Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319990 | A0A072TQ96 | 95.000 | 220 | 11 | 0 | 4 | 223 | 404 | 623 | 3.80e-149 | 438 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1185460 | Msa1319990 | 0.810636 | 1.044638e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319990 | MtrunA17_Chr8g0351061 | 95.000 | 220 | 11 | 0 | 4 | 223 | 404 | 623 | 7.33e-153 | 438 |
| Msa1319990 | MtrunA17_Chr1g0163291 | 72.273 | 220 | 60 | 1 | 4 | 223 | 382 | 600 | 1.44e-114 | 339 |
| Msa1319990 | MtrunA17_Chr3g0115381 | 45.540 | 213 | 114 | 2 | 11 | 222 | 545 | 756 | 1.78e-63 | 210 |
| Msa1319990 | MtrunA17_Chr5g0424991 | 54.545 | 99 | 45 | 0 | 11 | 109 | 808 | 906 | 5.83e-33 | 125 |
| Msa1319990 | MtrunA17_Chr5g0403231 | 35.028 | 177 | 104 | 3 | 9 | 177 | 396 | 569 | 4.32e-26 | 105 |
| Msa1319990 | MtrunA17_Chr8g0373901 | 34.078 | 179 | 107 | 3 | 9 | 179 | 399 | 574 | 1.75e-24 | 100 |
| Msa1319990 | MtrunA17_Chr5g0425001 | 38.400 | 125 | 72 | 3 | 102 | 222 | 5 | 128 | 2.57e-22 | 88.2 |
| Msa1319990 | MtrunA17_Chr4g0034351 | 31.461 | 178 | 113 | 4 | 9 | 179 | 390 | 565 | 2.28e-20 | 89.0 |
| Msa1319990 | MtrunA17_Chr5g0399331 | 28.351 | 194 | 121 | 6 | 11 | 190 | 347 | 536 | 6.18e-18 | 82.0 |
| Msa1319990 | MtrunA17_Chr1g0153951 | 29.885 | 174 | 116 | 3 | 18 | 188 | 334 | 504 | 2.98e-15 | 73.9 |
| Msa1319990 | MtrunA17_Chr3g0133631 | 30.412 | 194 | 122 | 5 | 14 | 198 | 347 | 536 | 7.10e-15 | 73.2 |
| Msa1319990 | MtrunA17_Chr5g0402501 | 29.714 | 175 | 116 | 4 | 18 | 188 | 332 | 503 | 8.94e-15 | 72.8 |
| Msa1319990 | MtrunA17_Chr4g0028651 | 30.137 | 146 | 93 | 2 | 14 | 152 | 471 | 614 | 1.51e-13 | 69.3 |
| Msa1319990 | MtrunA17_Chr8g0374741 | 28.492 | 179 | 113 | 5 | 18 | 188 | 383 | 554 | 1.74e-13 | 68.9 |
| Msa1319990 | MtrunA17_Chr5g0435281 | 30.769 | 182 | 118 | 4 | 14 | 192 | 294 | 470 | 2.55e-13 | 68.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1319990 | AT3G11920.1 | 59.908 | 217 | 85 | 2 | 9 | 223 | 414 | 630 | 9.93e-89 | 274 |
| Msa1319990 | AT4G08550.1 | 42.991 | 214 | 120 | 2 | 11 | 223 | 425 | 637 | 2.75e-54 | 184 |
| Msa1319990 | AT4G08550.2 | 42.991 | 214 | 120 | 2 | 11 | 223 | 479 | 691 | 7.71e-54 | 183 |
| Msa1319990 | AT5G66600.2 | 31.638 | 177 | 112 | 2 | 9 | 179 | 366 | 539 | 7.38e-26 | 105 |
| Msa1319990 | AT5G66600.7 | 31.638 | 177 | 112 | 2 | 9 | 179 | 332 | 505 | 8.19e-26 | 105 |
| Msa1319990 | AT5G66600.14 | 31.638 | 177 | 112 | 2 | 9 | 179 | 386 | 559 | 9.26e-26 | 105 |
| Msa1319990 | AT5G66600.1 | 31.638 | 177 | 112 | 2 | 9 | 179 | 386 | 559 | 9.26e-26 | 105 |
| Msa1319990 | AT5G66600.4 | 31.638 | 177 | 112 | 2 | 9 | 179 | 386 | 559 | 9.26e-26 | 105 |
| Msa1319990 | AT5G66600.9 | 31.638 | 177 | 112 | 2 | 9 | 179 | 386 | 559 | 9.26e-26 | 105 |
| Msa1319990 | AT5G66600.3 | 31.638 | 177 | 112 | 2 | 9 | 179 | 386 | 559 | 9.26e-26 | 105 |
| Msa1319990 | AT3G13000.1 | 31.707 | 205 | 130 | 4 | 9 | 206 | 320 | 521 | 3.59e-25 | 103 |
| Msa1319990 | AT3G13000.3 | 31.707 | 205 | 130 | 4 | 9 | 206 | 349 | 550 | 4.03e-25 | 103 |
| Msa1319990 | AT3G13000.2 | 31.707 | 205 | 130 | 4 | 9 | 206 | 349 | 550 | 4.03e-25 | 103 |
| Msa1319990 | AT1G16750.1 | 31.818 | 198 | 127 | 4 | 13 | 204 | 303 | 498 | 6.54e-25 | 102 |
| Msa1319990 | AT2G23700.1 | 32.584 | 178 | 110 | 3 | 9 | 179 | 479 | 653 | 7.63e-21 | 90.9 |
| Msa1319990 | AT3G18900.6 | 30.065 | 153 | 100 | 1 | 9 | 154 | 226 | 378 | 8.96e-19 | 84.3 |
| Msa1319990 | AT3G18900.3 | 30.065 | 153 | 100 | 1 | 9 | 154 | 226 | 378 | 8.96e-19 | 84.3 |
| Msa1319990 | AT3G18900.4 | 30.065 | 153 | 100 | 1 | 9 | 154 | 307 | 459 | 1.27e-18 | 84.3 |
| Msa1319990 | AT3G18900.5 | 30.065 | 153 | 100 | 1 | 9 | 154 | 302 | 454 | 1.27e-18 | 84.3 |
| Msa1319990 | AT5G42690.3 | 32.487 | 197 | 117 | 8 | 9 | 198 | 266 | 453 | 1.83e-18 | 83.6 |
| Msa1319990 | AT5G47380.5 | 30.890 | 191 | 118 | 6 | 11 | 190 | 303 | 490 | 2.37e-18 | 83.6 |
| Msa1319990 | AT5G42690.1 | 32.979 | 188 | 110 | 8 | 18 | 198 | 326 | 504 | 2.43e-18 | 83.6 |
| Msa1319990 | AT5G42690.2 | 32.979 | 188 | 110 | 8 | 18 | 198 | 327 | 505 | 2.46e-18 | 83.6 |
| Msa1319990 | AT5G42690.4 | 32.979 | 188 | 110 | 8 | 18 | 198 | 327 | 505 | 2.46e-18 | 83.6 |
| Msa1319990 | AT5G42690.5 | 32.487 | 197 | 117 | 8 | 9 | 198 | 291 | 478 | 2.49e-18 | 83.6 |
| Msa1319990 | AT5G47380.1 | 30.890 | 191 | 118 | 6 | 11 | 190 | 359 | 546 | 2.78e-18 | 83.6 |
| Msa1319990 | AT5G47380.4 | 30.890 | 191 | 118 | 6 | 11 | 190 | 359 | 546 | 3.02e-18 | 83.2 |
| Msa1319990 | AT5G66600.12 | 34.109 | 129 | 79 | 1 | 9 | 131 | 386 | 514 | 1.20e-17 | 81.3 |
| Msa1319990 | AT5G66600.11 | 34.109 | 129 | 79 | 1 | 9 | 131 | 386 | 514 | 1.20e-17 | 81.3 |
| Msa1319990 | AT5G66600.6 | 34.109 | 129 | 79 | 1 | 9 | 131 | 386 | 514 | 1.20e-17 | 81.3 |
| Msa1319990 | AT5G66600.13 | 34.109 | 129 | 79 | 1 | 9 | 131 | 386 | 514 | 1.20e-17 | 81.3 |
| Msa1319990 | AT4G37080.1 | 30.319 | 188 | 106 | 7 | 14 | 188 | 379 | 554 | 2.40e-15 | 74.7 |
| Msa1319990 | AT4G37080.2 | 30.319 | 188 | 106 | 7 | 14 | 188 | 392 | 567 | 2.56e-15 | 74.7 |
| Msa1319990 | AT4G37080.3 | 30.319 | 188 | 106 | 7 | 14 | 188 | 392 | 567 | 2.56e-15 | 74.7 |
| Msa1319990 | AT1G16750.2 | 46.053 | 76 | 41 | 0 | 13 | 88 | 303 | 378 | 4.73e-15 | 73.6 |
| Msa1319990 | AT5G60720.1 | 29.082 | 196 | 115 | 5 | 14 | 192 | 460 | 648 | 2.24e-14 | 72.0 |
| Msa1319990 | AT3G18900.1 | 30.769 | 130 | 83 | 1 | 9 | 131 | 307 | 436 | 2.55e-14 | 71.6 |
| Msa1319990 | AT2G39690.2 | 28.293 | 205 | 138 | 6 | 14 | 213 | 200 | 400 | 4.69e-14 | 70.9 |
| Msa1319990 | AT2G39690.4 | 28.293 | 205 | 138 | 6 | 14 | 213 | 281 | 481 | 7.24e-14 | 70.5 |
| Msa1319990 | AT2G39690.5 | 28.293 | 205 | 138 | 6 | 14 | 213 | 307 | 507 | 8.69e-14 | 70.1 |
| Msa1319990 | AT1G43020.1 | 31.288 | 163 | 93 | 5 | 13 | 164 | 217 | 371 | 1.41e-13 | 69.3 |
| Msa1319990 | AT2G39690.8 | 26.887 | 212 | 131 | 6 | 14 | 213 | 281 | 480 | 4.04e-13 | 68.2 |
| Msa1319990 | AT5G47380.2 | 35.821 | 134 | 75 | 3 | 11 | 134 | 359 | 491 | 4.18e-13 | 68.2 |
| Msa1319990 | AT2G39690.1 | 26.887 | 212 | 131 | 6 | 14 | 213 | 307 | 506 | 4.49e-13 | 68.2 |
| Msa1319990 | AT1G76620.1 | 24.885 | 217 | 144 | 6 | 13 | 219 | 298 | 505 | 1.17e-12 | 67.0 |
| Msa1319990 | AT5G47380.3 | 35.659 | 129 | 72 | 3 | 11 | 129 | 359 | 486 | 1.59e-12 | 66.6 |
| Msa1319990 | AT1G21060.1 | 23.445 | 209 | 149 | 4 | 13 | 214 | 288 | 492 | 3.43e-11 | 62.4 |
| Msa1319990 | AT1G21060.2 | 23.445 | 209 | 149 | 4 | 13 | 214 | 276 | 480 | 3.88e-11 | 62.4 |
Find 52 sgRNAs with CRISPR-Local
Find 176 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATGATTTCCTGTATTTAAT+TGG | 0.152945 | 8_4:-24139086 | Msa1319990:CDS |
| TGCAGGTTCAGTGGTGATTT+TGG | 0.218554 | 8_4:-24138335 | Msa1319990:intron |
| TTTATATGAATTATCTGTTT+TGG | 0.219872 | 8_4:+24138137 | None:intergenic |
| ACAAAGTCCAAAGTGAAATA+AGG | 0.231786 | 8_4:+24138589 | None:intergenic |
| TTAATGACCAATCAAAATTC+TGG | 0.292429 | 8_4:+24138207 | None:intergenic |
| ATCACTCAAATTCTTTCCTT+TGG | 0.312487 | 8_4:+24138166 | None:intergenic |
| GTCACTAGACCAGCTTTATT+AGG | 0.316643 | 8_4:+24138269 | None:intergenic |
| CTCCGATCAATTACACCTTC+TGG | 0.333359 | 8_4:+24139119 | None:intergenic |
| CAAAGTCCAAAGTGAAATAA+GGG | 0.340012 | 8_4:+24138590 | None:intergenic |
| ACACATCTCTTGAGTGATAA+TGG | 0.362434 | 8_4:-24138248 | Msa1319990:CDS |
| AGTGCTAAAGGGCTTCATTA+AGG | 0.365755 | 8_4:+24138995 | None:intergenic |
| TTCTGGTAAGATATATTAAC+AGG | 0.382018 | 8_4:+24138224 | None:intergenic |
| CGCTTATCTCCAGTGCTAAA+GGG | 0.414851 | 8_4:+24138984 | None:intergenic |
| GGTGAAAAGAACCTCACGTT+TGG | 0.421128 | 8_4:+24138548 | None:intergenic |
| TTTCACTTTGGACTTTGTAA+TGG | 0.424100 | 8_4:-24138584 | Msa1319990:CDS |
| ATTATACAAATTTAAGAAGA+AGG | 0.426703 | 8_4:+24139178 | None:intergenic |
| CCGCTTATCTCCAGTGCTAA+AGG | 0.430792 | 8_4:+24138983 | None:intergenic |
| TCAATAGTGGCGAGAGAGTA+AGG | 0.443251 | 8_4:+24139056 | None:intergenic |
| CTCGCTGCAGATCCTGAGTC+AGG | 0.452694 | 8_4:+24139237 | None:intergenic |
| TTGAACCCCTTATTTCACTT+TGG | 0.463146 | 8_4:-24138596 | Msa1319990:CDS |
| GATTTCCTGTATTTAATTGG+AGG | 0.474346 | 8_4:-24139083 | Msa1319990:CDS |
| GATGTCCTCCAATTAAATAC+AGG | 0.474864 | 8_4:+24139078 | None:intergenic |
| GTGAAAAGAACCTCACGTTT+GGG | 0.479847 | 8_4:+24138549 | None:intergenic |
| TTAATGAAGCCCTTTAGCAC+TGG | 0.484515 | 8_4:-24138993 | Msa1319990:CDS |
| AAGAGAAAGAAGTGCTTAAG+TGG | 0.485757 | 8_4:-24138310 | Msa1319990:CDS |
| CTTAAATTTGTATAATGCCA+TGG | 0.489722 | 8_4:-24139171 | Msa1319990:CDS |
| GAGAATACCATTCTCAATAG+TGG | 0.497027 | 8_4:+24139043 | None:intergenic |
| ATTCATGCTGTCATTAGCGT+CGG | 0.517667 | 8_4:-24139146 | Msa1319990:CDS |
| GTCATTAAATTCTTGAGTAG+TGG | 0.520931 | 8_4:-24138192 | Msa1319990:exon |
| TACTTGAAACCTAATAAAGC+TGG | 0.523318 | 8_4:-24138278 | Msa1319990:CDS |
| ATACAGGAAATCATTGAAGA+AGG | 0.525977 | 8_4:+24139094 | None:intergenic |
| AAGGGCTTCATTAAGGAATA+CGG | 0.526182 | 8_4:+24139002 | None:intergenic |
| GTCCAGAAGGTGTAATTGAT+CGG | 0.546203 | 8_4:-24139121 | Msa1319990:CDS |
| ACTTGAACATCCGCGCGAGA+TGG | 0.556169 | 8_4:+24138438 | None:intergenic |
| ATCTCGCGCGGATGTTCAAG+TGG | 0.561832 | 8_4:-24138436 | Msa1319990:intron |
| TCTCTCGCCACTATTGAGAA+TGG | 0.562266 | 8_4:-24139050 | Msa1319990:CDS |
| TTCATGCTGTCATTAGCGTC+GGG | 0.564186 | 8_4:-24139145 | Msa1319990:CDS |
| GATGGACAGTTCTCTTCTCT+AGG | 0.581072 | 8_4:+24138456 | None:intergenic |
| AGTTCATCTACAACTCTATG+AGG | 0.585381 | 8_4:+24138527 | None:intergenic |
| TTAGGTAGGAGTAGATTCTG+TGG | 0.587781 | 8_4:-24138031 | None:intergenic |
| CAGGTATATAAACCTGACTC+AGG | 0.599154 | 8_4:-24139249 | Msa1319990:CDS |
| ATTAGCGTCGGGAGTCCAGA+AGG | 0.599430 | 8_4:-24139134 | Msa1319990:CDS |
| AGAGTTGTAGATGAACTAAG+AGG | 0.604358 | 8_4:-24138521 | Msa1319990:CDS |
| CACTGGAGATAAGCGGCTTG+AGG | 0.604566 | 8_4:-24138976 | Msa1319990:intron |
| CCTTTAGCACTGGAGATAAG+CGG | 0.616870 | 8_4:-24138983 | Msa1319990:CDS |
| TCTTGAGTAGTGGCAGCCAA+AGG | 0.638308 | 8_4:-24138182 | Msa1319990:exon |
| AAAGTCCAAAGTGAAATAAG+GGG | 0.648434 | 8_4:+24138591 | None:intergenic |
| GTATTCTCAGATGTAATCAG+AGG | 0.669506 | 8_4:-24139028 | Msa1319990:CDS |
| AATGACAGCATGAATGACCA+TGG | 0.669797 | 8_4:+24139154 | None:intergenic |
| AGAGAACTGTCCATCTCGCG+CGG | 0.673938 | 8_4:-24138448 | Msa1319990:CDS |
| CAAAATCTAGCCCAAACGTG+AGG | 0.679970 | 8_4:-24138559 | Msa1319990:CDS |
| CTTGTAAAGCTACATCAGCG+AGG | 0.761800 | 8_4:-24139777 | Msa1319990:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTCAAAAAAAAAAAAA+AGG | - | chr8_4:24139754-24139773 | Msa1319990:intron | 10.0% |
| !!! | AAAAAAAAAAAGGTATTTTT+AGG | - | chr8_4:24139764-24139783 | Msa1319990:intron | 10.0% |
| !!! | GTTTTTCAAAAAAAAAAAAA+AGG | - | chr8_4:24139754-24139773 | Msa1319990:intron | 10.0% |
| !!! | AAAAAAAAAAAGGTATTTTT+AGG | - | chr8_4:24139764-24139783 | Msa1319990:intron | 10.0% |
| !! | ATTATACAAATTTAAGAAGA+AGG | + | chr8_4:24138638-24138657 | None:intergenic | 15.0% |
| !! | AAAAATATATTTCGTAAGAA+AGG | + | chr8_4:24139459-24139478 | None:intergenic | 15.0% |
| !!! | TTATATGAATTATCTGTTTT+GGG | + | chr8_4:24139678-24139697 | None:intergenic | 15.0% |
| !!! | TTTATATGAATTATCTGTTT+TGG | + | chr8_4:24139679-24139698 | None:intergenic | 15.0% |
| !! | ATTATACAAATTTAAGAAGA+AGG | + | chr8_4:24138638-24138657 | None:intergenic | 15.0% |
| !! | AAAAATATATTTCGTAAGAA+AGG | + | chr8_4:24139459-24139478 | None:intergenic | 15.0% |
| !!! | TTATATGAATTATCTGTTTT+GGG | + | chr8_4:24139678-24139697 | None:intergenic | 15.0% |
| !!! | TTTATATGAATTATCTGTTT+TGG | + | chr8_4:24139679-24139698 | None:intergenic | 15.0% |
| !! | TTTCATAACAAAATAGTTCT+TGG | - | chr8_4:24138176-24138195 | Msa1319990:three_prime_UTR | 20.0% |
| !! | AACCTTTGTATTATACATTA+CGG | - | chr8_4:24138349-24138368 | Msa1319990:intron | 20.0% |
| !! | AATGATTTCCTGTATTTAAT+TGG | - | chr8_4:24138727-24138746 | Msa1319990:intron | 20.0% |
| !! | AACATGTAAATGATTGATTA+TGG | - | chr8_4:24139147-24139166 | Msa1319990:CDS | 20.0% |
| !!! | AAAAAAAGGTATTTTTAGGT+AGG | - | chr8_4:24139768-24139787 | Msa1319990:intron | 20.0% |
| !! | TTTCATAACAAAATAGTTCT+TGG | - | chr8_4:24138176-24138195 | Msa1319990:three_prime_UTR | 20.0% |
| !! | AACCTTTGTATTATACATTA+CGG | - | chr8_4:24138349-24138368 | Msa1319990:intron | 20.0% |
| !! | AATGATTTCCTGTATTTAAT+TGG | - | chr8_4:24138727-24138746 | Msa1319990:intron | 20.0% |
| !! | AACATGTAAATGATTGATTA+TGG | - | chr8_4:24139147-24139166 | Msa1319990:CDS | 20.0% |
| !!! | AAAAAAAGGTATTTTTAGGT+AGG | - | chr8_4:24139768-24139787 | Msa1319990:intron | 20.0% |
| ! | GAATAAGTAAGAAAATGAGA+AGG | + | chr8_4:24138105-24138124 | None:intergenic | 25.0% |
| ! | TGATATTAAAGACAAAAGCT+AGG | + | chr8_4:24138489-24138508 | None:intergenic | 25.0% |
| ! | CTTAAATTTGTATAATGCCA+TGG | - | chr8_4:24138642-24138661 | Msa1319990:intron | 25.0% |
| !! | GTTCAAGTTAATTTCCAATA+TGG | - | chr8_4:24138866-24138885 | Msa1319990:intron | 25.0% |
| ! | ATGATATATACAAGCCATAT+TGG | + | chr8_4:24138883-24138902 | None:intergenic | 25.0% |
| ! | TAACTTCAAGCTATATGATT+TGG | + | chr8_4:24139010-24139029 | None:intergenic | 25.0% |
| !!! | CTTACGAAATATATTTTTGC+AGG | - | chr8_4:24139461-24139480 | Msa1319990:intron | 25.0% |
| ! | TTCTGGTAAGATATATTAAC+AGG | + | chr8_4:24139592-24139611 | None:intergenic | 25.0% |
| !!! | TATCTTACCAGAATTTTGAT+TGG | - | chr8_4:24139599-24139618 | Msa1319990:intron | 25.0% |
| ! | TTAATGACCAATCAAAATTC+TGG | + | chr8_4:24139609-24139628 | None:intergenic | 25.0% |
| ! | GAATAAGTAAGAAAATGAGA+AGG | + | chr8_4:24138105-24138124 | None:intergenic | 25.0% |
| ! | TGATATTAAAGACAAAAGCT+AGG | + | chr8_4:24138489-24138508 | None:intergenic | 25.0% |
| ! | CTTAAATTTGTATAATGCCA+TGG | - | chr8_4:24138642-24138661 | Msa1319990:intron | 25.0% |
| !! | GTTCAAGTTAATTTCCAATA+TGG | - | chr8_4:24138866-24138885 | Msa1319990:intron | 25.0% |
| ! | ATGATATATACAAGCCATAT+TGG | + | chr8_4:24138883-24138902 | None:intergenic | 25.0% |
| ! | TAACTTCAAGCTATATGATT+TGG | + | chr8_4:24139010-24139029 | None:intergenic | 25.0% |
| !!! | CTTACGAAATATATTTTTGC+AGG | - | chr8_4:24139461-24139480 | Msa1319990:intron | 25.0% |
| ! | TTCTGGTAAGATATATTAAC+AGG | + | chr8_4:24139592-24139611 | None:intergenic | 25.0% |
| !!! | TATCTTACCAGAATTTTGAT+TGG | - | chr8_4:24139599-24139618 | Msa1319990:intron | 25.0% |
| ! | TTAATGACCAATCAAAATTC+TGG | + | chr8_4:24139609-24139628 | None:intergenic | 25.0% |
| ATAATGTACAGTCAATGGTA+AGG | - | chr8_4:24138222-24138241 | Msa1319990:CDS | 30.0% | |
| GACCGTAATGTATAATACAA+AGG | + | chr8_4:24138354-24138373 | None:intergenic | 30.0% | |
| ! | TTATACATTACGGTCCATTT+TGG | - | chr8_4:24138359-24138378 | Msa1319990:intron | 30.0% |
| TGATGGAAAACATCGAAAAA+TGG | + | chr8_4:24138427-24138446 | None:intergenic | 30.0% | |
| CCTGCAATTAGAAAGAAAAA+TGG | + | chr8_4:24138548-24138567 | None:intergenic | 30.0% | |
| !! | CCATTTTTCTTTCTAATTGC+AGG | - | chr8_4:24138545-24138564 | Msa1319990:CDS | 30.0% |
| ATACAGGAAATCATTGAAGA+AGG | + | chr8_4:24138722-24138741 | None:intergenic | 30.0% | |
| GATTTCCTGTATTTAATTGG+AGG | - | chr8_4:24138730-24138749 | Msa1319990:intron | 30.0% | |
| AAAGTCCAAAGTGAAATAAG+GGG | + | chr8_4:24139225-24139244 | None:intergenic | 30.0% | |
| CAAAGTCCAAAGTGAAATAA+GGG | + | chr8_4:24139226-24139245 | None:intergenic | 30.0% | |
| ACAAAGTCCAAAGTGAAATA+AGG | + | chr8_4:24139227-24139246 | None:intergenic | 30.0% | |
| TTTCACTTTGGACTTTGTAA+TGG | - | chr8_4:24139229-24139248 | Msa1319990:CDS | 30.0% | |
| !!! | TTCTAGCTTTTCTAAAGCTT+TGG | - | chr8_4:24139407-24139426 | Msa1319990:intron | 30.0% |
| !! | ATATATTTTTGCAGGTTCAG+TGG | - | chr8_4:24139469-24139488 | Msa1319990:intron | 30.0% |
| TACTTGAAACCTAATAAAGC+TGG | - | chr8_4:24139535-24139554 | Msa1319990:intron | 30.0% | |
| GTCATTAAATTCTTGAGTAG+TGG | - | chr8_4:24139621-24139640 | Msa1319990:intron | 30.0% | |
| ATCACTCAAATTCTTTCCTT+TGG | + | chr8_4:24139650-24139669 | None:intergenic | 30.0% | |
| ATAATGTACAGTCAATGGTA+AGG | - | chr8_4:24138222-24138241 | Msa1319990:CDS | 30.0% | |
| GACCGTAATGTATAATACAA+AGG | + | chr8_4:24138354-24138373 | None:intergenic | 30.0% | |
| ! | TTATACATTACGGTCCATTT+TGG | - | chr8_4:24138359-24138378 | Msa1319990:intron | 30.0% |
| TGATGGAAAACATCGAAAAA+TGG | + | chr8_4:24138427-24138446 | None:intergenic | 30.0% | |
| CCTGCAATTAGAAAGAAAAA+TGG | + | chr8_4:24138548-24138567 | None:intergenic | 30.0% | |
| !! | CCATTTTTCTTTCTAATTGC+AGG | - | chr8_4:24138545-24138564 | Msa1319990:CDS | 30.0% |
| ATACAGGAAATCATTGAAGA+AGG | + | chr8_4:24138722-24138741 | None:intergenic | 30.0% | |
| GATTTCCTGTATTTAATTGG+AGG | - | chr8_4:24138730-24138749 | Msa1319990:intron | 30.0% | |
| AAAGTCCAAAGTGAAATAAG+GGG | + | chr8_4:24139225-24139244 | None:intergenic | 30.0% | |
| CAAAGTCCAAAGTGAAATAA+GGG | + | chr8_4:24139226-24139245 | None:intergenic | 30.0% | |
| ACAAAGTCCAAAGTGAAATA+AGG | + | chr8_4:24139227-24139246 | None:intergenic | 30.0% | |
| TTTCACTTTGGACTTTGTAA+TGG | - | chr8_4:24139229-24139248 | Msa1319990:CDS | 30.0% | |
| !!! | TTCTAGCTTTTCTAAAGCTT+TGG | - | chr8_4:24139407-24139426 | Msa1319990:intron | 30.0% |
| !! | ATATATTTTTGCAGGTTCAG+TGG | - | chr8_4:24139469-24139488 | Msa1319990:intron | 30.0% |
| TACTTGAAACCTAATAAAGC+TGG | - | chr8_4:24139535-24139554 | Msa1319990:intron | 30.0% | |
| GTCATTAAATTCTTGAGTAG+TGG | - | chr8_4:24139621-24139640 | Msa1319990:intron | 30.0% | |
| ATCACTCAAATTCTTTCCTT+TGG | + | chr8_4:24139650-24139669 | None:intergenic | 30.0% | |
| AAGGAACACACAGATTATCA+AGG | + | chr8_4:24138086-24138105 | None:intergenic | 35.0% | |
| CTACGATAATGTACAGTCAA+TGG | - | chr8_4:24138217-24138236 | Msa1319990:CDS | 35.0% | |
| AAAAGCTAGGAAACTAGAGA+TGG | + | chr8_4:24138476-24138495 | None:intergenic | 35.0% | |
| GATGTCCTCCAATTAAATAC+AGG | + | chr8_4:24138738-24138757 | None:intergenic | 35.0% | |
| GAGAATACCATTCTCAATAG+TGG | + | chr8_4:24138773-24138792 | None:intergenic | 35.0% | |
| GTATTCTCAGATGTAATCAG+AGG | - | chr8_4:24138785-24138804 | Msa1319990:intron | 35.0% | |
| AAGGGCTTCATTAAGGAATA+CGG | + | chr8_4:24138814-24138833 | None:intergenic | 35.0% | |
| AACCTGCAGTTTGTAAGAAA+CGG | + | chr8_4:24139185-24139204 | None:intergenic | 35.0% | |
| ! | TTGAACCCCTTATTTCACTT+TGG | - | chr8_4:24139217-24139236 | Msa1319990:CDS | 35.0% |
| AGTTCATCTACAACTCTATG+AGG | + | chr8_4:24139289-24139308 | None:intergenic | 35.0% | |
| AGAGTTGTAGATGAACTAAG+AGG | - | chr8_4:24139292-24139311 | Msa1319990:intron | 35.0% | |
| !! | AAGAGAAAGAAGTGCTTAAG+TGG | - | chr8_4:24139503-24139522 | Msa1319990:intron | 35.0% |
| ACACATCTCTTGAGTGATAA+TGG | - | chr8_4:24139565-24139584 | Msa1319990:intron | 35.0% | |
| AAGGAACACACAGATTATCA+AGG | + | chr8_4:24138086-24138105 | None:intergenic | 35.0% | |
| CTACGATAATGTACAGTCAA+TGG | - | chr8_4:24138217-24138236 | Msa1319990:CDS | 35.0% | |
| AAAAGCTAGGAAACTAGAGA+TGG | + | chr8_4:24138476-24138495 | None:intergenic | 35.0% | |
| GATGTCCTCCAATTAAATAC+AGG | + | chr8_4:24138738-24138757 | None:intergenic | 35.0% | |
| GAGAATACCATTCTCAATAG+TGG | + | chr8_4:24138773-24138792 | None:intergenic | 35.0% | |
| GTATTCTCAGATGTAATCAG+AGG | - | chr8_4:24138785-24138804 | Msa1319990:intron | 35.0% | |
| AAGGGCTTCATTAAGGAATA+CGG | + | chr8_4:24138814-24138833 | None:intergenic | 35.0% | |
| AACCTGCAGTTTGTAAGAAA+CGG | + | chr8_4:24139185-24139204 | None:intergenic | 35.0% | |
| ! | TTGAACCCCTTATTTCACTT+TGG | - | chr8_4:24139217-24139236 | Msa1319990:CDS | 35.0% |
| AGTTCATCTACAACTCTATG+AGG | + | chr8_4:24139289-24139308 | None:intergenic | 35.0% | |
| AGAGTTGTAGATGAACTAAG+AGG | - | chr8_4:24139292-24139311 | Msa1319990:intron | 35.0% | |
| !! | AAGAGAAAGAAGTGCTTAAG+TGG | - | chr8_4:24139503-24139522 | Msa1319990:intron | 35.0% |
| ACACATCTCTTGAGTGATAA+TGG | - | chr8_4:24139565-24139584 | Msa1319990:intron | 35.0% | |
| !! | GAGTCATGTTGACTCCAAAA+TGG | + | chr8_4:24138376-24138395 | None:intergenic | 40.0% |
| ! | TCGATGTTTTCCATCATCTG+TGG | - | chr8_4:24138431-24138450 | Msa1319990:intron | 40.0% |
| ! | ATGTTTTCCATCATCTGTGG+TGG | - | chr8_4:24138434-24138453 | Msa1319990:intron | 40.0% |
| CAGGTATATAAACCTGACTC+AGG | - | chr8_4:24138564-24138583 | Msa1319990:CDS | 40.0% | |
| AATGACAGCATGAATGACCA+TGG | + | chr8_4:24138662-24138681 | None:intergenic | 40.0% | |
| ATTCATGCTGTCATTAGCGT+CGG | - | chr8_4:24138667-24138686 | Msa1319990:intron | 40.0% | |
| ! | GTCCAGAAGGTGTAATTGAT+CGG | - | chr8_4:24138692-24138711 | Msa1319990:intron | 40.0% |
| AGTGCTAAAGGGCTTCATTA+AGG | + | chr8_4:24138821-24138840 | None:intergenic | 40.0% | |
| TTAATGAAGCCCTTTAGCAC+TGG | - | chr8_4:24138820-24138839 | Msa1319990:intron | 40.0% | |
| ACCTGCAGTTTGTAAGAAAC+GGG | + | chr8_4:24139184-24139203 | None:intergenic | 40.0% | |
| GTGAAAAGAACCTCACGTTT+GGG | + | chr8_4:24139267-24139286 | None:intergenic | 40.0% | |
| !! | GTCACTAGACCAGCTTTATT+AGG | + | chr8_4:24139547-24139566 | None:intergenic | 40.0% |
| !! | GAGTCATGTTGACTCCAAAA+TGG | + | chr8_4:24138376-24138395 | None:intergenic | 40.0% |
| ! | TCGATGTTTTCCATCATCTG+TGG | - | chr8_4:24138431-24138450 | Msa1319990:intron | 40.0% |
| ! | ATGTTTTCCATCATCTGTGG+TGG | - | chr8_4:24138434-24138453 | Msa1319990:intron | 40.0% |
| CAGGTATATAAACCTGACTC+AGG | - | chr8_4:24138564-24138583 | Msa1319990:CDS | 40.0% | |
| AATGACAGCATGAATGACCA+TGG | + | chr8_4:24138662-24138681 | None:intergenic | 40.0% | |
| ATTCATGCTGTCATTAGCGT+CGG | - | chr8_4:24138667-24138686 | Msa1319990:intron | 40.0% | |
| ! | GTCCAGAAGGTGTAATTGAT+CGG | - | chr8_4:24138692-24138711 | Msa1319990:intron | 40.0% |
| AGTGCTAAAGGGCTTCATTA+AGG | + | chr8_4:24138821-24138840 | None:intergenic | 40.0% | |
| TTAATGAAGCCCTTTAGCAC+TGG | - | chr8_4:24138820-24138839 | Msa1319990:intron | 40.0% | |
| ACCTGCAGTTTGTAAGAAAC+GGG | + | chr8_4:24139184-24139203 | None:intergenic | 40.0% | |
| GTGAAAAGAACCTCACGTTT+GGG | + | chr8_4:24139267-24139286 | None:intergenic | 40.0% | |
| !! | GTCACTAGACCAGCTTTATT+AGG | + | chr8_4:24139547-24139566 | None:intergenic | 40.0% |
| CTTGTAAAGCTACATCAGCG+AGG | - | chr8_4:24138036-24138055 | Msa1319990:three_prime_UTR | 45.0% | |
| AGCTAGGAAACTAGAGATGG+TGG | + | chr8_4:24138473-24138492 | None:intergenic | 45.0% | |
| TTCATGCTGTCATTAGCGTC+GGG | - | chr8_4:24138668-24138687 | Msa1319990:intron | 45.0% | |
| CTCCGATCAATTACACCTTC+TGG | + | chr8_4:24138697-24138716 | None:intergenic | 45.0% | |
| TCAATAGTGGCGAGAGAGTA+AGG | + | chr8_4:24138760-24138779 | None:intergenic | 45.0% | |
| TCTCTCGCCACTATTGAGAA+TGG | - | chr8_4:24138763-24138782 | Msa1319990:intron | 45.0% | |
| CGCTTATCTCCAGTGCTAAA+GGG | + | chr8_4:24138832-24138851 | None:intergenic | 45.0% | |
| ! | CCTTTAGCACTGGAGATAAG+CGG | - | chr8_4:24138830-24138849 | Msa1319990:intron | 45.0% |
| ACCCGTTTCTTACAAACTGC+AGG | - | chr8_4:24139180-24139199 | Msa1319990:CDS | 45.0% | |
| CAAAATCTAGCCCAAACGTG+AGG | - | chr8_4:24139254-24139273 | Msa1319990:intron | 45.0% | |
| GGTGAAAAGAACCTCACGTT+TGG | + | chr8_4:24139268-24139287 | None:intergenic | 45.0% | |
| GATGGACAGTTCTCTTCTCT+AGG | + | chr8_4:24139360-24139379 | None:intergenic | 45.0% | |
| ! | TGCAGGTTCAGTGGTGATTT+TGG | - | chr8_4:24139478-24139497 | Msa1319990:intron | 45.0% |
| CTTGTAAAGCTACATCAGCG+AGG | - | chr8_4:24138036-24138055 | Msa1319990:three_prime_UTR | 45.0% | |
| AGCTAGGAAACTAGAGATGG+TGG | + | chr8_4:24138473-24138492 | None:intergenic | 45.0% | |
| TTCATGCTGTCATTAGCGTC+GGG | - | chr8_4:24138668-24138687 | Msa1319990:intron | 45.0% | |
| CTCCGATCAATTACACCTTC+TGG | + | chr8_4:24138697-24138716 | None:intergenic | 45.0% | |
| TCAATAGTGGCGAGAGAGTA+AGG | + | chr8_4:24138760-24138779 | None:intergenic | 45.0% | |
| TCTCTCGCCACTATTGAGAA+TGG | - | chr8_4:24138763-24138782 | Msa1319990:intron | 45.0% | |
| CGCTTATCTCCAGTGCTAAA+GGG | + | chr8_4:24138832-24138851 | None:intergenic | 45.0% | |
| ! | CCTTTAGCACTGGAGATAAG+CGG | - | chr8_4:24138830-24138849 | Msa1319990:intron | 45.0% |
| ACCCGTTTCTTACAAACTGC+AGG | - | chr8_4:24139180-24139199 | Msa1319990:CDS | 45.0% | |
| CAAAATCTAGCCCAAACGTG+AGG | - | chr8_4:24139254-24139273 | Msa1319990:intron | 45.0% | |
| GGTGAAAAGAACCTCACGTT+TGG | + | chr8_4:24139268-24139287 | None:intergenic | 45.0% | |
| GATGGACAGTTCTCTTCTCT+AGG | + | chr8_4:24139360-24139379 | None:intergenic | 45.0% | |
| ! | TGCAGGTTCAGTGGTGATTT+TGG | - | chr8_4:24139478-24139497 | Msa1319990:intron | 45.0% |
| CTCTGCTGCAATCAGTCATC+AGG | - | chr8_4:24138142-24138161 | Msa1319990:three_prime_UTR | 50.0% | |
| TAGGAAGCCACCACAGATGA+TGG | + | chr8_4:24138444-24138463 | None:intergenic | 50.0% | |
| TCATCTGTGGTGGCTTCCTA+TGG | - | chr8_4:24138444-24138463 | Msa1319990:CDS | 50.0% | |
| !! | CTAGAGATGGTGGATGCCAT+AGG | + | chr8_4:24138463-24138482 | None:intergenic | 50.0% |
| CCGCTTATCTCCAGTGCTAA+AGG | + | chr8_4:24138833-24138852 | None:intergenic | 50.0% | |
| TCTTGAGTAGTGGCAGCCAA+AGG | - | chr8_4:24139631-24139650 | Msa1319990:intron | 50.0% | |
| CTCTGCTGCAATCAGTCATC+AGG | - | chr8_4:24138142-24138161 | Msa1319990:three_prime_UTR | 50.0% | |
| TAGGAAGCCACCACAGATGA+TGG | + | chr8_4:24138444-24138463 | None:intergenic | 50.0% | |
| TCATCTGTGGTGGCTTCCTA+TGG | - | chr8_4:24138444-24138463 | Msa1319990:CDS | 50.0% | |
| !! | CTAGAGATGGTGGATGCCAT+AGG | + | chr8_4:24138463-24138482 | None:intergenic | 50.0% |
| CCGCTTATCTCCAGTGCTAA+AGG | + | chr8_4:24138833-24138852 | None:intergenic | 50.0% | |
| TCTTGAGTAGTGGCAGCCAA+AGG | - | chr8_4:24139631-24139650 | Msa1319990:intron | 50.0% | |
| ! | ATTAGCGTCGGGAGTCCAGA+AGG | - | chr8_4:24138679-24138698 | Msa1319990:intron | 55.0% |
| CACTGGAGATAAGCGGCTTG+AGG | - | chr8_4:24138837-24138856 | Msa1319990:intron | 55.0% | |
| AGAGAACTGTCCATCTCGCG+CGG | - | chr8_4:24139365-24139384 | Msa1319990:intron | 55.0% | |
| ACTTGAACATCCGCGCGAGA+TGG | + | chr8_4:24139378-24139397 | None:intergenic | 55.0% | |
| ATCTCGCGCGGATGTTCAAG+TGG | - | chr8_4:24139377-24139396 | Msa1319990:intron | 55.0% | |
| ! | ATTAGCGTCGGGAGTCCAGA+AGG | - | chr8_4:24138679-24138698 | Msa1319990:intron | 55.0% |
| CACTGGAGATAAGCGGCTTG+AGG | - | chr8_4:24138837-24138856 | Msa1319990:intron | 55.0% | |
| AGAGAACTGTCCATCTCGCG+CGG | - | chr8_4:24139365-24139384 | Msa1319990:intron | 55.0% | |
| ACTTGAACATCCGCGCGAGA+TGG | + | chr8_4:24139378-24139397 | None:intergenic | 55.0% | |
| ATCTCGCGCGGATGTTCAAG+TGG | - | chr8_4:24139377-24139396 | Msa1319990:intron | 55.0% | |
| CTCGCTGCAGATCCTGAGTC+AGG | + | chr8_4:24138579-24138598 | None:intergenic | 60.0% | |
| CTCGCTGCAGATCCTGAGTC+AGG | + | chr8_4:24138579-24138598 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 24138032 | 24139803 | 24138032 | ID=Msa1319990;Name=Msa1319990 |
| chr8_4 | mRNA | 24138032 | 24139803 | 24138032 | ID=Msa1319990-mRNA-1;Parent=Msa1319990;Name=Msa1319990-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.66|0.5|0.75|1|1|4|167|223 |
| chr8_4 | exon | 24138032 | 24138352 | 24138032 | ID=Msa1319990-mRNA-1:exon:8325;Parent=Msa1319990-mRNA-1 |
| chr8_4 | exon | 24138437 | 24138633 | 24138437 | ID=Msa1319990-mRNA-1:exon:8324;Parent=Msa1319990-mRNA-1 |
| chr8_4 | exon | 24138977 | 24139268 | 24138977 | ID=Msa1319990-mRNA-1:exon:8323;Parent=Msa1319990-mRNA-1 |
| chr8_4 | exon | 24139775 | 24139803 | 24139775 | ID=Msa1319990-mRNA-1:exon:8322;Parent=Msa1319990-mRNA-1 |
| chr8_4 | CDS | 24139775 | 24139803 | 24139775 | ID=Msa1319990-mRNA-1:cds;Parent=Msa1319990-mRNA-1 |
| chr8_4 | CDS | 24138977 | 24139268 | 24138977 | ID=Msa1319990-mRNA-1:cds;Parent=Msa1319990-mRNA-1 |
| chr8_4 | CDS | 24138437 | 24138633 | 24138437 | ID=Msa1319990-mRNA-1:cds;Parent=Msa1319990-mRNA-1 |
| chr8_4 | CDS | 24138199 | 24138352 | 24138199 | ID=Msa1319990-mRNA-1:cds;Parent=Msa1319990-mRNA-1 |
| chr8_4 | three_prime_UTR | 24138032 | 24138198 | 24138032 | ID=Msa1319990-mRNA-1:three_prime_utr;Parent=Msa1319990-mRNA-1 |
| Gene Sequence |
| Protein sequence |
