AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1320360


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1320360 MtrunA17_Chr8g0351771 96.623 385 10 1 1 382 5 389 0.0 766
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1320360 AT5G48020.1 76.705 352 82 0 31 382 1 352 0.0 567

Find 102 sgRNAs with CRISPR-Local

Find 234 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTGACATTTGATATAAAT+TGG 0.160904 8_4:+24803981 None:intergenic
TCCCTCTAACACCAAATTTC+AGG 0.195500 8_4:-24807145 Msa1320360:intron
TTTCTGCATGTTAGTGTTAC+AGG 0.207496 8_4:-24803949 Msa1320360:three_prime_UTR
TCCATAGTTTCTTTCCATTC+TGG 0.228050 8_4:+24806167 None:intergenic
GGAAAACCTTCGGGAATTAC+TGG 0.268952 8_4:+24806188 None:intergenic
CTGTTGGTGCTGATCTTAAA+TGG 0.294521 8_4:-24807194 Msa1320360:CDS
CTTAACTTTCTAACAATTCA+TGG 0.312683 8_4:-24805064 Msa1320360:CDS
CATGGTAGAAGTAGATTTCC+TGG 0.325103 8_4:-24805046 Msa1320360:CDS
TTCCATTCTGGAAAACCTTC+GGG 0.337961 8_4:+24806179 None:intergenic
TTTGATATAAATTGGAGTTC+AGG 0.338133 8_4:+24803989 None:intergenic
AGCTGCATTGATTGCATCAA+TGG 0.338784 8_4:+24804482 None:intergenic
TACATAGGTGGTTGCTGAAA+TGG 0.348701 8_4:-24806006 Msa1320360:intron
GTTGCTGAAATGGCAGCTAT+TGG 0.355888 8_4:-24805996 Msa1320360:CDS
AAGTGCTCCGGTTTCACTTA+AGG 0.356592 8_4:+24807615 None:intergenic
GGAAAGAAACTATGGATTCC+TGG 0.357071 8_4:-24806160 Msa1320360:CDS
GGGAGTTCCATTGTTGTTGA+TGG 0.361332 8_4:+24807724 None:intergenic
TCCAGAATGGAAAGAAACTA+TGG 0.362810 8_4:-24806168 Msa1320360:CDS
CCGCATCTGCTAGCTCCAAC+AGG 0.366336 8_4:-24805145 Msa1320360:CDS
GAAAGAAATGAGAACTTTCA+TGG 0.367374 8_4:-24804166 Msa1320360:exon
AACCTGAAATTTGGTGTTAG+AGG 0.373948 8_4:+24807143 None:intergenic
TTTCCATTCTGGAAAACCTT+CGG 0.382603 8_4:+24806178 None:intergenic
GATTTCCTGGATTGAACATC+TGG 0.385430 8_4:-24805033 Msa1320360:CDS
TCTTCATCCACCAAACTTCT+CGG 0.398610 8_4:+24807267 None:intergenic
TGATCGTTTCATTGATATGA+TGG 0.405471 8_4:-24807557 Msa1320360:CDS
GTATGAGGTCGATGTTCTTC+CGG 0.410370 8_4:+24807219 None:intergenic
TTCATGTTTGTTCCAAGAAA+AGG 0.412795 8_4:-24804030 Msa1320360:three_prime_UTR
GAAATGGCAGCTATTGGGTT+TGG 0.417350 8_4:-24805990 Msa1320360:CDS
TTGAACATCTGGCTAAGAAA+TGG 0.428381 8_4:-24805022 Msa1320360:CDS
AGAGATGTAAATGCGTCCTT+TGG 0.431382 8_4:+24805963 None:intergenic
TTTGCTTGCCAGTGGCGATT+CGG 0.436293 8_4:+24804250 None:intergenic
TTGCTGAAATGGCAGCTATT+GGG 0.439102 8_4:-24805995 Msa1320360:CDS
AGTGGAAGTACCGAGAAGTT+TGG 0.442306 8_4:-24807277 Msa1320360:CDS
ACGAAGTAGTTGCCACAAAC+AGG 0.452864 8_4:-24804506 Msa1320360:CDS
GAAAGAAACTATGGATTCCT+GGG 0.462274 8_4:-24806159 Msa1320360:CDS
GAGATCTCATTTGCATTACC+AGG 0.471421 8_4:-24807491 Msa1320360:intron
ACGGGAGGGGACTGCATAGC+TGG 0.474833 8_4:-24804534 Msa1320360:CDS
AGCCGCACCTTAAGTGAAAC+CGG 0.475604 8_4:-24807622 Msa1320360:CDS
CATTTAAGATCAGCACCAAC+AGG 0.478310 8_4:+24807195 None:intergenic
GATAGAGTGGTTAACGGGAG+GGG 0.481108 8_4:-24804547 Msa1320360:CDS
ATTTACATCTCTTATGAAGC+TGG 0.483911 8_4:-24805952 Msa1320360:intron
GGTTGTCTTCTTATTCAGAC+AGG 0.484812 8_4:-24804971 Msa1320360:CDS
ATGCAGATAGAGTGGTTAAC+GGG 0.491844 8_4:-24804552 Msa1320360:intron
TGCATCAATGGTCCTGTTTG+TGG 0.493169 8_4:+24804494 None:intergenic
CTTAGCCAGATGTTCAATCC+AGG 0.494189 8_4:+24805028 None:intergenic
GCGGGAGAATGAGTGAAGGA+AGG 0.505983 8_4:+24807746 None:intergenic
ACTTAAGGTGCGGCTGACAT+CGG 0.510359 8_4:+24807630 None:intergenic
CCTGTTGGAGCTAGCAGATG+CGG 0.513776 8_4:+24805145 None:intergenic
GTTCCATTGTTGTTGATGGC+GGG 0.513898 8_4:+24807728 None:intergenic
CTGTTGGAGCTAGCAGATGC+GGG 0.518133 8_4:+24805146 None:intergenic
AATGCAAATGAGATCTCTCT+TGG 0.518231 8_4:+24807497 None:intergenic
TGAATAAGAAGACAACCTAC+TGG 0.518320 8_4:+24804977 None:intergenic
GATGCGGTTCTGAAGCCCTT+GGG 0.519746 8_4:-24804281 Msa1320360:CDS
TGGATCGCGGTCGTTTGAAA+CGG 0.520488 8_4:+24807672 None:intergenic
AATGCAGATAGAGTGGTTAA+CGG 0.526453 8_4:-24804553 Msa1320360:intron
TCTTATTCAGACAGGAAAGC+AGG 0.527797 8_4:-24804963 Msa1320360:intron
TATGAAGATAGATCTATCAC+TGG 0.532690 8_4:+24807703 None:intergenic
TATTCTCCTGCACACATTGG+AGG 0.534371 8_4:+24804224 None:intergenic
GCTTTCTGTAATCAATCTCA+AGG 0.543658 8_4:-24804189 Msa1320360:CDS
ACCTGAAATTTGGTGTTAGA+GGG 0.544097 8_4:+24807144 None:intergenic
AAATACCCTCCAATGTGTGC+AGG 0.553860 8_4:-24804230 Msa1320360:CDS
TGGGGTTACGCCGGAGAGAG+TGG 0.554888 8_4:-24807295 Msa1320360:CDS
AGATGCGGTTCTGAAGCCCT+TGG 0.555896 8_4:-24804282 Msa1320360:CDS
CATCGGCGCAGAGAGATTGA+AGG 0.556433 8_4:+24807647 None:intergenic
ACATATTCTCCTGCACACAT+TGG 0.557119 8_4:+24804221 None:intergenic
GGAAGTACCGAGAAGTTTGG+TGG 0.563059 8_4:-24807274 Msa1320360:CDS
GGAGGGTATTTGCTTGCCAG+TGG 0.565381 8_4:+24804242 None:intergenic
CGGGAGAATGAGTGAAGGAA+GGG 0.567306 8_4:+24807747 None:intergenic
CTCGGTACTTCCACTCTCTC+CGG 0.569660 8_4:+24807285 None:intergenic
GTTTCAAAATGCAGATAGAG+TGG 0.571025 8_4:-24804560 Msa1320360:intron
GTTACAGCTCATCATCGTTA+CGG 0.573162 8_4:+24807862 None:intergenic
AGAGAAAGTGAAAGAAATGC+CGG 0.573901 8_4:-24807238 Msa1320360:CDS
TATTGGGTTTGGTCTTCCAA+AGG 0.574185 8_4:-24805979 Msa1320360:CDS
GATATAAATTGGAGTTCAGG+TGG 0.575525 8_4:+24803992 None:intergenic
TCAGCACCAACAGGAGTATG+AGG 0.576196 8_4:+24807204 None:intergenic
CATCGACCTCATACTCCTGT+TGG 0.579196 8_4:-24807210 Msa1320360:CDS
AGTTCCATTGTTGTTGATGG+CGG 0.583888 8_4:+24807727 None:intergenic
CGCATCTGCTAGCTCCAACA+GGG 0.584453 8_4:-24805144 Msa1320360:CDS
ATTCTCCTGCACACATTGGA+GGG 0.595895 8_4:+24804225 None:intergenic
GATGTAGGTTGGGGTTACGC+CGG 0.596438 8_4:-24807304 Msa1320360:intron
GCGCAGAGAGATTGAAGGCG+TGG 0.597113 8_4:+24807652 None:intergenic
AGATAGAGTGGTTAACGGGA+GGG 0.600235 8_4:-24804548 Msa1320360:CDS
CGATTCGGCAAAATGTCCCA+AGG 0.600431 8_4:+24804265 None:intergenic
TGGCGAATCTTGAACTCATG+AGG 0.601736 8_4:+24807517 None:intergenic
CTCCGGTTTCACTTAAGGTG+CGG 0.607440 8_4:+24807620 None:intergenic
GAGATTGAAGGCGTGGATCG+CGG 0.622964 8_4:+24807659 None:intergenic
CAGATAGAGTGGTTAACGGG+AGG 0.624676 8_4:-24804549 Msa1320360:CDS
ATCGCGGTCGTTTGAAACGG+CGG 0.626601 8_4:+24807675 None:intergenic
TCTCCCGCCATCAACAACAA+TGG 0.634365 8_4:-24807731 Msa1320360:CDS
CTTTCTGTAATCAATCTCAA+GGG 0.642636 8_4:-24804188 Msa1320360:CDS
CTTATGGAGAGTCTCGTCGA+CGG 0.649611 8_4:-24804442 Msa1320360:intron
TGCGCACATAGCATCAGATG+CGG 0.662623 8_4:-24804297 Msa1320360:CDS
GCAGAGCCAGTAATTCCCGA+AGG 0.666440 8_4:-24806194 Msa1320360:CDS
GGTCGTTTGAAACGGCGGAG+AGG 0.666648 8_4:+24807680 None:intergenic
ATGAAGATAGATCTATCACT+GGG 0.672660 8_4:+24807704 None:intergenic
GAAACGATCATTATCTTCGA+CGG 0.676141 8_4:+24807570 None:intergenic
GATTCGGCAAAATGTCCCAA+GGG 0.677886 8_4:+24804266 None:intergenic
CATTAATAGAAAATGTGTGA+GGG 0.683789 8_4:+24807833 None:intergenic
GCATTAATAGAAAATGTGTG+AGG 0.691860 8_4:+24807832 None:intergenic
GATGGCGGGAGAATGAGTGA+AGG 0.695357 8_4:+24807742 None:intergenic
AAAGAAACTATGGATTCCTG+GGG 0.696839 8_4:-24806158 Msa1320360:CDS
GTCGAAGTGAAGGTTCCAGT+AGG 0.704557 8_4:-24804992 Msa1320360:CDS
TTATCTTCGACGGTGCATCG+TGG 0.706648 8_4:+24807580 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATGTTATTTTTTTTTTTTTG+AGG - chr8_4:24805769-24805788 Msa1320360:intron 10.0%
!!! TGTTATTTTTTTTTTTTTGA+GGG - chr8_4:24805770-24805789 Msa1320360:intron 10.0%
!! AAAAATCAATACTTTAACAA+TGG - chr8_4:24804997-24805016 Msa1320360:CDS 15.0%
!!! TTATTTTACAAAAAGTCATT+AGG - chr8_4:24805283-24805302 Msa1320360:intron 15.0%
!!! TTTTTATTTTATCACTTTCT+AGG + chr8_4:24805386-24805405 None:intergenic 15.0%
!!! TATGTTAAAACAAAAGATTT+TGG - chr8_4:24806005-24806024 Msa1320360:intron 15.0%
!! AAATGTAAAAGTAAAGAATA+GGG + chr8_4:24806470-24806489 None:intergenic 15.0%
!! TAAATGTAAAAGTAAAGAAT+AGG + chr8_4:24806471-24806490 None:intergenic 15.0%
!! TATTGACATTTGATATAAAT+TGG + chr8_4:24807871-24807890 None:intergenic 15.0%
!!! ATCTTAAATGGAGATATTTT+TGG - chr8_4:24804667-24804686 Msa1320360:intron 20.0%
!! AAAAAAAGAAACCTGAAATT+TGG + chr8_4:24804718-24804737 None:intergenic 20.0%
!! TGCGATTGTTTATAATTATA+AGG - chr8_4:24805138-24805157 Msa1320360:CDS 20.0%
!!! TTTTTGTATTCTCTCATTTA+CGG - chr8_4:24805163-24805182 Msa1320360:intron 20.0%
!!! AATAGTACAGTTTTTTTGAA+TGG + chr8_4:24805207-24805226 None:intergenic 20.0%
!! AAGTAAGTCATATAATTGAT+TGG - chr8_4:24805737-24805756 Msa1320360:intron 20.0%
!! ACAAATATAATGTTAAACAG+TGG + chr8_4:24806147-24806166 None:intergenic 20.0%
!!! TCAACTTGTTTAAAAAATGT+TGG - chr8_4:24806339-24806358 Msa1320360:intron 20.0%
!!! CAACTTGTTTAAAAAATGTT+GGG - chr8_4:24806340-24806359 Msa1320360:intron 20.0%
!! ATTTATTTATGTTTGTCCAT+AGG - chr8_4:24806486-24806505 Msa1320360:intron 20.0%
!! TTTATTTATGTTTGTCCATA+GGG - chr8_4:24806487-24806506 Msa1320360:intron 20.0%
!! AACATAGGTAAAAATATCAA+GGG + chr8_4:24806644-24806663 None:intergenic 20.0%
!! AAACATAGGTAAAAATATCA+AGG + chr8_4:24806645-24806664 None:intergenic 20.0%
!! GATACAATATCTTCAAATAT+AGG + chr8_4:24806925-24806944 None:intergenic 20.0%
! CATTAATAGAAAATGTGTGA+GGG + chr8_4:24804019-24804038 None:intergenic 25.0%
!!! TATGGATCGGTTTTATAATA+TGG + chr8_4:24804070-24804089 None:intergenic 25.0%
!!! TTAAATGGAGATATTTTTGG+AGG - chr8_4:24804670-24804689 Msa1320360:intron 25.0%
!!! TATGTTGCAGTTACTTTTTT+CGG - chr8_4:24804738-24804757 Msa1320360:intron 25.0%
!!! CATATTCTGCTTATTTTAGA+AGG - chr8_4:24805340-24805359 Msa1320360:intron 25.0%
! AAAATTAGTCGAAAACATTG+AGG - chr8_4:24805402-24805421 Msa1320360:intron 25.0%
! AAATTAGTCGAAAACATTGA+GGG - chr8_4:24805403-24805422 Msa1320360:intron 25.0%
!!! ACTTTTACCCTTTTTCAATA+TGG - chr8_4:24806057-24806076 Msa1320360:intron 25.0%
! TTTGCTTCCATATTGAAAAA+GGG + chr8_4:24806067-24806086 None:intergenic 25.0%
!! ATGCATTTTTATAACCAGAA+TGG - chr8_4:24806187-24806206 Msa1320360:CDS 25.0%
!!! TTAATTACTTTTCCAACTCT+TGG - chr8_4:24806270-24806289 Msa1320360:intron 25.0%
! TCAATAGAATAGTCATCAAA+TGG - chr8_4:24806438-24806457 Msa1320360:intron 25.0%
! CAATAGAATAGTCATCAAAT+GGG - chr8_4:24806439-24806458 Msa1320360:intron 25.0%
! TAAAGTAAAATTGTTCCCTA+TGG + chr8_4:24806505-24806524 None:intergenic 25.0%
! ATACAATCAGTAGAAAACAT+AGG + chr8_4:24806659-24806678 None:intergenic 25.0%
!!! TATGTTTTCTACTGATTGTA+TGG - chr8_4:24806658-24806677 Msa1320360:intron 25.0%
! CTTAACTTTCTAACAATTCA+TGG - chr8_4:24806785-24806804 Msa1320360:intron 25.0%
! CTAAAAAGTTCAGCAAAAAA+TGG + chr8_4:24807064-24807083 None:intergenic 25.0%
!! TTATAATTTTTATCCACCAC+TGG - chr8_4:24807145-24807164 Msa1320360:intron 25.0%
! ACAAAAAGAAAACACACAAA+AGG + chr8_4:24807271-24807290 None:intergenic 25.0%
! GGTCACAATTAAAAATCATT+GGG - chr8_4:24807774-24807793 Msa1320360:CDS 25.0%
! GTCACAATTAAAAATCATTG+GGG - chr8_4:24807775-24807794 Msa1320360:CDS 25.0%
! TTTGATATAAATTGGAGTTC+AGG + chr8_4:24807863-24807882 None:intergenic 25.0%
GCATTAATAGAAAATGTGTG+AGG + chr8_4:24804020-24804039 None:intergenic 30.0%
!!! GTTTTTTGGGTAATATGGAT+CGG + chr8_4:24804083-24804102 None:intergenic 30.0%
ATGAAGATAGATCTATCACT+GGG + chr8_4:24804148-24804167 None:intergenic 30.0%
TATGAAGATAGATCTATCAC+TGG + chr8_4:24804149-24804168 None:intergenic 30.0%
TGATCGTTTCATTGATATGA+TGG - chr8_4:24804292-24804311 Msa1320360:CDS 30.0%
TACTAACTTCATGACTAACT+AGG + chr8_4:24804780-24804799 None:intergenic 30.0%
AAAGTCTGATCAAGAATTGT+TGG - chr8_4:24804799-24804818 Msa1320360:intron 30.0%
TACACAAGAATCATTCATTC+AGG + chr8_4:24804843-24804862 None:intergenic 30.0%
AGTTGATCTCGCAAAATAAT+TGG + chr8_4:24804926-24804945 None:intergenic 30.0%
TCAATCTATGAGACATCTAA+GGG - chr8_4:24805020-24805039 Msa1320360:CDS 30.0%
GTCAAACACTTCAATTAGTA+CGG + chr8_4:24805232-24805251 None:intergenic 30.0%
!!! ATTCTGCTTATTTTAGAAGG+TGG - chr8_4:24805343-24805362 Msa1320360:intron 30.0%
TCAAATAGACATTACGTACT+TGG - chr8_4:24805446-24805465 Msa1320360:intron 30.0%
ATCCTAGAATTTGTGCATTT+CGG + chr8_4:24805497-24805516 None:intergenic 30.0%
GATTTAGATTCCCTGTATAT+GGG + chr8_4:24805521-24805540 None:intergenic 30.0%
AGATTTAGATTCCCTGTATA+TGG + chr8_4:24805522-24805541 None:intergenic 30.0%
! TATTGCTATTGTTATTGTGC+AGG - chr8_4:24805624-24805643 Msa1320360:intron 30.0%
ATTGCGCATATTTCTTACAT+AGG - chr8_4:24805828-24805847 Msa1320360:intron 30.0%
ATTTACATCTCTTATGAAGC+TGG - chr8_4:24805897-24805916 Msa1320360:intron 30.0%
CTTTGCTTCCATATTGAAAA+AGG + chr8_4:24806068-24806087 None:intergenic 30.0%
!!! CTTTTTCAATATGGAAGCAA+AGG - chr8_4:24806066-24806085 Msa1320360:intron 30.0%
TTCTAACAAGTAAACCATTC+TGG + chr8_4:24806204-24806223 None:intergenic 30.0%
!! TGCAGAAATCTCTAAAGTAA+AGG - chr8_4:24806233-24806252 Msa1320360:intron 30.0%
!!! GAGACTTGTTAATTTTGAAC+TGG + chr8_4:24806296-24806315 None:intergenic 30.0%
TGTTATTGAAGTGAGAAAAG+TGG + chr8_4:24806384-24806403 None:intergenic 30.0%
TAATAGAACTTGGCAAAAGA+GGG + chr8_4:24806533-24806552 None:intergenic 30.0%
TATTACCACCTAATAGAACT+TGG + chr8_4:24806543-24806562 None:intergenic 30.0%
!! GTGCATTATTTTGTGTACTA+GGG - chr8_4:24806680-24806699 Msa1320360:intron 30.0%
! CTACTTGACCATATTTTTCA+AGG + chr8_4:24806736-24806755 None:intergenic 30.0%
CTTGAAAAATATGGTCAAGT+AGG - chr8_4:24806734-24806753 Msa1320360:intron 30.0%
GAAAAAAAAGACAAGGAATC+AGG + chr8_4:24806994-24807013 None:intergenic 30.0%
GATGGAAGAAAAAAAAGACA+AGG + chr8_4:24807001-24807020 None:intergenic 30.0%
!!! TGTCATTTTGATTAGACAGA+TGG + chr8_4:24807019-24807038 None:intergenic 30.0%
! TGTTACTTGTCTCAAATAAC+TGG - chr8_4:24807087-24807106 Msa1320360:intron 30.0%
AAGAGCAAAAAAGAAGCTTA+TGG - chr8_4:24807391-24807410 Msa1320360:intron 30.0%
CTTTCTGTAATCAATCTCAA+GGG - chr8_4:24807661-24807680 Msa1320360:CDS 30.0%
GAAAGAAATGAGAACTTTCA+TGG - chr8_4:24807683-24807702 Msa1320360:CDS 30.0%
GGGTCACAATTAAAAATCAT+TGG - chr8_4:24807773-24807792 Msa1320360:CDS 30.0%
TTCATGTTTGTTCCAAGAAA+AGG - chr8_4:24807819-24807838 Msa1320360:exon 30.0%
! CTTATATTGCTTCCTTTTCT+TGG + chr8_4:24807834-24807853 None:intergenic 30.0%
!!! GAAGGGTTTTTTGGGTAATA+TGG + chr8_4:24804088-24804107 None:intergenic 35.0%
!!! ATCTTTTACAAGAAGTGCTC+CGG + chr8_4:24804249-24804268 None:intergenic 35.0%
GAAACGATCATTATCTTCGA+CGG + chr8_4:24804282-24804301 None:intergenic 35.0%
AATGCAAATGAGATCTCTCT+TGG + chr8_4:24804355-24804374 None:intergenic 35.0%
AGTGAAACGATTAATGAACC+TGG + chr8_4:24804379-24804398 None:intergenic 35.0%
ATCATACACTAATTAGCGTC+AGG + chr8_4:24804483-24804502 None:intergenic 35.0%
!! GTTGTTGTTGTTGATGATGT+AGG - chr8_4:24804530-24804549 Msa1320360:CDS 35.0%
!! TTGTTGTTGATGATGTAGGT+TGG - chr8_4:24804534-24804553 Msa1320360:CDS 35.0%
!! TGTTGTTGATGATGTAGGTT+GGG - chr8_4:24804535-24804554 Msa1320360:CDS 35.0%
AGAGAAAGTGAAAGAAATGC+CGG - chr8_4:24804611-24804630 Msa1320360:intron 35.0%
!!! TGGAGATATTTTTGGAGGAT+CGG - chr8_4:24804675-24804694 Msa1320360:intron 35.0%
!! ACCTGAAATTTGGTGTTAGA+GGG + chr8_4:24804708-24804727 None:intergenic 35.0%
!! AACCTGAAATTTGGTGTTAG+AGG + chr8_4:24804709-24804728 None:intergenic 35.0%
AATTGTTGGACGTTGAAATC+AGG - chr8_4:24804813-24804832 Msa1320360:intron 35.0%
GTCAATCTATGAGACATCTA+AGG - chr8_4:24805019-24805038 Msa1320360:CDS 35.0%
!! TCACTTTCTAGGATTGTGAT+TGG + chr8_4:24805375-24805394 None:intergenic 35.0%
!! ATTGAGGGTGTTCAAAAAAG+AGG - chr8_4:24805418-24805437 Msa1320360:intron 35.0%
!! TTGAGGGTGTTCAAAAAAGA+GGG - chr8_4:24805419-24805438 Msa1320360:intron 35.0%
ATGTGAACTGTACAATCAGA+TGG - chr8_4:24805470-24805489 Msa1320360:intron 35.0%
!! ATTCTAGGATTCCCATATAC+AGG - chr8_4:24805507-24805526 Msa1320360:intron 35.0%
!! TTCTAGGATTCCCATATACA+GGG - chr8_4:24805508-24805527 Msa1320360:intron 35.0%
! TTTCCATTCTGGAAAACCTT+CGG + chr8_4:24805674-24805693 None:intergenic 35.0%
TCCAGAATGGAAAGAAACTA+TGG - chr8_4:24805681-24805700 Msa1320360:intron 35.0%
TCCATAGTTTCTTTCCATTC+TGG + chr8_4:24805685-24805704 None:intergenic 35.0%
GAAAGAAACTATGGATTCCT+GGG - chr8_4:24805690-24805709 Msa1320360:intron 35.0%
AAAGAAACTATGGATTCCTG+GGG - chr8_4:24805691-24805710 Msa1320360:intron 35.0%
AAGTAACTGCAACACAAACT+GGG + chr8_4:24806095-24806114 None:intergenic 35.0%
AAAGTAACTGCAACACAAAC+TGG + chr8_4:24806096-24806115 None:intergenic 35.0%
CTAATAGAACTTGGCAAAAG+AGG + chr8_4:24806534-24806553 None:intergenic 35.0%
! CTCTTTTGCCAAGTTCTATT+AGG - chr8_4:24806532-24806551 Msa1320360:intron 35.0%
! TTTTGCCAAGTTCTATTAGG+TGG - chr8_4:24806535-24806554 Msa1320360:intron 35.0%
!! GGTGCATTATTTTGTGTACT+AGG - chr8_4:24806679-24806698 Msa1320360:intron 35.0%
TTGAACATCTGGCTAAGAAA+TGG - chr8_4:24806827-24806846 Msa1320360:intron 35.0%
TGAATAAGAAGACAACCTAC+TGG + chr8_4:24806875-24806894 None:intergenic 35.0%
ATGGAACACAAGTAGAAAAC+TGG + chr8_4:24807045-24807064 None:intergenic 35.0%
GATATTGAAATCAAAGCCAG+TGG + chr8_4:24807164-24807183 None:intergenic 35.0%
!!! ACATATTTTGACAGCTCTCT+AGG - chr8_4:24807213-24807232 Msa1320360:CDS 35.0%
AGAAAACACACAAAAGGAGT+TGG + chr8_4:24807265-24807284 None:intergenic 35.0%
GTTTCAAAATGCAGATAGAG+TGG - chr8_4:24807289-24807308 Msa1320360:CDS 35.0%
AATGCAGATAGAGTGGTTAA+CGG - chr8_4:24807296-24807315 Msa1320360:CDS 35.0%
TAACAGTCGACAGAACTAAA+AGG + chr8_4:24807494-24807513 None:intergenic 35.0%
! CTGTCGACTGTTATACTAAT+TGG - chr8_4:24807501-24807520 Msa1320360:CDS 35.0%
GCTTTCTGTAATCAATCTCA+AGG - chr8_4:24807660-24807679 Msa1320360:CDS 35.0%
!!! TAGACAGCTTTTCTAGCTAT+TGG - chr8_4:24807751-24807770 Msa1320360:CDS 35.0%
!!! AGACAGCTTTTCTAGCTATT+GGG - chr8_4:24807752-24807771 Msa1320360:CDS 35.0%
GGGCAAGAAACTAAAAATTG+TGG - chr8_4:24807795-24807814 Msa1320360:CDS 35.0%
GATATAAATTGGAGTTCAGG+TGG + chr8_4:24807860-24807879 None:intergenic 35.0%
TTTCTGCATGTTAGTGTTAC+AGG - chr8_4:24807900-24807919 Msa1320360:five_prime_UTR 35.0%
GTTACAGCTCATCATCGTTA+CGG + chr8_4:24803990-24804009 None:intergenic 40.0%
!!! GAGTGAAGGAAGGGTTTTTT+GGG + chr8_4:24804096-24804115 None:intergenic 40.0%
!!! TGAGTGAAGGAAGGGTTTTT+TGG + chr8_4:24804097-24804116 None:intergenic 40.0%
! AGTTCCATTGTTGTTGATGG+CGG + chr8_4:24804125-24804144 None:intergenic 40.0%
GAGATCTCATTTGCATTACC+AGG - chr8_4:24804358-24804377 Msa1320360:intron 40.0%
!! GTTGTTGATGATGTAGGTTG+GGG - chr8_4:24804536-24804555 Msa1320360:CDS 40.0%
TCTTCATCCACCAAACTTCT+CGG + chr8_4:24804585-24804604 None:intergenic 40.0%
! CATTTAAGATCAGCACCAAC+AGG + chr8_4:24804657-24804676 None:intergenic 40.0%
!! CTGTTGGTGCTGATCTTAAA+TGG - chr8_4:24804655-24804674 Msa1320360:intron 40.0%
TCCCTCTAACACCAAATTTC+AGG - chr8_4:24804704-24804723 Msa1320360:intron 40.0%
!!! TTTTTTCGGTGTTAACCCTC+TGG - chr8_4:24804752-24804771 Msa1320360:intron 40.0%
ATGACTAACTAGGAACCAGA+GGG + chr8_4:24804770-24804789 None:intergenic 40.0%
GTCCGAAATGCACAAATTCT+AGG - chr8_4:24805492-24805511 Msa1320360:intron 40.0%
! TTCCATTCTGGAAAACCTTC+GGG + chr8_4:24805673-24805692 None:intergenic 40.0%
GGAAAGAAACTATGGATTCC+TGG - chr8_4:24805689-24805708 Msa1320360:intron 40.0%
! TGCTATCATTTTGTATCCCC+AGG + chr8_4:24805710-24805729 None:intergenic 40.0%
GCGCATATTTCTTACATAGG+TGG - chr8_4:24805831-24805850 Msa1320360:intron 40.0%
TACATAGGTGGTTGCTGAAA+TGG - chr8_4:24805843-24805862 Msa1320360:intron 40.0%
TTGCTGAAATGGCAGCTATT+GGG - chr8_4:24805854-24805873 Msa1320360:intron 40.0%
! TATTGGGTTTGGTCTTCCAA+AGG - chr8_4:24805870-24805889 Msa1320360:intron 40.0%
AGAGATGTAAATGCGTCCTT+TGG + chr8_4:24805889-24805908 None:intergenic 40.0%
AGTAACTGCAACACAAACTG+GGG + chr8_4:24806094-24806113 None:intergenic 40.0%
TGCATGAATCTCACTCTTGT+TGG + chr8_4:24806172-24806191 None:intergenic 40.0%
! ATTTTGAACTGGCCAAGAGT+TGG + chr8_4:24806285-24806304 None:intergenic 40.0%
GGGAGTGACCTTGAAAAATA+TGG - chr8_4:24806725-24806744 Msa1320360:intron 40.0%
!!! CAAGTAGGAACTGTTTTTGC+AGG - chr8_4:24806749-24806768 Msa1320360:intron 40.0%
CATGGTAGAAGTAGATTTCC+TGG - chr8_4:24806803-24806822 Msa1320360:intron 40.0%
GATTTCCTGGATTGAACATC+TGG - chr8_4:24806816-24806835 Msa1320360:intron 40.0%
TGGACAAAAAGTCGAAGTGA+AGG - chr8_4:24806847-24806866 Msa1320360:intron 40.0%
GGTTGTCTTCTTATTCAGAC+AGG - chr8_4:24806878-24806897 Msa1320360:intron 40.0%
TCTTATTCAGACAGGAAAGC+AGG - chr8_4:24806886-24806905 Msa1320360:intron 40.0%
ATTGAAATCAAAGCCAGTGG+TGG + chr8_4:24807161-24807180 None:intergenic 40.0%
ATGCAGATAGAGTGGTTAAC+GGG - chr8_4:24807297-24807316 Msa1320360:CDS 40.0%
!! AGCTGCATTGATTGCATCAA+TGG + chr8_4:24807370-24807389 None:intergenic 40.0%
AGCTGGTCGTTTATTGTACT+AGG - chr8_4:24807445-24807464 Msa1320360:intron 40.0%
GCGCAAATAACTACATGTGA+CGG + chr8_4:24807537-24807556 None:intergenic 40.0%
ACATATTCTCCTGCACACAT+TGG + chr8_4:24807631-24807650 None:intergenic 40.0%
!!! GACAGCTTTTCTAGCTATTG+GGG - chr8_4:24807753-24807772 Msa1320360:CDS 40.0%
!! GTTCCATTGTTGTTGATGGC+GGG + chr8_4:24804124-24804143 None:intergenic 45.0%
! GGGAGTTCCATTGTTGTTGA+TGG + chr8_4:24804128-24804147 None:intergenic 45.0%
AAGTGCTCCGGTTTCACTTA+AGG + chr8_4:24804237-24804256 None:intergenic 45.0%
TGGCGAATCTTGAACTCATG+AGG + chr8_4:24804335-24804354 None:intergenic 45.0%
!! AGTGGAAGTACCGAGAAGTT+TGG - chr8_4:24804572-24804591 Msa1320360:intron 45.0%
GTATGAGGTCGATGTTCTTC+CGG + chr8_4:24804633-24804652 None:intergenic 45.0%
CATGACTAACTAGGAACCAG+AGG + chr8_4:24804771-24804790 None:intergenic 45.0%
GGAAAACCTTCGGGAATTAC+TGG + chr8_4:24805664-24805683 None:intergenic 45.0%
! TTCCCGAAGGTTTTCCAGAA+TGG - chr8_4:24805668-24805687 Msa1320360:intron 45.0%
GTTGCTGAAATGGCAGCTAT+TGG - chr8_4:24805853-24805872 Msa1320360:intron 45.0%
GAAATGGCAGCTATTGGGTT+TGG - chr8_4:24805859-24805878 Msa1320360:intron 45.0%
!! TTTTCAAGGTCACTCCCTGT+TGG + chr8_4:24806722-24806741 None:intergenic 45.0%
CTTAGCCAGATGTTCAATCC+AGG + chr8_4:24806824-24806843 None:intergenic 45.0%
CTTGCAGTCTCAACTCTCAA+AGG + chr8_4:24807190-24807209 None:intergenic 45.0%
AGATAGAGTGGTTAACGGGA+GGG - chr8_4:24807301-24807320 Msa1320360:intron 45.0%
ACGAAGTAGTTGCCACAAAC+AGG - chr8_4:24807343-24807362 Msa1320360:intron 45.0%
TGCATCAATGGTCCTGTTTG+TGG + chr8_4:24807358-24807377 None:intergenic 45.0%
GATTCGGCAAAATGTCCCAA+GGG + chr8_4:24807586-24807605 None:intergenic 45.0%
AAATACCCTCCAATGTGTGC+AGG - chr8_4:24807619-24807638 Msa1320360:CDS 45.0%
ATTCTCCTGCACACATTGGA+GGG + chr8_4:24807627-24807646 None:intergenic 45.0%
TATTCTCCTGCACACATTGG+AGG + chr8_4:24807628-24807647 None:intergenic 45.0%
CGGGAGAATGAGTGAAGGAA+GGG + chr8_4:24804105-24804124 None:intergenic 50.0%
TCTCCCGCCATCAACAACAA+TGG - chr8_4:24804118-24804137 Msa1320360:three_prime_UTR 50.0%
TGGATCGCGGTCGTTTGAAA+CGG + chr8_4:24804180-24804199 None:intergenic 50.0%
ACTTAAGGTGCGGCTGACAT+CGG + chr8_4:24804222-24804241 None:intergenic 50.0%
AGCCGCACCTTAAGTGAAAC+CGG - chr8_4:24804227-24804246 Msa1320360:CDS 50.0%
CTCCGGTTTCACTTAAGGTG+CGG + chr8_4:24804232-24804251 None:intergenic 50.0%
TTATCTTCGACGGTGCATCG+TGG + chr8_4:24804272-24804291 None:intergenic 50.0%
!! GGAAGTACCGAGAAGTTTGG+TGG - chr8_4:24804575-24804594 Msa1320360:intron 50.0%
CATCGACCTCATACTCCTGT+TGG - chr8_4:24804639-24804658 Msa1320360:intron 50.0%
! TCAGCACCAACAGGAGTATG+AGG + chr8_4:24804648-24804667 None:intergenic 50.0%
AAGTGGCACCAAATGCTCGA+GGG + chr8_4:24806367-24806386 None:intergenic 50.0%
AAAGTGGCACCAAATGCTCG+AGG + chr8_4:24806368-24806387 None:intergenic 50.0%
GTCGAAGTGAAGGTTCCAGT+AGG - chr8_4:24806857-24806876 Msa1320360:intron 50.0%
CAGATAGAGTGGTTAACGGG+AGG - chr8_4:24807300-24807319 Msa1320360:CDS 50.0%
GATAGAGTGGTTAACGGGAG+GGG - chr8_4:24807302-24807321 Msa1320360:intron 50.0%
CTTATGGAGAGTCTCGTCGA+CGG - chr8_4:24807407-24807426 Msa1320360:intron 50.0%
GGTGAGTGCTCACAAAAAGC+TGG - chr8_4:24807428-24807447 Msa1320360:intron 50.0%
TGCGCACATAGCATCAGATG+CGG - chr8_4:24807552-24807571 Msa1320360:CDS 50.0%
! CGATTCGGCAAAATGTCCCA+AGG + chr8_4:24807587-24807606 None:intergenic 50.0%
! ACATTTTGCCGAATCGCCAC+TGG - chr8_4:24807591-24807610 Msa1320360:CDS 50.0%
TTTGCTTGCCAGTGGCGATT+CGG + chr8_4:24807602-24807621 None:intergenic 50.0%
GCGGGAGAATGAGTGAAGGA+AGG + chr8_4:24804106-24804125 None:intergenic 55.0%
!! GATGGCGGGAGAATGAGTGA+AGG + chr8_4:24804110-24804129 None:intergenic 55.0%
! ATCGCGGTCGTTTGAAACGG+CGG + chr8_4:24804177-24804196 None:intergenic 55.0%
! GAGATTGAAGGCGTGGATCG+CGG + chr8_4:24804193-24804212 None:intergenic 55.0%
CATCGGCGCAGAGAGATTGA+AGG + chr8_4:24804205-24804224 None:intergenic 55.0%
! GATGTAGGTTGGGGTTACGC+CGG - chr8_4:24804545-24804564 Msa1320360:CDS 55.0%
CTCGGTACTTCCACTCTCTC+CGG + chr8_4:24804567-24804586 None:intergenic 55.0%
GCAGAGCCAGTAATTCCCGA+AGG - chr8_4:24805655-24805674 Msa1320360:intron 55.0%
TGTTGGGACCCTCGAGCATT+TGG - chr8_4:24806356-24806375 Msa1320360:intron 55.0%
CTGTTGGAGCTAGCAGATGC+GGG + chr8_4:24806706-24806725 None:intergenic 55.0%
CCTGTTGGAGCTAGCAGATG+CGG + chr8_4:24806707-24806726 None:intergenic 55.0%
CGCATCTGCTAGCTCCAACA+GGG - chr8_4:24806705-24806724 Msa1320360:intron 55.0%
!! AGATGCGGTTCTGAAGCCCT+TGG - chr8_4:24807567-24807586 Msa1320360:CDS 55.0%
!! GATGCGGTTCTGAAGCCCTT+GGG - chr8_4:24807568-24807587 Msa1320360:CDS 55.0%
!! GGAGGGTATTTGCTTGCCAG+TGG + chr8_4:24807610-24807629 None:intergenic 55.0%
! GGTCGTTTGAAACGGCGGAG+AGG + chr8_4:24804172-24804191 None:intergenic 60.0%
GCGCAGAGAGATTGAAGGCG+TGG + chr8_4:24804200-24804219 None:intergenic 60.0%
CCGCATCTGCTAGCTCCAAC+AGG - chr8_4:24806704-24806723 Msa1320360:intron 60.0%
TGGGGTTACGCCGGAGAGAG+TGG - chr8_4:24804554-24804573 Msa1320360:intron 65.0%
ACGGGAGGGGACTGCATAGC+TGG - chr8_4:24807315-24807334 Msa1320360:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 24803941 24807930 24803941 ID=Msa1320360;Name=Msa1320360
chr8_4 mRNA 24803941 24807930 24803941 ID=Msa1320360-mRNA-1;Parent=Msa1320360;Name=Msa1320360-mRNA-1;_AED=0.04;_eAED=0.04;_QI=106|1|1|1|1|1|7|237|382
chr8_4 exon 24803941 24804324 24803941 ID=Msa1320360-mRNA-1:exon:8523;Parent=Msa1320360-mRNA-1
chr8_4 exon 24804443 24804568 24804443 ID=Msa1320360-mRNA-1:exon:8522;Parent=Msa1320360-mRNA-1
chr8_4 exon 24804964 24805170 24804964 ID=Msa1320360-mRNA-1:exon:8521;Parent=Msa1320360-mRNA-1
chr8_4 exon 24805953 24806021 24805953 ID=Msa1320360-mRNA-1:exon:8520;Parent=Msa1320360-mRNA-1
chr8_4 exon 24806133 24806225 24806133 ID=Msa1320360-mRNA-1:exon:8519;Parent=Msa1320360-mRNA-1
chr8_4 exon 24807146 24807319 24807146 ID=Msa1320360-mRNA-1:exon:8518;Parent=Msa1320360-mRNA-1
chr8_4 exon 24807492 24807930 24807492 ID=Msa1320360-mRNA-1:exon:8517;Parent=Msa1320360-mRNA-1
chr8_4 five_prime_UTR 24807825 24807930 24807825 ID=Msa1320360-mRNA-1:five_prime_utr;Parent=Msa1320360-mRNA-1
chr8_4 CDS 24807492 24807824 24807492 ID=Msa1320360-mRNA-1:cds;Parent=Msa1320360-mRNA-1
chr8_4 CDS 24807146 24807319 24807146 ID=Msa1320360-mRNA-1:cds;Parent=Msa1320360-mRNA-1
chr8_4 CDS 24806133 24806225 24806133 ID=Msa1320360-mRNA-1:cds;Parent=Msa1320360-mRNA-1
chr8_4 CDS 24805953 24806021 24805953 ID=Msa1320360-mRNA-1:cds;Parent=Msa1320360-mRNA-1
chr8_4 CDS 24804964 24805170 24804964 ID=Msa1320360-mRNA-1:cds;Parent=Msa1320360-mRNA-1
chr8_4 CDS 24804443 24804568 24804443 ID=Msa1320360-mRNA-1:cds;Parent=Msa1320360-mRNA-1
chr8_4 CDS 24804178 24804324 24804178 ID=Msa1320360-mRNA-1:cds;Parent=Msa1320360-mRNA-1
chr8_4 three_prime_UTR 24803941 24804177 24803941 ID=Msa1320360-mRNA-1:three_prime_utr;Parent=Msa1320360-mRNA-1
Gene Sequence

>Msa1320360

ATGCGTGTGCGTGCGTCTCACCATATTATAAAACCGATCCATATTACCCAAAAAACCCTTCCTTCACTCATTCTCCCGCCATCAACAACAATGGAACTCCCAGTGATAGATCTATCTTCATACCTCTCCGCCGTTTCAAACGACCGCGATCCACGCCTTCAATCTCTCTGCGCCGATGTCAGCCGCACCTTAAGTGAAACCGGAGCACTTCTTGTAAAAGATCCACGATGCACCGTCGAAGATAATGATCGTTTCATTGATATGATGGAAAAGTACTTCTCAGCTCCTCATGAGTTCAAGATTCGCCAAGAGAGATCTCATTTGCATTACCAGGTTGGGGTTACGCCGGAGAGAGTGGAAGTACCGAGAAGTTTGGTGGATGAAGAAATGCAAGAGAAAGTGAAAGAAATGCCGGAAGAACATCGACCTCATACTCCTGTTGGTGCTGATCTTAAATGGAGATATTTTTGGAGGATCGGTGATCGTCCCTCTAACACCAAATTTCAGGAACTCAATGCAGAGCCAGTAATTCCCGAAGGTTTTCCAGAATGGAAAGAAACTATGGATTCCTGGGGATACAAAATGATAGCAGCAATTGAAGTGGTTGCTGAAATGGCAGCTATTGGGTTTGGTCTTCCAAAGGACGCATTTACATCTCTTATGAAGCTGGGCCCGCATCTGCTAGCTCCAACAGGGAGTGACCTTGAAAAATATGGTCAAGTAGGAACTGTTTTTGCAGGATATCACTATGATCTTAACTTTCTAACAATTCATGGTAGAAGTAGATTTCCTGGATTGAACATCTGGCTAAGAAATGGACAAAAAGTCGAAGTGAAGGTTCCAGTAGGTTGTCTTCTTATTCAGACAGGAAAGCAGATAGAGTGGTTAACGGGAGGGGACTGCATAGCTGGCATGCACGAAGTAGTTGCCACAAACAGGACCATTGATGCAATCAATGCAGCTAAAGAGCAAAAAAGAAGCTTATGGAGAGTCTCGTCGACGTTATTTGCGCACATAGCATCAGATGCGGTTCTGAAGCCCTTGGGACATTTTGCCGAATCGCCACTGGCAAGCAAATACCCTCCAATGTGTGCAGGAGAATATGTTGAACAAGAGCTTTCTGTAATCAATCTCAAGGGAAAGAAATGA

Protein sequence

>Msa1320360

MRVRASHHIIKPIHITQKTLPSLILPPSTTMELPVIDLSSYLSAVSNDRDPRLQSLCADVSRTLSETGALLVKDPRCTVEDNDRFIDMMEKYFSAPHEFKIRQERSHLHYQVGVTPERVEVPRSLVDEEMQEKVKEMPEEHRPHTPVGADLKWRYFWRIGDRPSNTKFQELNAEPVIPEGFPEWKETMDSWGYKMIAAIEVVAEMAAIGFGLPKDAFTSLMKLGPHLLAPTGSDLEKYGQVGTVFAGYHYDLNFLTIHGRSRFPGLNIWLRNGQKVEVKVPVGCLLIQTGKQIEWLTGGDCIAGMHEVVATNRTIDAINAAKEQKRSLWRVSSTLFAHIASDAVLKPLGHFAESPLASKYPPMCAGEYVEQELSVINLKGKK*