AlfalfaGEDB | Msa1320360

M. sativa cultivar zhongmu-4 / Msa1320360

KEGG: -
GO: -
PFAM: PF14226.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1320360	A0A396GFX6	96.623	385	10	1	1	382	5	389	0.0	766

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0382680	Msa1320360	0.814774	1.298004e-51	-8.615850e-47
Msa0416460	Msa1320360	0.813454	2.539054e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1320360	MtrunA17_Chr8g0351771	96.623	385	10	1	1	382	5	389	0.0	766

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1320360	AT5G48020.1	76.705	352	82	0	31	382	1	352	0.0	567

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Find 102 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAAACTATGGATTCCTG+GGG	0.696839	8_4:-24806158	Msa1320360:CDS
AAATACCCTCCAATGTGTGC+AGG	0.553860	8_4:-24804230	Msa1320360:CDS
AACCTGAAATTTGGTGTTAG+AGG	0.373948	8_4:+24807143	None:intergenic
AAGTGCTCCGGTTTCACTTA+AGG	0.356592	8_4:+24807615	None:intergenic
AATGCAAATGAGATCTCTCT+TGG	0.518231	8_4:+24807497	None:intergenic
AATGCAGATAGAGTGGTTAA+CGG	0.526453	8_4:-24804553	Msa1320360:intron
ACATATTCTCCTGCACACAT+TGG	0.557119	8_4:+24804221	None:intergenic
ACCTGAAATTTGGTGTTAGA+GGG	0.544097	8_4:+24807144	None:intergenic
ACGAAGTAGTTGCCACAAAC+AGG	0.452864	8_4:-24804506	Msa1320360:CDS
ACGGGAGGGGACTGCATAGC+TGG	0.474833	8_4:-24804534	Msa1320360:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCATTAATAGAAAATGTGTG+AGG	+	chr8_4:24804020-24804039	None:intergenic	30.0%
ATGAAGATAGATCTATCACT+GGG	+	chr8_4:24804148-24804167	None:intergenic	30.0%
TATGAAGATAGATCTATCAC+TGG	+	chr8_4:24804149-24804168	None:intergenic	30.0%
TGATCGTTTCATTGATATGA+TGG	-	chr8_4:24804292-24804311	Msa1320360:CDS	30.0%
TACTAACTTCATGACTAACT+AGG	+	chr8_4:24804780-24804799	None:intergenic	30.0%
AAAGTCTGATCAAGAATTGT+TGG	-	chr8_4:24804799-24804818	Msa1320360:intron	30.0%
TACACAAGAATCATTCATTC+AGG	+	chr8_4:24804843-24804862	None:intergenic	30.0%
AGTTGATCTCGCAAAATAAT+TGG	+	chr8_4:24804926-24804945	None:intergenic	30.0%
TCAATCTATGAGACATCTAA+GGG	-	chr8_4:24805020-24805039	Msa1320360:CDS	30.0%
GTCAAACACTTCAATTAGTA+CGG	+	chr8_4:24805232-24805251	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	24803941	24807930	24803941	ID=Msa1320360;Name=Msa1320360
chr8_4	mRNA	24803941	24807930	24803941	ID=Msa1320360-mRNA-1;Parent=Msa1320360;Name=Msa1320360-mRNA-1;_AED=0.04;_eAED=0.04;_QI=106\|1\|1\|1\|1\|1\|7\|237\|382
chr8_4	exon	24803941	24804324	24803941	ID=Msa1320360-mRNA-1:exon:8523;Parent=Msa1320360-mRNA-1
chr8_4	exon	24804443	24804568	24804443	ID=Msa1320360-mRNA-1:exon:8522;Parent=Msa1320360-mRNA-1
chr8_4	exon	24804964	24805170	24804964	ID=Msa1320360-mRNA-1:exon:8521;Parent=Msa1320360-mRNA-1
chr8_4	exon	24805953	24806021	24805953	ID=Msa1320360-mRNA-1:exon:8520;Parent=Msa1320360-mRNA-1
chr8_4	exon	24806133	24806225	24806133	ID=Msa1320360-mRNA-1:exon:8519;Parent=Msa1320360-mRNA-1
chr8_4	exon	24807146	24807319	24807146	ID=Msa1320360-mRNA-1:exon:8518;Parent=Msa1320360-mRNA-1
chr8_4	exon	24807492	24807930	24807492	ID=Msa1320360-mRNA-1:exon:8517;Parent=Msa1320360-mRNA-1
chr8_4	five_prime_UTR	24807825	24807930	24807825	ID=Msa1320360-mRNA-1:five_prime_utr;Parent=Msa1320360-mRNA-1
chr8_4	CDS	24807492	24807824	24807492	ID=Msa1320360-mRNA-1:cds;Parent=Msa1320360-mRNA-1
chr8_4	CDS	24807146	24807319	24807146	ID=Msa1320360-mRNA-1:cds;Parent=Msa1320360-mRNA-1
chr8_4	CDS	24806133	24806225	24806133	ID=Msa1320360-mRNA-1:cds;Parent=Msa1320360-mRNA-1
chr8_4	CDS	24805953	24806021	24805953	ID=Msa1320360-mRNA-1:cds;Parent=Msa1320360-mRNA-1
chr8_4	CDS	24804964	24805170	24804964	ID=Msa1320360-mRNA-1:cds;Parent=Msa1320360-mRNA-1
chr8_4	CDS	24804443	24804568	24804443	ID=Msa1320360-mRNA-1:cds;Parent=Msa1320360-mRNA-1
chr8_4	CDS	24804178	24804324	24804178	ID=Msa1320360-mRNA-1:cds;Parent=Msa1320360-mRNA-1
chr8_4	three_prime_UTR	24803941	24804177	24803941	ID=Msa1320360-mRNA-1:three_prime_utr;Parent=Msa1320360-mRNA-1

Gene Sequence

>Msa1320360

ATGCGTGTGCGTGCGTCTCACCATATTATAAAACCGATCCATATTACCCAAAAAACCCTTCCTTCACTCATTCTCCCGCCATCAACAACAATGGAACTCCCAGTGATAGATCTATCTTCATACCTCTCCGCCGTTTCAAACGACCGCGATCCACGCCTTCAATCTCTCTGCGCCGATGTCAGCCGCACCTTAAGTGAAACCGGAGCACTTCTTGTAAAAGATCCACGATGCACCGTCGAAGATAATGATCGTTTCATTGATATGATGGAAAAGTACTTCTCAGCTCCTCATGAGTTCAAGATTCGCCAAGAGAGATCTCATTTGCATTACCAGGTTGGGGTTACGCCGGAGAGAGTGGAAGTACCGAGAAGTTTGGTGGATGAAGAAATGCAAGAGAAAGTGAAAGAAATGCCGGAAGAACATCGACCTCATACTCCTGTTGGTGCTGATCTTAAATGGAGATATTTTTGGAGGATCGGTGATCGTCCCTCTAACACCAAATTTCAGGAACTCAATGCAGAGCCAGTAATTCCCGAAGGTTTTCCAGAATGGAAAGAAACTATGGATTCCTGGGGATACAAAATGATAGCAGCAATTGAAGTGGTTGCTGAAATGGCAGCTATTGGGTTTGGTCTTCCAAAGGACGCATTTACATCTCTTATGAAGCTGGGCCCGCATCTGCTAGCTCCAACAGGGAGTGACCTTGAAAAATATGGTCAAGTAGGAACTGTTTTTGCAGGATATCACTATGATCTTAACTTTCTAACAATTCATGGTAGAAGTAGATTTCCTGGATTGAACATCTGGCTAAGAAATGGACAAAAAGTCGAAGTGAAGGTTCCAGTAGGTTGTCTTCTTATTCAGACAGGAAAGCAGATAGAGTGGTTAACGGGAGGGGACTGCATAGCTGGCATGCACGAAGTAGTTGCCACAAACAGGACCATTGATGCAATCAATGCAGCTAAAGAGCAAAAAAGAAGCTTATGGAGAGTCTCGTCGACGTTATTTGCGCACATAGCATCAGATGCGGTTCTGAAGCCCTTGGGACATTTTGCCGAATCGCCACTGGCAAGCAAATACCCTCCAATGTGTGCAGGAGAATATGTTGAACAAGAGCTTTCTGTAATCAATCTCAAGGGAAAGAAATGA

Protein sequence

>Msa1320360

MRVRASHHIIKPIHITQKTLPSLILPPSTTMELPVIDLSSYLSAVSNDRDPRLQSLCADVSRTLSETGALLVKDPRCTVEDNDRFIDMMEKYFSAPHEFKIRQERSHLHYQVGVTPERVEVPRSLVDEEMQEKVKEMPEEHRPHTPVGADLKWRYFWRIGDRPSNTKFQELNAEPVIPEGFPEWKETMDSWGYKMIAAIEVVAEMAAIGFGLPKDAFTSLMKLGPHLLAPTGSDLEKYGQVGTVFAGYHYDLNFLTIHGRSRFPGLNIWLRNGQKVEVKVPVGCLLIQTGKQIEWLTGGDCIAGMHEVVATNRTIDAINAAKEQKRSLWRVSSTLFAHIASDAVLKPLGHFAESPLASKYPPMCAGEYVEQELSVINLKGKK*