Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1320630 | sp|Q945M9|NFYA9_ARATH | 50.340 | 147 | 70 | 2 | 98 | 241 | 108 | 254 | 9.30e-40 | 144 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1320630 | I3TAV7 | 94.408 | 304 | 16 | 1 | 1 | 303 | 1 | 304 | 0.0 | 591 |
| Gene ID | Type | Classification |
|---|---|---|
| Msa1320630 | TF | NF-YA |
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1185990 | Msa1320630 | 0.897885 | 9.103651e-77 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1320630 | MtrunA17_Chr8g0352251 | 94.158 | 291 | 16 | 1 | 1 | 290 | 1 | 291 | 0.0 | 564 |
| Msa1320630 | MtrunA17_Chr3g0103391 | 36.991 | 319 | 140 | 11 | 21 | 302 | 20 | 314 | 1.20e-45 | 157 |
| Msa1320630 | MtrunA17_Chr2g0292411 | 71.111 | 90 | 26 | 0 | 127 | 216 | 86 | 175 | 1.77e-36 | 130 |
| Msa1320630 | MtrunA17_Chr8g0343451 | 43.415 | 205 | 92 | 9 | 81 | 282 | 95 | 278 | 1.22e-34 | 128 |
| Msa1320630 | MtrunA17_Chr2g0300261 | 48.000 | 150 | 70 | 4 | 114 | 258 | 33 | 179 | 4.45e-34 | 124 |
| Msa1320630 | MtrunA17_Chr2g0329811 | 51.613 | 124 | 53 | 2 | 117 | 233 | 144 | 267 | 1.76e-31 | 120 |
| Msa1320630 | MtrunA17_Chr7g0267581 | 45.752 | 153 | 58 | 6 | 72 | 219 | 99 | 231 | 2.45e-30 | 117 |
| Msa1320630 | MtrunA17_Chr1g0177091 | 54.206 | 107 | 36 | 3 | 109 | 213 | 128 | 223 | 3.13e-28 | 111 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1320630 | AT3G20910.1 | 50.340 | 147 | 70 | 2 | 98 | 241 | 108 | 254 | 9.45e-41 | 144 |
| Msa1320630 | AT5G12840.4 | 40.000 | 240 | 103 | 8 | 29 | 238 | 27 | 255 | 6.52e-40 | 141 |
| Msa1320630 | AT5G12840.2 | 40.000 | 240 | 103 | 8 | 29 | 238 | 27 | 255 | 6.52e-40 | 141 |
| Msa1320630 | AT5G12840.5 | 51.095 | 137 | 66 | 1 | 103 | 238 | 120 | 256 | 7.59e-40 | 141 |
| Msa1320630 | AT5G12840.3 | 51.095 | 137 | 66 | 1 | 103 | 238 | 120 | 256 | 7.59e-40 | 141 |
| Msa1320630 | AT5G12840.1 | 51.095 | 137 | 66 | 1 | 103 | 238 | 120 | 256 | 7.59e-40 | 141 |
| Msa1320630 | AT1G30500.2 | 43.976 | 166 | 77 | 4 | 79 | 236 | 33 | 190 | 1.27e-32 | 120 |
| Msa1320630 | AT1G30500.1 | 43.373 | 166 | 74 | 4 | 79 | 236 | 33 | 186 | 1.25e-31 | 117 |
| Msa1320630 | AT2G34720.1 | 37.949 | 195 | 98 | 5 | 66 | 252 | 8 | 187 | 2.11e-31 | 117 |
| Msa1320630 | AT1G72830.1 | 53.448 | 116 | 49 | 3 | 115 | 225 | 137 | 252 | 9.96e-31 | 119 |
| Msa1320630 | AT5G06510.1 | 34.348 | 230 | 104 | 8 | 30 | 240 | 13 | 214 | 1.85e-30 | 116 |
| Msa1320630 | AT5G06510.5 | 34.348 | 230 | 104 | 8 | 30 | 240 | 13 | 214 | 1.85e-30 | 116 |
| Msa1320630 | AT5G06510.2 | 34.348 | 230 | 104 | 8 | 30 | 240 | 13 | 214 | 1.85e-30 | 116 |
| Msa1320630 | AT5G06510.6 | 34.348 | 230 | 104 | 8 | 30 | 240 | 13 | 214 | 1.85e-30 | 116 |
| Msa1320630 | AT1G17590.3 | 57.143 | 105 | 37 | 4 | 115 | 216 | 135 | 234 | 4.16e-30 | 117 |
| Msa1320630 | AT1G17590.2 | 57.143 | 105 | 37 | 4 | 115 | 216 | 135 | 234 | 4.16e-30 | 117 |
| Msa1320630 | AT1G17590.4 | 57.143 | 105 | 37 | 4 | 115 | 216 | 135 | 234 | 4.16e-30 | 117 |
| Msa1320630 | AT1G17590.1 | 57.143 | 105 | 37 | 4 | 115 | 216 | 135 | 234 | 4.16e-30 | 117 |
| Msa1320630 | AT2G34720.2 | 43.836 | 146 | 63 | 3 | 114 | 252 | 19 | 152 | 8.45e-30 | 111 |
| Msa1320630 | AT2G34720.3 | 43.836 | 146 | 63 | 3 | 114 | 252 | 19 | 152 | 8.45e-30 | 111 |
| Msa1320630 | AT1G72830.2 | 52.991 | 117 | 49 | 4 | 115 | 225 | 137 | 253 | 5.31e-29 | 114 |
| Msa1320630 | AT1G54160.1 | 65.000 | 80 | 27 | 1 | 143 | 221 | 166 | 245 | 8.04e-29 | 113 |
| Msa1320630 | AT5G06510.4 | 48.000 | 125 | 47 | 4 | 119 | 240 | 10 | 119 | 1.61e-28 | 108 |
| Msa1320630 | AT5G06510.7 | 48.000 | 125 | 47 | 4 | 119 | 240 | 10 | 119 | 1.61e-28 | 108 |
| Msa1320630 | AT3G14020.2 | 57.143 | 98 | 40 | 2 | 126 | 221 | 141 | 238 | 2.73e-28 | 111 |
| Msa1320630 | AT3G14020.1 | 57.143 | 98 | 40 | 2 | 126 | 221 | 141 | 238 | 2.73e-28 | 111 |
| Msa1320630 | AT3G05690.2 | 32.331 | 266 | 140 | 9 | 9 | 254 | 33 | 278 | 2.81e-28 | 112 |
| Msa1320630 | AT3G05690.1 | 34.426 | 244 | 120 | 9 | 31 | 254 | 18 | 241 | 3.64e-28 | 110 |
| Msa1320630 | AT5G06510.3 | 48.000 | 125 | 47 | 4 | 119 | 240 | 56 | 165 | 4.53e-28 | 108 |
| Msa1320630 | AT1G72830.3 | 54.023 | 87 | 38 | 1 | 141 | 225 | 141 | 227 | 3.69e-22 | 95.1 |
Find 108 sgRNAs with CRISPR-Local
Find 248 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTCTCCAATCATCAGTTTC+TGG | 0.147047 | 8_4:-25296686 | None:intergenic |
| TTCTCTTACATAAAACTAAT+TGG | 0.164762 | 8_4:+25295772 | Msa1320630:five_prime_UTR |
| TCAATTAAATTAGGTAATTA+AGG | 0.204465 | 8_4:+25294891 | Msa1320630:five_prime_UTR |
| CCAAATTGTGCATTTGAATA+AGG | 0.207731 | 8_4:-25297581 | None:intergenic |
| GGTCAAATCTTGAATGCTTA+TGG | 0.216756 | 8_4:+25297602 | Msa1320630:CDS |
| TCTCTTTCTATGTTATTATT+AGG | 0.225399 | 8_4:-25295986 | None:intergenic |
| ACATTACACTCAATTAAATT+AGG | 0.234192 | 8_4:+25294882 | Msa1320630:five_prime_UTR |
| CCTTATTCAAATGCACAATT+TGG | 0.274102 | 8_4:+25297581 | Msa1320630:CDS |
| ACAAGTTCCGTGTGCGAATT+CGG | 0.296355 | 8_4:-25297460 | None:intergenic |
| CAGCCTTGGTGGCTTGAAAA+TGG | 0.313297 | 8_4:+25296758 | Msa1320630:CDS |
| AAACAGGAGGGTGACTTCTT+TGG | 0.313426 | 8_4:+25299717 | Msa1320630:CDS |
| GATTCTGCTGCTCTAGAAAA+AGG | 0.320183 | 8_4:+25299546 | Msa1320630:CDS |
| AGGCTGATGATGAGAGTAAA+TGG | 0.326121 | 8_4:-25296741 | None:intergenic |
| TCTTCAGCTGATCAGATAAA+TGG | 0.327548 | 8_4:+25296791 | Msa1320630:CDS |
| ACAGGGCCTGTTTGATGTTT+CGG | 0.328192 | 8_4:-25297402 | None:intergenic |
| GAACTTACTATTGGAAGGTT+TGG | 0.343696 | 8_4:-25296049 | None:intergenic |
| TTGACAAAGCTCATATTGTT+AGG | 0.344917 | 8_4:+25295527 | Msa1320630:five_prime_UTR |
| AGTAAAGAAAATGAGATAAG+AGG | 0.345654 | 8_4:+25294829 | Msa1320630:five_prime_UTR |
| AGTACAACATAAAATATATA+TGG | 0.350169 | 8_4:-25294731 | None:intergenic |
| CTCAATATTCTAATTTCTCT+TGG | 0.353738 | 8_4:-25295141 | None:intergenic |
| TGTCACACATTCAGAGCCTT+TGG | 0.376234 | 8_4:+25296829 | Msa1320630:CDS |
| TATCAATGGCAACTCATTCT+TGG | 0.382555 | 8_4:+25299933 | Msa1320630:CDS |
| CTGATCAGCTGAAGATGGTT+TGG | 0.384238 | 8_4:-25296783 | None:intergenic |
| TTCCACACATTATCTTTGAA+TGG | 0.398827 | 8_4:+25300182 | Msa1320630:three_prime_UTR |
| GCATTCTAGCATGATGCATT+TGG | 0.399038 | 8_4:-25298923 | None:intergenic |
| TTGAGAAGGGCAAGGGGAAA+TGG | 0.400323 | 8_4:+25299486 | Msa1320630:CDS |
| GAAAGTTATTAAAGTTAGAA+AGG | 0.407898 | 8_4:+25299049 | Msa1320630:CDS |
| TGAGCCTTGATTCTCATTGT+TGG | 0.412750 | 8_4:-25299595 | None:intergenic |
| TCATCAGTTTCTGGTTTCCC+TGG | 0.428859 | 8_4:-25296677 | None:intergenic |
| TTCACAGGCAAATGGAAAAC+AGG | 0.431715 | 8_4:+25299701 | Msa1320630:CDS |
| AAAAGCTGTGAAAGGATGCC+AGG | 0.439397 | 8_4:+25296659 | Msa1320630:exon |
| ACTCTCATCATCAGCCTTGG+TGG | 0.446091 | 8_4:+25296747 | Msa1320630:CDS |
| TAATGTGTGGAAGGATAGAT+AGG | 0.448960 | 8_4:-25300171 | None:intergenic |
| AATTCGCACACGGAACTTGT+TGG | 0.449001 | 8_4:+25297463 | Msa1320630:CDS |
| ATCAGTTACCATGATGGAAA+TGG | 0.459023 | 8_4:+25299660 | Msa1320630:CDS |
| TGTAAAGAGAAACACAAGTA+AGG | 0.460873 | 8_4:-25300022 | None:intergenic |
| TGGTAAATGTGGTTGAGGAC+AGG | 0.464978 | 8_4:-25297420 | None:intergenic |
| GCAAAGGTCTTTGTCCTTGT+CGG | 0.465491 | 8_4:-25294939 | None:intergenic |
| TTTGATGTTTCGGTGTTCCT+TGG | 0.466007 | 8_4:-25297392 | None:intergenic |
| GCAGCACATGCACAAAATGC+AGG | 0.482353 | 8_4:+25299629 | Msa1320630:CDS |
| TTTATCTGATCAGCTGAAGA+TGG | 0.483259 | 8_4:-25296788 | None:intergenic |
| CTATGTCATTCACAGGCAAA+TGG | 0.486227 | 8_4:+25299693 | Msa1320630:CDS |
| TTTACTCTCATCATCAGCCT+TGG | 0.487165 | 8_4:+25296744 | Msa1320630:CDS |
| GTAAAGAAAATGAGATAAGA+GGG | 0.487584 | 8_4:+25294830 | Msa1320630:five_prime_UTR |
| GGAAACCAGAAACTGATGAT+TGG | 0.490368 | 8_4:+25296681 | Msa1320630:CDS |
| AACAATACTGGTGCAACATC+GGG | 0.490937 | 8_4:+25299570 | Msa1320630:CDS |
| TCTCAAAGCATGTTGGTGAC+GGG | 0.492087 | 8_4:-25299469 | None:intergenic |
| TTCTCAAAGCATGTTGGTGA+CGG | 0.494518 | 8_4:-25299470 | None:intergenic |
| TGACGGGATTCATGAAGATA+TGG | 0.495855 | 8_4:-25299453 | None:intergenic |
| CTCATGATGCTGTATATCAA+TGG | 0.497051 | 8_4:+25299919 | Msa1320630:CDS |
| TACTAGGAAACACAGGGATA+AGG | 0.500434 | 8_4:+25294750 | Msa1320630:five_prime_UTR |
| CCGTGTGCGAATTCGGATCA+AGG | 0.504060 | 8_4:-25297453 | None:intergenic |
| CTTAAACAATGTTTCTGTTG+AGG | 0.506583 | 8_4:+25294785 | Msa1320630:five_prime_UTR |
| ATCCATGGTAAATGTGGTTG+AGG | 0.506757 | 8_4:-25297425 | None:intergenic |
| GGAACACCGAAACATCAAAC+AGG | 0.507642 | 8_4:+25297396 | Msa1320630:CDS |
| TAGAAGAACTTACTATTGGA+AGG | 0.510837 | 8_4:-25296054 | None:intergenic |
| GAGAGAATATAAGAATATCA+AGG | 0.514043 | 8_4:-25295925 | None:intergenic |
| TATATTGCAGGTGAAGATGA+AGG | 0.518732 | 8_4:+25299880 | Msa1320630:intron |
| TTCAACATCAGTTACCATGA+TGG | 0.518987 | 8_4:+25299654 | Msa1320630:CDS |
| GGTAAATGTGGTTGAGGACA+GGG | 0.519708 | 8_4:-25297419 | None:intergenic |
| GTCAATGCAAAGCAGTATCA+TGG | 0.520607 | 8_4:+25298981 | Msa1320630:CDS |
| GAGAATAAAGCAAAGTGAGC+AGG | 0.523124 | 8_4:+25296703 | Msa1320630:CDS |
| TACAGCACTATGTCATTCAC+AGG | 0.523214 | 8_4:+25299686 | Msa1320630:CDS |
| CTGTAAAGCCATTTCCATCA+TGG | 0.526707 | 8_4:-25299668 | None:intergenic |
| CAACAATACTGGTGCAACAT+CGG | 0.530920 | 8_4:+25299569 | Msa1320630:CDS |
| TGCTTTGCATTGACATACAC+AGG | 0.531370 | 8_4:-25298972 | None:intergenic |
| ACGAAGACAGTCGCGCGCTA+AGG | 0.538100 | 8_4:+25299013 | Msa1320630:CDS |
| TTGCCCTTCTCAAAGCATGT+TGG | 0.541677 | 8_4:-25299476 | None:intergenic |
| TGAGCTTTGTCAATTGACAT+AGG | 0.543476 | 8_4:-25295517 | None:intergenic |
| GTAAAGAGAAACACAAGTAA+GGG | 0.546239 | 8_4:-25300021 | None:intergenic |
| TTCCATTCAAAGATAATGTG+TGG | 0.546489 | 8_4:-25300184 | None:intergenic |
| CGGATCAAGGTGCTTATCCA+TGG | 0.548060 | 8_4:-25297440 | None:intergenic |
| CACACACAACTGCATCGTAA+AGG | 0.548223 | 8_4:-25295557 | None:intergenic |
| CTCAGGTGGGGACGTTGCCA+AGG | 0.551688 | 8_4:+25297375 | Msa1320630:intron |
| TGCTTATGGACAACAAGCTA+TGG | 0.551820 | 8_4:+25297616 | Msa1320630:CDS |
| ATTCAAAGATAATGTGTGGA+AGG | 0.559373 | 8_4:-25300180 | None:intergenic |
| TTTGCCGCTTAAAATGGAAG+AGG | 0.565386 | 8_4:+25298947 | Msa1320630:CDS |
| TCAGAAGCTGAGTTGCATTG+AGG | 0.568541 | 8_4:-25296023 | None:intergenic |
| TGATATACAGCATCATGAGT+TGG | 0.568591 | 8_4:-25299915 | None:intergenic |
| ACATGCTTTGAGAAGGGCAA+GGG | 0.570857 | 8_4:+25299479 | Msa1320630:CDS |
| GTCACCAACATGCTTTGAGA+AGG | 0.572667 | 8_4:+25299472 | Msa1320630:CDS |
| CTTTCTTTAACTGATAACTC+AGG | 0.574168 | 8_4:+25296863 | Msa1320630:CDS |
| GGTACCAACAATGAGAATCA+AGG | 0.578464 | 8_4:+25299591 | Msa1320630:CDS |
| TATGTTGTACTAGGAAACAC+AGG | 0.585715 | 8_4:+25294743 | Msa1320630:five_prime_UTR |
| TTATCAGTTAAAGAAAGTGA+AGG | 0.586779 | 8_4:-25296857 | None:intergenic |
| CATGCTTTGAGAAGGGCAAG+GGG | 0.591440 | 8_4:+25299480 | Msa1320630:CDS |
| ACAGCATCATGAGTTGGATG+AGG | 0.597562 | 8_4:-25299909 | None:intergenic |
| TCACTTGTATGAATCTGAGT+TGG | 0.601238 | 8_4:-25295027 | None:intergenic |
| ATATTGCAGGTGAAGATGAA+GGG | 0.607151 | 8_4:+25299881 | Msa1320630:intron |
| TCACCAACATGCTTTGAGAA+GGG | 0.609839 | 8_4:+25299473 | Msa1320630:CDS |
| TGATGAGAGTAAATGGAAGA+TGG | 0.612845 | 8_4:-25296734 | None:intergenic |
| CAGCACATGCACAAAATGCA+GGG | 0.616147 | 8_4:+25299630 | Msa1320630:CDS |
| TAAAGAGAAACACAAGTAAG+GGG | 0.628270 | 8_4:-25300020 | None:intergenic |
| CATGACGTGTACCATGCCAC+TGG | 0.628689 | 8_4:-25299984 | None:intergenic |
| AAAGCTGTGAAAGGATGCCA+GGG | 0.629084 | 8_4:+25296660 | Msa1320630:exon |
| AACATGCTTTGAGAAGGGCA+AGG | 0.629479 | 8_4:+25299478 | Msa1320630:CDS |
| ACAGGCAAATGGAAAACAGG+AGG | 0.631076 | 8_4:+25299704 | Msa1320630:CDS |
| CTAAGTTAGTTAGACTACAG+TGG | 0.639102 | 8_4:+25299956 | Msa1320630:CDS |
| GTCCTCAACCACATTTACCA+TGG | 0.640828 | 8_4:+25297423 | Msa1320630:CDS |
| GAAAGTGAAGGAGAAACCAA+AGG | 0.644044 | 8_4:-25296845 | None:intergenic |
| CAGTGGTGAAACCAGTGGCA+TGG | 0.644557 | 8_4:+25299973 | Msa1320630:exon |
| CCTTGATCCGAATTCGCACA+CGG | 0.646140 | 8_4:+25297453 | Msa1320630:CDS |
| CAGGCAAATGGAAAACAGGA+GGG | 0.651426 | 8_4:+25299705 | Msa1320630:CDS |
| AGAAGGGCAAGGGGAAATGG+CGG | 0.651466 | 8_4:+25299489 | Msa1320630:CDS |
| GTGCTTATCCATGGTAAATG+TGG | 0.665524 | 8_4:-25297431 | None:intergenic |
| GACTACAGTGGTGAAACCAG+TGG | 0.694508 | 8_4:+25299968 | Msa1320630:exon |
| AAGTAAGGGGAGAACGAACG+AGG | 0.701281 | 8_4:-25300007 | None:intergenic |
| ATGTTGTACTAGGAAACACA+GGG | 0.709856 | 8_4:+25294744 | Msa1320630:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTAATATTTAAAAAAAAT+AGG | - | chr8_4:25295857-25295876 | None:intergenic | 0.0% |
| !!! | TAAATATTGTTGTATTTTTT+TGG | - | chr8_4:25295248-25295267 | None:intergenic | 10.0% |
| !! | GAAAAAAAACTAATATAAAA+AGG | - | chr8_4:25295662-25295681 | None:intergenic | 10.0% |
| !! | AAAGTAATTTAAATTTCTAT+CGG | - | chr8_4:25298023-25298042 | None:intergenic | 10.0% |
| !!! | TGTAATATGTATTTTTATTT+TGG | + | chr8_4:25298384-25298403 | Msa1320630:intron | 10.0% |
| !!! | TATATATTTTATGTTGTACT+AGG | + | chr8_4:25294734-25294753 | Msa1320630:five_prime_UTR | 15.0% |
| !! | TCAATTAAATTAGGTAATTA+AGG | + | chr8_4:25294891-25294910 | Msa1320630:five_prime_UTR | 15.0% |
| !!! | AAGGTTACATATTTTTATTT+TGG | + | chr8_4:25294910-25294929 | Msa1320630:five_prime_UTR | 15.0% |
| !!! | AACAATATTTAATCTTTTGA+AGG | + | chr8_4:25295257-25295276 | Msa1320630:five_prime_UTR | 15.0% |
| !!! | TCAGTAAAAAAATTGTTATT+TGG | + | chr8_4:25295584-25295603 | Msa1320630:five_prime_UTR | 15.0% |
| !!! | TTTATTATGTTTTTGTGATT+TGG | + | chr8_4:25296605-25296624 | Msa1320630:intron | 15.0% |
| !!! | TATTAAGTTGACATAATTTT+AGG | + | chr8_4:25296998-25297017 | Msa1320630:intron | 15.0% |
| !!! | AATATTTGTAGTTAGTTTTT+CGG | + | chr8_4:25298475-25298494 | Msa1320630:intron | 15.0% |
| !!! | TTTTTTCATCATTGATTATA+AGG | - | chr8_4:25299090-25299109 | None:intergenic | 15.0% |
| !! | TATAATCAATGATGAAAAAA+TGG | + | chr8_4:25299090-25299109 | Msa1320630:intron | 15.0% |
| !! | ATAATATCTTAATTGTATCT+TGG | + | chr8_4:25299250-25299269 | Msa1320630:intron | 15.0% |
| !!! | TTTCTTATTTAATGAAGATT+AGG | + | chr8_4:25299342-25299361 | Msa1320630:intron | 15.0% |
| !! | AATAAAAGAAAAAATCACTT+TGG | + | chr8_4:25300070-25300089 | Msa1320630:three_prime_UTR | 15.0% |
| !! | ACATTACACTCAATTAAATT+AGG | + | chr8_4:25294882-25294901 | Msa1320630:five_prime_UTR | 20.0% |
| !!! | GAGAATTTTATCATCTATTA+CGG | + | chr8_4:25295279-25295298 | Msa1320630:five_prime_UTR | 20.0% |
| !! | TTCTCTTACATAAAACTAAT+TGG | + | chr8_4:25295772-25295791 | Msa1320630:five_prime_UTR | 20.0% |
| !! | TCTCTTTCTATGTTATTATT+AGG | - | chr8_4:25295989-25296008 | None:intergenic | 20.0% |
| !! | TTGAATCAAAACTATAGATT+TGG | - | chr8_4:25296108-25296127 | None:intergenic | 20.0% |
| !!! | TTGTTTTCCTTTATGAAAAA+TGG | + | chr8_4:25296173-25296192 | Msa1320630:intron | 20.0% |
| !!! | TGTTTTCCTTTATGAAAAAT+GGG | + | chr8_4:25296174-25296193 | Msa1320630:intron | 20.0% |
| !!! | AAAATTCCCATTTTTCATAA+AGG | - | chr8_4:25296183-25296202 | None:intergenic | 20.0% |
| !!! | TTTTCTTTTAAGTATGCATT+TGG | + | chr8_4:25296199-25296218 | Msa1320630:intron | 20.0% |
| !! | TTCATTCAAGTAAATGAAAA+AGG | + | chr8_4:25296265-25296284 | Msa1320630:intron | 20.0% |
| !! | TCATTCAAGTAAATGAAAAA+GGG | + | chr8_4:25296266-25296285 | Msa1320630:intron | 20.0% |
| !! | TTCAATGTAATTATATGTGT+CGG | + | chr8_4:25296467-25296486 | Msa1320630:intron | 20.0% |
| !! | TGAACAATCATAGTAAATAA+GGG | - | chr8_4:25297107-25297126 | None:intergenic | 20.0% |
| !! | ATGAACAATCATAGTAAATA+AGG | - | chr8_4:25297108-25297127 | None:intergenic | 20.0% |
| !! | TTGTATATCAAAAGTTCAAT+TGG | - | chr8_4:25297169-25297188 | None:intergenic | 20.0% |
| !! | CATGAAAAAAAATGTCTTAT+TGG | + | chr8_4:25297351-25297370 | Msa1320630:intron | 20.0% |
| !! | TTGGAAAAATGTAATGTTAA+AGG | - | chr8_4:25297505-25297524 | None:intergenic | 20.0% |
| !! | CCTATAAAAATAAAAAGTCT+TGG | - | chr8_4:25298800-25298819 | None:intergenic | 20.0% |
| !!! | CCAAGACTTTTTATTTTTAT+AGG | + | chr8_4:25298797-25298816 | Msa1320630:intron | 20.0% |
| !! | AAGAATATTAAAAGACTGAT+AGG | - | chr8_4:25298823-25298842 | None:intergenic | 20.0% |
| !! | GAAAGTTATTAAAGTTAGAA+AGG | + | chr8_4:25299049-25299068 | Msa1320630:CDS | 20.0% |
| !! | TTCTTAATATAAAACTCTTG+AGG | - | chr8_4:25299214-25299233 | None:intergenic | 20.0% |
| !! | TTTATAATTTATACCTGTTG+CGG | - | chr8_4:25299793-25299812 | None:intergenic | 20.0% |
| ! | AGTAAAGAAAATGAGATAAG+AGG | + | chr8_4:25294829-25294848 | Msa1320630:five_prime_UTR | 25.0% |
| ! | GTAAAGAAAATGAGATAAGA+GGG | + | chr8_4:25294830-25294849 | Msa1320630:five_prime_UTR | 25.0% |
| ! | CTCAATATTCTAATTTCTCT+TGG | - | chr8_4:25295144-25295163 | None:intergenic | 25.0% |
| ! | GAGAGAATATAAGAATATCA+AGG | - | chr8_4:25295928-25295947 | None:intergenic | 25.0% |
| !! | TCTTTAGAAGAACTTACTAT+TGG | - | chr8_4:25296061-25296080 | None:intergenic | 25.0% |
| !! | ATTTGACCACAATTTTGTAA+AGG | + | chr8_4:25296128-25296147 | Msa1320630:intron | 25.0% |
| !! | TTTGACCACAATTTTGTAAA+GGG | + | chr8_4:25296129-25296148 | Msa1320630:intron | 25.0% |
| !!! | ATCACTTTGTTTTCATACTT+TGG | + | chr8_4:25296299-25296318 | Msa1320630:intron | 25.0% |
| ! | TGATTTCCTCAAATTATTAG+TGG | - | chr8_4:25296442-25296461 | None:intergenic | 25.0% |
| !!! | GAATTTGTTGTATCTTTGTT+TGG | + | chr8_4:25296627-25296646 | Msa1320630:intron | 25.0% |
| ! | TTATCAGTTAAAGAAAGTGA+AGG | - | chr8_4:25296860-25296879 | None:intergenic | 25.0% |
| ! | AAACAAGAAAAAGTTTGAAG+AGG | - | chr8_4:25296905-25296924 | None:intergenic | 25.0% |
| ! | TTAAGATGAAAAAGTCCAAT+TGG | - | chr8_4:25297056-25297075 | None:intergenic | 25.0% |
| ! | AACAATCATAGTAAATAAGG+GGG | - | chr8_4:25297105-25297124 | None:intergenic | 25.0% |
| ! | GAACAATCATAGTAAATAAG+GGG | - | chr8_4:25297106-25297125 | None:intergenic | 25.0% |
| ! | ACTATGATTGTTCATAATCA+AGG | + | chr8_4:25297113-25297132 | Msa1320630:intron | 25.0% |
| ! | CTATGATTGTTCATAATCAA+GGG | + | chr8_4:25297114-25297133 | Msa1320630:intron | 25.0% |
| ! | ATAATCAAGGGAAACTTATT+TGG | + | chr8_4:25297126-25297145 | Msa1320630:intron | 25.0% |
| ! | ATATACAAGTAACTTCTTGA+AGG | + | chr8_4:25297181-25297200 | Msa1320630:intron | 25.0% |
| !!! | CTCTTTTTTAATCTATAGAC+CGG | + | chr8_4:25297698-25297717 | Msa1320630:intron | 25.0% |
| ! | AATAAAAAGAAGGTAAGTTC+CGG | - | chr8_4:25297720-25297739 | None:intergenic | 25.0% |
| !! | CTTACCTTCTTTTTATTCAT+TGG | + | chr8_4:25297723-25297742 | Msa1320630:intron | 25.0% |
| ! | ATTTGTTTACTTCTTGTGTT+TGG | + | chr8_4:25297753-25297772 | Msa1320630:intron | 25.0% |
| ! | ATATTCATTTATTCCTTGCA+AGG | + | chr8_4:25297849-25297868 | Msa1320630:intron | 25.0% |
| !!! | CGGATATTTCTAAAGTATAT+TGG | - | chr8_4:25298003-25298022 | None:intergenic | 25.0% |
| ! | AAAATGTATCCGAGAAATAT+CGG | - | chr8_4:25298060-25298079 | None:intergenic | 25.0% |
| !! | ATAAGAATATGTGCTGATAT+AGG | + | chr8_4:25298192-25298211 | Msa1320630:intron | 25.0% |
| ! | TACACATTCACATTGTTTAT+TGG | - | chr8_4:25298319-25298338 | None:intergenic | 25.0% |
| ! | AAAAAAAGGAAAAGAAAGAG+AGG | - | chr8_4:25298775-25298794 | None:intergenic | 25.0% |
| ! | AAAAAGTCTTGGACAAAAAA+AGG | - | chr8_4:25298789-25298808 | None:intergenic | 25.0% |
| ! | TATCATATTTGTGTATCTGT+TGG | + | chr8_4:25299141-25299160 | Msa1320630:intron | 25.0% |
| !!! | GCTTAATCTTTTAGAAAAGT+TGG | - | chr8_4:25299176-25299195 | None:intergenic | 25.0% |
| !! | TTCTAAAAGATTAAGCAGTT+TGG | + | chr8_4:25299180-25299199 | Msa1320630:intron | 25.0% |
| !!! | AATATAGAAAGCATTCCTAA+GGG | - | chr8_4:25299300-25299319 | None:intergenic | 25.0% |
| !!! | AAATATAGAAAGCATTCCTA+AGG | - | chr8_4:25299301-25299320 | None:intergenic | 25.0% |
| ! | TATGATCAATTCTACACAAA+TGG | - | chr8_4:25299404-25299423 | None:intergenic | 25.0% |
| ! | GGTAAAAAGATTGAATCAAA+TGG | + | chr8_4:25299738-25299757 | Msa1320630:CDS | 25.0% |
| ! | CTTAAACAATGTTTCTGTTG+AGG | + | chr8_4:25294785-25294804 | Msa1320630:five_prime_UTR | 30.0% |
| ! | CAATGATGTGTTGACAAAAA+TGG | - | chr8_4:25294857-25294876 | None:intergenic | 30.0% |
| ! | TTATTTTCTACTTCACGCAA+AGG | - | chr8_4:25294958-25294977 | None:intergenic | 30.0% |
| TTGACAAAGCTCATATTGTT+AGG | + | chr8_4:25295527-25295546 | Msa1320630:five_prime_UTR | 30.0% | |
| TAGAAGAACTTACTATTGGA+AGG | - | chr8_4:25296057-25296076 | None:intergenic | 30.0% | |
| AAACACCCTTTACAAAATTG+TGG | - | chr8_4:25296137-25296156 | None:intergenic | 30.0% | |
| AGCTTATCTAAGTAAAAGCA+CGG | + | chr8_4:25296376-25296395 | Msa1320630:intron | 30.0% | |
| ! | TGTATCTTTGTTTGGTTGAA+AGG | + | chr8_4:25296635-25296654 | Msa1320630:intron | 30.0% |
| CTTTCTTTAACTGATAACTC+AGG | + | chr8_4:25296863-25296882 | Msa1320630:CDS | 30.0% | |
| ! | ATTTTAGGCCATTTGCAATT+TGG | + | chr8_4:25297013-25297032 | Msa1320630:intron | 30.0% |
| TCTAGATTTGTCAAACCAAT+TGG | + | chr8_4:25297038-25297057 | Msa1320630:intron | 30.0% | |
| ! | AAAAATGTCTTATTGGTCTC+AGG | + | chr8_4:25297358-25297377 | Msa1320630:intron | 30.0% |
| ATCATGATGTGTACATATCT+TGG | - | chr8_4:25297524-25297543 | None:intergenic | 30.0% | |
| ! | TGATGAACTTTTGTCATATG+TGG | + | chr8_4:25297540-25297559 | Msa1320630:intron | 30.0% |
| CCAAATTGTGCATTTGAATA+AGG | - | chr8_4:25297584-25297603 | None:intergenic | 30.0% | |
| CCTTATTCAAATGCACAATT+TGG | + | chr8_4:25297581-25297600 | Msa1320630:CDS | 30.0% | |
| CTTGCCAATGAATAAAAAGA+AGG | - | chr8_4:25297730-25297749 | None:intergenic | 30.0% | |
| !! | TTTCTTCAGTTGGTAAGAAA+GGG | - | chr8_4:25298085-25298104 | None:intergenic | 30.0% |
| ! | AATATGTGCTGATATAGGTA+GGG | + | chr8_4:25298197-25298216 | Msa1320630:intron | 30.0% |
| TATCTGTACTCTTATGTATC+CGG | + | chr8_4:25298350-25298369 | Msa1320630:intron | 30.0% | |
| ATATTACACACAAAGAAACC+CGG | - | chr8_4:25298372-25298391 | None:intergenic | 30.0% | |
| ACGATTACAATGTACTAACA+TGG | - | chr8_4:25298598-25298617 | None:intergenic | 30.0% | |
| GTATCTTTAACTGTATGTCT+TGG | + | chr8_4:25298634-25298653 | Msa1320630:intron | 30.0% | |
| AAAGATGAATCTTGTGCAAA+AGG | - | chr8_4:25298680-25298699 | None:intergenic | 30.0% | |
| CACAAGATTCATCTTTATGA+TGG | + | chr8_4:25298684-25298703 | Msa1320630:intron | 30.0% | |
| AAGATTAAGCAGTTTGGAAA+AGG | + | chr8_4:25299186-25299205 | Msa1320630:intron | 30.0% | |
| ATTGTATCTTGGATCAATCT+AGG | + | chr8_4:25299261-25299280 | Msa1320630:intron | 30.0% | |
| TTGTATCTTGGATCAATCTA+GGG | + | chr8_4:25299262-25299281 | Msa1320630:intron | 30.0% | |
| ATGTAAGAATTGTCAGCATA+TGG | - | chr8_4:25299852-25299871 | None:intergenic | 30.0% | |
| ACATGTCTTACATATATTGC+AGG | + | chr8_4:25299868-25299887 | Msa1320630:intron | 30.0% | |
| TAAAGAGAAACACAAGTAAG+GGG | - | chr8_4:25300023-25300042 | None:intergenic | 30.0% | |
| GTAAAGAGAAACACAAGTAA+GGG | - | chr8_4:25300024-25300043 | None:intergenic | 30.0% | |
| TGTAAAGAGAAACACAAGTA+AGG | - | chr8_4:25300025-25300044 | None:intergenic | 30.0% | |
| ATTCAAAGATAATGTGTGGA+AGG | - | chr8_4:25300183-25300202 | None:intergenic | 30.0% | |
| TTCCACACATTATCTTTGAA+TGG | + | chr8_4:25300182-25300201 | Msa1320630:three_prime_UTR | 30.0% | |
| TTCCATTCAAAGATAATGTG+TGG | - | chr8_4:25300187-25300206 | None:intergenic | 30.0% | |
| TATGTTGTACTAGGAAACAC+AGG | + | chr8_4:25294743-25294762 | Msa1320630:five_prime_UTR | 35.0% | |
| ATGTTGTACTAGGAAACACA+GGG | + | chr8_4:25294744-25294763 | Msa1320630:five_prime_UTR | 35.0% | |
| !!! | TATTTTGGTTTTCTCCGACA+AGG | + | chr8_4:25294925-25294944 | Msa1320630:five_prime_UTR | 35.0% |
| TCACTTGTATGAATCTGAGT+TGG | - | chr8_4:25295030-25295049 | None:intergenic | 35.0% | |
| ! | TGAGCTTTGTCAATTGACAT+AGG | - | chr8_4:25295520-25295539 | None:intergenic | 35.0% |
| GAACTTACTATTGGAAGGTT+TGG | - | chr8_4:25296052-25296071 | None:intergenic | 35.0% | |
| !! | TATGCATTTGGTTTGCAACA+AGG | + | chr8_4:25296211-25296230 | Msa1320630:intron | 35.0% |
| ! | TCTAAGTAAAAGCACGGATA+CGG | + | chr8_4:25296382-25296401 | Msa1320630:intron | 35.0% |
| CACACACCACTAATAATTTG+AGG | + | chr8_4:25296433-25296452 | Msa1320630:intron | 35.0% | |
| TGAAAGGAAAAAGCTGTGAA+AGG | + | chr8_4:25296651-25296670 | Msa1320630:intron | 35.0% | |
| ATTCTCCAATCATCAGTTTC+TGG | - | chr8_4:25296689-25296708 | None:intergenic | 35.0% | |
| TGATGAGAGTAAATGGAAGA+TGG | - | chr8_4:25296737-25296756 | None:intergenic | 35.0% | |
| TTTATCTGATCAGCTGAAGA+TGG | - | chr8_4:25296791-25296810 | None:intergenic | 35.0% | |
| TCTTCAGCTGATCAGATAAA+TGG | + | chr8_4:25296791-25296810 | Msa1320630:CDS | 35.0% | |
| ! | TTCCTTTTGCATACACTTCT+TGG | + | chr8_4:25296946-25296965 | Msa1320630:intron | 35.0% |
| TCTAGATGCCAAATTGCAAA+TGG | - | chr8_4:25297024-25297043 | None:intergenic | 35.0% | |
| ! | CTTTTGTCATATGTGGTTAC+AGG | + | chr8_4:25297547-25297566 | Msa1320630:intron | 35.0% |
| GGTCAAATCTTGAATGCTTA+TGG | + | chr8_4:25297602-25297621 | Msa1320630:CDS | 35.0% | |
| TAATATGTGATGTCCTTGCA+AGG | - | chr8_4:25297865-25297884 | None:intergenic | 35.0% | |
| ATACTTCCACCGATATTTCT+CGG | + | chr8_4:25298048-25298067 | Msa1320630:intron | 35.0% | |
| !! | GTTTCTTCAGTTGGTAAGAA+AGG | - | chr8_4:25298086-25298105 | None:intergenic | 35.0% |
| !! | ATGACAGTTGTTTCTTCAGT+TGG | - | chr8_4:25298095-25298114 | None:intergenic | 35.0% |
| ! | GAATATGTGCTGATATAGGT+AGG | + | chr8_4:25298196-25298215 | Msa1320630:intron | 35.0% |
| ATCTGTACTCTTATGTATCC+GGG | + | chr8_4:25298351-25298370 | Msa1320630:intron | 35.0% | |
| GCATGTTCTTAATTGTGTGT+AGG | + | chr8_4:25298438-25298457 | Msa1320630:intron | 35.0% | |
| TCTTGTGCAAAAGGTAATGA+GGG | - | chr8_4:25298671-25298690 | None:intergenic | 35.0% | |
| ATCTTGTGCAAAAGGTAATG+AGG | - | chr8_4:25298672-25298691 | None:intergenic | 35.0% | |
| !! | AATGCTTTTGCCGCTTAAAA+TGG | + | chr8_4:25298941-25298960 | Msa1320630:CDS | 35.0% |
| CTAGAAAAAGGCAACAATAC+TGG | + | chr8_4:25299558-25299577 | Msa1320630:CDS | 35.0% | |
| TTCAACATCAGTTACCATGA+TGG | + | chr8_4:25299654-25299673 | Msa1320630:CDS | 35.0% | |
| ! | ATCAGTTACCATGATGGAAA+TGG | + | chr8_4:25299660-25299679 | Msa1320630:CDS | 35.0% |
| AATTTATACCTGTTGCGGTA+TGG | - | chr8_4:25299788-25299807 | None:intergenic | 35.0% | |
| TATATTGCAGGTGAAGATGA+AGG | + | chr8_4:25299880-25299899 | Msa1320630:intron | 35.0% | |
| ATATTGCAGGTGAAGATGAA+GGG | + | chr8_4:25299881-25299900 | Msa1320630:intron | 35.0% | |
| TGATATACAGCATCATGAGT+TGG | - | chr8_4:25299918-25299937 | None:intergenic | 35.0% | |
| CTCATGATGCTGTATATCAA+TGG | + | chr8_4:25299919-25299938 | Msa1320630:CDS | 35.0% | |
| TATCAATGGCAACTCATTCT+TGG | + | chr8_4:25299933-25299952 | Msa1320630:CDS | 35.0% | |
| CTAAGTTAGTTAGACTACAG+TGG | + | chr8_4:25299956-25299975 | Msa1320630:CDS | 35.0% | |
| ! | TGTCTCACTCATTTTGCAAA+TGG | - | chr8_4:25300050-25300069 | None:intergenic | 35.0% |
| TAATGTGTGGAAGGATAGAT+AGG | - | chr8_4:25300174-25300193 | None:intergenic | 35.0% | |
| TACTAGGAAACACAGGGATA+AGG | + | chr8_4:25294750-25294769 | Msa1320630:five_prime_UTR | 40.0% | |
| AAGCTTAAGAACACAGAGCT+TGG | + | chr8_4:25296334-25296353 | Msa1320630:intron | 40.0% | |
| ACATTTAGTCCCTTGAAGCA+CGG | - | chr8_4:25296545-25296564 | None:intergenic | 40.0% | |
| GGAAACCAGAAACTGATGAT+TGG | + | chr8_4:25296681-25296700 | Msa1320630:CDS | 40.0% | |
| GAGAATAAAGCAAAGTGAGC+AGG | + | chr8_4:25296703-25296722 | Msa1320630:CDS | 40.0% | |
| ! | AGGCTGATGATGAGAGTAAA+TGG | - | chr8_4:25296744-25296763 | None:intergenic | 40.0% |
| TTTACTCTCATCATCAGCCT+TGG | + | chr8_4:25296744-25296763 | Msa1320630:CDS | 40.0% | |
| GAAAGTGAAGGAGAAACCAA+AGG | - | chr8_4:25296848-25296867 | None:intergenic | 40.0% | |
| ! | AGCCAAGAAGTGTATGCAAA+AGG | - | chr8_4:25296951-25296970 | None:intergenic | 40.0% |
| ! | AATGTCTTATTGGTCTCAGG+TGG | + | chr8_4:25297361-25297380 | Msa1320630:intron | 40.0% |
| ! | ATGTCTTATTGGTCTCAGGT+GGG | + | chr8_4:25297362-25297381 | Msa1320630:intron | 40.0% |
| !! | TTTGATGTTTCGGTGTTCCT+TGG | - | chr8_4:25297395-25297414 | None:intergenic | 40.0% |
| ATCCATGGTAAATGTGGTTG+AGG | - | chr8_4:25297428-25297447 | None:intergenic | 40.0% | |
| GTGCTTATCCATGGTAAATG+TGG | - | chr8_4:25297434-25297453 | None:intergenic | 40.0% | |
| TGCTTATGGACAACAAGCTA+TGG | + | chr8_4:25297616-25297635 | Msa1320630:CDS | 40.0% | |
| !! | ACTTCTTGTGTTTGGTGTCT+AGG | + | chr8_4:25297761-25297780 | Msa1320630:intron | 40.0% |
| CACCTATATCTGTGCATGAT+AGG | + | chr8_4:25297798-25297817 | Msa1320630:intron | 40.0% | |
| AGCCTATCATGCACAGATAT+AGG | - | chr8_4:25297803-25297822 | None:intergenic | 40.0% | |
| ATCTGTGCATGATAGGCTTA+TGG | + | chr8_4:25297805-25297824 | Msa1320630:intron | 40.0% | |
| ATGTATCCGAGAAATATCGG+TGG | - | chr8_4:25298057-25298076 | None:intergenic | 40.0% | |
| GAAGACATCCTTTCTCTCTA+TGG | + | chr8_4:25298723-25298742 | Msa1320630:intron | 40.0% | |
| GCAAAAGTCCATAGAGAGAA+AGG | - | chr8_4:25298734-25298753 | None:intergenic | 40.0% | |
| ACTTGAGTCCTAACAGCTAT+TGG | + | chr8_4:25298872-25298891 | Msa1320630:intron | 40.0% | |
| GCATAATGCCAATAGCTGTT+AGG | - | chr8_4:25298883-25298902 | None:intergenic | 40.0% | |
| GCATTCTAGCATGATGCATT+TGG | - | chr8_4:25298926-25298945 | None:intergenic | 40.0% | |
| ! | TTTGCCGCTTAAAATGGAAG+AGG | + | chr8_4:25298947-25298966 | Msa1320630:CDS | 40.0% |
| ! | GGTTCCTCTTCCATTTTAAG+CGG | - | chr8_4:25298954-25298973 | None:intergenic | 40.0% |
| ! | TGCTTTGCATTGACATACAC+AGG | - | chr8_4:25298975-25298994 | None:intergenic | 40.0% |
| GTCAATGCAAAGCAGTATCA+TGG | + | chr8_4:25298981-25299000 | Msa1320630:CDS | 40.0% | |
| GGGTAACTTAACTATCCCTT+AGG | + | chr8_4:25299282-25299301 | Msa1320630:intron | 40.0% | |
| TGACGGGATTCATGAAGATA+TGG | - | chr8_4:25299456-25299475 | None:intergenic | 40.0% | |
| ! | TTCTCAAAGCATGTTGGTGA+CGG | - | chr8_4:25299473-25299492 | None:intergenic | 40.0% |
| !! | TCACCAACATGCTTTGAGAA+GGG | + | chr8_4:25299473-25299492 | Msa1320630:CDS | 40.0% |
| !! | GATTCTGCTGCTCTAGAAAA+AGG | + | chr8_4:25299546-25299565 | Msa1320630:CDS | 40.0% |
| CAACAATACTGGTGCAACAT+CGG | + | chr8_4:25299569-25299588 | Msa1320630:CDS | 40.0% | |
| AACAATACTGGTGCAACATC+GGG | + | chr8_4:25299570-25299589 | Msa1320630:CDS | 40.0% | |
| GGTACCAACAATGAGAATCA+AGG | + | chr8_4:25299591-25299610 | Msa1320630:CDS | 40.0% | |
| TGAGCCTTGATTCTCATTGT+TGG | - | chr8_4:25299598-25299617 | None:intergenic | 40.0% | |
| CTGTAAAGCCATTTCCATCA+TGG | - | chr8_4:25299671-25299690 | None:intergenic | 40.0% | |
| TACAGCACTATGTCATTCAC+AGG | + | chr8_4:25299686-25299705 | Msa1320630:CDS | 40.0% | |
| CTATGTCATTCACAGGCAAA+TGG | + | chr8_4:25299693-25299712 | Msa1320630:CDS | 40.0% | |
| TTCACAGGCAAATGGAAAAC+AGG | + | chr8_4:25299701-25299720 | Msa1320630:CDS | 40.0% | |
| GCAAAGGTCTTTGTCCTTGT+CGG | - | chr8_4:25294942-25294961 | None:intergenic | 45.0% | |
| CACACACAACTGCATCGTAA+AGG | - | chr8_4:25295560-25295579 | None:intergenic | 45.0% | |
| TCAGAAGCTGAGTTGCATTG+AGG | - | chr8_4:25296026-25296045 | None:intergenic | 45.0% | |
| AAAAGCTGTGAAAGGATGCC+AGG | + | chr8_4:25296659-25296678 | Msa1320630:exon | 45.0% | |
| AAAGCTGTGAAAGGATGCCA+GGG | + | chr8_4:25296660-25296679 | Msa1320630:exon | 45.0% | |
| !! | TCATCAGTTTCTGGTTTCCC+TGG | - | chr8_4:25296680-25296699 | None:intergenic | 45.0% |
| CTGATCAGCTGAAGATGGTT+TGG | - | chr8_4:25296786-25296805 | None:intergenic | 45.0% | |
| TGTCACACATTCAGAGCCTT+TGG | + | chr8_4:25296829-25296848 | Msa1320630:CDS | 45.0% | |
| ! | TGTCTTATTGGTCTCAGGTG+GGG | + | chr8_4:25297363-25297382 | Msa1320630:intron | 45.0% |
| GGAACACCGAAACATCAAAC+AGG | + | chr8_4:25297396-25297415 | Msa1320630:CDS | 45.0% | |
| ACAGGGCCTGTTTGATGTTT+CGG | - | chr8_4:25297405-25297424 | None:intergenic | 45.0% | |
| GGTAAATGTGGTTGAGGACA+GGG | - | chr8_4:25297422-25297441 | None:intergenic | 45.0% | |
| TGGTAAATGTGGTTGAGGAC+AGG | - | chr8_4:25297423-25297442 | None:intergenic | 45.0% | |
| GTCCTCAACCACATTTACCA+TGG | + | chr8_4:25297423-25297442 | Msa1320630:CDS | 45.0% | |
| ACAAGTTCCGTGTGCGAATT+CGG | - | chr8_4:25297463-25297482 | None:intergenic | 45.0% | |
| AATTCGCACACGGAACTTGT+TGG | + | chr8_4:25297463-25297482 | Msa1320630:CDS | 45.0% | |
| !! | TCTCAAAGCATGTTGGTGAC+GGG | - | chr8_4:25299472-25299491 | None:intergenic | 45.0% |
| !! | GTCACCAACATGCTTTGAGA+AGG | + | chr8_4:25299472-25299491 | Msa1320630:CDS | 45.0% |
| TTGCCCTTCTCAAAGCATGT+TGG | - | chr8_4:25299479-25299498 | None:intergenic | 45.0% | |
| !! | AACATGCTTTGAGAAGGGCA+AGG | + | chr8_4:25299478-25299497 | Msa1320630:CDS | 45.0% |
| !! | ACATGCTTTGAGAAGGGCAA+GGG | + | chr8_4:25299479-25299498 | Msa1320630:CDS | 45.0% |
| CAGCACATGCACAAAATGCA+GGG | + | chr8_4:25299630-25299649 | Msa1320630:CDS | 45.0% | |
| ACAGGCAAATGGAAAACAGG+AGG | + | chr8_4:25299704-25299723 | Msa1320630:CDS | 45.0% | |
| CAGGCAAATGGAAAACAGGA+GGG | + | chr8_4:25299705-25299724 | Msa1320630:CDS | 45.0% | |
| AAACAGGAGGGTGACTTCTT+TGG | + | chr8_4:25299717-25299736 | Msa1320630:CDS | 45.0% | |
| ! | ACAGCATCATGAGTTGGATG+AGG | - | chr8_4:25299912-25299931 | None:intergenic | 45.0% |
| ! | TCCTCGGATTAGACGTGTCT+CGG | - | chr8_4:25296518-25296537 | None:intergenic | 50.0% |
| ACTCTCATCATCAGCCTTGG+TGG | + | chr8_4:25296747-25296766 | Msa1320630:CDS | 50.0% | |
| ! | CAGCCTTGGTGGCTTGAAAA+TGG | + | chr8_4:25296758-25296777 | Msa1320630:CDS | 50.0% |
| !! | GAGCCATTTTCAAGCCACCA+AGG | - | chr8_4:25296764-25296783 | None:intergenic | 50.0% |
| ! | CGGATCAAGGTGCTTATCCA+TGG | - | chr8_4:25297443-25297462 | None:intergenic | 50.0% |
| CCTTGATCCGAATTCGCACA+CGG | + | chr8_4:25297453-25297472 | Msa1320630:CDS | 50.0% | |
| !! | CATGCTTTGAGAAGGGCAAG+GGG | + | chr8_4:25299480-25299499 | Msa1320630:CDS | 50.0% |
| TTGAGAAGGGCAAGGGGAAA+TGG | + | chr8_4:25299486-25299505 | Msa1320630:CDS | 50.0% | |
| GCAGCACATGCACAAAATGC+AGG | + | chr8_4:25299629-25299648 | Msa1320630:CDS | 50.0% | |
| ACCTGTTGCGGTATGGTTGA+GGG | - | chr8_4:25299781-25299800 | None:intergenic | 50.0% | |
| TACCTGTTGCGGTATGGTTG+AGG | - | chr8_4:25299782-25299801 | None:intergenic | 50.0% | |
| GACTACAGTGGTGAAACCAG+TGG | + | chr8_4:25299968-25299987 | Msa1320630:exon | 50.0% | |
| AAGTAAGGGGAGAACGAACG+AGG | - | chr8_4:25300010-25300029 | None:intergenic | 50.0% | |
| ACCGAGACACGTCTAATCCG+AGG | + | chr8_4:25296514-25296533 | Msa1320630:intron | 55.0% | |
| CTTGAAGCACGGACACTCCT+CGG | - | chr8_4:25296534-25296553 | None:intergenic | 55.0% | |
| !! | GAGGAGTGTCCGTGCTTCAA+GGG | + | chr8_4:25296533-25296552 | Msa1320630:intron | 55.0% |
| CCGTGTGCGAATTCGGATCA+AGG | - | chr8_4:25297456-25297475 | None:intergenic | 55.0% | |
| AGAAGGGCAAGGGGAAATGG+CGG | + | chr8_4:25299489-25299508 | Msa1320630:CDS | 55.0% | |
| GTTGCGGTATGGTTGAGGGA+GGG | - | chr8_4:25299777-25299796 | None:intergenic | 55.0% | |
| TGTTGCGGTATGGTTGAGGG+AGG | - | chr8_4:25299778-25299797 | None:intergenic | 55.0% | |
| TCCCTCAACCATACCGCAAC+AGG | + | chr8_4:25299777-25299796 | Msa1320630:intron | 55.0% | |
| CAGTGGTGAAACCAGTGGCA+TGG | + | chr8_4:25299973-25299992 | Msa1320630:exon | 55.0% | |
| CATGACGTGTACCATGCCAC+TGG | - | chr8_4:25299987-25300006 | None:intergenic | 55.0% | |
| !! | CGAGGAGTGTCCGTGCTTCA+AGG | + | chr8_4:25296532-25296551 | Msa1320630:intron | 60.0% |
| ACGAAGACAGTCGCGCGCTA+AGG | + | chr8_4:25299013-25299032 | Msa1320630:CDS | 60.0% | |
| CTCAGGTGGGGACGTTGCCA+AGG | + | chr8_4:25297375-25297394 | Msa1320630:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 25294733 | 25300226 | 25294733 | ID=Msa1320630;Name=Msa1320630 |
| chr8_4 | mRNA | 25294733 | 25300226 | 25294733 | ID=Msa1320630-mRNA-1;Parent=Msa1320630;Name=Msa1320630-mRNA-1;_AED=0.13;_eAED=0.13;_QI=1348|0.83|0.85|1|0.83|0.71|7|245|319 |
| chr8_4 | exon | 25294733 | 25296063 | 25294733 | ID=Msa1320630-mRNA-1:exon:8676;Parent=Msa1320630-mRNA-1 |
| chr8_4 | exon | 25296657 | 25296884 | 25296657 | ID=Msa1320630-mRNA-1:exon:8677;Parent=Msa1320630-mRNA-1 |
| chr8_4 | exon | 25297380 | 25297495 | 25297380 | ID=Msa1320630-mRNA-1:exon:8678;Parent=Msa1320630-mRNA-1 |
| chr8_4 | exon | 25297569 | 25297637 | 25297569 | ID=Msa1320630-mRNA-1:exon:8679;Parent=Msa1320630-mRNA-1 |
| chr8_4 | exon | 25298906 | 25299070 | 25298906 | ID=Msa1320630-mRNA-1:exon:8680;Parent=Msa1320630-mRNA-1 |
| chr8_4 | exon | 25299453 | 25299759 | 25299453 | ID=Msa1320630-mRNA-1:exon:8681;Parent=Msa1320630-mRNA-1 |
| chr8_4 | exon | 25299890 | 25300226 | 25299890 | ID=Msa1320630-mRNA-1:exon:8682;Parent=Msa1320630-mRNA-1 |
| chr8_4 | five_prime_UTR | 25294733 | 25296063 | 25294733 | ID=Msa1320630-mRNA-1:five_prime_utr;Parent=Msa1320630-mRNA-1 |
| chr8_4 | five_prime_UTR | 25296657 | 25296673 | 25296657 | ID=Msa1320630-mRNA-1:five_prime_utr;Parent=Msa1320630-mRNA-1 |
| chr8_4 | CDS | 25296674 | 25296884 | 25296674 | ID=Msa1320630-mRNA-1:cds;Parent=Msa1320630-mRNA-1 |
| chr8_4 | CDS | 25297380 | 25297495 | 25297380 | ID=Msa1320630-mRNA-1:cds;Parent=Msa1320630-mRNA-1 |
| chr8_4 | CDS | 25297569 | 25297637 | 25297569 | ID=Msa1320630-mRNA-1:cds;Parent=Msa1320630-mRNA-1 |
| chr8_4 | CDS | 25298906 | 25299070 | 25298906 | ID=Msa1320630-mRNA-1:cds;Parent=Msa1320630-mRNA-1 |
| chr8_4 | CDS | 25299453 | 25299759 | 25299453 | ID=Msa1320630-mRNA-1:cds;Parent=Msa1320630-mRNA-1 |
| chr8_4 | CDS | 25299890 | 25299981 | 25299890 | ID=Msa1320630-mRNA-1:cds;Parent=Msa1320630-mRNA-1 |
| chr8_4 | three_prime_UTR | 25299982 | 25300226 | 25299982 | ID=Msa1320630-mRNA-1:three_prime_utr;Parent=Msa1320630-mRNA-1 |
| Gene Sequence |
| Protein sequence |
