Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416460 | XP_003600861.1 | 99.676 | 309 | 1 | 0 | 1 | 309 | 1 | 309 | 0.0 | 624 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416460 | sp|O24412|PSD7A_ARATH | 88.961 | 308 | 34 | 0 | 1 | 308 | 1 | 308 | 0.0 | 572 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416460 | G7JB60 | 99.676 | 309 | 1 | 0 | 1 | 309 | 1 | 309 | 0.0 | 624 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0020410 | Msa0416460 | 0.807458 | 5.004844e-50 | -8.615850e-47 |
| Msa0026910 | Msa0416460 | 0.812944 | 3.284675e-51 | -8.615850e-47 |
| Msa0029260 | Msa0416460 | 0.831987 | 1.221896e-55 | -8.615850e-47 |
| Msa0074750 | Msa0416460 | 0.841377 | 4.929767e-58 | -8.615850e-47 |
| Msa0092170 | Msa0416460 | 0.805035 | 1.620866e-49 | -8.615850e-47 |
| Msa0127850 | Msa0416460 | 0.803460 | 3.449397e-49 | -8.615850e-47 |
| Msa0146080 | Msa0416460 | 0.801723 | 7.871550e-49 | -8.615850e-47 |
| Msa0169300 | Msa0416460 | 0.832173 | 1.099689e-55 | -8.615850e-47 |
| Msa0183870 | Msa0416460 | 0.801243 | 9.871791e-49 | -8.615850e-47 |
| Msa0376600 | Msa0416460 | 0.834747 | 2.506537e-56 | -8.615850e-47 |
| Msa0382680 | Msa0416460 | 0.983482 | 7.298724e-158 | -8.615850e-47 |
| Msa0399760 | Msa0416460 | 0.804846 | 1.776008e-49 | -8.615850e-47 |
| Msa0416460 | Msa0560500 | 0.843870 | 1.074032e-58 | -8.615850e-47 |
| Msa0416460 | Msa0614510 | 0.815651 | 8.288207e-52 | -8.615850e-47 |
| Msa0416460 | Msa0618970 | 0.804591 | 2.007059e-49 | -8.615850e-47 |
| Msa0416460 | Msa0697720 | 0.808884 | 2.486996e-50 | -8.615850e-47 |
| Msa0416460 | Msa0726080 | 0.832081 | 1.158786e-55 | -8.615850e-47 |
| Msa0416460 | Msa0797930 | 0.803589 | 3.244195e-49 | -8.615850e-47 |
| Msa0416460 | Msa0831100 | 0.807662 | 4.531224e-50 | -8.615850e-47 |
| Msa0416460 | Msa0846230 | 0.838976 | 2.088453e-57 | -8.615850e-47 |
| Msa0416460 | Msa0944660 | 0.801822 | 7.509943e-49 | -8.615850e-47 |
| Msa0416460 | Msa0970530 | 0.812570 | 3.967488e-51 | -8.615850e-47 |
| Msa0416460 | Msa0970600 | 0.815176 | 1.057021e-51 | -8.615850e-47 |
| Msa0416460 | Msa1063510 | 0.806006 | 1.014412e-49 | -8.615850e-47 |
| Msa0416460 | Msa1089320 | 0.807169 | 5.764867e-50 | -8.615850e-47 |
| Msa0416460 | Msa1320360 | 0.813454 | 2.539054e-51 | -8.615850e-47 |
| Msa0416460 | Msa1330270 | 0.807660 | 4.534016e-50 | -8.615850e-47 |
| Msa0416460 | Msa1364210 | 0.806970 | 6.350006e-50 | -8.615850e-47 |
| Msa0416460 | Msa1369890 | 0.808908 | 2.457852e-50 | -8.615850e-47 |
| Msa0416460 | Msa1407970 | 0.820234 | 7.640773e-53 | -8.615850e-47 |
| Msa0416460 | Msa1454680 | 0.802524 | 5.386501e-49 | -8.615850e-47 |
| Msa0416460 | Msa1458810 | 0.812033 | 5.197376e-51 | -8.615850e-47 |
| Msa0303460 | Msa0416460 | 0.806308 | 8.760023e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416460 | MtrunA17_Chr3g0113191 | 99.676 | 309 | 1 | 0 | 1 | 309 | 1 | 309 | 0.0 | 624 |
| Msa0416460 | MtrunA17_Chr5g0436641 | 95.146 | 309 | 15 | 0 | 1 | 309 | 1 | 309 | 0.0 | 600 |
| Msa0416460 | MtrunA17_Chr3g0113201 | 33.210 | 271 | 164 | 6 | 19 | 285 | 25 | 282 | 2.13e-35 | 129 |
| Msa0416460 | MtrunA17_Chr5g0436671 | 31.206 | 282 | 177 | 6 | 8 | 285 | 10 | 278 | 8.93e-32 | 119 |
| Msa0416460 | MtrunA17_Chr3g0079641 | 25.574 | 305 | 189 | 6 | 10 | 285 | 4 | 299 | 7.68e-23 | 96.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0416460 | AT5G05780.1 | 88.961 | 308 | 34 | 0 | 1 | 308 | 1 | 308 | 0.0 | 572 |
| Msa0416460 | AT3G11270.1 | 88.852 | 305 | 34 | 0 | 1 | 305 | 1 | 305 | 0.0 | 566 |
| Msa0416460 | AT5G05780.2 | 87.987 | 308 | 34 | 1 | 1 | 308 | 1 | 305 | 0.0 | 561 |
| Msa0416460 | AT3G11270.2 | 87.869 | 305 | 34 | 1 | 1 | 305 | 1 | 302 | 0.0 | 554 |
| Msa0416460 | AT2G39990.1 | 28.807 | 243 | 156 | 6 | 10 | 248 | 21 | 250 | 5.11e-26 | 105 |
| Msa0416460 | AT4G26430.1 | 24.606 | 317 | 200 | 7 | 10 | 296 | 4 | 311 | 5.15e-22 | 94.4 |
| Msa0416460 | AT5G56280.1 | 23.885 | 314 | 200 | 7 | 10 | 295 | 4 | 306 | 6.38e-21 | 91.7 |
Find 100 sgRNAs with CRISPR-Local
Find 321 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACCTTGATCTTGTTATTGA+TGG | 0.232829 | 3_2:-63258500 | Msa0416460:CDS |
| GTATAGGATCTCATGGTTTA+AGG | 0.233509 | 3_2:+63258469 | None:intergenic |
| ATTATAACCAAAACGGGATT+TGG | 0.243791 | 3_2:+63259218 | None:intergenic |
| TCCATGTTTAAGAGAATAAA+TGG | 0.261453 | 3_2:-63259694 | Msa0416460:intron |
| AACACGCTTGCGAGTATCTT+TGG | 0.301893 | 3_2:+63261744 | None:intergenic |
| GCTCATGAGGTTGAGGAAAT+AGG | 0.315086 | 3_2:-63258931 | Msa0416460:intron |
| GCACATGCACAAAGACCTTT+TGG | 0.348447 | 3_2:+63258968 | None:intergenic |
| CTATGTTCCAAATCCCGTTT+TGG | 0.360839 | 3_2:-63259225 | Msa0416460:CDS |
| GTTGGAATTCCCAACTCCTT+AGG | 0.364240 | 3_2:+63259185 | None:intergenic |
| CGGTCTTGAGCATTTCTGAT+AGG | 0.370259 | 3_2:-63257690 | Msa0416460:three_prime_UTR |
| TAGATTTCTCTGTTCTTTCT+CGG | 0.370842 | 3_2:+63261885 | None:intergenic |
| CTCGGTTGCAAGGGTGCTAA+TGG | 0.377226 | 3_2:+63258731 | None:intergenic |
| CTGCTCGCGTGTTAACTTGA+TGG | 0.381299 | 3_2:+63257474 | None:intergenic |
| TCTTGCATCCAAACCTTTCA+AGG | 0.385551 | 3_2:+63258541 | None:intergenic |
| ATCCGAACCAGCGTAGCTAT+TGG | 0.391771 | 3_2:+63261675 | None:intergenic |
| ACATCAATTATAACCAAAAC+GGG | 0.396892 | 3_2:+63259212 | None:intergenic |
| GATACTCGCAAGCGTGTTGT+CGG | 0.410026 | 3_2:-63261739 | Msa0416460:CDS |
| AGATCAGAGACATTGAGATT+TGG | 0.417947 | 3_2:+63258198 | None:intergenic |
| ACTCACGGCCTTGAAAGGTT+TGG | 0.421231 | 3_2:-63258549 | Msa0416460:CDS |
| GCGGTGACTGGTTTGGTTAG+TGG | 0.424106 | 3_2:-63261950 | Msa0416460:five_prime_UTR |
| ATGACAAGGACCCTAGCATT+TGG | 0.429351 | 3_2:-63259750 | Msa0416460:CDS |
| GCTGCACTTGGTACTGGTGC+TGG | 0.431498 | 3_2:+63257806 | None:intergenic |
| AACATCAATTATAACCAAAA+CGG | 0.431934 | 3_2:+63259211 | None:intergenic |
| AAATACAGCGGTGACTGGTT+TGG | 0.439247 | 3_2:-63261957 | Msa0416460:five_prime_UTR |
| AGACATTGAGATTTGGTAGC+AGG | 0.443560 | 3_2:+63258205 | None:intergenic |
| TCCTTGTCATCTTCTTCAAA+AGG | 0.445298 | 3_2:+63259763 | None:intergenic |
| GAAAATGACCTCGACATTCA+TGG | 0.450178 | 3_2:-63259547 | Msa0416460:CDS |
| CAGGAGTGGAACACTTGCTC+AGG | 0.452480 | 3_2:-63258770 | Msa0416460:CDS |
| GATGTTGAACCTAAGGAGTT+GGG | 0.454883 | 3_2:-63259194 | Msa0416460:CDS |
| TTGCTTGGTTCTACTTTCAA+AGG | 0.455683 | 3_2:-63261712 | Msa0416460:CDS |
| TAAACTAAGAAAATGATCAT+AGG | 0.457163 | 3_2:+63257585 | None:intergenic |
| TGCAATGGGCTGAGCTCTAA+AGG | 0.466972 | 3_2:-63257764 | Msa0416460:three_prime_UTR |
| AAGAATCTATTATCAACAAA+TGG | 0.468871 | 3_2:-63257552 | Msa0416460:three_prime_UTR |
| GTACCAAGTGCAGCTGCATA+AGG | 0.470014 | 3_2:-63257797 | Msa0416460:exon |
| TGATGTTGAACCTAAGGAGT+TGG | 0.470055 | 3_2:-63259195 | Msa0416460:CDS |
| TATAGGATCTCATGGTTTAA+GGG | 0.477057 | 3_2:+63258470 | None:intergenic |
| TATGCAGCTGCACTTGGTAC+TGG | 0.477744 | 3_2:+63257800 | None:intergenic |
| TATAATTGATGTTGAACCTA+AGG | 0.485322 | 3_2:-63259201 | Msa0416460:CDS |
| AACAAACCTGCAGATGGTAT+AGG | 0.490745 | 3_2:+63258453 | None:intergenic |
| GTGGTGGGGTGGTATAGCAC+TGG | 0.497402 | 3_2:-63259583 | Msa0416460:CDS |
| CTATTATCAACAAATGGATA+AGG | 0.498757 | 3_2:-63257546 | Msa0416460:three_prime_UTR |
| AGGCACTATGATTGATTCCA+TGG | 0.502013 | 3_2:-63257744 | Msa0416460:three_prime_UTR |
| AAGGTTTCGACGATTGCAAT+GGG | 0.503074 | 3_2:-63257778 | Msa0416460:three_prime_UTR |
| AAGCAAAATACAGCGGTGAC+TGG | 0.509604 | 3_2:-63261962 | Msa0416460:five_prime_UTR |
| TTCCATCAATAACAAGATCA+AGG | 0.509830 | 3_2:+63258498 | None:intergenic |
| AAACCTTATGCAGCTGCACT+TGG | 0.510034 | 3_2:+63257794 | None:intergenic |
| CAATGTCTCTGATCTTATCA+AGG | 0.514069 | 3_2:-63258190 | Msa0416460:CDS |
| GGTCTTGAGCATTTCTGATA+GGG | 0.516287 | 3_2:-63257689 | Msa0416460:three_prime_UTR |
| TGCTGTTGAGGAGGTTAAAG+AGG | 0.520637 | 3_2:-63259150 | Msa0416460:intron |
| TGGTCGAGAAACCAAATGCT+AGG | 0.522788 | 3_2:+63259739 | None:intergenic |
| TGCTCAACAAAGAACATGAA+AGG | 0.527873 | 3_2:-63257844 | Msa0416460:CDS |
| CCTTGTTGTTAATCAAGTTG+TGG | 0.533219 | 3_2:+63258009 | None:intergenic |
| ATGCAAGACTTAAAGAGATA+AGG | 0.533289 | 3_2:-63258526 | Msa0416460:CDS |
| GGAAAACTCACGGCCTTGAA+AGG | 0.535505 | 3_2:-63258554 | Msa0416460:CDS |
| ACCATTTATTCTCTTAAACA+TGG | 0.539672 | 3_2:+63259693 | None:intergenic |
| GATCGCTGCTCATGAGGTTG+AGG | 0.541431 | 3_2:-63258938 | Msa0416460:CDS |
| CTATGATTGATTCCATGGAC+CGG | 0.543056 | 3_2:-63257739 | Msa0416460:three_prime_UTR |
| AAAATGACCTCGACATTCAT+GGG | 0.547978 | 3_2:-63259546 | Msa0416460:CDS |
| AATGTAATAATCCCGGTCCA+TGG | 0.548731 | 3_2:+63257727 | None:intergenic |
| TAAGGTTTCGACGATTGCAA+TGG | 0.549840 | 3_2:-63257779 | Msa0416460:three_prime_UTR |
| TGCTACTCAGAAAAGCCAAA+AGG | 0.554388 | 3_2:-63258983 | Msa0416460:CDS |
| GCTCAACAAAGAACATGAAA+GGG | 0.556354 | 3_2:-63257843 | Msa0416460:CDS |
| TTGGTTAGTGGTGTTGCAGA+GGG | 0.558101 | 3_2:-63261938 | Msa0416460:five_prime_UTR |
| TGAGATCCTATACCATCTGC+AGG | 0.565146 | 3_2:-63258459 | Msa0416460:intron |
| TACAGCAAAGGAGCATGTGG+TGG | 0.565219 | 3_2:-63259599 | Msa0416460:intron |
| CAATTAAAATGTAATAATCC+CGG | 0.569283 | 3_2:+63257720 | None:intergenic |
| GATGTTTCCAATAGCTACGC+TGG | 0.569599 | 3_2:-63261682 | Msa0416460:intron |
| TATGATTGATTCCATGGACC+GGG | 0.571204 | 3_2:-63257738 | Msa0416460:three_prime_UTR |
| ACAGCAAAGGAGCATGTGGT+GGG | 0.572446 | 3_2:-63259598 | Msa0416460:intron |
| GCAGATGGTATAGGATCTCA+TGG | 0.574067 | 3_2:+63258462 | None:intergenic |
| AAAAGCATACTATGCTGTTG+AGG | 0.577045 | 3_2:-63259162 | Msa0416460:CDS |
| ACGTTCGATCGAGAAGGTGG+TGG | 0.579416 | 3_2:-63261815 | Msa0416460:CDS |
| ATCACGTTCGATCGAGAAGG+TGG | 0.579469 | 3_2:-63261818 | Msa0416460:CDS |
| CATTAGCACCCTTGCAACCG+AGG | 0.585610 | 3_2:-63258730 | Msa0416460:intron |
| ACACTTGCTCAGGGATGTGA+AGG | 0.595095 | 3_2:-63258760 | Msa0416460:CDS |
| CTCATCACGTTCGATCGAGA+AGG | 0.595224 | 3_2:-63261821 | Msa0416460:CDS |
| CAAAGGAGCATGTGGTGGGG+TGG | 0.599420 | 3_2:-63259594 | Msa0416460:CDS |
| ACATACAGAAATTAAGCGCA+CGG | 0.599520 | 3_2:+63257619 | None:intergenic |
| ATGAGAAACAAACCTGCAGA+TGG | 0.599707 | 3_2:+63258447 | None:intergenic |
| CCACAACTTGATTAACAACA+AGG | 0.604169 | 3_2:-63258009 | Msa0416460:intron |
| TATACTTGCAAACTCAGTAA+CGG | 0.608653 | 3_2:+63257359 | None:intergenic |
| GAAAACGAATGATATGATGC+TGG | 0.610132 | 3_2:-63258072 | Msa0416460:CDS |
| CGCGTGTTAACTTGATGGAA+AGG | 0.611327 | 3_2:+63257479 | None:intergenic |
| TTTGGTTAGTGGTGTTGCAG+AGG | 0.612079 | 3_2:-63261939 | Msa0416460:five_prime_UTR |
| ATCAGAGATCGCTGCTCATG+AGG | 0.616804 | 3_2:-63258944 | Msa0416460:CDS |
| AGCATACTATGCTGTTGAGG+AGG | 0.622035 | 3_2:-63259159 | Msa0416460:CDS |
| ATAGGTGAGCGGAAAACTCA+CGG | 0.624628 | 3_2:-63258564 | Msa0416460:intron |
| CATACAGAAATTAAGCGCAC+GGG | 0.627305 | 3_2:+63257620 | None:intergenic |
| GGTCGAGAAACCAAATGCTA+GGG | 0.629605 | 3_2:+63259740 | None:intergenic |
| TCTAAGCTTCGAATTCGCCA+TGG | 0.637825 | 3_2:-63261866 | Msa0416460:exon |
| GTTTACAGCAAAGGAGCATG+TGG | 0.644927 | 3_2:-63259602 | Msa0416460:intron |
| TAAATAACCCATGAATGTCG+AGG | 0.645744 | 3_2:+63259539 | None:intergenic |
| ACATTGCTTCGTGATAATTG+TGG | 0.656481 | 3_2:+63259719 | None:intergenic |
| CACTTCTAATGAGAGACGAT+AGG | 0.662773 | 3_2:+63258042 | None:intergenic |
| AGGAGTGGAACACTTGCTCA+GGG | 0.663636 | 3_2:-63258769 | Msa0416460:CDS |
| GTAGCTATTGGAAACATCAA+CGG | 0.667938 | 3_2:+63261687 | None:intergenic |
| ACGATGCTGAGCAACACTAG+AGG | 0.680391 | 3_2:+63261787 | None:intergenic |
| GTAGAGAAATACAAGTAACA+TGG | 0.685930 | 3_2:-63257667 | Msa0416460:three_prime_UTR |
| CAGCAAAGGAGCATGTGGTG+GGG | 0.698587 | 3_2:-63259597 | Msa0416460:CDS |
| ACGTTGTGTAGTTAACAATG+AGG | 0.702991 | 3_2:-63257426 | Msa0416460:three_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTAAATTTACAAATATTTTT+GGG | + | chr3_2:63259883-63259902 | None:intergenic | 10.0% |
| !!! | ACTAAATTTACAAATATTTT+TGG | + | chr3_2:63259884-63259903 | None:intergenic | 10.0% |
| !! | AAAAATATTTGTAAATTTAG+TGG | - | chr3_2:63259883-63259902 | Msa0416460:intron | 10.0% |
| !!! | AAGTTTAATAATTTTATCAT+GGG | + | chr3_2:63260210-63260229 | None:intergenic | 10.0% |
| !! | TTAAAAAAAAAAAAAAGTGA+AGG | + | chr3_2:63261929-63261948 | None:intergenic | 10.0% |
| !!! | TCACTTTTTTTTTTTTTTAA+TGG | - | chr3_2:63261929-63261948 | Msa0416460:five_prime_UTR | 10.0% |
| !! | TTTAAATTATTTATGTGAAG+AGG | - | chr3_2:63257806-63257825 | Msa0416460:CDS | 15.0% |
| !!! | TTTTTACATAAAACAAAATC+AGG | + | chr3_2:63257881-63257900 | None:intergenic | 15.0% |
| !! | AAAAAAGAAAATACATTTAC+TGG | + | chr3_2:63258680-63258699 | None:intergenic | 15.0% |
| !!! | GAAGTTTAATAATTTTATCA+TGG | + | chr3_2:63260211-63260230 | None:intergenic | 15.0% |
| !! | AATAAATAAGAATCTGTTTA+AGG | + | chr3_2:63260620-63260639 | None:intergenic | 15.0% |
| !! | AAAAATAAAGCAAAATACAG+CGG | - | chr3_2:63257345-63257364 | Msa0416460:three_prime_UTR | 20.0% |
| !!! | AGCTTTTATATATATTGCTT+TGG | - | chr3_2:63258433-63258452 | Msa0416460:intron | 20.0% |
| !! | CAAAATATACAAAGAAATGT+AGG | + | chr3_2:63258473-63258492 | None:intergenic | 20.0% |
| !!! | CTACATTTCTTTGTATATTT+TGG | - | chr3_2:63258471-63258490 | Msa0416460:CDS | 20.0% |
| !! | ATATTAAGGAATCAATGTAA+GGG | + | chr3_2:63258624-63258643 | None:intergenic | 20.0% |
| !!! | TAATGTATTCTTCTCTATTT+TGG | - | chr3_2:63258824-63258843 | Msa0416460:intron | 20.0% |
| !! | AAGAAATTGCTAATAACTAT+GGG | + | chr3_2:63258877-63258896 | None:intergenic | 20.0% |
| !! | AAAGAAATTGCTAATAACTA+TGG | + | chr3_2:63258878-63258897 | None:intergenic | 20.0% |
| !! | CAAGACTAAAAAAACAAATA+AGG | + | chr3_2:63258962-63258981 | None:intergenic | 20.0% |
| !! | AATTATTTCACACATTCAAT+TGG | + | chr3_2:63259411-63259430 | None:intergenic | 20.0% |
| !! | AATATTTGTAAATTTAGTGG+CGG | - | chr3_2:63259886-63259905 | Msa0416460:intron | 20.0% |
| !! | AACATCAATTATAACCAAAA+CGG | + | chr3_2:63260106-63260125 | None:intergenic | 20.0% |
| !!! | TAATTTTATCATGGGTATAA+GGG | + | chr3_2:63260202-63260221 | None:intergenic | 20.0% |
| !!! | ATAATTTTATCATGGGTATA+AGG | + | chr3_2:63260203-63260222 | None:intergenic | 20.0% |
| !! | AACAAAATAAAAATGAACCA+TGG | + | chr3_2:63260441-63260460 | None:intergenic | 20.0% |
| !!! | TTATTTATCTTTGCTGATTT+TGG | - | chr3_2:63261361-63261380 | Msa0416460:intron | 20.0% |
| !! | CAATTAAAATGTAATAATCC+CGG | + | chr3_2:63261597-63261616 | None:intergenic | 20.0% |
| !!! | TACATTTTAATTGCATTTGT+CGG | - | chr3_2:63261604-63261623 | Msa0416460:intron | 20.0% |
| !! | TAAACTAAGAAAATGATCAT+AGG | + | chr3_2:63261732-63261751 | None:intergenic | 20.0% |
| !! | AAGAATCTATTATCAACAAA+TGG | - | chr3_2:63261762-63261781 | Msa0416460:CDS | 20.0% |
| ! | TGAAATAAATCGTTAGTACT+AGG | + | chr3_2:63258088-63258107 | None:intergenic | 25.0% |
| ! | ACTAACGATTTATTTCAAGA+AGG | - | chr3_2:63258091-63258110 | Msa0416460:intron | 25.0% |
| ! | CTAATGCAGATACTATAAAA+GGG | - | chr3_2:63258239-63258258 | Msa0416460:intron | 25.0% |
| ! | TAATGCAGATACTATAAAAG+GGG | - | chr3_2:63258240-63258259 | Msa0416460:intron | 25.0% |
| ! | AATACTCAAACTAAAACCAT+AGG | - | chr3_2:63258304-63258323 | Msa0416460:intron | 25.0% |
| !!! | AATCAATGTAAGGGTATTTT+TGG | + | chr3_2:63258615-63258634 | None:intergenic | 25.0% |
| ! | GATATTAAGGAATCAATGTA+AGG | + | chr3_2:63258625-63258644 | None:intergenic | 25.0% |
| !! | ATTGATTCCTTAATATCATG+AGG | - | chr3_2:63258628-63258647 | Msa0416460:intron | 25.0% |
| ! | ATGTACTTTCGTACTTATTA+AGG | + | chr3_2:63258741-63258760 | None:intergenic | 25.0% |
| ! | AGTTATTAGCAATTTCTTTG+AGG | - | chr3_2:63258879-63258898 | Msa0416460:intron | 25.0% |
| !! | AGATTTGACCAATTTTACAT+TGG | + | chr3_2:63259026-63259045 | None:intergenic | 25.0% |
| ! | ATTGTATATCTCTGACTAAT+TGG | - | chr3_2:63259511-63259530 | Msa0416460:intron | 25.0% |
| ! | TCCATGTTTAAGAGAATAAA+TGG | - | chr3_2:63259620-63259639 | Msa0416460:intron | 25.0% |
| ! | ACCATTTATTCTCTTAAACA+TGG | + | chr3_2:63259624-63259643 | None:intergenic | 25.0% |
| ! | TGTTTAGATCAGATATTCAA+TGG | + | chr3_2:63259686-63259705 | None:intergenic | 25.0% |
| ! | ACATCAATTATAACCAAAAC+GGG | + | chr3_2:63260105-63260124 | None:intergenic | 25.0% |
| ! | TATAATTGATGTTGAACCTA+AGG | - | chr3_2:63260113-63260132 | Msa0416460:intron | 25.0% |
| ! | TTTAAGGAGAAAAAAAACCT+CGG | + | chr3_2:63260604-63260623 | None:intergenic | 25.0% |
| ! | CATATTAAATACTAATCCCT+AGG | - | chr3_2:63260897-63260916 | Msa0416460:intron | 25.0% |
| ! | ATTACAGCAAGAAATTAGAT+GGG | + | chr3_2:63261071-63261090 | None:intergenic | 25.0% |
| ! | AATTACAGCAAGAAATTAGA+TGG | + | chr3_2:63261072-63261091 | None:intergenic | 25.0% |
| !!! | ATTTCTTGCTGTAATTTGTT+AGG | - | chr3_2:63261076-63261095 | Msa0416460:intron | 25.0% |
| !! | AGATTCAGTATCATGAATTT+TGG | - | chr3_2:63261330-63261349 | Msa0416460:intron | 25.0% |
| ! | CTATTATCAACAAATGGATA+AGG | - | chr3_2:63261768-63261787 | Msa0416460:CDS | 25.0% |
| TAGATTTCTCTGTTCTTTCT+CGG | + | chr3_2:63257432-63257451 | None:intergenic | 30.0% | |
| !! | ACTTAGCCTTGCTAAAATTA+GGG | + | chr3_2:63257747-63257766 | None:intergenic | 30.0% |
| !! | TACTTAGCCTTGCTAAAATT+AGG | + | chr3_2:63257748-63257767 | None:intergenic | 30.0% |
| ATGAATTGAACCTAACTTCA+TGG | - | chr3_2:63257917-63257936 | Msa0416460:intron | 30.0% | |
| ATAAATCGTTAGTACTAGGT+CGG | + | chr3_2:63258084-63258103 | None:intergenic | 30.0% | |
| ACGATTTATTTCAAGAAGGT+AGG | - | chr3_2:63258095-63258114 | Msa0416460:intron | 30.0% | |
| TTTATTTCAAGAAGGTAGGA+CGG | - | chr3_2:63258099-63258118 | Msa0416460:intron | 30.0% | |
| ! | CCTTTTATAGTATCTGCATT+AGG | + | chr3_2:63258241-63258260 | None:intergenic | 30.0% |
| CCTAATGCAGATACTATAAA+AGG | - | chr3_2:63258238-63258257 | Msa0416460:intron | 30.0% | |
| AATGCAGATACTATAAAAGG+GGG | - | chr3_2:63258241-63258260 | Msa0416460:intron | 30.0% | |
| !! | TTTGAGTATTGAGTGTGTAA+TGG | + | chr3_2:63258294-63258313 | None:intergenic | 30.0% |
| ATACAAAGAAATGTAGGTCT+TGG | + | chr3_2:63258467-63258486 | None:intergenic | 30.0% | |
| ! | CATTTTATGAGACAACTTGT+GGG | + | chr3_2:63258501-63258520 | None:intergenic | 30.0% |
| GTTATCTCCTCATGATATTA+AGG | + | chr3_2:63258638-63258657 | None:intergenic | 30.0% | |
| AGGAGATAACCATTATAATC+AGG | - | chr3_2:63258648-63258667 | Msa0416460:intron | 30.0% | |
| GGAGATAACCATTATAATCA+GGG | - | chr3_2:63258649-63258668 | Msa0416460:intron | 30.0% | |
| GAGATAACCATTATAATCAG+GGG | - | chr3_2:63258650-63258669 | Msa0416460:intron | 30.0% | |
| AGTGAGTATATGGTATGATA+TGG | - | chr3_2:63258785-63258804 | Msa0416460:intron | 30.0% | |
| TTGTTCTATGTGATGACTAA+AGG | - | chr3_2:63258979-63258998 | Msa0416460:CDS | 30.0% | |
| TGTTCTATGTGATGACTAAA+GGG | - | chr3_2:63258980-63258999 | Msa0416460:CDS | 30.0% | |
| ATTCCACGAAGAATAAACAT+TGG | + | chr3_2:63259099-63259118 | None:intergenic | 30.0% | |
| TCAACAACCAACATAAAACT+TGG | - | chr3_2:63259164-63259183 | Msa0416460:CDS | 30.0% | |
| !! | GATTGAACCAAGTTTTATGT+TGG | + | chr3_2:63259174-63259193 | None:intergenic | 30.0% |
| AGAGAATAAATGGTATGAGT+TGG | - | chr3_2:63259630-63259649 | Msa0416460:intron | 30.0% | |
| ACAAACAATGTTTACAGCAA+AGG | - | chr3_2:63259703-63259722 | Msa0416460:CDS | 30.0% | |
| ATTGAAACATTACTTCACAC+AGG | + | chr3_2:63259826-63259845 | None:intergenic | 30.0% | |
| GAGATATTAAAGCCTAAATG+GGG | + | chr3_2:63259861-63259880 | None:intergenic | 30.0% | |
| GGAGATATTAAAGCCTAAAT+GGG | + | chr3_2:63259862-63259881 | None:intergenic | 30.0% | |
| !! | ACATTTTCACAAGGGTATAA+GGG | + | chr3_2:63259923-63259942 | None:intergenic | 30.0% |
| !! | AACATTTTCACAAGGGTATA+AGG | + | chr3_2:63259924-63259943 | None:intergenic | 30.0% |
| ! | TCATGACAACATTTTCACAA+GGG | + | chr3_2:63259931-63259950 | None:intergenic | 30.0% |
| ! | ATCATGACAACATTTTCACA+AGG | + | chr3_2:63259932-63259951 | None:intergenic | 30.0% |
| GTGAAAATGTTGTCATGATT+TGG | - | chr3_2:63259933-63259952 | Msa0416460:intron | 30.0% | |
| !! | AAATGTTGTCATGATTTGGT+TGG | - | chr3_2:63259937-63259956 | Msa0416460:intron | 30.0% |
| AATTTGGATAGAGATTGATC+CGG | + | chr3_2:63260046-63260065 | None:intergenic | 30.0% | |
| TATCCAAATTGATCATGCTT+TGG | - | chr3_2:63260056-63260075 | Msa0416460:intron | 30.0% | |
| ATTATAACCAAAACGGGATT+TGG | + | chr3_2:63260099-63260118 | None:intergenic | 30.0% | |
| AAAAACGACTCTTCTGTATA+TGG | - | chr3_2:63260256-63260275 | Msa0416460:intron | 30.0% | |
| ATGCAAGACTTAAAGAGATA+AGG | - | chr3_2:63260788-63260807 | Msa0416460:intron | 30.0% | |
| !! | TACCTTGATCTTGTTATTGA+TGG | - | chr3_2:63260814-63260833 | Msa0416460:intron | 30.0% |
| TTCCATCAATAACAAGATCA+AGG | + | chr3_2:63260819-63260838 | None:intergenic | 30.0% | |
| TATAGGATCTCATGGTTTAA+GGG | + | chr3_2:63260847-63260866 | None:intergenic | 30.0% | |
| TTACAGCAAGAAATTAGATG+GGG | + | chr3_2:63261070-63261089 | None:intergenic | 30.0% | |
| AACAATCTAGAAGAGACATT+CGG | + | chr3_2:63261199-63261218 | None:intergenic | 30.0% | |
| !!! | CTGATTTTGGCTCTATATTT+AGG | - | chr3_2:63261374-63261393 | Msa0416460:intron | 30.0% |
| GTAGAGAAATACAAGTAACA+TGG | - | chr3_2:63261647-63261666 | Msa0416460:intron | 30.0% | |
| TATACTTGCAAACTCAGTAA+CGG | + | chr3_2:63261958-63261977 | None:intergenic | 30.0% | |
| ! | TTGCGTTTTTATCACATCCA+TGG | + | chr3_2:63257468-63257487 | None:intergenic | 35.0% |
| !! | TTGCTTGGTTCTACTTTCAA+AGG | - | chr3_2:63257602-63257621 | Msa0416460:three_prime_UTR | 35.0% |
| GTAGCTATTGGAAACATCAA+CGG | + | chr3_2:63257630-63257649 | None:intergenic | 35.0% | |
| !! | TTTGTGCCCTAATTTTAGCA+AGG | - | chr3_2:63257738-63257757 | Msa0416460:three_prime_UTR | 35.0% |
| AGGAATATTCTATCCTTCGT+TGG | + | chr3_2:63258162-63258181 | None:intergenic | 35.0% | |
| ACGAAGGATAGAATATTCCT+TGG | - | chr3_2:63258162-63258181 | Msa0416460:intron | 35.0% | |
| CGAAGGATAGAATATTCCTT+GGG | - | chr3_2:63258163-63258182 | Msa0416460:intron | 35.0% | |
| CAAACCAGCCTTAAATATCA+GGG | - | chr3_2:63258327-63258346 | Msa0416460:intron | 35.0% | |
| ! | TGTGTTCTAAACCAGAACAT+TGG | - | chr3_2:63258364-63258383 | Msa0416460:intron | 35.0% |
| ! | CCATTTTATGAGACAACTTG+TGG | + | chr3_2:63258502-63258521 | None:intergenic | 35.0% |
| CCACAAGTTGTCTCATAAAA+TGG | - | chr3_2:63258499-63258518 | Msa0416460:CDS | 35.0% | |
| ! | ACCATTTTGTGACAACTTGT+GGG | + | chr3_2:63258529-63258548 | None:intergenic | 35.0% |
| ! | AACCATTTTGTGACAACTTG+TGG | + | chr3_2:63258530-63258549 | None:intergenic | 35.0% |
| ! | TTGAGTCTAGAGTGAGTATA+TGG | - | chr3_2:63258775-63258794 | Msa0416460:intron | 35.0% |
| GTTGGCAACCAATGTAAAAT+TGG | - | chr3_2:63259015-63259034 | Msa0416460:intron | 35.0% | |
| TCTTGAACTGTTCAGTATGA+TGG | - | chr3_2:63259045-63259064 | Msa0416460:intron | 35.0% | |
| CATCCAATGTTTATTCTTCG+TGG | - | chr3_2:63259093-63259112 | Msa0416460:intron | 35.0% | |
| !! | TGTATGACAGTTTTGTGTGA+TGG | - | chr3_2:63259120-63259139 | Msa0416460:intron | 35.0% |
| GATGGTTGAAATGTTTCGTT+AGG | - | chr3_2:63259138-63259157 | Msa0416460:intron | 35.0% | |
| ! | TTGAAGGGTTTTCTTAGCTT+TGG | - | chr3_2:63259217-63259236 | Msa0416460:CDS | 35.0% |
| AACTAATAGAAGCCCAAATG+TGG | + | chr3_2:63259287-63259306 | None:intergenic | 35.0% | |
| TCCTTGTCATCTTCTTCAAA+AGG | + | chr3_2:63259554-63259573 | None:intergenic | 35.0% | |
| ACATTGCTTCGTGATAATTG+TGG | + | chr3_2:63259598-63259617 | None:intergenic | 35.0% | |
| AAAATGACCTCGACATTCAT+GGG | - | chr3_2:63259768-63259787 | Msa0416460:CDS | 35.0% | |
| TAAATAACCCATGAATGTCG+AGG | + | chr3_2:63259778-63259797 | None:intergenic | 35.0% | |
| TCTTTACCTTTACCCCATTT+AGG | - | chr3_2:63259846-63259865 | Msa0416460:intron | 35.0% | |
| TTAAAGCCTAAATGGGGTAA+AGG | + | chr3_2:63259855-63259874 | None:intergenic | 35.0% | |
| GGGAGATATTAAAGCCTAAA+TGG | + | chr3_2:63259863-63259882 | None:intergenic | 35.0% | |
| AGACAATAATGCAAGTGAAG+AGG | + | chr3_2:63260005-63260024 | None:intergenic | 35.0% | |
| ATTTGGATAGAGATTGATCC+GGG | + | chr3_2:63260045-63260064 | None:intergenic | 35.0% | |
| AGTCCAAAGCATGATCAATT+TGG | + | chr3_2:63260062-63260081 | None:intergenic | 35.0% | |
| ! | ACAGCATAGTATGCTTTTGT+TGG | + | chr3_2:63260150-63260169 | None:intergenic | 35.0% |
| ! | AAAAGCATACTATGCTGTTG+AGG | - | chr3_2:63260152-63260171 | Msa0416460:intron | 35.0% |
| ! | AGAACTTCTGCAATTTTCCA+TGG | - | chr3_2:63260421-63260440 | Msa0416460:intron | 35.0% |
| ATGTTCAGCAAGCAACTATA+TGG | + | chr3_2:63260491-63260510 | None:intergenic | 35.0% | |
| AATTCTTCTTATCCTTGTGC+AGG | - | chr3_2:63260525-63260544 | Msa0416460:intron | 35.0% | |
| AAAAAAAACCTCGGTTGCAA+GGG | + | chr3_2:63260595-63260614 | None:intergenic | 35.0% | |
| ! | TACGCTGTAGCTTTTTACAT+AGG | - | chr3_2:63260732-63260751 | Msa0416460:intron | 35.0% |
| ! | TAGCTTTTTACATAGGTGAG+CGG | - | chr3_2:63260739-63260758 | Msa0416460:intron | 35.0% |
| GTATAGGATCTCATGGTTTA+AGG | + | chr3_2:63260848-63260867 | None:intergenic | 35.0% | |
| TGTCAACCATGAGACATAAA+TGG | - | chr3_2:63260977-63260996 | Msa0416460:intron | 35.0% | |
| AACCATGAGACATAAATGGA+TGG | - | chr3_2:63260981-63261000 | Msa0416460:intron | 35.0% | |
| TTCCATCCATTTATGTCTCA+TGG | + | chr3_2:63260986-63261005 | None:intergenic | 35.0% | |
| TACAGCAAGAAATTAGATGG+GGG | + | chr3_2:63261069-63261088 | None:intergenic | 35.0% | |
| AGATCAGAGACATTGAGATT+TGG | + | chr3_2:63261119-63261138 | None:intergenic | 35.0% | |
| CAATGTCTCTGATCTTATCA+AGG | - | chr3_2:63261124-63261143 | Msa0416460:intron | 35.0% | |
| GAAAACGAATGATATGATGC+TGG | - | chr3_2:63261242-63261261 | Msa0416460:intron | 35.0% | |
| !! | CCTTGTTGTTAATCAAGTTG+TGG | + | chr3_2:63261308-63261327 | None:intergenic | 35.0% |
| CCACAACTTGATTAACAACA+AGG | - | chr3_2:63261305-63261324 | Msa0416460:intron | 35.0% | |
| TGCTCAACAAAGAACATGAA+AGG | - | chr3_2:63261470-63261489 | Msa0416460:intron | 35.0% | |
| GCTCAACAAAGAACATGAAA+GGG | - | chr3_2:63261471-63261490 | Msa0416460:intron | 35.0% | |
| ACATACAGAAATTAAGCGCA+CGG | + | chr3_2:63261698-63261717 | None:intergenic | 35.0% | |
| ACGTTGTGTAGTTAACAATG+AGG | - | chr3_2:63261888-63261907 | Msa0416460:five_prime_UTR | 35.0% | |
| ACAGATGTAGGGACTGAATT+AGG | - | chr3_2:63258019-63258038 | Msa0416460:CDS | 40.0% | |
| ATCCTTCGTTGGCAATGATT+AGG | + | chr3_2:63258151-63258170 | None:intergenic | 40.0% | |
| ACCCACACTTCATATGGATT+TGG | - | chr3_2:63258186-63258205 | Msa0416460:CDS | 40.0% | |
| CCCAAATCCATATGAAGTGT+GGG | + | chr3_2:63258190-63258209 | None:intergenic | 40.0% | |
| CCCACACTTCATATGGATTT+GGG | - | chr3_2:63258187-63258206 | Msa0416460:CDS | 40.0% | |
| CCACACTTCATATGGATTTG+GGG | - | chr3_2:63258188-63258207 | Msa0416460:CDS | 40.0% | |
| ! | ATTTGGGGCTGACAAATGAT+TGG | - | chr3_2:63258203-63258222 | Msa0416460:CDS | 40.0% |
| !! | ATTTAAGGCTGGTTTGCCTA+TGG | + | chr3_2:63258323-63258342 | None:intergenic | 40.0% |
| GCAAACCAGCCTTAAATATC+AGG | - | chr3_2:63258326-63258345 | Msa0416460:intron | 40.0% | |
| ! | TGGTTTAGAACACAGTCCTA+GGG | + | chr3_2:63258358-63258377 | None:intergenic | 40.0% |
| CTTCAACCATCACACATAAC+TGG | + | chr3_2:63258403-63258422 | None:intergenic | 40.0% | |
| TCCCACAAGTTGTCACAAAA+TGG | - | chr3_2:63258525-63258544 | Msa0416460:CDS | 40.0% | |
| TGGTCTACCCCTGATTATAA+TGG | + | chr3_2:63258660-63258679 | None:intergenic | 40.0% | |
| TACACAGAGTAGCAAACATG+TGG | + | chr3_2:63258851-63258870 | None:intergenic | 40.0% | |
| ! | AGGCATCGTTTAGTATGAGA+TGG | - | chr3_2:63258899-63258918 | Msa0416460:intron | 40.0% |
| GATGACTAAAGGGTTGTGTT+AGG | - | chr3_2:63258990-63259009 | Msa0416460:intron | 40.0% | |
| CTGTTCAGTATGATGGTTGA+AGG | - | chr3_2:63259052-63259071 | Msa0416460:intron | 40.0% | |
| GATGGTTGAAGGATTGTGTT+AGG | - | chr3_2:63259063-63259082 | Msa0416460:intron | 40.0% | |
| TCTATGACAGTTCTGTGTGA+TGG | - | chr3_2:63259194-63259213 | Msa0416460:CDS | 40.0% | |
| AGTTCTGTGTGATGGTTGAA+GGG | - | chr3_2:63259202-63259221 | Msa0416460:CDS | 40.0% | |
| TGAAGACAGCTTACCACATT+TGG | - | chr3_2:63259271-63259290 | Msa0416460:intron | 40.0% | |
| GAAGACAGCTTACCACATTT+GGG | - | chr3_2:63259272-63259291 | Msa0416460:intron | 40.0% | |
| CAACTCAGTAAACAGATCAG+TGG | + | chr3_2:63259383-63259402 | None:intergenic | 40.0% | |
| CACTGATCTGTTTACTGAGT+TGG | - | chr3_2:63259381-63259400 | Msa0416460:intron | 40.0% | |
| !! | GCCTTTTGAAGAAGATGACA+AGG | - | chr3_2:63259550-63259569 | Msa0416460:CDS | 40.0% |
| GAAAATGACCTCGACATTCA+TGG | - | chr3_2:63259767-63259786 | Msa0416460:CDS | 40.0% | |
| TTCATCTGTGCTTTGTATCC+CGG | - | chr3_2:63260024-63260043 | Msa0416460:intron | 40.0% | |
| ! | CTATGTTCCAAATCCCGTTT+TGG | - | chr3_2:63260089-63260108 | Msa0416460:intron | 40.0% |
| TGATGTTGAACCTAAGGAGT+TGG | - | chr3_2:63260119-63260138 | Msa0416460:intron | 40.0% | |
| GATGTTGAACCTAAGGAGTT+GGG | - | chr3_2:63260120-63260139 | Msa0416460:intron | 40.0% | |
| TTGAGGAGGTTAAAGAGGTA+GGG | - | chr3_2:63260169-63260188 | Msa0416460:intron | 40.0% | |
| ACGACTCTTCTGTATATGGA+CGG | - | chr3_2:63260260-63260279 | Msa0416460:intron | 40.0% | |
| TGCTACTCAGAAAAGCCAAA+AGG | - | chr3_2:63260331-63260350 | Msa0416460:intron | 40.0% | |
| GAAAAAAAACCTCGGTTGCA+AGG | + | chr3_2:63260596-63260615 | None:intergenic | 40.0% | |
| !! | AACCACAACAAAGCATTGCA+GGG | + | chr3_2:63260680-63260699 | None:intergenic | 40.0% |
| !! | AAACCACAACAAAGCATTGC+AGG | + | chr3_2:63260681-63260700 | None:intergenic | 40.0% |
| TCTTGCATCCAAACCTTTCA+AGG | + | chr3_2:63260776-63260795 | None:intergenic | 40.0% | |
| AACAAACCTGCAGATGGTAT+AGG | + | chr3_2:63260864-63260883 | None:intergenic | 40.0% | |
| ATGAGAAACAAACCTGCAGA+TGG | + | chr3_2:63260870-63260889 | None:intergenic | 40.0% | |
| CTTCGAATTGTTCGTGAATG+TGG | - | chr3_2:63260920-63260939 | Msa0416460:intron | 40.0% | |
| GGGATCAGCATTATTTACGT+TGG | + | chr3_2:63260947-63260966 | None:intergenic | 40.0% | |
| ATGGTTGACAATTAGAGGTG+GGG | + | chr3_2:63260967-63260986 | None:intergenic | 40.0% | |
| CATGGTTGACAATTAGAGGT+GGG | + | chr3_2:63260968-63260987 | None:intergenic | 40.0% | |
| TCATGGTTGACAATTAGAGG+TGG | + | chr3_2:63260969-63260988 | None:intergenic | 40.0% | |
| GTCTCATGGTTGACAATTAG+AGG | + | chr3_2:63260972-63260991 | None:intergenic | 40.0% | |
| GATGGGGGGAAAAACAATAA+TGG | + | chr3_2:63261054-63261073 | None:intergenic | 40.0% | |
| ACAGCAAGAAATTAGATGGG+GGG | + | chr3_2:63261068-63261087 | None:intergenic | 40.0% | |
| ! | AGACATTGAGATTTGGTAGC+AGG | + | chr3_2:63261112-63261131 | None:intergenic | 40.0% |
| ! | GATCTTATCAAGGCTTTTGC+AGG | - | chr3_2:63261134-63261153 | Msa0416460:intron | 40.0% |
| CACTTCTAATGAGAGACGAT+AGG | + | chr3_2:63261275-63261294 | None:intergenic | 40.0% | |
| TAAGGTTTCGACGATTGCAA+TGG | - | chr3_2:63261535-63261554 | Msa0416460:intron | 40.0% | |
| AAGGTTTCGACGATTGCAAT+GGG | - | chr3_2:63261536-63261555 | Msa0416460:intron | 40.0% | |
| ! | AGGCACTATGATTGATTCCA+TGG | - | chr3_2:63261570-63261589 | Msa0416460:intron | 40.0% |
| ! | CTATGATTGATTCCATGGAC+CGG | - | chr3_2:63261575-63261594 | Msa0416460:intron | 40.0% |
| ! | TATGATTGATTCCATGGACC+GGG | - | chr3_2:63261576-63261595 | Msa0416460:intron | 40.0% |
| AATGTAATAATCCCGGTCCA+TGG | + | chr3_2:63261590-63261609 | None:intergenic | 40.0% | |
| GGTCTTGAGCATTTCTGATA+GGG | - | chr3_2:63261625-63261644 | Msa0416460:intron | 40.0% | |
| CATACAGAAATTAAGCGCAC+GGG | + | chr3_2:63261697-63261716 | None:intergenic | 40.0% | |
| AAGCAAAATACAGCGGTGAC+TGG | - | chr3_2:63257352-63257371 | Msa0416460:three_prime_UTR | 45.0% | |
| ! | AAATACAGCGGTGACTGGTT+TGG | - | chr3_2:63257357-63257376 | Msa0416460:three_prime_UTR | 45.0% |
| !! | TTTGGTTAGTGGTGTTGCAG+AGG | - | chr3_2:63257375-63257394 | Msa0416460:three_prime_UTR | 45.0% |
| !! | TTGGTTAGTGGTGTTGCAGA+GGG | - | chr3_2:63257376-63257395 | Msa0416460:three_prime_UTR | 45.0% |
| TCTAAGCTTCGAATTCGCCA+TGG | - | chr3_2:63257448-63257467 | Msa0416460:three_prime_UTR | 45.0% | |
| AACACGCTTGCGAGTATCTT+TGG | + | chr3_2:63257573-63257592 | None:intergenic | 45.0% | |
| GATGTTTCCAATAGCTACGC+TGG | - | chr3_2:63257632-63257651 | Msa0416460:three_prime_UTR | 45.0% | |
| ! | TTCCAATAGCTACGCTGGTT+CGG | - | chr3_2:63257637-63257656 | Msa0416460:three_prime_UTR | 45.0% |
| CCTAACTTCATGGCTCAAAG+CGG | - | chr3_2:63257927-63257946 | Msa0416460:intron | 45.0% | |
| ! | GATTGCCCAATAAAGGGCAT+AGG | - | chr3_2:63257952-63257971 | Msa0416460:intron | 45.0% |
| GGGTTCCTATGCCCTTTATT+GGG | + | chr3_2:63257960-63257979 | None:intergenic | 45.0% | |
| TCCACCTTGTCAGTTTAGCT+CGG | + | chr3_2:63257992-63258011 | None:intergenic | 45.0% | |
| TAAACTGACAAGGTGGAACG+TGG | - | chr3_2:63257995-63258014 | Msa0416460:intron | 45.0% | |
| TGGAACGTGGAACAGATGTA+GGG | - | chr3_2:63258008-63258027 | Msa0416460:intron | 45.0% | |
| AAGGTAGGACGGACATTACA+TGG | - | chr3_2:63258110-63258129 | Msa0416460:intron | 45.0% | |
| GGCAATGATTAGGCATAGCA+CGG | + | chr3_2:63258141-63258160 | None:intergenic | 45.0% | |
| TGCCTAATCATTGCCAACGA+AGG | - | chr3_2:63258146-63258165 | Msa0416460:intron | 45.0% | |
| CCCCAAATCCATATGAAGTG+TGG | + | chr3_2:63258191-63258210 | None:intergenic | 45.0% | |
| GGCTGACAAATGATTGGAAG+AGG | - | chr3_2:63258209-63258228 | Msa0416460:CDS | 45.0% | |
| TAAAAGGGGGACTTTGCTTC+TGG | - | chr3_2:63258254-63258273 | Msa0416460:intron | 45.0% | |
| AAAAGGGGGACTTTGCTTCT+GGG | - | chr3_2:63258255-63258274 | Msa0416460:intron | 45.0% | |
| ! | TTGGCCCTGATATTTAAGGC+TGG | + | chr3_2:63258334-63258353 | None:intergenic | 45.0% |
| GGGTTTGGCCCTGATATTTA+AGG | + | chr3_2:63258338-63258357 | None:intergenic | 45.0% | |
| AAATATCAGGGCCAAACCCT+AGG | - | chr3_2:63258339-63258358 | Msa0416460:intron | 45.0% | |
| TAGAACACAGTCCTAGGGTT+TGG | + | chr3_2:63258353-63258372 | None:intergenic | 45.0% | |
| ! | CTGGTTTAGAACACAGTCCT+AGG | + | chr3_2:63258359-63258378 | None:intergenic | 45.0% |
| CAGAGATTCGACCAATGTTC+TGG | + | chr3_2:63258378-63258397 | None:intergenic | 45.0% | |
| TCTGTGCCAGTTATGTGTGA+TGG | - | chr3_2:63258394-63258413 | Msa0416460:intron | 45.0% | |
| ! | AGCATGATGCGACTTGTTTG+TGG | - | chr3_2:63258927-63258946 | Msa0416460:intron | 45.0% |
| AAAGGGTTGTGTTAGGCAGT+TGG | - | chr3_2:63258997-63259016 | Msa0416460:intron | 45.0% | |
| CAGTTCTGTGTGATGGTTGA+AGG | - | chr3_2:63259201-63259220 | Msa0416460:CDS | 45.0% | |
| ATGACAAGGACCCTAGCATT+TGG | - | chr3_2:63259564-63259583 | Msa0416460:CDS | 45.0% | |
| GGTCGAGAAACCAAATGCTA+GGG | + | chr3_2:63259577-63259596 | None:intergenic | 45.0% | |
| TGGTCGAGAAACCAAATGCT+AGG | + | chr3_2:63259578-63259597 | None:intergenic | 45.0% | |
| ! | GTTTACAGCAAAGGAGCATG+TGG | - | chr3_2:63259712-63259731 | Msa0416460:CDS | 45.0% |
| !! | AGGTCATTTTCACGCAGCTT+TGG | + | chr3_2:63259758-63259777 | None:intergenic | 45.0% |
| GTTGGAATTCCCAACTCCTT+AGG | + | chr3_2:63260132-63260151 | None:intergenic | 45.0% | |
| AGCATACTATGCTGTTGAGG+AGG | - | chr3_2:63260155-63260174 | Msa0416460:intron | 45.0% | |
| TGCTGTTGAGGAGGTTAAAG+AGG | - | chr3_2:63260164-63260183 | Msa0416460:intron | 45.0% | |
| GTTGAGGAGGTTAAAGAGGT+AGG | - | chr3_2:63260168-63260187 | Msa0416460:intron | 45.0% | |
| ACTCTTCTGTATATGGACGG+TGG | - | chr3_2:63260263-63260282 | Msa0416460:intron | 45.0% | |
| CTCTTCTGTATATGGACGGT+GGG | - | chr3_2:63260264-63260283 | Msa0416460:intron | 45.0% | |
| ! | GCACATGCACAAAGACCTTT+TGG | + | chr3_2:63260349-63260368 | None:intergenic | 45.0% |
| GCTCATGAGGTTGAGGAAAT+AGG | - | chr3_2:63260383-63260402 | Msa0416460:intron | 45.0% | |
| TTCTTATCCTTGTGCAGGAG+TGG | - | chr3_2:63260530-63260549 | Msa0416460:intron | 45.0% | |
| ! | TTCCCTGCAATGCTTTGTTG+TGG | - | chr3_2:63260675-63260694 | Msa0416460:intron | 45.0% |
| ATAGGTGAGCGGAAAACTCA+CGG | - | chr3_2:63260750-63260769 | Msa0416460:intron | 45.0% | |
| GCAGATGGTATAGGATCTCA+TGG | + | chr3_2:63260855-63260874 | None:intergenic | 45.0% | |
| TGAGATCCTATACCATCTGC+AGG | - | chr3_2:63260855-63260874 | Msa0416460:intron | 45.0% | |
| CACGAACAATTCGAAGCCTA+GGG | + | chr3_2:63260916-63260935 | None:intergenic | 45.0% | |
| TCACGAACAATTCGAAGCCT+AGG | + | chr3_2:63260917-63260936 | None:intergenic | 45.0% | |
| AAACCTTATGCAGCTGCACT+TGG | + | chr3_2:63261523-63261542 | None:intergenic | 45.0% | |
| CGGTCTTGAGCATTTCTGAT+AGG | - | chr3_2:63261624-63261643 | Msa0416460:intron | 45.0% | |
| ! | CGCGTGTTAACTTGATGGAA+AGG | + | chr3_2:63261838-63261857 | None:intergenic | 45.0% |
| !! | AATTACTTAAAATATAAATT+TGG | - | chr3_2:63259427-63259446 | Msa0416460:intron | 5.0% |
| !! | TTCATTATTATATTATATTT+AGG | - | chr3_2:63261398-63261417 | Msa0416460:intron | 5.0% |
| CTCATCACGTTCGATCGAGA+AGG | - | chr3_2:63257493-63257512 | Msa0416460:three_prime_UTR | 50.0% | |
| ATCACGTTCGATCGAGAAGG+TGG | - | chr3_2:63257496-63257515 | Msa0416460:three_prime_UTR | 50.0% | |
| ACGATGCTGAGCAACACTAG+AGG | + | chr3_2:63257530-63257549 | None:intergenic | 50.0% | |
| GATACTCGCAAGCGTGTTGT+CGG | - | chr3_2:63257575-63257594 | Msa0416460:three_prime_UTR | 50.0% | |
| !! | CGTGTTGTCGGTGTTTTGCT+TGG | - | chr3_2:63257587-63257606 | Msa0416460:three_prime_UTR | 50.0% |
| ATCCGAACCAGCGTAGCTAT+TGG | + | chr3_2:63257642-63257661 | None:intergenic | 50.0% | |
| ! | CCGCTTTGAGCCATGAAGTT+AGG | + | chr3_2:63257930-63257949 | None:intergenic | 50.0% |
| AACTTCATGGCTCAAAGCGG+AGG | - | chr3_2:63257930-63257949 | Msa0416460:intron | 50.0% | |
| AGCGGAGGATTGCCCAATAA+AGG | - | chr3_2:63257945-63257964 | Msa0416460:intron | 50.0% | |
| GCGGAGGATTGCCCAATAAA+GGG | - | chr3_2:63257946-63257965 | Msa0416460:intron | 50.0% | |
| GGGGTTCCTATGCCCTTTAT+TGG | + | chr3_2:63257961-63257980 | None:intergenic | 50.0% | |
| ! | ATAAAGGGCATAGGAACCCC+TGG | - | chr3_2:63257961-63257980 | Msa0416460:intron | 50.0% |
| ! | TAAAGGGCATAGGAACCCCT+GGG | - | chr3_2:63257962-63257981 | Msa0416460:intron | 50.0% |
| ACGACCGAGCTAAACTGACA+AGG | - | chr3_2:63257985-63258004 | Msa0416460:intron | 50.0% | |
| ACCGAGCTAAACTGACAAGG+TGG | - | chr3_2:63257988-63258007 | Msa0416460:intron | 50.0% | |
| GTGGAACGTGGAACAGATGT+AGG | - | chr3_2:63258007-63258026 | Msa0416460:intron | 50.0% | |
| ! | CAGTAACAAGGGCTGGTGTT+TGG | + | chr3_2:63258056-63258075 | None:intergenic | 50.0% |
| CAAACACCAGCCCTTGTTAC+TGG | - | chr3_2:63258054-63258073 | Msa0416460:CDS | 50.0% | |
| CATATGAAGTGTGGGTCCCA+AGG | + | chr3_2:63258182-63258201 | None:intergenic | 50.0% | |
| CTTGGGACCCACACTTCATA+TGG | - | chr3_2:63258180-63258199 | Msa0416460:intron | 50.0% | |
| AAAGGGGGACTTTGCTTCTG+GGG | - | chr3_2:63258256-63258275 | Msa0416460:intron | 50.0% | |
| !! | GGACTTTGCTTCTGGGGTAA+GGG | - | chr3_2:63258262-63258281 | Msa0416460:intron | 50.0% |
| ! | TACAGCAAAGGAGCATGTGG+TGG | - | chr3_2:63259715-63259734 | Msa0416460:CDS | 50.0% |
| ! | ACAGCAAAGGAGCATGTGGT+GGG | - | chr3_2:63259716-63259735 | Msa0416460:CDS | 50.0% |
| ATCAGAGATCGCTGCTCATG+AGG | - | chr3_2:63260370-63260389 | Msa0416460:intron | 50.0% | |
| AAGTGTTCCACTCCTGCACA+AGG | + | chr3_2:63260540-63260559 | None:intergenic | 50.0% | |
| AGGAGTGGAACACTTGCTCA+GGG | - | chr3_2:63260545-63260564 | Msa0416460:intron | 50.0% | |
| ACACTTGCTCAGGGATGTGA+AGG | - | chr3_2:63260554-63260573 | Msa0416460:intron | 50.0% | |
| GGAAAACTCACGGCCTTGAA+AGG | - | chr3_2:63260760-63260779 | Msa0416460:intron | 50.0% | |
| ACTCACGGCCTTGAAAGGTT+TGG | - | chr3_2:63260765-63260784 | Msa0416460:intron | 50.0% | |
| TATGCAGCTGCACTTGGTAC+TGG | + | chr3_2:63261517-63261536 | None:intergenic | 50.0% | |
| GTACCAAGTGCAGCTGCATA+AGG | - | chr3_2:63261517-63261536 | Msa0416460:intron | 50.0% | |
| !! | TGCAATGGGCTGAGCTCTAA+AGG | - | chr3_2:63261550-63261569 | Msa0416460:intron | 50.0% |
| ! | CTGCTCGCGTGTTAACTTGA+TGG | + | chr3_2:63261843-63261862 | None:intergenic | 50.0% |
| !! | GCGGTGACTGGTTTGGTTAG+TGG | - | chr3_2:63257364-63257383 | Msa0416460:three_prime_UTR | 55.0% |
| ACGTTCGATCGAGAAGGTGG+TGG | - | chr3_2:63257499-63257518 | Msa0416460:three_prime_UTR | 55.0% | |
| ! | AGTTTAGCTCGGTCGTCCCA+GGG | + | chr3_2:63257981-63258000 | None:intergenic | 55.0% |
| CACCAGCCCTTGTTACTGGA+CGG | - | chr3_2:63258058-63258077 | Msa0416460:CDS | 55.0% | |
| !! | GGGACTTTGCTTCTGGGGTA+AGG | - | chr3_2:63258261-63258280 | Msa0416460:intron | 55.0% |
| ! | CAGCAAAGGAGCATGTGGTG+GGG | - | chr3_2:63259717-63259736 | Msa0416460:CDS | 55.0% |
| GATCGCTGCTCATGAGGTTG+AGG | - | chr3_2:63260376-63260395 | Msa0416460:intron | 55.0% | |
| CAGGAGTGGAACACTTGCTC+AGG | - | chr3_2:63260544-63260563 | Msa0416460:intron | 55.0% | |
| !! | CTCGGTTGCAAGGGTGCTAA+TGG | + | chr3_2:63260586-63260605 | None:intergenic | 55.0% |
| CATTAGCACCCTTGCAACCG+AGG | - | chr3_2:63260584-63260603 | Msa0416460:intron | 55.0% | |
| ! | GTTTAGCTCGGTCGTCCCAG+GGG | + | chr3_2:63257980-63257999 | None:intergenic | 60.0% |
| ! | CAGTTTAGCTCGGTCGTCCC+AGG | + | chr3_2:63257982-63258001 | None:intergenic | 60.0% |
| GGTCGGCCGTCCAGTAACAA+GGG | + | chr3_2:63258067-63258086 | None:intergenic | 60.0% | |
| AGGTCGGCCGTCCAGTAACA+AGG | + | chr3_2:63258068-63258087 | None:intergenic | 60.0% | |
| ! | CAAAGGAGCATGTGGTGGGG+TGG | - | chr3_2:63259720-63259739 | Msa0416460:CDS | 60.0% |
| ! | GTGGTGGGGTGGTATAGCAC+TGG | - | chr3_2:63259731-63259750 | Msa0416460:CDS | 60.0% |
| !! | GCTGCACTTGGTACTGGTGC+TGG | + | chr3_2:63261511-63261530 | None:intergenic | 60.0% |
| GGCCGTCCAGTAACAAGGGC+TGG | + | chr3_2:63258063-63258082 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 63257339 | 63261997 | 63257339 | ID=Msa0416460;Name=Msa0416460 |
| chr3_2 | mRNA | 63257339 | 63261997 | 63257339 | ID=Msa0416460-mRNA-1;Parent=Msa0416460;Name=Msa0416460-mRNA-1;_AED=0.04;_eAED=0.04;_QI=128|1|1|1|1|1|10|460|309 |
| chr3_2 | exon | 63257339 | 63257867 | 63257339 | ID=Msa0416460-mRNA-1:exon:13764;Parent=Msa0416460-mRNA-1 |
| chr3_2 | exon | 63258010 | 63258095 | 63258010 | ID=Msa0416460-mRNA-1:exon:13763;Parent=Msa0416460-mRNA-1 |
| chr3_2 | exon | 63258181 | 63258238 | 63258181 | ID=Msa0416460-mRNA-1:exon:13762;Parent=Msa0416460-mRNA-1 |
| chr3_2 | exon | 63258460 | 63258582 | 63258460 | ID=Msa0416460-mRNA-1:exon:13761;Parent=Msa0416460-mRNA-1 |
| chr3_2 | exon | 63258731 | 63258789 | 63258731 | ID=Msa0416460-mRNA-1:exon:13760;Parent=Msa0416460-mRNA-1 |
| chr3_2 | exon | 63258932 | 63259007 | 63258932 | ID=Msa0416460-mRNA-1:exon:13759;Parent=Msa0416460-mRNA-1 |
| chr3_2 | exon | 63259151 | 63259247 | 63259151 | ID=Msa0416460-mRNA-1:exon:13758;Parent=Msa0416460-mRNA-1 |
| chr3_2 | exon | 63259535 | 63259616 | 63259535 | ID=Msa0416460-mRNA-1:exon:13757;Parent=Msa0416460-mRNA-1 |
| chr3_2 | exon | 63259695 | 63259787 | 63259695 | ID=Msa0416460-mRNA-1:exon:13756;Parent=Msa0416460-mRNA-1 |
| chr3_2 | exon | 63261683 | 63261997 | 63261683 | ID=Msa0416460-mRNA-1:exon:13755;Parent=Msa0416460-mRNA-1 |
| chr3_2 | five_prime_UTR | 63261870 | 63261997 | 63261870 | ID=Msa0416460-mRNA-1:five_prime_utr;Parent=Msa0416460-mRNA-1 |
| chr3_2 | CDS | 63261683 | 63261869 | 63261683 | ID=Msa0416460-mRNA-1:cds;Parent=Msa0416460-mRNA-1 |
| chr3_2 | CDS | 63259695 | 63259787 | 63259695 | ID=Msa0416460-mRNA-1:cds;Parent=Msa0416460-mRNA-1 |
| chr3_2 | CDS | 63259535 | 63259616 | 63259535 | ID=Msa0416460-mRNA-1:cds;Parent=Msa0416460-mRNA-1 |
| chr3_2 | CDS | 63259151 | 63259247 | 63259151 | ID=Msa0416460-mRNA-1:cds;Parent=Msa0416460-mRNA-1 |
| chr3_2 | CDS | 63258932 | 63259007 | 63258932 | ID=Msa0416460-mRNA-1:cds;Parent=Msa0416460-mRNA-1 |
| chr3_2 | CDS | 63258731 | 63258789 | 63258731 | ID=Msa0416460-mRNA-1:cds;Parent=Msa0416460-mRNA-1 |
| chr3_2 | CDS | 63258460 | 63258582 | 63258460 | ID=Msa0416460-mRNA-1:cds;Parent=Msa0416460-mRNA-1 |
| chr3_2 | CDS | 63258181 | 63258238 | 63258181 | ID=Msa0416460-mRNA-1:cds;Parent=Msa0416460-mRNA-1 |
| chr3_2 | CDS | 63258010 | 63258095 | 63258010 | ID=Msa0416460-mRNA-1:cds;Parent=Msa0416460-mRNA-1 |
| chr3_2 | CDS | 63257799 | 63257867 | 63257799 | ID=Msa0416460-mRNA-1:cds;Parent=Msa0416460-mRNA-1 |
| chr3_2 | three_prime_UTR | 63257339 | 63257798 | 63257339 | ID=Msa0416460-mRNA-1:three_prime_utr;Parent=Msa0416460-mRNA-1 |
| Gene Sequence |
| Protein sequence |
