGTCT+GGG | + | chr8_4:20399394-20399413 | None:intergenic | 55.0% |
| !!! | TGGTTTTGGTCTGCCCAGTC+TGG | + | chr8_4:20399395-20399414 | None:intergenic | 55.0% |
| GGTGTGTGACCCAGTTTGTG+TGG | + | chr8_4:20399454-20399473 | None:intergenic | 55.0% | |
| !! | AAAGTGACGGACGTGACGGA+GGG | + | chr8_4:20399483-20399502 | None:intergenic | 55.0% |
| !! | AAAAGTGACGGACGTGACGG+AGG | + | chr8_4:20399484-20399503 | None:intergenic | 55.0% |
| GTTGTAAGCGGCGATGACAG+CGG | + | chr8_4:20399573-20399592 | None:intergenic | 55.0% | |
| AGCGAAGAAGCTCGTAGCAC+AGG | + | chr8_4:20399632-20399651 | None:intergenic | 55.0% | |
| !! | CTATGTGTCGGTGCCATGTC+TGG | + | chr8_4:20399986-20400005 | None:intergenic | 55.0% |
| GCAGTCGGGGTTGAACTAGT+CGG | - | chr8_4:20400312-20400331 | Msa1318410:intron | 55.0% | |
| CAGTCGGGGTTGAACTAGTC+GGG | - | chr8_4:20400313-20400332 | Msa1318410:intron | 55.0% | |
| AGTCGGGGTTGAACTAGTCG+GGG | - | chr8_4:20400314-20400333 | Msa1318410:intron | 55.0% | |
| ! | GGGCTGGTGGTTGTAGTTGA+TGG | - | chr8_4:20400601-20400620 | Msa1318410:intron | 55.0% |
| TAGGAGCTAGGCCAGCCATT+TGG | + | chr8_4:20402290-20402309 | None:intergenic | 55.0% | |
| !! | TGGCTGGCCTAGCTCCTAAA+TGG | - | chr8_4:20402292-20402311 | Msa1318410:CDS | 55.0% |
| GATGAAGGGGAGAGGGGAGT+TGG | + | chr8_4:20399130-20399149 | None:intergenic | 60.0% | |
| TATTGGGGTTGGGGGAGGTG+TGG | + | chr8_4:20399342-20399361 | None:intergenic | 60.0% | |
| ! | CCCAGTCTGGGATTGTACGG+AGG | + | chr8_4:20399382-20399401 | None:intergenic | 60.0% |
| CCAGACGGCGGAGTTGTAAG+CGG | + | chr8_4:20399585-20399604 | None:intergenic | 60.0% | |
| ! | GGACGTGACGGAGGGAGGAA+CGG | + | chr8_4:20399475-20399494 | None:intergenic | 65.0% |
| CCGCTTACAACTCCGCCGTC+TGG | - | chr8_4:20399582-20399601 | Msa1318410:intron | 65.0% | |
| !! | GTGACGGACGTGACGGAGGG+AGG | + | chr8_4:20399480-20399499 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 20399053 | 20402581 | 20399053 | ID=Msa1318410;Name=Msa1318410 |
| chr8_4 | mRNA | 20399053 | 20402581 | 20399053 | ID=Msa1318410-mRNA-1;Parent=Msa1318410;Name=Msa1318410-mRNA-1;_AED=0.02;_eAED=0.02;_QI=147|1|1|1|1|1|4|271|409 |
| chr8_4 | exon | 20399053 | 20399500 | 20399053 | ID=Msa1318410-mRNA-1:exon:7504;Parent=Msa1318410-mRNA-1 |
| chr8_4 | exon | 20400402 | 20400608 | 20400402 | ID=Msa1318410-mRNA-1:exon:7503;Parent=Msa1318410-mRNA-1 |
| chr8_4 | exon | 20400810 | 20400977 | 20400810 | ID=Msa1318410-mRNA-1:exon:7502;Parent=Msa1318410-mRNA-1 |
| chr8_4 | exon | 20401757 | 20402581 | 20401757 | ID=Msa1318410-mRNA-1:exon:7501;Parent=Msa1318410-mRNA-1 |
| chr8_4 | five_prime_UTR | 20402435 | 20402581 | 20402435 | ID=Msa1318410-mRNA-1:five_prime_utr;Parent=Msa1318410-mRNA-1 |
| chr8_4 | CDS | 20401757 | 20402434 | 20401757 | ID=Msa1318410-mRNA-1:cds;Parent=Msa1318410-mRNA-1 |
| chr8_4 | CDS | 20400810 | 20400977 | 20400810 | ID=Msa1318410-mRNA-1:cds;Parent=Msa1318410-mRNA-1 |
| chr8_4 | CDS | 20400402 | 20400608 | 20400402 | ID=Msa1318410-mRNA-1:cds;Parent=Msa1318410-mRNA-1 |
| chr8_4 | CDS | 20399324 | 20399500 | 20399324 | ID=Msa1318410-mRNA-1:cds;Parent=Msa1318410-mRNA-1 |
| chr8_4 | three_prime_UTR | 20399053 | 20399323 | 20399053 | ID=Msa1318410-mRNA-1:three_prime_utr;Parent=Msa1318410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
