AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1319410

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1319410 MtrunA17_Chr4g0055981 95.722 187 8 0 1 187 43 229 3.24e-133 372
Msa1319410 MtrunA17_Chr4g0070641 66.942 121 40 0 9 129 8 128 2.97e-55 173
Msa1319410 MtrunA17_Chr4g0070611 66.942 121 40 0 9 129 8 128 5.42e-55 177
Msa1319410 MtrunA17_Chr5g0435101 66.372 113 38 0 4 116 2 114 1.69e-51 165
Msa1319410 MtrunA17_Chr7g0275911 64.912 114 40 0 9 122 8 121 2.97e-51 166
Msa1319410 MtrunA17_Chr8g0346561 59.843 127 51 0 9 135 8 134 3.90e-51 166
Msa1319410 MtrunA17_Chr8g0343831 71.154 104 30 0 13 116 8 111 1.04e-50 164
Msa1319410 MtrunA17_Chr7g0240821 61.157 121 47 0 13 133 1 121 1.29e-49 160
Msa1319410 MtrunA17_Chr3g0121241 65.741 108 37 0 9 116 38 145 4.28e-49 161
Msa1319410 MtrunA17_Chr3g0131121 58.462 130 48 1 10 133 9 138 9.62e-49 160
Msa1319410 MtrunA17_Chr4g0037141 51.408 142 69 0 10 151 9 150 1.43e-48 159
Msa1319410 MtrunA17_Chr4g0044421 66.990 103 34 0 14 116 13 115 1.38e-46 151
Msa1319410 MtrunA17_Chr2g0281071 62.069 116 44 0 13 128 13 128 1.46e-46 156
Msa1319410 MtrunA17_Chr4g0048511 63.158 114 42 0 13 126 13 126 1.61e-46 156
Msa1319410 MtrunA17_Chr4g0022931 61.818 110 42 0 10 119 10 119 4.96e-46 152
Msa1319410 MtrunA17_Chr7g0274581 46.309 149 68 1 13 149 12 160 1.39e-45 149
Msa1319410 MtrunA17_Chr4g0022901 59.016 122 49 1 10 130 10 131 2.44e-45 150
Msa1319410 MtrunA17_Chr3g0115821 60.526 114 45 0 13 126 12 125 5.27e-45 152
Msa1319410 MtrunA17_Chr1g0203411 62.037 108 41 0 10 117 9 116 7.55e-45 150
Msa1319410 MtrunA17_Chr5g0434931 64.423 104 37 0 13 116 35 138 8.00e-45 150
Msa1319410 MtrunA17_Chr5g0410961 62.500 112 42 0 15 126 14 125 1.24e-44 151
Msa1319410 MtrunA17_Chr8g0360111 67.327 101 33 0 13 113 25 125 1.71e-44 148
Msa1319410 MtrunA17_Chr4g0068061 63.462 104 38 0 13 116 12 115 2.38e-44 150
Msa1319410 MtrunA17_Chr7g0217741 54.015 137 62 1 13 148 12 148 3.36e-44 149
Msa1319410 MtrunA17_Chr4g0022891 49.655 145 60 3 10 141 9 153 5.28e-44 146
Msa1319410 MtrunA17_Chr2g0323411 58.824 119 49 0 10 128 9 127 5.72e-44 149
Msa1319410 MtrunA17_Chr3g0103281 56.410 117 51 0 10 126 9 125 8.57e-44 148
Msa1319410 MtrunA17_Chr1g0187761 61.682 107 41 0 10 116 9 115 1.14e-43 146
Msa1319410 MtrunA17_Chr4g0039971 59.649 114 46 0 13 126 13 126 1.25e-43 149
Msa1319410 MtrunA17_Chr1g0167661 51.163 129 63 0 10 138 9 137 1.29e-43 146
Msa1319410 MtrunA17_Chr1g0193371 48.052 154 77 1 10 163 9 159 1.33e-43 149
Msa1319410 MtrunA17_Chr7g0228991 63.810 105 38 0 13 117 29 133 1.58e-43 146
Msa1319410 MtrunA17_Chr5g0434911 63.462 104 38 0 13 116 21 124 1.71e-43 146
Msa1319410 MtrunA17_Chr4g0022881 51.128 133 60 1 10 137 9 141 1.75e-43 145
Msa1319410 MtrunA17_Chr5g0395281 58.772 114 47 0 13 126 12 125 2.20e-43 147
Msa1319410 MtrunA17_Chr7g0220341 55.814 129 54 2 13 139 25 152 3.70e-43 145
Msa1319410 MtrunA17_Chr4g0022911 56.303 119 51 1 13 130 13 131 5.41e-43 145
Msa1319410 MtrunA17_Chr1g0211161 57.759 116 49 0 1 116 1 116 6.66e-43 143
Msa1319410 MtrunA17_Chr3g0117091 58.407 113 47 0 4 116 3 115 6.85e-43 146
Msa1319410 MtrunA17_Chr1g0194951 62.500 104 39 0 13 116 12 115 1.03e-42 147
Msa1319410 MtrunA17_Chr8g0385321 52.419 124 59 0 10 133 9 132 1.65e-42 145
Msa1319410 MtrunA17_Chr4g0042671 52.482 141 63 1 10 150 9 145 1.69e-42 147
Msa1319410 MtrunA17_Chr2g0328771 52.800 125 59 0 13 137 20 144 2.86e-42 144
Msa1319410 MtrunA17_Chr1g0167691 57.944 107 45 0 10 116 9 115 3.33e-42 142
Msa1319410 MtrunA17_Chr5g0434831 61.905 105 40 0 13 117 7 111 6.57e-42 139
Msa1319410 MtrunA17_Chr4g0058631 60.748 107 42 0 10 116 9 115 8.62e-42 144
Msa1319410 MtrunA17_Chr4g0060721 53.659 123 57 0 13 135 13 135 1.02e-41 143
Msa1319410 MtrunA17_Chr2g0309911 58.333 108 45 0 9 116 7 114 1.53e-41 142
Msa1319410 MtrunA17_Chr7g0217221 60.748 107 42 0 10 116 9 115 1.71e-41 141
Msa1319410 MtrunA17_Chr7g0254411 57.377 122 50 1 10 129 9 130 1.76e-41 142
Msa1319410 MtrunA17_Chr3g0088461 59.813 107 43 0 10 116 19 125 2.32e-41 142
Msa1319410 MtrunA17_Chr4g0032401 53.226 124 58 0 9 132 13 136 2.65e-41 142
Msa1319410 MtrunA17_Chr7g0270891 61.682 107 41 0 10 116 9 115 3.00e-41 142
Msa1319410 MtrunA17_Chr7g0261281 55.462 119 53 0 10 128 9 127 3.07e-41 140
Msa1319410 MtrunA17_Chr6g0453471 58.120 117 49 0 10 126 9 125 3.36e-41 142
Msa1319410 MtrunA17_Chr6g0453211 58.537 123 47 1 10 132 9 127 3.79e-41 141
Msa1319410 MtrunA17_Chr8g0342541 44.118 170 85 3 10 174 9 173 6.73e-41 141
Msa1319410 MtrunA17_Chr2g0323351 44.805 154 82 2 10 163 9 159 7.56e-41 139
Msa1319410 MtrunA17_Chr3g0092401 55.462 119 53 0 13 131 13 131 1.16e-40 140
Msa1319410 MtrunA17_Chr1g0193801 59.813 107 43 0 10 116 9 115 1.25e-40 141
Msa1319410 MtrunA17_Chr8g0387421 58.879 107 44 0 10 116 9 115 1.40e-40 140
Msa1319410 MtrunA17_Chr5g0397231 60.784 102 40 0 10 111 9 110 1.71e-40 140
Msa1319410 MtrunA17_Chr5g0434841 60.000 105 42 0 13 117 20 124 2.03e-40 139
Msa1319410 MtrunA17_Chr6g0470971 50.360 139 67 1 10 148 11 147 4.65e-40 137
Msa1319410 MtrunA17_Chr1g0168661 53.390 118 55 0 10 127 18 135 6.23e-40 136
Msa1319410 MtrunA17_Chr1g0194301 56.364 110 48 0 12 121 32 141 1.49e-39 136
Msa1319410 MtrunA17_Chr2g0311221 58.252 103 43 0 10 112 11 113 2.75e-39 137
Msa1319410 MtrunA17_Chr4g0057031 57.018 114 49 0 13 126 12 125 2.85e-39 135
Msa1319410 MtrunA17_Chr1g0194291 54.545 121 52 1 4 121 9 129 3.17e-39 135
Msa1319410 MtrunA17_Chr6g0452271 48.227 141 71 1 10 150 9 147 3.44e-39 137
Msa1319410 MtrunA17_Chr8g0342481 55.172 116 51 1 10 124 9 124 3.54e-39 138
Msa1319410 MtrunA17_Chr1g0209661 53.782 119 53 1 4 120 16 134 3.63e-39 136
Msa1319410 MtrunA17_Chr2g0330041 57.944 107 45 0 10 116 9 115 4.43e-39 138
Msa1319410 MtrunA17_Chr8g0342521 44.118 170 81 4 10 174 9 169 4.80e-39 136
Msa1319410 MtrunA17_Chr4g0028311 58.333 108 44 1 10 116 9 116 5.09e-39 136
Msa1319410 MtrunA17_Chr3g0110351 55.556 117 52 0 10 126 9 125 5.26e-39 135
Msa1319410 MtrunA17_Chr2g0327821 43.949 157 86 1 9 165 2 156 5.27e-39 133
Msa1319410 MtrunA17_Chr7g0271241 61.386 101 39 0 10 110 9 109 5.86e-39 137
Msa1319410 MtrunA17_Chr5g0434571 44.118 170 85 3 10 173 45 210 7.92e-39 136
Msa1319410 MtrunA17_Chr8g0349261 54.237 118 53 1 10 126 10 127 9.60e-39 134
Msa1319410 MtrunA17_Chr1g0203441 56.364 110 48 0 9 118 9 118 1.07e-38 134
Msa1319410 MtrunA17_Chr7g0228231 56.303 119 48 2 13 131 14 128 2.32e-38 131
Msa1319410 MtrunA17_Chr3g0135311 58.333 108 44 1 10 116 9 116 3.34e-38 134
Msa1319410 MtrunA17_Chr1g0186061 56.863 102 44 0 15 116 22 123 3.89e-38 132
Msa1319410 MtrunA17_Chr7g0228891 55.652 115 51 0 10 124 9 123 5.26e-38 132
Msa1319410 MtrunA17_Chr1g0180391 56.190 105 46 0 13 117 19 123 9.62e-38 130
Msa1319410 MtrunA17_Chr7g0264641 50.400 125 61 1 10 133 9 133 2.92e-37 130
Msa1319410 MtrunA17_Chr7g0269831 58.333 120 47 1 10 129 9 125 3.21e-37 132
Msa1319410 MtrunA17_Chr1g0151941 52.778 108 50 1 10 116 9 116 4.01e-37 129
Msa1319410 MtrunA17_Chr4g0030881 50.000 118 52 1 9 119 3 120 5.67e-37 129
Msa1319410 MtrunA17_Chr2g0327351 57.282 103 43 1 10 111 9 111 6.42e-37 130
Msa1319410 MtrunA17_Chr5g0400821 56.481 108 46 1 10 116 9 116 8.92e-37 130
Msa1319410 MtrunA17_Chr4g0054391 49.618 131 65 1 10 139 9 139 9.60e-37 129
Msa1319410 MtrunA17_Chr6g0450101 49.587 121 61 0 13 133 14 134 1.05e-36 127
Msa1319410 MtrunA17_Chr1g0152011 55.556 108 47 1 10 116 9 116 1.17e-36 130
Msa1319410 MtrunA17_Chr5g0417821 51.754 114 55 0 13 126 7 120 1.58e-36 129
Msa1319410 MtrunA17_Chr3g0099131 54.808 104 47 0 13 116 41 144 1.92e-36 133
Msa1319410 MtrunA17_Chr4g0068921 52.893 121 57 0 13 133 24 144 1.19e-35 124
Msa1319410 MtrunA17_Chr3g0080861 55.556 99 44 0 13 111 37 135 2.49e-35 129
Msa1319410 MtrunA17_Chr7g0247131 65.854 82 28 0 45 126 10 91 1.86e-34 122
Msa1319410 MtrunA17_Chr6g0487491 48.120 133 58 3 10 133 9 139 1.88e-34 122
Msa1319410 MtrunA17_Chr1g0154031 46.094 128 66 2 13 138 76 202 1.11e-33 124
Msa1319410 MtrunA17_Chr8g0354661 51.923 104 50 0 13 116 37 140 1.21e-33 125
Msa1319410 MtrunA17_Chr2g0293911 56.881 109 47 0 13 121 24 132 1.23e-33 122
Msa1319410 MtrunA17_Chr4g0072751 53.398 103 47 1 10 111 9 111 5.03e-33 120
Msa1319410 MtrunA17_Chr7g0229101 75.362 69 17 0 45 113 4 72 1.16e-32 116
Msa1319410 MtrunA17_Chr2g0322521 55.769 104 46 0 13 116 29 132 1.36e-32 120
Msa1319410 MtrunA17_Chr5g0434901 74.627 67 17 0 47 113 7 73 3.16e-31 110
Msa1319410 MtrunA17_Chr5g0440781 46.939 98 51 1 15 111 14 111 1.73e-30 110
Msa1319410 MtrunA17_Chr1g0192411 51.020 98 48 0 13 110 12 109 2.45e-30 114
Msa1319410 MtrunA17_Chr5g0440761 46.939 98 51 1 15 111 14 111 6.15e-30 111
Msa1319410 MtrunA17_Chr5g0395221 58.750 80 33 0 10 89 9 88 7.09e-30 105
Msa1319410 MtrunA17_Chr5g0441141 46.939 98 51 1 15 111 14 111 7.58e-30 110
Msa1319410 MtrunA17_Chr5g0441131 48.980 98 49 1 15 111 11 108 8.23e-30 108
Msa1319410 MtrunA17_Chr7g0229131 67.606 71 23 0 45 115 4 74 1.41e-29 107
Msa1319410 MtrunA17_Chr8g0334881 45.631 103 55 1 10 111 7 109 1.89e-28 108
Msa1319410 MtrunA17_Chr5g0401731 38.776 147 87 3 15 159 15 160 2.85e-28 108
Msa1319410 MtrunA17_Chr2g0323321 54.321 81 37 0 13 93 11 91 4.76e-28 102
Msa1319410 MtrunA17_Chr6g0454921 46.226 106 56 1 15 120 15 119 9.28e-28 103
Msa1319410 MtrunA17_Chr3g0117511 41.912 136 74 3 2 135 168 300 1.64e-27 107
Msa1319410 MtrunA17_Chr5g0429661 46.602 103 54 1 9 111 116 217 2.52e-27 105
Msa1319410 MtrunA17_Chr8g0342461 55.422 83 36 1 9 90 8 90 3.10e-27 100
Msa1319410 MtrunA17_Chr4g0013361 40.000 120 71 1 13 131 10 129 5.79e-27 103
Msa1319410 MtrunA17_Chr4g0008551 46.602 103 54 1 15 117 38 139 8.36e-27 104
Msa1319410 MtrunA17_Chr8g0342531 43.519 108 56 1 10 112 9 116 9.00e-27 100
Msa1319410 MtrunA17_Chr8g0342471 55.422 83 36 1 9 90 8 90 1.15e-26 99.4
Msa1319410 MtrunA17_Chr3g0133601 45.631 103 55 1 15 117 37 138 2.61e-26 100
Msa1319410 MtrunA17_Chr6g0480581 44.118 102 56 1 14 115 3 103 2.74e-26 100
Msa1319410 MtrunA17_Chr6g0460661 47.423 97 50 1 14 110 15 110 2.77e-26 99.0
Msa1319410 MtrunA17_Chr7g0238631 37.342 158 89 2 15 172 113 260 3.86e-26 104
Msa1319410 MtrunA17_Chr4g0053431 44.340 106 58 1 15 120 5 109 4.05e-26 101
Msa1319410 MtrunA17_Chr4g0042501 44.118 102 56 1 15 116 105 205 7.22e-26 102
Msa1319410 MtrunA17_Chr4g0058991 45.872 109 57 2 4 111 197 304 8.62e-26 103
Msa1319410 MtrunA17_Chr4g0042611 56.250 80 35 0 10 89 9 88 1.29e-25 94.7
Msa1319410 MtrunA17_Chr8g0342511 53.165 79 37 0 10 88 9 87 1.53e-25 95.1
Msa1319410 MtrunA17_Chr2g0294811 50.000 84 42 0 10 93 9 92 1.72e-25 95.5
Msa1319410 MtrunA17_Chr3g0099141 50.602 83 41 0 13 95 40 122 3.49e-25 95.5
Msa1319410 MtrunA17_Chr5g0417621 42.157 102 58 1 15 116 134 234 1.08e-24 99.8
Msa1319410 MtrunA17_Chr5g0437321 43.434 99 55 1 15 113 19 116 1.89e-24 97.1
Msa1319410 MtrunA17_Chr3g0139671 45.098 102 55 1 15 116 85 185 4.05e-24 99.0
Msa1319410 MtrunA17_Chr1g0157731 45.098 102 55 1 15 116 91 191 1.61e-23 97.4
Msa1319410 MtrunA17_Chr3g0125801 38.400 125 76 1 15 139 16 139 2.61e-23 94.4
Msa1319410 MtrunA17_Chr5g0425591 45.679 81 43 1 15 94 11 91 2.64e-22 86.7
Msa1319410 MtrunA17_Chr6g0460671 38.889 144 80 4 5 144 90 229 2.71e-22 92.4
Msa1319410 MtrunA17_Chr7g0228531 45.361 97 51 2 15 111 220 314 3.54e-22 92.8
Msa1319410 MtrunA17_Chr5g0397841 45.745 94 50 1 17 110 112 204 7.73e-22 92.0
Msa1319410 MtrunA17_Chr3g0093811 50.000 82 41 0 45 126 14 95 7.88e-22 89.7
Msa1319410 MtrunA17_Chr7g0254261 32.927 164 103 3 14 173 88 248 4.14e-21 89.4
Msa1319410 MtrunA17_Chr7g0228401 44.444 99 52 2 26 124 290 385 7.12e-21 89.4
Msa1319410 MtrunA17_Chr6g0453751 43.299 97 46 2 7 94 14 110 1.93e-20 82.8
Msa1319410 MtrunA17_Chr7g0238651 40.816 98 56 1 14 109 6 103 4.39e-20 86.3
Msa1319410 MtrunA17_Chr1g0177901 47.674 86 44 1 26 111 5 89 7.08e-20 83.6
Msa1319410 MtrunA17_Chr5g0416341 42.857 105 58 2 17 121 28 130 3.32e-19 84.7
Msa1319410 MtrunA17_Chr7g0228481 40.385 104 59 3 15 117 220 321 4.32e-18 81.3
Msa1319410 MtrunA17_Chr5g0434871 72.093 43 12 0 75 117 2 44 2.51e-17 72.8
Msa1319410 MtrunA17_Chr7g0233061 40.206 97 55 2 15 111 180 273 4.16e-17 78.2
Msa1319410 MtrunA17_Chr8g0362231 38.835 103 62 1 9 111 16 117 5.65e-17 78.2
Msa1319410 MtrunA17_Chr2g0322831 73.171 41 11 0 71 111 34 74 1.61e-15 68.6
Msa1319410 MtrunA17_Chr5g0434891 53.968 63 28 1 78 139 1 63 7.69e-15 68.6
Msa1319410 MtrunA17_Chr1g0193901 43.548 62 34 1 9 69 7 68 1.71e-13 63.9
Msa1319410 MtrunA17_Chr1g0193891 43.548 62 34 1 9 69 7 68 1.71e-13 63.9
Msa1319410 MtrunA17_Chr1g0193871 43.548 62 34 1 9 69 7 68 1.71e-13 63.9
Msa1319410 MtrunA17_Chr1g0193881 43.548 62 34 1 9 69 7 68 1.71e-13 63.9
Msa1319410 MtrunA17_Chr4g0024181 63.415 41 15 0 71 111 28 68 1.47e-12 60.5
Msa1319410 MtrunA17_Chr3g0104491 36.957 92 51 3 54 138 1 92 4.81e-12 63.2
Msa1319410 MtrunA17_Chr2g0288361 45.833 48 26 0 71 118 29 76 2.32e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1319410 AT5G35550.1 62.308 130 49 0 10 139 11 140 3.07e-51 166
Msa1319410 AT5G14750.1 47.929 169 71 2 15 166 18 186 1.35e-49 160
Msa1319410 AT3G13540.1 62.712 118 44 0 9 126 19 136 2.56e-49 160
Msa1319410 AT1G22640.1 66.355 107 36 0 10 116 9 115 5.75e-49 160
Msa1319410 AT5G40330.1 53.103 145 54 2 15 145 14 158 9.80e-49 158
Msa1319410 AT1G35515.1 44.330 194 85 3 10 187 9 195 1.30e-48 157
Msa1319410 AT4G09460.1 60.684 117 46 0 10 126 9 125 1.84e-48 158
Msa1319410 AT4G38620.1 64.486 107 38 0 10 116 9 115 3.09e-48 159
Msa1319410 AT5G52600.1 57.692 130 55 0 10 139 9 138 3.35e-48 156
Msa1319410 AT2G16720.1 64.486 107 38 0 10 116 9 115 5.96e-48 158
Msa1319410 AT2G47460.1 57.364 129 55 0 10 138 9 137 1.81e-47 159
Msa1319410 AT5G16770.4 64.035 114 41 0 13 126 12 125 2.54e-47 158
Msa1319410 AT5G16770.3 64.035 114 41 0 13 126 12 125 2.54e-47 158
Msa1319410 AT4G34990.1 57.895 133 43 3 10 132 9 138 3.09e-47 156
Msa1319410 AT4G05100.1 60.504 119 47 0 10 128 10 128 3.18e-47 157
Msa1319410 AT5G16770.1 64.035 114 41 0 13 126 12 125 4.38e-47 157
Msa1319410 AT5G16770.2 64.035 114 41 0 13 126 12 125 4.38e-47 157
Msa1319410 AT4G21440.1 60.504 119 47 0 10 128 9 127 6.09e-47 157
Msa1319410 AT4G28110.1 62.617 107 40 0 10 116 9 115 1.39e-46 154
Msa1319410 AT5G54230.1 62.281 114 43 0 13 126 12 125 2.16e-46 155
Msa1319410 AT1G66370.1 63.636 110 40 0 7 116 2 111 3.86e-46 152
Msa1319410 AT3G02940.2 62.281 114 43 0 13 126 12 125 6.56e-46 154
Msa1319410 AT3G27920.1 63.725 102 37 0 15 116 16 117 7.85e-46 151
Msa1319410 AT3G02940.1 62.281 114 43 0 13 126 12 125 1.09e-45 153
Msa1319410 AT3G02940.3 62.281 114 43 0 13 126 12 125 1.09e-45 153
Msa1319410 AT3G62610.1 58.197 122 51 0 10 131 9 130 3.11e-45 153
Msa1319410 AT5G56110.1 58.120 117 49 0 10 126 9 125 1.13e-44 150
Msa1319410 AT3G23250.1 58.824 119 48 1 10 127 9 127 2.06e-44 149
Msa1319410 AT5G12870.1 60.909 110 43 0 13 122 18 127 4.63e-44 148
Msa1319410 AT5G60890.1 56.349 126 50 1 10 130 9 134 7.36e-44 148
Msa1319410 AT4G12350.1 46.429 168 77 1 10 164 9 176 8.03e-44 147
Msa1319410 AT5G10280.1 57.018 114 49 0 13 126 12 125 8.91e-44 149
Msa1319410 AT5G49330.1 63.462 104 38 0 13 116 12 115 1.39e-43 149
Msa1319410 AT1G57560.1 43.147 197 91 4 10 197 9 193 1.45e-43 148
Msa1319410 AT5G65230.1 57.895 114 48 0 13 126 12 125 4.19e-43 146
Msa1319410 AT4G17785.2 58.772 114 47 0 13 126 13 126 5.43e-43 147
Msa1319410 AT4G17785.1 58.772 114 47 0 13 126 13 126 5.75e-43 147
Msa1319410 AT1G06180.1 57.658 111 47 0 13 123 12 122 9.83e-43 144
Msa1319410 AT1G74080.1 61.905 105 40 0 11 115 10 114 1.97e-42 145
Msa1319410 AT5G15310.1 62.500 104 39 0 13 116 12 115 2.10e-42 145
Msa1319410 AT2G47190.1 52.713 129 58 1 8 133 12 140 2.24e-42 144
Msa1319410 AT5G15310.2 62.500 104 39 0 13 116 12 115 2.42e-42 144
Msa1319410 AT5G15310.4 62.500 104 39 0 13 116 12 115 2.54e-42 142
Msa1319410 AT3G01140.2 53.333 135 62 1 10 143 9 143 5.14e-42 144
Msa1319410 AT2G31180.1 45.665 173 74 3 10 162 9 181 5.85e-42 142
Msa1319410 AT5G61420.2 49.333 150 70 2 4 148 3 151 6.21e-42 145
Msa1319410 AT3G30210.1 45.570 158 69 1 15 155 29 186 9.35e-42 142
Msa1319410 AT3G01140.1 53.333 135 62 1 10 143 52 186 1.10e-41 145
Msa1319410 AT1G16490.1 57.798 109 46 0 10 118 11 119 1.20e-41 142
Msa1319410 AT1G57560.2 60.748 107 42 0 10 116 9 115 1.40e-41 142
Msa1319410 AT1G09540.1 61.682 107 41 0 10 116 9 115 1.47e-41 144
Msa1319410 AT5G26660.1 62.617 107 40 0 10 116 9 115 3.31e-41 142
Msa1319410 AT1G63910.1 53.846 130 57 1 10 136 9 138 3.96e-41 143
Msa1319410 AT5G07700.1 56.897 116 49 1 1 116 1 115 4.40e-41 142
Msa1319410 AT5G07700.2 56.897 116 49 1 1 116 1 115 4.40e-41 142
Msa1319410 AT4G01680.3 60.748 107 42 0 10 116 9 115 4.50e-41 139
Msa1319410 AT3G53200.1 58.879 107 44 0 10 116 6 112 5.62e-41 139
Msa1319410 AT3G12720.1 56.075 107 47 0 10 116 19 125 6.04e-41 141
Msa1319410 AT5G07690.1 58.929 112 46 0 4 115 3 114 7.18e-41 141
Msa1319410 AT3G08500.1 59.813 107 43 0 10 116 27 133 7.67e-41 141
Msa1319410 AT1G79180.1 50.388 129 61 1 10 135 11 139 8.00e-41 140
Msa1319410 AT1G18570.1 61.538 104 40 0 13 116 13 116 8.43e-41 141
Msa1319410 AT1G34670.1 57.895 114 48 0 13 126 12 125 1.06e-40 142
Msa1319410 AT1G66380.1 65.741 108 37 0 9 116 4 111 1.80e-40 134
Msa1319410 AT3G61250.1 55.263 114 51 0 13 126 12 125 1.87e-40 139
Msa1319410 AT1G56160.1 57.798 109 46 0 10 118 11 119 2.15e-40 139
Msa1319410 AT4G01680.1 60.748 107 42 0 10 116 9 115 2.20e-40 140
Msa1319410 AT3G13890.2 57.944 107 45 0 10 116 9 115 2.43e-40 140
Msa1319410 AT5G62470.2 57.522 113 48 0 13 125 12 124 2.63e-40 140
Msa1319410 AT1G56650.1 67.308 104 34 0 13 116 8 111 4.62e-40 137
Msa1319410 AT1G74650.1 61.538 104 40 0 13 116 12 115 5.36e-40 139
Msa1319410 AT1G66230.1 52.344 128 61 0 10 137 9 136 6.13e-40 137
Msa1319410 AT3G28910.1 56.637 113 49 0 10 122 9 121 6.67e-40 139
Msa1319410 AT1G48000.1 52.893 121 57 0 13 133 32 152 8.34e-40 136
Msa1319410 AT3G47600.1 59.615 104 42 0 13 116 12 115 1.17e-39 138
Msa1319410 AT4G13480.1 52.033 123 54 1 9 131 2 119 1.52e-39 136
Msa1319410 AT1G08810.1 60.577 104 41 0 13 116 12 115 1.92e-39 136
Msa1319410 AT3G01530.1 61.765 102 39 0 12 113 24 125 4.11e-39 133
Msa1319410 AT5G59780.3 51.667 120 57 1 9 128 4 122 4.41e-39 134
Msa1319410 AT1G74430.1 51.639 122 54 1 13 129 12 133 5.02e-39 135
Msa1319410 AT5G14750.3 50.370 135 50 2 49 166 18 152 6.00e-39 132
Msa1319410 AT1G66390.1 64.815 108 38 0 9 116 4 111 6.34e-39 134
Msa1319410 AT4G25560.1 58.621 116 45 1 1 116 1 113 9.65e-39 134
Msa1319410 AT3G24310.1 56.881 109 47 0 9 117 14 122 9.91e-39 134
Msa1319410 AT5G62470.1 57.522 113 47 1 13 125 12 123 1.03e-38 136
Msa1319410 AT4G22680.1 55.556 117 52 0 10 126 9 125 1.30e-38 134
Msa1319410 AT5G14340.1 50.758 132 65 0 4 135 15 146 1.51e-38 134
Msa1319410 AT3G12820.1 56.075 107 47 0 10 116 11 117 1.82e-38 132
Msa1319410 AT5G35550.2 65.657 99 34 0 40 138 44 142 4.20e-38 132
Msa1319410 AT1G18710.1 53.509 114 53 0 13 126 12 125 5.48e-38 132
Msa1319410 AT3G46130.1 53.913 115 51 1 15 129 11 123 7.59e-38 131
Msa1319410 AT3G28470.1 53.922 102 47 0 10 111 9 110 8.73e-38 133
Msa1319410 AT2G26960.1 55.769 104 46 0 10 113 17 120 1.01e-37 135
Msa1319410 AT5G16600.1 55.556 117 52 0 10 126 9 125 1.69e-37 132
Msa1319410 AT3G27810.1 40.719 167 88 2 15 181 22 177 2.40e-37 129
Msa1319410 AT3G13890.1 53.448 116 45 1 10 116 9 124 2.83e-37 132
Msa1319410 AT4G01680.2 54.622 119 42 1 10 116 9 127 6.57e-37 131
Msa1319410 AT5G40350.1 53.913 115 50 1 15 129 19 130 2.12e-36 126
Msa1319410 AT5G55020.1 56.436 101 44 0 13 113 26 126 2.57e-36 132
Msa1319410 AT1G68320.1 55.455 110 49 0 11 120 17 126 3.82e-36 128
Msa1319410 AT3G49690.1 56.481 108 46 1 10 116 9 116 3.97e-36 128
Msa1319410 AT5G23000.1 56.481 108 46 1 10 116 9 116 4.52e-36 129
Msa1319410 AT2G32460.1 53.846 104 48 0 13 116 18 121 5.80e-36 131
Msa1319410 AT2G32460.2 53.846 104 48 0 13 116 6 109 6.38e-36 131
Msa1319410 AT5G06100.1 40.000 175 95 4 13 181 32 202 7.67e-36 130
Msa1319410 AT5G62320.1 38.542 192 103 5 1 177 1 192 8.79e-36 125
Msa1319410 AT4G37780.1 53.704 108 49 1 10 116 9 116 1.10e-35 127
Msa1319410 AT4G26930.1 53.922 102 47 0 12 113 18 119 1.78e-35 128
Msa1319410 AT5G65790.1 55.556 108 47 1 10 116 9 116 2.33e-35 128
Msa1319410 AT5G06100.5 39.773 176 96 4 12 181 31 202 2.41e-35 130
Msa1319410 AT5G06100.2 39.773 176 96 4 12 181 31 202 2.41e-35 130
Msa1319410 AT5G06100.3 39.773 176 96 4 12 181 31 202 2.41e-35 130
Msa1319410 AT5G06100.4 39.773 176 96 4 12 181 31 202 2.41e-35 130
Msa1319410 AT1G25340.1 54.717 106 48 0 15 120 20 125 3.14e-35 125
Msa1319410 AT5G57620.1 55.556 108 47 1 10 116 9 116 3.58e-35 126
Msa1319410 AT5G52260.1 58.879 107 44 0 10 116 9 115 5.02e-35 124
Msa1319410 AT1G79180.2 40.123 162 61 2 10 135 11 172 1.27e-34 125
Msa1319410 AT3G48920.1 44.615 130 71 1 9 138 14 142 1.90e-34 123
Msa1319410 AT2G36890.1 53.704 108 49 1 10 116 9 116 2.27e-34 124
Msa1319410 AT3G11440.2 49.533 107 54 0 10 116 38 144 2.67e-34 126
Msa1319410 AT2G36890.2 53.704 108 49 1 10 116 50 157 3.54e-34 124
Msa1319410 AT3G11440.3 49.533 107 54 0 10 116 38 144 5.65e-34 127
Msa1319410 AT3G11440.4 49.533 107 54 0 10 116 38 144 5.65e-34 127
Msa1319410 AT3G11440.1 49.533 107 54 0 10 116 38 144 5.65e-34 127
Msa1319410 AT3G06490.1 55.963 109 48 0 13 121 19 127 5.61e-33 120
Msa1319410 AT5G26660.2 76.056 71 17 0 46 116 14 84 1.55e-32 119
Msa1319410 AT5G49620.1 57.009 107 46 0 15 121 28 134 5.70e-32 117
Msa1319410 AT1G25340.2 51.887 106 46 1 15 120 20 120 1.05e-30 113
Msa1319410 AT1G25340.3 51.887 106 46 1 15 120 20 120 1.77e-30 114
Msa1319410 AT3G46130.3 63.291 79 29 0 39 117 3 81 2.78e-30 111
Msa1319410 AT3G12820.2 70.588 68 20 0 49 116 2 69 6.97e-30 109
Msa1319410 AT5G14750.4 46.400 125 50 2 59 166 1 125 1.15e-29 107
Msa1319410 AT5G14750.2 46.400 125 50 2 59 166 1 125 1.15e-29 107
Msa1319410 AT1G66380.3 78.873 71 15 0 46 116 8 78 1.41e-29 105
Msa1319410 AT3G53200.2 69.014 71 22 0 46 116 9 79 2.37e-29 108
Msa1319410 AT3G27810.2 41.176 136 69 2 46 181 4 128 2.50e-29 107
Msa1319410 AT3G47600.2 59.756 82 33 0 46 127 39 120 2.79e-29 110
Msa1319410 AT5G59780.2 60.241 83 32 1 46 128 20 101 2.98e-29 108
Msa1319410 AT3G46130.4 61.905 84 30 1 46 129 20 101 4.17e-29 108
Msa1319410 AT2G26950.1 45.098 102 56 0 10 111 13 114 7.92e-29 110
Msa1319410 AT3G60460.1 45.872 109 58 1 4 111 2 110 1.81e-28 108
Msa1319410 AT3G27785.1 49.524 105 51 2 8 111 181 284 2.67e-28 110
Msa1319410 AT5G49620.2 50.413 121 46 1 15 121 28 148 3.04e-28 108
Msa1319410 AT5G40350.2 60.000 85 31 1 44 128 3 84 3.42e-28 104
Msa1319410 AT4G18770.1 41.860 129 72 2 10 138 212 337 9.91e-28 108
Msa1319410 AT5G40360.1 45.098 102 55 1 10 111 153 253 6.61e-27 105
Msa1319410 AT1G69560.1 41.667 108 62 1 9 116 101 207 6.92e-27 104
Msa1319410 AT2G39880.1 42.975 121 68 1 15 135 50 169 7.20e-27 105
Msa1319410 AT1G69560.2 41.667 108 62 1 9 116 117 223 8.51e-27 104
Msa1319410 AT1G17950.1 33.708 178 100 6 14 189 4 165 1.14e-26 102
Msa1319410 AT4G37260.1 46.903 113 57 2 8 118 4 115 1.30e-26 103
Msa1319410 AT1G22640.3 74.138 58 15 0 59 116 1 58 1.42e-26 100
Msa1319410 AT5G11510.3 39.583 144 72 2 15 144 81 223 4.48e-26 105
Msa1319410 AT5G11510.1 39.583 144 72 2 15 144 81 223 4.48e-26 105
Msa1319410 AT5G11510.4 39.583 144 72 2 15 144 81 223 4.48e-26 105
Msa1319410 AT1G26780.1 42.857 105 59 1 12 116 95 198 4.53e-26 101
Msa1319410 AT5G11510.2 39.583 144 72 2 15 144 81 223 5.20e-26 104
Msa1319410 AT5G11510.5 39.583 144 72 2 15 144 81 223 5.31e-26 104
Msa1319410 AT1G26780.2 42.857 105 59 1 12 116 95 198 7.14e-26 102
Msa1319410 AT5G02320.1 48.039 102 52 1 15 116 127 227 7.65e-26 103
Msa1319410 AT5G02320.2 48.039 102 52 1 15 116 127 227 7.65e-26 103
Msa1319410 AT5G02320.3 48.039 102 52 1 15 116 67 167 7.72e-26 103
Msa1319410 AT2G23290.1 46.491 114 58 2 7 118 3 115 1.09e-25 101
Msa1319410 AT3G09230.1 47.059 102 53 1 15 116 55 155 1.66e-25 102
Msa1319410 AT3G09370.1 36.943 157 94 3 15 168 130 284 2.23e-25 102
Msa1319410 AT3G09370.2 36.943 157 94 3 15 168 135 289 2.26e-25 102
Msa1319410 AT3G09370.3 36.943 157 94 3 15 168 143 297 2.47e-25 102
Msa1319410 AT5G58850.1 42.857 112 63 1 15 126 105 215 5.73e-25 100
Msa1319410 AT4G33450.1 39.024 123 74 1 10 132 14 135 5.80e-25 98.2
Msa1319410 AT3G55730.1 46.729 107 54 2 15 120 56 160 6.22e-25 100
Msa1319410 AT3G50060.1 35.976 164 92 4 15 178 6 156 1.08e-24 98.6
Msa1319410 AT3G23250.2 62.857 70 25 1 59 127 1 70 1.23e-24 96.7
Msa1319410 AT5G67300.1 46.078 102 54 1 15 116 6 106 1.66e-24 97.8
Msa1319410 AT5G11050.1 45.361 97 52 1 15 111 105 200 5.62e-24 98.2
Msa1319410 AT3G29020.2 41.748 103 59 1 14 116 66 167 6.13e-24 96.7
Msa1319410 AT3G29020.1 41.748 103 59 1 14 116 64 165 6.66e-24 94.7
Msa1319410 AT1G66380.2 58.824 85 35 0 9 93 4 88 7.45e-24 91.3
Msa1319410 AT1G71030.2 63.077 65 24 0 52 116 5 69 7.94e-24 93.2
Msa1319410 AT1G71030.1 53.750 80 36 1 37 116 5 83 7.95e-24 93.6
Msa1319410 AT2G25230.1 45.098 102 55 1 10 111 21 121 9.13e-24 94.7
Msa1319410 AT5G17800.1 39.286 112 67 1 5 116 83 193 5.36e-23 94.4
Msa1319410 AT4G32730.5 43.137 102 57 1 15 116 87 187 8.37e-23 95.9
Msa1319410 AT4G32730.4 43.137 102 57 1 15 116 87 187 8.37e-23 95.9
Msa1319410 AT4G32730.3 43.137 102 57 1 15 116 87 187 8.37e-23 95.9
Msa1319410 AT4G32730.2 43.137 102 57 1 15 116 87 187 8.37e-23 95.9
Msa1319410 AT4G32730.1 43.137 102 57 1 15 116 87 187 8.91e-23 95.5
Msa1319410 AT1G73410.2 32.402 179 109 5 14 189 5 174 1.35e-22 90.9
Msa1319410 AT1G73410.1 32.402 179 109 4 14 189 5 174 1.59e-22 91.7
Msa1319410 AT5G40430.1 40.196 102 59 2 10 111 49 148 2.03e-20 86.3
Msa1319410 AT1G14350.2 33.962 159 100 4 17 173 27 182 3.98e-20 87.4
Msa1319410 AT1G14350.1 33.962 159 100 4 17 173 27 182 3.98e-20 87.4
Msa1319410 AT5G39700.1 42.708 96 54 1 16 111 57 151 3.98e-20 84.0
Msa1319410 AT1G18960.1 37.931 116 64 3 14 124 9 121 4.50e-20 86.3
Msa1319410 AT2G37630.1 40.541 111 62 2 15 123 4 112 1.58e-19 85.5
Msa1319410 AT2G02820.3 37.864 103 63 1 17 119 32 133 1.02e-17 80.1
Msa1319410 AT2G02820.2 33.333 147 81 3 17 158 32 166 1.19e-17 80.5
Msa1319410 AT2G02820.1 40.000 100 58 2 17 116 32 129 1.25e-17 80.5
Msa1319410 AT4G00540.2 35.345 116 68 3 12 124 100 211 2.77e-16 76.3
Msa1319410 AT4G00540.2 34.746 118 68 5 4 113 36 152 7.29e-12 63.5
Msa1319410 AT4G00540.1 35.345 116 68 3 12 124 98 209 2.91e-16 76.6
Msa1319410 AT4G00540.1 34.746 118 68 5 4 113 34 150 8.50e-12 63.5
Msa1319410 AT4G25560.2 69.565 46 14 0 71 116 2 47 1.35e-14 69.7
Msa1319410 AT4G01060.1 65.000 40 14 0 70 109 34 73 7.83e-14 64.3
Msa1319410 AT4G01060.2 65.000 40 14 0 70 109 31 70 8.51e-14 64.3
Msa1319410 AT5G59780.1 53.448 58 26 1 71 128 1 57 9.51e-14 66.6
Msa1319410 AT4G01060.3 65.000 40 14 0 70 109 32 71 1.08e-13 63.9
Msa1319410 AT3G46130.2 61.702 47 18 0 71 117 1 47 1.50e-13 66.6
Msa1319410 AT2G46410.1 65.000 40 14 0 70 109 37 76 3.10e-13 63.2
Msa1319410 AT2G30424.1 50.000 50 25 0 70 119 35 84 4.50e-12 60.5
Msa1319410 AT5G53200.1 57.500 40 17 0 70 109 32 71 6.88e-12 60.1
Msa1319410 AT1G01380.1 61.538 39 15 0 71 109 34 72 7.55e-12 59.3
Msa1319410 AT1G74650.3 69.231 39 12 0 78 116 1 39 9.19e-12 62.8
Msa1319410 AT3G28910.2 57.778 45 19 0 78 122 1 45 1.11e-11 62.4
Msa1319410 AT1G14350.3 34.454 119 74 3 57 173 23 139 1.21e-11 63.2
Msa1319410 AT1G14350.4 34.454 119 74 3 57 173 23 139 1.21e-11 63.2
Msa1319410 AT2G30420.1 42.188 64 33 1 70 129 39 102 3.47e-11 58.5

Find 55 sgRNAs with CRISPR-Local

Find 154 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCTTGTGTAGTGGAAGTTTC+TGG 0.164235 8_4:+22364434 None:intergenic
ATTTCTTGGCACCATGAATT+TGG 0.171949 8_4:+22365022 None:intergenic
GGATTGTGATATCGGAAAAT+TGG 0.250566 8_4:-22364037 None:intergenic
ATTAGGCTTCACAAACTTCT+TGG 0.284141 8_4:-22364752 Msa1319410:CDS
AAGAAGAGGATTTGATTATT+AGG 0.284473 8_4:-22364769 Msa1319410:CDS
CAGCTTCAACAAAATCATAT+TGG 0.285498 8_4:-22364058 Msa1319410:three_prime_UTR
ATCATATTGGATTGTGATAT+CGG 0.291605 8_4:-22364045 Msa1319410:three_prime_UTR
GTTATGGCACCCAGAAAATA+TGG 0.298421 8_4:-22365114 Msa1319410:CDS
CTGATAGCTGGAAGACTTCC+AGG 0.298793 8_4:-22364530 Msa1319410:CDS
CTATTCATTGTTTCCTTAGT+AGG 0.316905 8_4:+22365090 None:intergenic
ATGTTCCCTCTCTTGATATT+GGG 0.331261 8_4:+22364800 None:intergenic
AATGTTCCCTCTCTTGATAT+TGG 0.336344 8_4:+22364799 None:intergenic
TCTAATTCTAAATGCATGTT+CGG 0.340474 8_4:-22364138 Msa1319410:three_prime_UTR
TTCACAAACTTCTTGGAAAC+AGG 0.350411 8_4:-22364745 Msa1319410:intron
CCTCAGATGTTTCTGTTCTC+AGG 0.365977 8_4:+22364230 None:intergenic
AAGAACCATATGGGTTTGAT+TGG 0.366727 8_4:-22364289 Msa1319410:CDS
TGATTGGGTCAATAAATTCT+TGG 0.369426 8_4:-22364273 Msa1319410:CDS
AAAACCGTTGCAAACAATTC+AGG 0.371468 8_4:-22364997 Msa1319410:intron
CTAATTCTAAATGCATGTTC+GGG 0.373067 8_4:-22364137 Msa1319410:three_prime_UTR
ACAATGAAATTAAGAACTAT+TGG 0.382380 8_4:-22364499 Msa1319410:CDS
CACAAATAGCCTCATTGTTA+TGG 0.383767 8_4:-22365130 None:intergenic
AAATTCATGGTGCCAAGAAA+TGG 0.392964 8_4:-22365020 Msa1319410:CDS
GCACAATGCATCCAAATTCA+TGG 0.421820 8_4:-22365033 Msa1319410:CDS
ATAGGTGTGGAAAGAGTTGC+AGG 0.428963 8_4:-22364847 Msa1319410:CDS
TTGCCCAAGACAATGTTGTT+GGG 0.441485 8_4:-22364406 Msa1319410:CDS
GAGAATAAAGATTCAATTGG+TGG 0.441550 8_4:-22364368 Msa1319410:CDS
TTAGAGAATAAAGATTCAAT+TGG 0.442024 8_4:-22364371 Msa1319410:CDS
TTGACCCAATCAAACCCATA+TGG 0.448386 8_4:+22364284 None:intergenic
ATCCCCAACAACATTGTCTT+GGG 0.453130 8_4:+22364403 None:intergenic
CAGAAAATATGGACCTACTA+AGG 0.466289 8_4:-22365103 Msa1319410:CDS
TATCCCCAACAACATTGTCT+TGG 0.480158 8_4:+22364402 None:intergenic
TACATGACATTATACTTCAC+TGG 0.480616 8_4:+22364178 None:intergenic
ATTGCCCAAGACAATGTTGT+TGG 0.485503 8_4:-22364407 Msa1319410:CDS
TGAAGGTGGTCTCTGATAGC+TGG 0.495168 8_4:-22364542 Msa1319410:intron
GGCAATAGTTTCTTGTGTAG+TGG 0.500047 8_4:+22364424 None:intergenic
ACTAAGGAAACAATGAATAG+AGG 0.506733 8_4:-22365087 Msa1319410:CDS
AGAACCATATGGGTTTGATT+GGG 0.507623 8_4:-22364288 Msa1319410:CDS
ATAAATTCTTGGAAATTGAT+CGG 0.509384 8_4:-22364262 Msa1319410:CDS
TTTCCACTGAAGAACCATAT+GGG 0.520720 8_4:-22364298 Msa1319410:CDS
GAAAGAGTTGCAGGCTAAGA+TGG 0.524821 8_4:-22364838 Msa1319410:CDS
GAACATTTCAGATGAAGAAG+AGG 0.534571 8_4:-22364783 Msa1319410:CDS
ATTTCATTGTCTGTTCGCCC+TGG 0.551314 8_4:+22364512 None:intergenic
TGCCCAAGACAATGTTGTTG+GGG 0.564234 8_4:-22364405 Msa1319410:CDS
ATTACCTGAATTGTTTGCAA+CGG 0.581651 8_4:+22364993 None:intergenic
TTTGCAGGTTTGAATAGGTG+TGG 0.587834 8_4:-22364860 Msa1319410:intron
CTTAGACCCAATATCAAGAG+AGG 0.591885 8_4:-22364806 Msa1319410:CDS
AAACCCATATGGTTCTTCAG+TGG 0.603396 8_4:+22364295 None:intergenic
TTCTGGGTGCCATAACAATG+AGG 0.613415 8_4:+22365121 None:intergenic
AAACAATGAATAGAGGAGCA+TGG 0.625013 8_4:-22365080 Msa1319410:CDS
CCTGAGAACAGAAACATCTG+AGG 0.636993 8_4:-22364230 Msa1319410:exon
GAATAGAGGAGCATGGACCC+AGG 0.637505 8_4:-22365073 Msa1319410:CDS
TGATAGCTGGAAGACTTCCA+GGG 0.652485 8_4:-22364529 Msa1319410:CDS
TTAGACCCAATATCAAGAGA+GGG 0.658332 8_4:-22364805 Msa1319410:CDS
CTGAGAACAGAAACATCTGA+GGG 0.665777 8_4:-22364229 Msa1319410:exon
TAGAGGAGCATGGACCCAGG+AGG 0.710601 8_4:-22365070 Msa1319410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGTAATAAAAGAATAACTT+TGG + chr8_4:22364201-22364220 None:intergenic 15.0%
!! TTGTAATAAAAGAATAACTT+TGG + chr8_4:22364201-22364220 None:intergenic 15.0%
!! TTACAAGTTTAGAAAAGAAA+GGG - chr8_4:22364237-22364256 Msa1319410:CDS 20.0%
!! ACAATGAAATTAAGAACTAT+TGG - chr8_4:22364665-22364684 Msa1319410:intron 20.0%
!! TTAGAGAATAAAGATTCAAT+TGG - chr8_4:22364793-22364812 Msa1319410:CDS 20.0%
!! ATAAATTCTTGGAAATTGAT+CGG - chr8_4:22364902-22364921 Msa1319410:intron 20.0%
!! TTACAAGTTTAGAAAAGAAA+GGG - chr8_4:22364237-22364256 Msa1319410:CDS 20.0%
!! ACAATGAAATTAAGAACTAT+TGG - chr8_4:22364665-22364684 Msa1319410:intron 20.0%
!! TTAGAGAATAAAGATTCAAT+TGG - chr8_4:22364793-22364812 Msa1319410:CDS 20.0%
!! ATAAATTCTTGGAAATTGAT+CGG - chr8_4:22364902-22364921 Msa1319410:intron 20.0%
! CTTACAAGTTTAGAAAAGAA+AGG - chr8_4:22364236-22364255 Msa1319410:CDS 25.0%
! TACAAGTTTAGAAAAGAAAG+GGG - chr8_4:22364238-22364257 Msa1319410:CDS 25.0%
! AAGAAGAGGATTTGATTATT+AGG - chr8_4:22364395-22364414 Msa1319410:CDS 25.0%
! TCTAATTCTAAATGCATGTT+CGG - chr8_4:22365026-22365045 Msa1319410:CDS 25.0%
! ATCATATTGGATTGTGATAT+CGG - chr8_4:22365119-22365138 Msa1319410:exon 25.0%
! CTTACAAGTTTAGAAAAGAA+AGG - chr8_4:22364236-22364255 Msa1319410:CDS 25.0%
! TACAAGTTTAGAAAAGAAAG+GGG - chr8_4:22364238-22364257 Msa1319410:CDS 25.0%
! AAGAAGAGGATTTGATTATT+AGG - chr8_4:22364395-22364414 Msa1319410:CDS 25.0%
! TCTAATTCTAAATGCATGTT+CGG - chr8_4:22365026-22365045 Msa1319410:CDS 25.0%
! ATCATATTGGATTGTGATAT+CGG - chr8_4:22365119-22365138 Msa1319410:exon 25.0%
! TTAGTAGGTCCATATTTTCT+GGG + chr8_4:22364062-22364081 None:intergenic 30.0%
CTATTCATTGTTTCCTTAGT+AGG + chr8_4:22364077-22364096 None:intergenic 30.0%
ACTAAGGAAACAATGAATAG+AGG - chr8_4:22364077-22364096 Msa1319410:three_prime_UTR 30.0%
ATTACCTGAATTGTTTGCAA+CGG + chr8_4:22364174-22364193 None:intergenic 30.0%
ACAAGTTTAGAAAAGAAAGG+GGG - chr8_4:22364239-22364258 Msa1319410:CDS 30.0%
!! TTTTGTTTGCAGGTTTGAAT+AGG - chr8_4:22364299-22364318 Msa1319410:CDS 30.0%
! ATCTGAAATGTGTGATACAT+AGG - chr8_4:22364494-22364513 Msa1319410:CDS 30.0%
GTTAACTTTCATAGCATTTG+TGG - chr8_4:22364579-22364598 Msa1319410:intron 30.0%
!!! TGGAGTTTTTTGGTATATGA+AGG - chr8_4:22364605-22364624 Msa1319410:intron 30.0%
!!! AGTTTTTTGGTATATGAAGG+TGG - chr8_4:22364608-22364627 Msa1319410:intron 30.0%
GAGAATAAAGATTCAATTGG+TGG - chr8_4:22364796-22364815 Msa1319410:CDS 30.0%
TGATTGGGTCAATAAATTCT+TGG - chr8_4:22364891-22364910 Msa1319410:intron 30.0%
TACATGACATTATACTTCAC+TGG + chr8_4:22364989-22365008 None:intergenic 30.0%
CTAATTCTAAATGCATGTTC+GGG - chr8_4:22365027-22365046 Msa1319410:CDS 30.0%
CAGCTTCAACAAAATCATAT+TGG - chr8_4:22365106-22365125 Msa1319410:CDS 30.0%
! TTAGTAGGTCCATATTTTCT+GGG + chr8_4:22364062-22364081 None:intergenic 30.0%
CTATTCATTGTTTCCTTAGT+AGG + chr8_4:22364077-22364096 None:intergenic 30.0%
ACTAAGGAAACAATGAATAG+AGG - chr8_4:22364077-22364096 Msa1319410:three_prime_UTR 30.0%
ATTACCTGAATTGTTTGCAA+CGG + chr8_4:22364174-22364193 None:intergenic 30.0%
ACAAGTTTAGAAAAGAAAGG+GGG - chr8_4:22364239-22364258 Msa1319410:CDS 30.0%
!! TTTTGTTTGCAGGTTTGAAT+AGG - chr8_4:22364299-22364318 Msa1319410:CDS 30.0%
! ATCTGAAATGTGTGATACAT+AGG - chr8_4:22364494-22364513 Msa1319410:CDS 30.0%
GTTAACTTTCATAGCATTTG+TGG - chr8_4:22364579-22364598 Msa1319410:intron 30.0%
!!! TGGAGTTTTTTGGTATATGA+AGG - chr8_4:22364605-22364624 Msa1319410:intron 30.0%
!!! AGTTTTTTGGTATATGAAGG+TGG - chr8_4:22364608-22364627 Msa1319410:intron 30.0%
GAGAATAAAGATTCAATTGG+TGG - chr8_4:22364796-22364815 Msa1319410:CDS 30.0%
TGATTGGGTCAATAAATTCT+TGG - chr8_4:22364891-22364910 Msa1319410:intron 30.0%
TACATGACATTATACTTCAC+TGG + chr8_4:22364989-22365008 None:intergenic 30.0%
CTAATTCTAAATGCATGTTC+GGG - chr8_4:22365027-22365046 Msa1319410:CDS 30.0%
CAGCTTCAACAAAATCATAT+TGG - chr8_4:22365106-22365125 Msa1319410:CDS 30.0%
! CTTAGTAGGTCCATATTTTC+TGG + chr8_4:22364063-22364082 None:intergenic 35.0%
CAGAAAATATGGACCTACTA+AGG - chr8_4:22364061-22364080 Msa1319410:three_prime_UTR 35.0%
AAACAATGAATAGAGGAGCA+TGG - chr8_4:22364084-22364103 Msa1319410:three_prime_UTR 35.0%
ATTTCTTGGCACCATGAATT+TGG + chr8_4:22364145-22364164 None:intergenic 35.0%
! AAATTCATGGTGCCAAGAAA+TGG - chr8_4:22364144-22364163 Msa1319410:three_prime_UTR 35.0%
AAAACCGTTGCAAACAATTC+AGG - chr8_4:22364167-22364186 Msa1319410:three_prime_UTR 35.0%
CAAAATTTCAGCACTTGCTT+TGG + chr8_4:22364284-22364303 None:intergenic 35.0%
!! AGTGCTGAAATTTTGTTTGC+AGG - chr8_4:22364289-22364308 Msa1319410:CDS 35.0%
TTAGACCCAATATCAAGAGA+GGG - chr8_4:22364359-22364378 Msa1319410:CDS 35.0%
ATGTTCCCTCTCTTGATATT+GGG + chr8_4:22364367-22364386 None:intergenic 35.0%
AATGTTCCCTCTCTTGATAT+TGG + chr8_4:22364368-22364387 None:intergenic 35.0%
GAACATTTCAGATGAAGAAG+AGG - chr8_4:22364381-22364400 Msa1319410:CDS 35.0%
ATTAGGCTTCACAAACTTCT+TGG - chr8_4:22364412-22364431 Msa1319410:CDS 35.0%
TTCACAAACTTCTTGGAAAC+AGG - chr8_4:22364419-22364438 Msa1319410:CDS 35.0%
TTTCATAGCATTTGTGGTGA+TGG - chr8_4:22364585-22364604 Msa1319410:intron 35.0%
!!! TTTGTGGTGATGGAGTTTTT+TGG - chr8_4:22364595-22364614 Msa1319410:intron 35.0%
! TTTTCCACTGAAGAACCATA+TGG - chr8_4:22364865-22364884 Msa1319410:intron 35.0%
TTTCCACTGAAGAACCATAT+GGG - chr8_4:22364866-22364885 Msa1319410:intron 35.0%
AAGAACCATATGGGTTTGAT+TGG - chr8_4:22364875-22364894 Msa1319410:intron 35.0%
AGAACCATATGGGTTTGATT+GGG - chr8_4:22364876-22364895 Msa1319410:intron 35.0%
! CTTAGTAGGTCCATATTTTC+TGG + chr8_4:22364063-22364082 None:intergenic 35.0%
CAGAAAATATGGACCTACTA+AGG - chr8_4:22364061-22364080 Msa1319410:three_prime_UTR 35.0%
AAACAATGAATAGAGGAGCA+TGG - chr8_4:22364084-22364103 Msa1319410:three_prime_UTR 35.0%
ATTTCTTGGCACCATGAATT+TGG + chr8_4:22364145-22364164 None:intergenic 35.0%
! AAATTCATGGTGCCAAGAAA+TGG - chr8_4:22364144-22364163 Msa1319410:three_prime_UTR 35.0%
AAAACCGTTGCAAACAATTC+AGG - chr8_4:22364167-22364186 Msa1319410:three_prime_UTR 35.0%
CAAAATTTCAGCACTTGCTT+TGG + chr8_4:22364284-22364303 None:intergenic 35.0%
!! AGTGCTGAAATTTTGTTTGC+AGG - chr8_4:22364289-22364308 Msa1319410:CDS 35.0%
TTAGACCCAATATCAAGAGA+GGG - chr8_4:22364359-22364378 Msa1319410:CDS 35.0%
ATGTTCCCTCTCTTGATATT+GGG + chr8_4:22364367-22364386 None:intergenic 35.0%
AATGTTCCCTCTCTTGATAT+TGG + chr8_4:22364368-22364387 None:intergenic 35.0%
GAACATTTCAGATGAAGAAG+AGG - chr8_4:22364381-22364400 Msa1319410:CDS 35.0%
ATTAGGCTTCACAAACTTCT+TGG - chr8_4:22364412-22364431 Msa1319410:CDS 35.0%
TTCACAAACTTCTTGGAAAC+AGG - chr8_4:22364419-22364438 Msa1319410:CDS 35.0%
TTTCATAGCATTTGTGGTGA+TGG - chr8_4:22364585-22364604 Msa1319410:intron 35.0%
!!! TTTGTGGTGATGGAGTTTTT+TGG - chr8_4:22364595-22364614 Msa1319410:intron 35.0%
! TTTTCCACTGAAGAACCATA+TGG - chr8_4:22364865-22364884 Msa1319410:intron 35.0%
TTTCCACTGAAGAACCATAT+GGG - chr8_4:22364866-22364885 Msa1319410:intron 35.0%
AAGAACCATATGGGTTTGAT+TGG - chr8_4:22364875-22364894 Msa1319410:intron 35.0%
AGAACCATATGGGTTTGATT+GGG - chr8_4:22364876-22364895 Msa1319410:intron 35.0%
GTTATGGCACCCAGAAAATA+TGG - chr8_4:22364050-22364069 Msa1319410:three_prime_UTR 40.0%
! TAGCTTTTGATCTTCCTCCT+GGG + chr8_4:22364111-22364130 None:intergenic 40.0%
GCACAATGCATCCAAATTCA+TGG - chr8_4:22364131-22364150 Msa1319410:three_prime_UTR 40.0%
! TGCAACGGTTTTCCATTTCT+TGG + chr8_4:22364159-22364178 None:intergenic 40.0%
TTTGCAGGTTTGAATAGGTG+TGG - chr8_4:22364304-22364323 Msa1319410:CDS 40.0%
CTTAGACCCAATATCAAGAG+AGG - chr8_4:22364358-22364377 Msa1319410:CDS 40.0%
CAAAAAAGCCAGTCACATAG+AGG - chr8_4:22364702-22364721 Msa1319410:intron 40.0%
! TGGTTTTTCCTCTATGTGAC+TGG + chr8_4:22364713-22364732 None:intergenic 40.0%
! TCTTGTGTAGTGGAAGTTTC+TGG + chr8_4:22364733-22364752 None:intergenic 40.0%
GGCAATAGTTTCTTGTGTAG+TGG + chr8_4:22364743-22364762 None:intergenic 40.0%
ATTGCCCAAGACAATGTTGT+TGG - chr8_4:22364757-22364776 Msa1319410:CDS 40.0%
TTGCCCAAGACAATGTTGTT+GGG - chr8_4:22364758-22364777 Msa1319410:CDS 40.0%
ATCCCCAACAACATTGTCTT+GGG + chr8_4:22364764-22364783 None:intergenic 40.0%
TATCCCCAACAACATTGTCT+TGG + chr8_4:22364765-22364784 None:intergenic 40.0%
AAACCCATATGGTTCTTCAG+TGG + chr8_4:22364872-22364891 None:intergenic 40.0%
TTGACCCAATCAAACCCATA+TGG + chr8_4:22364883-22364902 None:intergenic 40.0%
CTGAGAACAGAAACATCTGA+GGG - chr8_4:22364935-22364954 Msa1319410:intron 40.0%
GTTATGGCACCCAGAAAATA+TGG - chr8_4:22364050-22364069 Msa1319410:three_prime_UTR 40.0%
! TAGCTTTTGATCTTCCTCCT+GGG + chr8_4:22364111-22364130 None:intergenic 40.0%
GCACAATGCATCCAAATTCA+TGG - chr8_4:22364131-22364150 Msa1319410:three_prime_UTR 40.0%
! TGCAACGGTTTTCCATTTCT+TGG + chr8_4:22364159-22364178 None:intergenic 40.0%
TTTGCAGGTTTGAATAGGTG+TGG - chr8_4:22364304-22364323 Msa1319410:CDS 40.0%
CTTAGACCCAATATCAAGAG+AGG - chr8_4:22364358-22364377 Msa1319410:CDS 40.0%
CAAAAAAGCCAGTCACATAG+AGG - chr8_4:22364702-22364721 Msa1319410:intron 40.0%
! TGGTTTTTCCTCTATGTGAC+TGG + chr8_4:22364713-22364732 None:intergenic 40.0%
! TCTTGTGTAGTGGAAGTTTC+TGG + chr8_4:22364733-22364752 None:intergenic 40.0%
GGCAATAGTTTCTTGTGTAG+TGG + chr8_4:22364743-22364762 None:intergenic 40.0%
ATTGCCCAAGACAATGTTGT+TGG - chr8_4:22364757-22364776 Msa1319410:CDS 40.0%
TTGCCCAAGACAATGTTGTT+GGG - chr8_4:22364758-22364777 Msa1319410:CDS 40.0%
ATCCCCAACAACATTGTCTT+GGG + chr8_4:22364764-22364783 None:intergenic 40.0%
TATCCCCAACAACATTGTCT+TGG + chr8_4:22364765-22364784 None:intergenic 40.0%
AAACCCATATGGTTCTTCAG+TGG + chr8_4:22364872-22364891 None:intergenic 40.0%
TTGACCCAATCAAACCCATA+TGG + chr8_4:22364883-22364902 None:intergenic 40.0%
CTGAGAACAGAAACATCTGA+GGG - chr8_4:22364935-22364954 Msa1319410:intron 40.0%
! TTCTGGGTGCCATAACAATG+AGG + chr8_4:22364046-22364065 None:intergenic 45.0%
!! CTAGCTTTTGATCTTCCTCC+TGG + chr8_4:22364112-22364131 None:intergenic 45.0%
ATAGGTGTGGAAAGAGTTGC+AGG - chr8_4:22364317-22364336 Msa1319410:CDS 45.0%
GAAAGAGTTGCAGGCTAAGA+TGG - chr8_4:22364326-22364345 Msa1319410:CDS 45.0%
!! TACTCTATGAAGCACCGACA+CGG - chr8_4:22364449-22364468 Msa1319410:CDS 45.0%
TGATAGCTGGAAGACTTCCA+GGG - chr8_4:22364635-22364654 Msa1319410:intron 45.0%
ATTTCATTGTCTGTTCGCCC+TGG + chr8_4:22364655-22364674 None:intergenic 45.0%
TGCCCAAGACAATGTTGTTG+GGG - chr8_4:22364759-22364778 Msa1319410:CDS 45.0%
! CCTCAGATGTTTCTGTTCTC+AGG + chr8_4:22364937-22364956 None:intergenic 45.0%
CCTGAGAACAGAAACATCTG+AGG - chr8_4:22364934-22364953 Msa1319410:intron 45.0%
! TTCTGGGTGCCATAACAATG+AGG + chr8_4:22364046-22364065 None:intergenic 45.0%
!! CTAGCTTTTGATCTTCCTCC+TGG + chr8_4:22364112-22364131 None:intergenic 45.0%
ATAGGTGTGGAAAGAGTTGC+AGG - chr8_4:22364317-22364336 Msa1319410:CDS 45.0%
GAAAGAGTTGCAGGCTAAGA+TGG - chr8_4:22364326-22364345 Msa1319410:CDS 45.0%
!! TACTCTATGAAGCACCGACA+CGG - chr8_4:22364449-22364468 Msa1319410:CDS 45.0%
TGATAGCTGGAAGACTTCCA+GGG - chr8_4:22364635-22364654 Msa1319410:intron 45.0%
ATTTCATTGTCTGTTCGCCC+TGG + chr8_4:22364655-22364674 None:intergenic 45.0%
TGCCCAAGACAATGTTGTTG+GGG - chr8_4:22364759-22364778 Msa1319410:CDS 45.0%
! CCTCAGATGTTTCTGTTCTC+AGG + chr8_4:22364937-22364956 None:intergenic 45.0%
CCTGAGAACAGAAACATCTG+AGG - chr8_4:22364934-22364953 Msa1319410:intron 45.0%
TGTCTGTTGTGTGACCGTGT+CGG + chr8_4:22364466-22364485 None:intergenic 50.0%
TGAAGGTGGTCTCTGATAGC+TGG - chr8_4:22364622-22364641 Msa1319410:intron 50.0%
CTGATAGCTGGAAGACTTCC+AGG - chr8_4:22364634-22364653 Msa1319410:intron 50.0%
TGTCTGTTGTGTGACCGTGT+CGG + chr8_4:22364466-22364485 None:intergenic 50.0%
TGAAGGTGGTCTCTGATAGC+TGG - chr8_4:22364622-22364641 Msa1319410:intron 50.0%
CTGATAGCTGGAAGACTTCC+AGG - chr8_4:22364634-22364653 Msa1319410:intron 50.0%
! GAATAGAGGAGCATGGACCC+AGG - chr8_4:22364091-22364110 Msa1319410:three_prime_UTR 55.0%
! GAATAGAGGAGCATGGACCC+AGG - chr8_4:22364091-22364110 Msa1319410:three_prime_UTR 55.0%
! TAGAGGAGCATGGACCCAGG+AGG - chr8_4:22364094-22364113 Msa1319410:three_prime_UTR 60.0%
! TAGAGGAGCATGGACCCAGG+AGG - chr8_4:22364094-22364113 Msa1319410:three_prime_UTR 60.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 22364038 22365148 22364038 ID=Msa1319410;Name=Msa1319410
chr8_4 mRNA 22364038 22365148 22364038 ID=Msa1319410-mRNA-1;Parent=Msa1319410;Name=Msa1319410-mRNA-1;_AED=0.06;_eAED=0.06;_QI=15|1|1|1|1|1|3|194|197
chr8_4 exon 22364038 22364559 22364038 ID=Msa1319410-mRNA-1:exon:7950;Parent=Msa1319410-mRNA-1
chr8_4 exon 22364746 22364875 22364746 ID=Msa1319410-mRNA-1:exon:7949;Parent=Msa1319410-mRNA-1
chr8_4 exon 22364998 22365148 22364998 ID=Msa1319410-mRNA-1:exon:7948;Parent=Msa1319410-mRNA-1
chr8_4 five_prime_UTR 22365134 22365148 22365134 ID=Msa1319410-mRNA-1:five_prime_utr;Parent=Msa1319410-mRNA-1
chr8_4 CDS 22364998 22365133 22364998 ID=Msa1319410-mRNA-1:cds;Parent=Msa1319410-mRNA-1
chr8_4 CDS 22364746 22364875 22364746 ID=Msa1319410-mRNA-1:cds;Parent=Msa1319410-mRNA-1
chr8_4 CDS 22364232 22364559 22364232 ID=Msa1319410-mRNA-1:cds;Parent=Msa1319410-mRNA-1
chr8_4 three_prime_UTR 22364038 22364231 22364038 ID=Msa1319410-mRNA-1:three_prime_utr;Parent=Msa1319410-mRNA-1
Gene Sequence

>Msa1319410

ATGGCACCCAGAAAATATGGACCTACTAAGGAAACAATGAATAGAGGAGCATGGACCCAGGAGGAAGATCAAAAGCTAGCACAATGCATCCAAATTCATGGTGCCAAGAAATGGAAAACCGTTGCAAACAATTCAGGTTTGAATAGGTGTGGAAAGAGTTGCAGGCTAAGATGGTTGAACTATCTTAGACCCAATATCAAGAGAGGGAACATTTCAGATGAAGAAGAGGATTTGATTATTAGGCTTCACAAACTTCTTGGAAACAGGTGGTCTCTGATAGCTGGAAGACTTCCAGGGCGAACAGACAATGAAATTAAGAACTATTGGAATTCTCATTTGTGCAAAAAAGCCAGTCACATAGAGGAAAAACCAGAAACTTCCACTACACAAGAAACTATTGCCCAAGACAATGTTGTTGGGGATAATGCTATGTTAGAGAATAAAGATTCAATTGGTGGAAGTCTTGATTCAGATGTTATCATTGATGTGAATGAATTCTTAGACTTTTCCACTGAAGAACCATATGGGTTTGATTGGGTCAATAAATTCTTGGAAATTGATCGGTTTCACATTCCTGAGAACAGAAACATCTGA
Protein sequence

>Msa1319410

MAPRKYGPTKETMNRGAWTQEEDQKLAQCIQIHGAKKWKTVANNSGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNSHLCKKASHIEEKPETSTTQETIAQDNVVGDNAMLENKDSIGGSLDSDVIIDVNEFLDFSTEEPYGFDWVNKFLEIDRFHIPENRNI*