Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321540 | XP_003627885.2 | 95.362 | 345 | 10 | 1 | 1 | 345 | 1 | 339 | 0.0 | 654 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321540 | sp|O22193|PUB4_ARATH | 34.028 | 288 | 171 | 8 | 8 | 294 | 543 | 812 | 3.88e-28 | 119 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321540 | G7LGS1 | 95.362 | 345 | 10 | 1 | 1 | 345 | 1 | 339 | 0.0 | 654 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1188350 | Msa1321540 | 0.829540 | 4.861827e-55 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321540 | MtrunA17_Chr8g0353271 | 95.362 | 345 | 10 | 1 | 1 | 345 | 1 | 339 | 0.0 | 654 |
| Msa1321540 | MtrunA17_Chr2g0284461 | 32.107 | 299 | 187 | 7 | 1 | 297 | 389 | 673 | 2.06e-29 | 119 |
| Msa1321540 | MtrunA17_Chr5g0437411 | 31.000 | 300 | 188 | 8 | 2 | 297 | 399 | 683 | 2.79e-28 | 115 |
| Msa1321540 | MtrunA17_Chr4g0044411 | 31.834 | 289 | 179 | 9 | 7 | 294 | 372 | 643 | 7.00e-26 | 108 |
| Msa1321540 | MtrunA17_Chr1g0199321 | 32.013 | 303 | 185 | 12 | 2 | 300 | 339 | 624 | 1.10e-24 | 105 |
| Msa1321540 | MtrunA17_Chr4g0031431 | 32.323 | 297 | 181 | 10 | 3 | 297 | 348 | 626 | 1.31e-24 | 104 |
| Msa1321540 | MtrunA17_Chr7g0248251 | 27.431 | 288 | 191 | 8 | 4 | 290 | 363 | 633 | 8.87e-21 | 93.6 |
| Msa1321540 | MtrunA17_Chr7g0237931 | 30.000 | 290 | 181 | 11 | 10 | 297 | 336 | 605 | 1.14e-20 | 93.2 |
| Msa1321540 | MtrunA17_Chr3g0106931 | 33.755 | 237 | 142 | 7 | 8 | 243 | 553 | 775 | 1.48e-20 | 93.2 |
| Msa1321540 | MtrunA17_Chr7g0261371 | 30.104 | 289 | 181 | 9 | 8 | 294 | 514 | 783 | 4.86e-18 | 85.5 |
| Msa1321540 | MtrunA17_Chr4g0013091 | 32.372 | 312 | 175 | 14 | 1 | 297 | 406 | 696 | 8.82e-18 | 84.7 |
| Msa1321540 | MtrunA17_Chr1g0183781 | 27.431 | 288 | 190 | 8 | 8 | 294 | 440 | 709 | 4.75e-17 | 82.4 |
| Msa1321540 | MtrunA17_Chr2g0290151 | 28.522 | 291 | 190 | 8 | 8 | 297 | 175 | 448 | 5.27e-15 | 75.9 |
| Msa1321540 | MtrunA17_Chr2g0280671 | 29.153 | 295 | 181 | 11 | 9 | 297 | 106 | 378 | 1.44e-14 | 73.9 |
| Msa1321540 | MtrunA17_Chr4g0059201 | 28.136 | 295 | 187 | 10 | 11 | 297 | 425 | 702 | 1.86e-14 | 74.7 |
| Msa1321540 | MtrunA17_Chr1g0152561 | 28.082 | 292 | 190 | 10 | 8 | 297 | 61 | 334 | 1.16e-13 | 71.2 |
| Msa1321540 | MtrunA17_Chr3g0118001 | 26.644 | 289 | 195 | 7 | 10 | 297 | 213 | 485 | 2.67e-11 | 64.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1321540 | AT1G08315.1 | 61.000 | 300 | 112 | 2 | 3 | 298 | 4 | 302 | 4.02e-125 | 362 |
| Msa1321540 | AT2G23140.3 | 34.028 | 288 | 171 | 8 | 8 | 294 | 354 | 623 | 1.66e-29 | 119 |
| Msa1321540 | AT2G23140.5 | 34.028 | 288 | 171 | 8 | 8 | 294 | 354 | 623 | 1.66e-29 | 119 |
| Msa1321540 | AT2G23140.2 | 34.028 | 288 | 171 | 8 | 8 | 294 | 543 | 812 | 3.94e-29 | 119 |
| Msa1321540 | AT2G23140.4 | 34.028 | 288 | 171 | 8 | 8 | 294 | 543 | 812 | 3.94e-29 | 119 |
| Msa1321540 | AT2G23140.1 | 34.028 | 288 | 171 | 8 | 8 | 294 | 546 | 815 | 4.26e-29 | 118 |
| Msa1321540 | AT1G23030.1 | 32.534 | 292 | 178 | 8 | 8 | 297 | 333 | 607 | 1.23e-27 | 114 |
| Msa1321540 | AT1G29340.1 | 31.065 | 338 | 202 | 10 | 1 | 333 | 401 | 712 | 1.27e-25 | 108 |
| Msa1321540 | AT5G67340.1 | 31.271 | 291 | 182 | 8 | 8 | 297 | 423 | 696 | 3.99e-23 | 100 |
| Msa1321540 | AT5G67340.2 | 31.271 | 291 | 182 | 8 | 8 | 297 | 423 | 696 | 3.99e-23 | 100 |
| Msa1321540 | AT1G71020.2 | 30.921 | 304 | 190 | 9 | 7 | 307 | 194 | 480 | 2.32e-22 | 98.2 |
| Msa1321540 | AT1G71020.1 | 30.921 | 304 | 190 | 9 | 7 | 307 | 342 | 628 | 3.60e-22 | 98.2 |
| Msa1321540 | AT3G54850.1 | 31.208 | 298 | 185 | 10 | 2 | 297 | 341 | 620 | 1.32e-20 | 93.6 |
| Msa1321540 | AT2G28830.1 | 29.392 | 296 | 189 | 10 | 2 | 294 | 279 | 557 | 1.70e-20 | 92.8 |
| Msa1321540 | AT3G46510.1 | 30.233 | 301 | 174 | 11 | 12 | 294 | 342 | 624 | 1.97e-20 | 92.8 |
| Msa1321540 | AT3G54790.2 | 30.175 | 285 | 181 | 7 | 11 | 294 | 441 | 708 | 3.90e-19 | 89.0 |
| Msa1321540 | AT3G54790.3 | 30.175 | 285 | 181 | 7 | 11 | 294 | 477 | 744 | 4.34e-19 | 89.0 |
| Msa1321540 | AT3G54790.1 | 30.175 | 285 | 181 | 7 | 11 | 294 | 477 | 744 | 4.34e-19 | 89.0 |
| Msa1321540 | AT5G42340.1 | 28.620 | 297 | 194 | 9 | 2 | 297 | 375 | 654 | 2.63e-16 | 80.5 |
| Msa1321540 | AT5G01830.1 | 31.650 | 297 | 171 | 11 | 8 | 297 | 372 | 643 | 3.11e-16 | 80.5 |
| Msa1321540 | AT5G65200.1 | 27.795 | 331 | 200 | 12 | 11 | 325 | 229 | 536 | 4.98e-16 | 79.3 |
| Msa1321540 | AT3G01400.1 | 30.508 | 295 | 179 | 13 | 8 | 295 | 64 | 339 | 9.54e-15 | 74.7 |
| Msa1321540 | AT1G60190.1 | 25.658 | 304 | 207 | 10 | 2 | 297 | 370 | 662 | 4.85e-13 | 70.5 |
| Msa1321540 | AT1G10560.1 | 25.828 | 302 | 204 | 10 | 3 | 297 | 385 | 673 | 3.47e-12 | 68.2 |
| Msa1321540 | AT5G62560.1 | 27.046 | 281 | 176 | 12 | 25 | 297 | 253 | 512 | 1.81e-11 | 65.5 |
| Msa1321540 | AT5G58680.1 | 29.412 | 255 | 161 | 10 | 8 | 259 | 62 | 300 | 2.76e-11 | 64.3 |
| Msa1321540 | AT5G40140.1 | 26.531 | 294 | 197 | 7 | 11 | 300 | 233 | 511 | 7.03e-11 | 63.9 |
Find 86 sgRNAs with CRISPR-Local
Find 310 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGCGTTTAAGAAGGTTTC+TGG | 0.219872 | 8_4:+27532294 | Msa1321540:CDS |
| ACATCTCTGATTTAGGTTGC+TGG | 0.315701 | 8_4:+27532255 | Msa1321540:intron |
| ATTGCTGATGTTAAAGATAA+AGG | 0.343931 | 8_4:+27532474 | Msa1321540:CDS |
| GCTATAACGGGTCGGGTTGA+TGG | 0.352208 | 8_4:-27530991 | None:intergenic |
| TTGAATAGTGATTCGTCGTT+TGG | 0.355196 | 8_4:+27532630 | Msa1321540:CDS |
| AAGGGTGTGAAGATGAATAA+AGG | 0.361343 | 8_4:-27531047 | None:intergenic |
| GATCCACAGCCTTCTTTCTT+CGG | 0.373338 | 8_4:+27531224 | Msa1321540:CDS |
| GGTTCAGTTTGGTGTTGTTC+CGG | 0.382972 | 8_4:+27531404 | Msa1321540:CDS |
| AAAGATAAAGGAAGTGTTAA+GGG | 0.391288 | 8_4:+27532486 | Msa1321540:CDS |
| GTAAGGAATTGCGCCTGATT+CGG | 0.391749 | 8_4:-27531013 | None:intergenic |
| TGCGCCTGATTCGGCTATAA+CGG | 0.401712 | 8_4:-27531004 | None:intergenic |
| GGATTGAACAGCGGCGGCGG+CGG | 0.408949 | 8_4:-27531190 | None:intergenic |
| GGCGGATTGAACAGCGGCGG+CGG | 0.409584 | 8_4:-27531193 | None:intergenic |
| TTTAAGAAGGTTTCTGGTGT+TGG | 0.413108 | 8_4:+27532300 | Msa1321540:CDS |
| ATTGCAATTGCAACTTGAAA+AGG | 0.419322 | 8_4:-27530775 | None:intergenic |
| TAAAGATAAAGGAAGTGTTA+AGG | 0.422699 | 8_4:+27532485 | Msa1321540:CDS |
| GATGATTATCGTACTGTTGT+TGG | 0.425869 | 8_4:+27531249 | Msa1321540:CDS |
| CGCGGTGGCGTTTGGTGCGA+TGG | 0.437208 | 8_4:+27532446 | Msa1321540:CDS |
| CGACCCGTTATAGCCGAATC+AGG | 0.438162 | 8_4:+27531000 | Msa1321540:CDS |
| GTAAGAGACGCGGTGGCGTT+TGG | 0.449671 | 8_4:+27532438 | Msa1321540:CDS |
| TTGCTACTGGTTCGAGTATG+AGG | 0.451497 | 8_4:+27532346 | Msa1321540:CDS |
| AAGTGTTGAGGCGTTTAAGA+AGG | 0.460925 | 8_4:+27532287 | Msa1321540:CDS |
| TTGAACAGCGGCGGCGGCGG+AGG | 0.468848 | 8_4:-27531187 | None:intergenic |
| ATTGTTAATGATGGTAGAGT+AGG | 0.470952 | 8_4:+27531441 | Msa1321540:CDS |
| TGCTTCCGCGGTTATTGCAC+AGG | 0.471008 | 8_4:+27531476 | Msa1321540:CDS |
| TTTGGGTTGGAGGGAGAGAG+AGG | 0.471628 | 8_4:-27530855 | None:intergenic |
| AAGTGTTAAGGGGAAGAGTA+AGG | 0.472134 | 8_4:+27532497 | Msa1321540:CDS |
| TTTGGATAAGAAGTAAGAAC+TGG | 0.475648 | 8_4:-27530655 | None:intergenic |
| GATCTGCTCGATCTTGCTAC+TGG | 0.479247 | 8_4:+27532333 | Msa1321540:CDS |
| GTTCGTAGTGATGGTAATGT+TGG | 0.479261 | 8_4:+27532606 | Msa1321540:CDS |
| TTGTTAATGATGGTAGAGTA+GGG | 0.494346 | 8_4:+27531442 | Msa1321540:CDS |
| AACGAATCTTTAACCGTCCT+AGG | 0.498994 | 8_4:-27531333 | None:intergenic |
| CGTGCTACGATGGTTCAGTT+TGG | 0.504494 | 8_4:+27531393 | Msa1321540:CDS |
| GTGGCGTTTGGTGCGATGGA+TGG | 0.506730 | 8_4:+27532450 | Msa1321540:CDS |
| CTGGTTCGAGTATGAGGACG+AGG | 0.510558 | 8_4:+27532352 | Msa1321540:CDS |
| TGTGGTGGAGATGTGGTGGC+TGG | 0.510838 | 8_4:+27532411 | Msa1321540:CDS |
| AGGGTGTGAAGATGAATAAA+GGG | 0.518133 | 8_4:-27531046 | None:intergenic |
| GGTTTCTGGTGTTGGAGTGT+TGG | 0.526980 | 8_4:+27532308 | Msa1321540:CDS |
| AATCATCAACCGAAGAAAGA+AGG | 0.528326 | 8_4:-27531233 | None:intergenic |
| TTCTGGTGTTGGAGTGTTGG+CGG | 0.530110 | 8_4:+27532311 | Msa1321540:CDS |
| TCCGTTGAATCGTGCTACGA+TGG | 0.531126 | 8_4:+27531383 | Msa1321540:CDS |
| CTGATTCGGCTATAACGGGT+CGG | 0.532450 | 8_4:-27530999 | None:intergenic |
| CTCGATGAGTGATTCGACTC+GGG | 0.534852 | 8_4:-27530944 | None:intergenic |
| GCTGTGGATCGTAGCGGCGG+CGG | 0.537699 | 8_4:-27531211 | None:intergenic |
| TGATTCGGCTATAACGGGTC+GGG | 0.538084 | 8_4:-27530998 | None:intergenic |
| TCTTTCATGAATGAAGATAG+TGG | 0.538879 | 8_4:+27532654 | Msa1321540:CDS |
| TAAAGGGTTTCAGCGAGGTA+AGG | 0.539730 | 8_4:-27531030 | None:intergenic |
| GTTTAGGAAGATTGTATGAG+TGG | 0.542321 | 8_4:-27530809 | None:intergenic |
| CACGGTGATGTTCGTAGTGA+TGG | 0.549767 | 8_4:+27532579 | Msa1321540:CDS |
| TGTGAGATGTGGTGGAGATG+TGG | 0.560397 | 8_4:+27532404 | Msa1321540:CDS |
| ACCATCGTAGCACGATTCAA+CGG | 0.561289 | 8_4:-27531384 | None:intergenic |
| TTTAGGAAGATTGTATGAGT+GGG | 0.562404 | 8_4:-27530808 | None:intergenic |
| GATTTAGGTTGCTGGTTGCG+AGG | 0.564684 | 8_4:+27532263 | Msa1321540:intron |
| CACGGTGATGTTCGTAGTCA+CGG | 0.566505 | 8_4:+27532561 | Msa1321540:CDS |
| CTAAATCTTGTGAGATGTGG+TGG | 0.578104 | 8_4:+27532396 | Msa1321540:CDS |
| CCGTCCTAGGCGGTGAAGAA+CGG | 0.579334 | 8_4:-27531320 | None:intergenic |
| GGAAAGGTTTAAAAGTGTTG+CGG | 0.581602 | 8_4:-27531085 | None:intergenic |
| CAACCGAAGAAAGAAGGCTG+TGG | 0.588786 | 8_4:-27531227 | None:intergenic |
| GTCACCGTTCTTCACCGCCT+AGG | 0.589077 | 8_4:+27531316 | Msa1321540:CDS |
| ACGCAAACCGCCGCGCGGTG+CGG | 0.595256 | 8_4:+27530884 | Msa1321540:CDS |
| GAGTTGATGAGAGTGATGGT+TGG | 0.595956 | 8_4:+27532525 | Msa1321540:CDS |
| GGCGGCGGATTGAACAGCGG+CGG | 0.598501 | 8_4:-27531196 | None:intergenic |
| GTTGGTGATGTTCGTAGTCA+CGG | 0.603776 | 8_4:+27532543 | Msa1321540:CDS |
| AAGATAAAGGAAGTGTTAAG+GGG | 0.604994 | 8_4:+27532487 | Msa1321540:CDS |
| CCGTTCTTCACCGCCTAGGA+CGG | 0.606408 | 8_4:+27531320 | Msa1321540:CDS |
| GAGATGTGGTGGAGATGTGG+TGG | 0.610433 | 8_4:+27532407 | Msa1321540:CDS |
| GATGGTGATGTTCGTAGTGA+TGG | 0.611434 | 8_4:+27532597 | Msa1321540:CDS |
| TATGAGGACGAGGGAAAATG+CGG | 0.612956 | 8_4:+27532362 | Msa1321540:CDS |
| GCTCGATGAGTGATTCGACT+CGG | 0.617154 | 8_4:-27530945 | None:intergenic |
| GATTGTTGAAGATGCTTCCG+CGG | 0.638020 | 8_4:+27531464 | Msa1321540:CDS |
| GTTGTTATGACTAAAAGTCA+TGG | 0.646705 | 8_4:-27530717 | None:intergenic |
| AAGGCTGTGGATCGTAGCGG+CGG | 0.648909 | 8_4:-27531214 | None:intergenic |
| TTGCTAAATCTTGTGAGATG+TGG | 0.649179 | 8_4:+27532393 | Msa1321540:CDS |
| TGGAGATGTAAGAGACGCGG+TGG | 0.667404 | 8_4:+27532431 | Msa1321540:CDS |
| AGCGGCGGCGGATTGAACAG+CGG | 0.667946 | 8_4:-27531199 | None:intergenic |
| AATGGACGCAAACCGCCGCG+CGG | 0.672166 | 8_4:+27530879 | Msa1321540:exon |
| TGGTTGCGAGGAAAGTGTTG+AGG | 0.674105 | 8_4:+27532275 | Msa1321540:CDS |
| ACAATCAACGAAAACAACGC+CGG | 0.685893 | 8_4:-27531423 | None:intergenic |
| ATGAATAAAGGGTTTCAGCG+AGG | 0.686647 | 8_4:-27531035 | None:intergenic |
| GAACCTATCATGTCCACGCG+CGG | 0.689698 | 8_4:+27531120 | Msa1321540:CDS |
| GAATCTTTAACCGTCCTAGG+CGG | 0.710443 | 8_4:-27531330 | None:intergenic |
| GTTATGACTAAAAGTCATGG+TGG | 0.713090 | 8_4:-27530714 | None:intergenic |
| AAGAAGGCTGTGGATCGTAG+CGG | 0.713717 | 8_4:-27531217 | None:intergenic |
| TGGTTCGAGTATGAGGACGA+GGG | 0.725606 | 8_4:+27532353 | Msa1321540:CDS |
| GGCTGGAGATGTAAGAGACG+CGG | 0.727136 | 8_4:+27532428 | Msa1321540:CDS |
| AATAACCTGTGCAATAACCG+CGG | 0.737571 | 8_4:-27531481 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTATCTTATATTTTAACTTA+TGG | + | chr8_4:27531585-27531604 | Msa1321540:intron | 10.0% |
| !!! | TTATCTTATATTTTAACTTA+TGG | + | chr8_4:27531585-27531604 | Msa1321540:intron | 10.0% |
| !! | AAGAAGTTGAATTAAATTAA+GGG | + | chr8_4:27531552-27531571 | Msa1321540:intron | 15.0% |
| !! | CTATCTTATTATATTACTTA+GGG | - | chr8_4:27532182-27532201 | None:intergenic | 15.0% |
| !!! | TAAGAGTTAATTATTTTAAC+TGG | - | chr8_4:27532205-27532224 | None:intergenic | 15.0% |
| !! | AAGAAGTTGAATTAAATTAA+GGG | + | chr8_4:27531552-27531571 | Msa1321540:intron | 15.0% |
| !! | CTATCTTATTATATTACTTA+GGG | - | chr8_4:27532182-27532201 | None:intergenic | 15.0% |
| !!! | TAAGAGTTAATTATTTTAAC+TGG | - | chr8_4:27532205-27532224 | None:intergenic | 15.0% |
| !!! | TGTTTTTTGAACACAAAATT+TGG | - | chr8_4:27530676-27530695 | None:intergenic | 20.0% |
| !! | GAAGAAGTTGAATTAAATTA+AGG | + | chr8_4:27531551-27531570 | Msa1321540:intron | 20.0% |
| !! | TATTCATAAGTTATGAAACA+CGG | - | chr8_4:27532035-27532054 | None:intergenic | 20.0% |
| !! | GCTATCTTATTATATTACTT+AGG | - | chr8_4:27532183-27532202 | None:intergenic | 20.0% |
| !!! | TGTTTTTTGAACACAAAATT+TGG | - | chr8_4:27530676-27530695 | None:intergenic | 20.0% |
| !! | GAAGAAGTTGAATTAAATTA+AGG | + | chr8_4:27531551-27531570 | Msa1321540:intron | 20.0% |
| !! | TATTCATAAGTTATGAAACA+CGG | - | chr8_4:27532035-27532054 | None:intergenic | 20.0% |
| !! | GCTATCTTATTATATTACTT+AGG | - | chr8_4:27532183-27532202 | None:intergenic | 20.0% |
| !!! | GTGTAAGAGTTTTTTTGTTT+AGG | - | chr8_4:27530828-27530847 | None:intergenic | 25.0% |
| !!! | TTTTCGTTGATTGTTAATGA+TGG | + | chr8_4:27531432-27531451 | Msa1321540:CDS | 25.0% |
| ! | ATGAAGAATGGAAAATACTT+GGG | - | chr8_4:27531795-27531814 | None:intergenic | 25.0% |
| ! | TATGAAGAATGGAAAATACT+TGG | - | chr8_4:27531796-27531815 | None:intergenic | 25.0% |
| ! | AAAAAACAGCTTATGAAGAA+TGG | - | chr8_4:27531807-27531826 | None:intergenic | 25.0% |
| ! | TTCTGTGTAATTATATGTGT+CGG | + | chr8_4:27531943-27531962 | Msa1321540:intron | 25.0% |
| ! | ACTATCACATTGTATTACTT+GGG | - | chr8_4:27532131-27532150 | None:intergenic | 25.0% |
| ! | AAGTAATACAATGTGATAGT+CGG | + | chr8_4:27532131-27532150 | Msa1321540:intron | 25.0% |
| !! | AACTTTTACATCTCTGATTT+AGG | + | chr8_4:27532248-27532267 | Msa1321540:intron | 25.0% |
| ! | ATTGCTGATGTTAAAGATAA+AGG | + | chr8_4:27532474-27532493 | Msa1321540:CDS | 25.0% |
| !!! | TAAAGATAAAGGAAGTGTTA+AGG | + | chr8_4:27532485-27532504 | Msa1321540:CDS | 25.0% |
| !!! | AAAGATAAAGGAAGTGTTAA+GGG | + | chr8_4:27532486-27532505 | Msa1321540:CDS | 25.0% |
| !!! | GTGTAAGAGTTTTTTTGTTT+AGG | - | chr8_4:27530828-27530847 | None:intergenic | 25.0% |
| !!! | TTTTCGTTGATTGTTAATGA+TGG | + | chr8_4:27531432-27531451 | Msa1321540:CDS | 25.0% |
| ! | ATGAAGAATGGAAAATACTT+GGG | - | chr8_4:27531795-27531814 | None:intergenic | 25.0% |
| ! | TATGAAGAATGGAAAATACT+TGG | - | chr8_4:27531796-27531815 | None:intergenic | 25.0% |
| ! | AAAAAACAGCTTATGAAGAA+TGG | - | chr8_4:27531807-27531826 | None:intergenic | 25.0% |
| ! | TTCTGTGTAATTATATGTGT+CGG | + | chr8_4:27531943-27531962 | Msa1321540:intron | 25.0% |
| ! | ACTATCACATTGTATTACTT+GGG | - | chr8_4:27532131-27532150 | None:intergenic | 25.0% |
| ! | AAGTAATACAATGTGATAGT+CGG | + | chr8_4:27532131-27532150 | Msa1321540:intron | 25.0% |
| !! | AACTTTTACATCTCTGATTT+AGG | + | chr8_4:27532248-27532267 | Msa1321540:intron | 25.0% |
| ! | ATTGCTGATGTTAAAGATAA+AGG | + | chr8_4:27532474-27532493 | Msa1321540:CDS | 25.0% |
| !!! | TAAAGATAAAGGAAGTGTTA+AGG | + | chr8_4:27532485-27532504 | Msa1321540:CDS | 25.0% |
| !!! | AAAGATAAAGGAAGTGTTAA+GGG | + | chr8_4:27532486-27532505 | Msa1321540:CDS | 25.0% |
| TTTGGATAAGAAGTAAGAAC+TGG | - | chr8_4:27530658-27530677 | None:intergenic | 30.0% | |
| GTTGTTATGACTAAAAGTCA+TGG | - | chr8_4:27530720-27530739 | None:intergenic | 30.0% | |
| ATTGCAATTGCAACTTGAAA+AGG | - | chr8_4:27530778-27530797 | None:intergenic | 30.0% | |
| TTTAGGAAGATTGTATGAGT+GGG | - | chr8_4:27530811-27530830 | None:intergenic | 30.0% | |
| ! | GTTCTTTTTCTGTTATGGAA+AGG | - | chr8_4:27531104-27531123 | None:intergenic | 30.0% |
| ! | GATAGGTTCTTTTTCTGTTA+TGG | - | chr8_4:27531109-27531128 | None:intergenic | 30.0% |
| ATTGTTAATGATGGTAGAGT+AGG | + | chr8_4:27531441-27531460 | Msa1321540:CDS | 30.0% | |
| TTGTTAATGATGGTAGAGTA+GGG | + | chr8_4:27531442-27531461 | Msa1321540:CDS | 30.0% | |
| ! | TTTCATAAACTAGCTTGACA+AGG | + | chr8_4:27531832-27531851 | Msa1321540:intron | 30.0% |
| CTTCAAATTATTAGCAGTGT+CGG | - | chr8_4:27531912-27531931 | None:intergenic | 30.0% | |
| CTATCACATTGTATTACTTG+GGG | - | chr8_4:27532130-27532149 | None:intergenic | 30.0% | |
| GACTATCACATTGTATTACT+TGG | - | chr8_4:27532132-27532151 | None:intergenic | 30.0% | |
| TAGAACAACTAACTCTCAAA+CGG | + | chr8_4:27532155-27532174 | Msa1321540:intron | 30.0% | |
| !! | AAGATAAAGGAAGTGTTAAG+GGG | + | chr8_4:27532487-27532506 | Msa1321540:CDS | 30.0% |
| TCTTTCATGAATGAAGATAG+TGG | + | chr8_4:27532654-27532673 | Msa1321540:CDS | 30.0% | |
| TTTGGATAAGAAGTAAGAAC+TGG | - | chr8_4:27530658-27530677 | None:intergenic | 30.0% | |
| GTTGTTATGACTAAAAGTCA+TGG | - | chr8_4:27530720-27530739 | None:intergenic | 30.0% | |
| ATTGCAATTGCAACTTGAAA+AGG | - | chr8_4:27530778-27530797 | None:intergenic | 30.0% | |
| TTTAGGAAGATTGTATGAGT+GGG | - | chr8_4:27530811-27530830 | None:intergenic | 30.0% | |
| ! | GTTCTTTTTCTGTTATGGAA+AGG | - | chr8_4:27531104-27531123 | None:intergenic | 30.0% |
| ! | GATAGGTTCTTTTTCTGTTA+TGG | - | chr8_4:27531109-27531128 | None:intergenic | 30.0% |
| ATTGTTAATGATGGTAGAGT+AGG | + | chr8_4:27531441-27531460 | Msa1321540:CDS | 30.0% | |
| TTGTTAATGATGGTAGAGTA+GGG | + | chr8_4:27531442-27531461 | Msa1321540:CDS | 30.0% | |
| ! | TTTCATAAACTAGCTTGACA+AGG | + | chr8_4:27531832-27531851 | Msa1321540:intron | 30.0% |
| CTTCAAATTATTAGCAGTGT+CGG | - | chr8_4:27531912-27531931 | None:intergenic | 30.0% | |
| CTATCACATTGTATTACTTG+GGG | - | chr8_4:27532130-27532149 | None:intergenic | 30.0% | |
| GACTATCACATTGTATTACT+TGG | - | chr8_4:27532132-27532151 | None:intergenic | 30.0% | |
| TAGAACAACTAACTCTCAAA+CGG | + | chr8_4:27532155-27532174 | Msa1321540:intron | 30.0% | |
| !! | AAGATAAAGGAAGTGTTAAG+GGG | + | chr8_4:27532487-27532506 | Msa1321540:CDS | 30.0% |
| TCTTTCATGAATGAAGATAG+TGG | + | chr8_4:27532654-27532673 | Msa1321540:CDS | 30.0% | |
| GTTATGACTAAAAGTCATGG+TGG | - | chr8_4:27530717-27530736 | None:intergenic | 35.0% | |
| GTTTAGGAAGATTGTATGAG+TGG | - | chr8_4:27530812-27530831 | None:intergenic | 35.0% | |
| AGGGTGTGAAGATGAATAAA+GGG | - | chr8_4:27531049-27531068 | None:intergenic | 35.0% | |
| ! | AAGGGTGTGAAGATGAATAA+AGG | - | chr8_4:27531050-27531069 | None:intergenic | 35.0% |
| !! | GGAAAGGTTTAAAAGTGTTG+CGG | - | chr8_4:27531088-27531107 | None:intergenic | 35.0% |
| AATCATCAACCGAAGAAAGA+AGG | - | chr8_4:27531236-27531255 | None:intergenic | 35.0% | |
| GATGATTATCGTACTGTTGT+TGG | + | chr8_4:27531249-27531268 | Msa1321540:CDS | 35.0% | |
| TTCACCGTGACATTAAATCT+GGG | + | chr8_4:27531650-27531669 | Msa1321540:intron | 35.0% | |
| ACAACACATACAACACATCT+GGG | + | chr8_4:27531710-27531729 | Msa1321540:intron | 35.0% | |
| TCACCTGTGACATTAAATCT+GGG | - | chr8_4:27531762-27531781 | None:intergenic | 35.0% | |
| AAGATTAGACGTCACATTGT+CGG | - | chr8_4:27532004-27532023 | None:intergenic | 35.0% | |
| ACAATGTGACGTCTAATCTT+AGG | + | chr8_4:27532004-27532023 | Msa1321540:intron | 35.0% | |
| ATTGTATTACTTGGGGCTTA+GGG | - | chr8_4:27532123-27532142 | None:intergenic | 35.0% | |
| AGAACAACTAACTCTCAAAC+GGG | + | chr8_4:27532156-27532175 | Msa1321540:intron | 35.0% | |
| !! | TTTAAGAAGGTTTCTGGTGT+TGG | + | chr8_4:27532300-27532319 | Msa1321540:CDS | 35.0% |
| TTGCTAAATCTTGTGAGATG+TGG | + | chr8_4:27532393-27532412 | Msa1321540:CDS | 35.0% | |
| !!! | TTTTGAGTTGATGAGAGTGA+TGG | + | chr8_4:27532521-27532540 | Msa1321540:CDS | 35.0% |
| TTGAATAGTGATTCGTCGTT+TGG | + | chr8_4:27532630-27532649 | Msa1321540:CDS | 35.0% | |
| GTTATGACTAAAAGTCATGG+TGG | - | chr8_4:27530717-27530736 | None:intergenic | 35.0% | |
| GTTTAGGAAGATTGTATGAG+TGG | - | chr8_4:27530812-27530831 | None:intergenic | 35.0% | |
| AGGGTGTGAAGATGAATAAA+GGG | - | chr8_4:27531049-27531068 | None:intergenic | 35.0% | |
| ! | AAGGGTGTGAAGATGAATAA+AGG | - | chr8_4:27531050-27531069 | None:intergenic | 35.0% |
| !! | GGAAAGGTTTAAAAGTGTTG+CGG | - | chr8_4:27531088-27531107 | None:intergenic | 35.0% |
| AATCATCAACCGAAGAAAGA+AGG | - | chr8_4:27531236-27531255 | None:intergenic | 35.0% | |
| GATGATTATCGTACTGTTGT+TGG | + | chr8_4:27531249-27531268 | Msa1321540:CDS | 35.0% | |
| TTCACCGTGACATTAAATCT+GGG | + | chr8_4:27531650-27531669 | Msa1321540:intron | 35.0% | |
| ACAACACATACAACACATCT+GGG | + | chr8_4:27531710-27531729 | Msa1321540:intron | 35.0% | |
| TCACCTGTGACATTAAATCT+GGG | - | chr8_4:27531762-27531781 | None:intergenic | 35.0% | |
| AAGATTAGACGTCACATTGT+CGG | - | chr8_4:27532004-27532023 | None:intergenic | 35.0% | |
| ACAATGTGACGTCTAATCTT+AGG | + | chr8_4:27532004-27532023 | Msa1321540:intron | 35.0% | |
| ATTGTATTACTTGGGGCTTA+GGG | - | chr8_4:27532123-27532142 | None:intergenic | 35.0% | |
| AGAACAACTAACTCTCAAAC+GGG | + | chr8_4:27532156-27532175 | Msa1321540:intron | 35.0% | |
| !! | TTTAAGAAGGTTTCTGGTGT+TGG | + | chr8_4:27532300-27532319 | Msa1321540:CDS | 35.0% |
| TTGCTAAATCTTGTGAGATG+TGG | + | chr8_4:27532393-27532412 | Msa1321540:CDS | 35.0% | |
| !!! | TTTTGAGTTGATGAGAGTGA+TGG | + | chr8_4:27532521-27532540 | Msa1321540:CDS | 35.0% |
| TTGAATAGTGATTCGTCGTT+TGG | + | chr8_4:27532630-27532649 | Msa1321540:CDS | 35.0% | |
| !!! | TTTGCGTCCATTTTTTGGGT+TGG | - | chr8_4:27530871-27530890 | None:intergenic | 40.0% |
| !!! | GACTCGGGTTTTTTCTGAAA+CGG | - | chr8_4:27530932-27530951 | None:intergenic | 40.0% |
| ATGAATAAAGGGTTTCAGCG+AGG | - | chr8_4:27531038-27531057 | None:intergenic | 40.0% | |
| AACGAATCTTTAACCGTCCT+AGG | - | chr8_4:27531336-27531355 | None:intergenic | 40.0% | |
| ACAATCAACGAAAACAACGC+CGG | - | chr8_4:27531426-27531445 | None:intergenic | 40.0% | |
| AATAACCTGTGCAATAACCG+CGG | - | chr8_4:27531484-27531503 | None:intergenic | 40.0% | |
| CTTCACCGTGACATTAAATC+TGG | + | chr8_4:27531649-27531668 | Msa1321540:intron | 40.0% | |
| GTGACCCAGATTTAATGTCA+CGG | - | chr8_4:27531657-27531676 | None:intergenic | 40.0% | |
| ACACATTACCACACAACATC+TGG | + | chr8_4:27531682-27531701 | Msa1321540:intron | 40.0% | |
| CACATTACCACACAACATCT+GGG | + | chr8_4:27531683-27531702 | Msa1321540:intron | 40.0% | |
| GATGTGTTGTATGTGTTGTG+TGG | - | chr8_4:27531709-27531728 | None:intergenic | 40.0% | |
| CACAACACATACAACACATC+TGG | + | chr8_4:27531709-27531728 | Msa1321540:intron | 40.0% | |
| ATTAAATCTGGGCCACACAA+AGG | - | chr8_4:27531751-27531770 | None:intergenic | 40.0% | |
| GTCACCTGTGACATTAAATC+TGG | - | chr8_4:27531763-27531782 | None:intergenic | 40.0% | |
| CTTGACAAGGTTATGAAGCA+CGG | + | chr8_4:27531845-27531864 | Msa1321540:intron | 40.0% | |
| AAGGTTATGAAGCACGGATA+CGG | + | chr8_4:27531851-27531870 | Msa1321540:intron | 40.0% | |
| CATTGTATTACTTGGGGCTT+AGG | - | chr8_4:27532124-27532143 | None:intergenic | 40.0% | |
| !! | ACATCTCTGATTTAGGTTGC+TGG | + | chr8_4:27532255-27532274 | Msa1321540:intron | 40.0% |
| !! | AAGTGTTGAGGCGTTTAAGA+AGG | + | chr8_4:27532287-27532306 | Msa1321540:CDS | 40.0% |
| CTAAATCTTGTGAGATGTGG+TGG | + | chr8_4:27532396-27532415 | Msa1321540:CDS | 40.0% | |
| AAGTGTTAAGGGGAAGAGTA+AGG | + | chr8_4:27532497-27532516 | Msa1321540:CDS | 40.0% | |
| ! | GTTCGTAGTGATGGTAATGT+TGG | + | chr8_4:27532606-27532625 | Msa1321540:CDS | 40.0% |
| !!! | TTTGCGTCCATTTTTTGGGT+TGG | - | chr8_4:27530871-27530890 | None:intergenic | 40.0% |
| !!! | GACTCGGGTTTTTTCTGAAA+CGG | - | chr8_4:27530932-27530951 | None:intergenic | 40.0% |
| ATGAATAAAGGGTTTCAGCG+AGG | - | chr8_4:27531038-27531057 | None:intergenic | 40.0% | |
| AACGAATCTTTAACCGTCCT+AGG | - | chr8_4:27531336-27531355 | None:intergenic | 40.0% | |
| ACAATCAACGAAAACAACGC+CGG | - | chr8_4:27531426-27531445 | None:intergenic | 40.0% | |
| AATAACCTGTGCAATAACCG+CGG | - | chr8_4:27531484-27531503 | None:intergenic | 40.0% | |
| CTTCACCGTGACATTAAATC+TGG | + | chr8_4:27531649-27531668 | Msa1321540:intron | 40.0% | |
| GTGACCCAGATTTAATGTCA+CGG | - | chr8_4:27531657-27531676 | None:intergenic | 40.0% | |
| ACACATTACCACACAACATC+TGG | + | chr8_4:27531682-27531701 | Msa1321540:intron | 40.0% | |
| CACATTACCACACAACATCT+GGG | + | chr8_4:27531683-27531702 | Msa1321540:intron | 40.0% | |
| GATGTGTTGTATGTGTTGTG+TGG | - | chr8_4:27531709-27531728 | None:intergenic | 40.0% | |
| CACAACACATACAACACATC+TGG | + | chr8_4:27531709-27531728 | Msa1321540:intron | 40.0% | |
| ATTAAATCTGGGCCACACAA+AGG | - | chr8_4:27531751-27531770 | None:intergenic | 40.0% | |
| GTCACCTGTGACATTAAATC+TGG | - | chr8_4:27531763-27531782 | None:intergenic | 40.0% | |
| CTTGACAAGGTTATGAAGCA+CGG | + | chr8_4:27531845-27531864 | Msa1321540:intron | 40.0% | |
| AAGGTTATGAAGCACGGATA+CGG | + | chr8_4:27531851-27531870 | Msa1321540:intron | 40.0% | |
| CATTGTATTACTTGGGGCTT+AGG | - | chr8_4:27532124-27532143 | None:intergenic | 40.0% | |
| !! | ACATCTCTGATTTAGGTTGC+TGG | + | chr8_4:27532255-27532274 | Msa1321540:intron | 40.0% |
| !! | AAGTGTTGAGGCGTTTAAGA+AGG | + | chr8_4:27532287-27532306 | Msa1321540:CDS | 40.0% |
| CTAAATCTTGTGAGATGTGG+TGG | + | chr8_4:27532396-27532415 | Msa1321540:CDS | 40.0% | |
| AAGTGTTAAGGGGAAGAGTA+AGG | + | chr8_4:27532497-27532516 | Msa1321540:CDS | 40.0% | |
| ! | GTTCGTAGTGATGGTAATGT+TGG | + | chr8_4:27532606-27532625 | Msa1321540:CDS | 40.0% |
| TCTCCCTCCAACCCAAAAAA+TGG | + | chr8_4:27530861-27530880 | Msa1321540:exon | 45.0% | |
| !!! | CGTCCATTTTTTGGGTTGGA+GGG | - | chr8_4:27530867-27530886 | None:intergenic | 45.0% |
| !!! | GCGGTTTGCGTCCATTTTTT+GGG | - | chr8_4:27530875-27530894 | None:intergenic | 45.0% |
| GTAAGGAATTGCGCCTGATT+CGG | - | chr8_4:27531016-27531035 | None:intergenic | 45.0% | |
| TAAAGGGTTTCAGCGAGGTA+AGG | - | chr8_4:27531033-27531052 | None:intergenic | 45.0% | |
| ! | CGGTAGCGTTTTCTTGAGAA+GGG | - | chr8_4:27531068-27531087 | None:intergenic | 45.0% |
| GATCCACAGCCTTCTTTCTT+CGG | + | chr8_4:27531224-27531243 | Msa1321540:CDS | 45.0% | |
| GAATCTTTAACCGTCCTAGG+CGG | - | chr8_4:27531333-27531352 | None:intergenic | 45.0% | |
| ACCATCGTAGCACGATTCAA+CGG | - | chr8_4:27531387-27531406 | None:intergenic | 45.0% | |
| !! | GGTTCAGTTTGGTGTTGTTC+CGG | + | chr8_4:27531404-27531423 | Msa1321540:CDS | 45.0% |
| GATTGTTGAAGATGCTTCCG+CGG | + | chr8_4:27531464-27531483 | Msa1321540:CDS | 45.0% | |
| !! | CACAAAGGTGTTGTGTTGTG+TGG | - | chr8_4:27531736-27531755 | None:intergenic | 45.0% |
| CACAACACAACACCTTTGTG+TGG | + | chr8_4:27531736-27531755 | Msa1321540:intron | 45.0% | |
| TGGCCCAGATTTAATGTCAC+AGG | + | chr8_4:27531756-27531775 | Msa1321540:intron | 45.0% | |
| ! | GAGGCGTTTAAGAAGGTTTC+TGG | + | chr8_4:27532294-27532313 | Msa1321540:CDS | 45.0% |
| !! | TTGCTACTGGTTCGAGTATG+AGG | + | chr8_4:27532346-27532365 | Msa1321540:CDS | 45.0% |
| TATGAGGACGAGGGAAAATG+CGG | + | chr8_4:27532362-27532381 | Msa1321540:CDS | 45.0% | |
| !! | GAGTTGATGAGAGTGATGGT+TGG | + | chr8_4:27532525-27532544 | Msa1321540:CDS | 45.0% |
| !! | GTTGGTGATGTTCGTAGTCA+CGG | + | chr8_4:27532543-27532562 | Msa1321540:CDS | 45.0% |
| ! | GATGGTGATGTTCGTAGTGA+TGG | + | chr8_4:27532597-27532616 | Msa1321540:CDS | 45.0% |
| TCTCCCTCCAACCCAAAAAA+TGG | + | chr8_4:27530861-27530880 | Msa1321540:exon | 45.0% | |
| !!! | CGTCCATTTTTTGGGTTGGA+GGG | - | chr8_4:27530867-27530886 | None:intergenic | 45.0% |
| !!! | GCGGTTTGCGTCCATTTTTT+GGG | - | chr8_4:27530875-27530894 | None:intergenic | 45.0% |
| GTAAGGAATTGCGCCTGATT+CGG | - | chr8_4:27531016-27531035 | None:intergenic | 45.0% | |
| TAAAGGGTTTCAGCGAGGTA+AGG | - | chr8_4:27531033-27531052 | None:intergenic | 45.0% | |
| ! | CGGTAGCGTTTTCTTGAGAA+GGG | - | chr8_4:27531068-27531087 | None:intergenic | 45.0% |
| GATCCACAGCCTTCTTTCTT+CGG | + | chr8_4:27531224-27531243 | Msa1321540:CDS | 45.0% | |
| GAATCTTTAACCGTCCTAGG+CGG | - | chr8_4:27531333-27531352 | None:intergenic | 45.0% | |
| ACCATCGTAGCACGATTCAA+CGG | - | chr8_4:27531387-27531406 | None:intergenic | 45.0% | |
| !! | GGTTCAGTTTGGTGTTGTTC+CGG | + | chr8_4:27531404-27531423 | Msa1321540:CDS | 45.0% |
| GATTGTTGAAGATGCTTCCG+CGG | + | chr8_4:27531464-27531483 | Msa1321540:CDS | 45.0% | |
| !! | CACAAAGGTGTTGTGTTGTG+TGG | - | chr8_4:27531736-27531755 | None:intergenic | 45.0% |
| CACAACACAACACCTTTGTG+TGG | + | chr8_4:27531736-27531755 | Msa1321540:intron | 45.0% | |
| TGGCCCAGATTTAATGTCAC+AGG | + | chr8_4:27531756-27531775 | Msa1321540:intron | 45.0% | |
| ! | GAGGCGTTTAAGAAGGTTTC+TGG | + | chr8_4:27532294-27532313 | Msa1321540:CDS | 45.0% |
| !! | TTGCTACTGGTTCGAGTATG+AGG | + | chr8_4:27532346-27532365 | Msa1321540:CDS | 45.0% |
| TATGAGGACGAGGGAAAATG+CGG | + | chr8_4:27532362-27532381 | Msa1321540:CDS | 45.0% | |
| !! | GAGTTGATGAGAGTGATGGT+TGG | + | chr8_4:27532525-27532544 | Msa1321540:CDS | 45.0% |
| !! | GTTGGTGATGTTCGTAGTCA+CGG | + | chr8_4:27532543-27532562 | Msa1321540:CDS | 45.0% |
| ! | GATGGTGATGTTCGTAGTGA+TGG | + | chr8_4:27532597-27532616 | Msa1321540:CDS | 45.0% |
| !!! | GCGTCCATTTTTTGGGTTGG+AGG | - | chr8_4:27530868-27530887 | None:intergenic | 50.0% |
| !!! | GGCGGTTTGCGTCCATTTTT+TGG | - | chr8_4:27530876-27530895 | None:intergenic | 50.0% |
| CTCGATGAGTGATTCGACTC+GGG | - | chr8_4:27530947-27530966 | None:intergenic | 50.0% | |
| GCTCGATGAGTGATTCGACT+CGG | - | chr8_4:27530948-27530967 | None:intergenic | 50.0% | |
| !! | TGATTCGGCTATAACGGGTC+GGG | - | chr8_4:27531001-27531020 | None:intergenic | 50.0% |
| !! | CTGATTCGGCTATAACGGGT+CGG | - | chr8_4:27531002-27531021 | None:intergenic | 50.0% |
| !! | TGCGCCTGATTCGGCTATAA+CGG | - | chr8_4:27531007-27531026 | None:intergenic | 50.0% |
| ! | GCGGTAGCGTTTTCTTGAGA+AGG | - | chr8_4:27531069-27531088 | None:intergenic | 50.0% |
| AAGAAGGCTGTGGATCGTAG+CGG | - | chr8_4:27531220-27531239 | None:intergenic | 50.0% | |
| CAACCGAAGAAAGAAGGCTG+TGG | - | chr8_4:27531230-27531249 | None:intergenic | 50.0% | |
| TCCGTTGAATCGTGCTACGA+TGG | + | chr8_4:27531383-27531402 | Msa1321540:CDS | 50.0% | |
| CGTGCTACGATGGTTCAGTT+TGG | + | chr8_4:27531393-27531412 | Msa1321540:CDS | 50.0% | |
| ATGAAGCACGGATACGGACA+TGG | + | chr8_4:27531857-27531876 | Msa1321540:intron | 50.0% | |
| CTTGGGGCTTAGGGTCTATT+TGG | - | chr8_4:27532114-27532133 | None:intergenic | 50.0% | |
| !! | GATTTAGGTTGCTGGTTGCG+AGG | + | chr8_4:27532263-27532282 | Msa1321540:intron | 50.0% |
| !! | TGGTTGCGAGGAAAGTGTTG+AGG | + | chr8_4:27532275-27532294 | Msa1321540:CDS | 50.0% |
| !! | GGTTTCTGGTGTTGGAGTGT+TGG | + | chr8_4:27532308-27532327 | Msa1321540:CDS | 50.0% |
| !! | TTCTGGTGTTGGAGTGTTGG+CGG | + | chr8_4:27532311-27532330 | Msa1321540:CDS | 50.0% |
| GATCTGCTCGATCTTGCTAC+TGG | + | chr8_4:27532333-27532352 | Msa1321540:CDS | 50.0% | |
| TGGTTCGAGTATGAGGACGA+GGG | + | chr8_4:27532353-27532372 | Msa1321540:CDS | 50.0% | |
| ! | TGTGAGATGTGGTGGAGATG+TGG | + | chr8_4:27532404-27532423 | Msa1321540:CDS | 50.0% |
| CACGGTGATGTTCGTAGTCA+CGG | + | chr8_4:27532561-27532580 | Msa1321540:CDS | 50.0% | |
| CACGGTGATGTTCGTAGTGA+TGG | + | chr8_4:27532579-27532598 | Msa1321540:CDS | 50.0% | |
| !!! | GCGTCCATTTTTTGGGTTGG+AGG | - | chr8_4:27530868-27530887 | None:intergenic | 50.0% |
| !!! | GGCGGTTTGCGTCCATTTTT+TGG | - | chr8_4:27530876-27530895 | None:intergenic | 50.0% |
| CTCGATGAGTGATTCGACTC+GGG | - | chr8_4:27530947-27530966 | None:intergenic | 50.0% | |
| GCTCGATGAGTGATTCGACT+CGG | - | chr8_4:27530948-27530967 | None:intergenic | 50.0% | |
| !! | TGATTCGGCTATAACGGGTC+GGG | - | chr8_4:27531001-27531020 | None:intergenic | 50.0% |
| !! | CTGATTCGGCTATAACGGGT+CGG | - | chr8_4:27531002-27531021 | None:intergenic | 50.0% |
| !! | TGCGCCTGATTCGGCTATAA+CGG | - | chr8_4:27531007-27531026 | None:intergenic | 50.0% |
| ! | GCGGTAGCGTTTTCTTGAGA+AGG | - | chr8_4:27531069-27531088 | None:intergenic | 50.0% |
| AAGAAGGCTGTGGATCGTAG+CGG | - | chr8_4:27531220-27531239 | None:intergenic | 50.0% | |
| CAACCGAAGAAAGAAGGCTG+TGG | - | chr8_4:27531230-27531249 | None:intergenic | 50.0% | |
| TCCGTTGAATCGTGCTACGA+TGG | + | chr8_4:27531383-27531402 | Msa1321540:CDS | 50.0% | |
| CGTGCTACGATGGTTCAGTT+TGG | + | chr8_4:27531393-27531412 | Msa1321540:CDS | 50.0% | |
| ATGAAGCACGGATACGGACA+TGG | + | chr8_4:27531857-27531876 | Msa1321540:intron | 50.0% | |
| CTTGGGGCTTAGGGTCTATT+TGG | - | chr8_4:27532114-27532133 | None:intergenic | 50.0% | |
| !! | GATTTAGGTTGCTGGTTGCG+AGG | + | chr8_4:27532263-27532282 | Msa1321540:intron | 50.0% |
| !! | TGGTTGCGAGGAAAGTGTTG+AGG | + | chr8_4:27532275-27532294 | Msa1321540:CDS | 50.0% |
| !! | GGTTTCTGGTGTTGGAGTGT+TGG | + | chr8_4:27532308-27532327 | Msa1321540:CDS | 50.0% |
| !! | TTCTGGTGTTGGAGTGTTGG+CGG | + | chr8_4:27532311-27532330 | Msa1321540:CDS | 50.0% |
| GATCTGCTCGATCTTGCTAC+TGG | + | chr8_4:27532333-27532352 | Msa1321540:CDS | 50.0% | |
| TGGTTCGAGTATGAGGACGA+GGG | + | chr8_4:27532353-27532372 | Msa1321540:CDS | 50.0% | |
| ! | TGTGAGATGTGGTGGAGATG+TGG | + | chr8_4:27532404-27532423 | Msa1321540:CDS | 50.0% |
| CACGGTGATGTTCGTAGTCA+CGG | + | chr8_4:27532561-27532580 | Msa1321540:CDS | 50.0% | |
| CACGGTGATGTTCGTAGTGA+TGG | + | chr8_4:27532579-27532598 | Msa1321540:CDS | 50.0% | |
| !! | TTTGGGTTGGAGGGAGAGAG+AGG | - | chr8_4:27530858-27530877 | None:intergenic | 55.0% |
| !! | GCTATAACGGGTCGGGTTGA+TGG | - | chr8_4:27530994-27531013 | None:intergenic | 55.0% |
| CGACCCGTTATAGCCGAATC+AGG | + | chr8_4:27531000-27531019 | Msa1321540:CDS | 55.0% | |
| !! | GCGCCTGATTCGGCTATAAC+GGG | - | chr8_4:27531006-27531025 | None:intergenic | 55.0% |
| GAACCTATCATGTCCACGCG+CGG | + | chr8_4:27531120-27531139 | Msa1321540:CDS | 55.0% | |
| TGCTTCCGCGGTTATTGCAC+AGG | + | chr8_4:27531476-27531495 | Msa1321540:CDS | 55.0% | |
| TGTGTGGCCCAGATGTTGTG+TGG | - | chr8_4:27531693-27531712 | None:intergenic | 55.0% | |
| ACGGATACGGACATGGACAC+CGG | + | chr8_4:27531864-27531883 | Msa1321540:intron | 55.0% | |
| GTCAGTGTCCATGTCATGCC+CGG | - | chr8_4:27531886-27531905 | None:intergenic | 55.0% | |
| ! | CTGGTTCGAGTATGAGGACG+AGG | + | chr8_4:27532352-27532371 | Msa1321540:CDS | 55.0% |
| ! | GAGATGTGGTGGAGATGTGG+TGG | + | chr8_4:27532407-27532426 | Msa1321540:CDS | 55.0% |
| GGCTGGAGATGTAAGAGACG+CGG | + | chr8_4:27532428-27532447 | Msa1321540:CDS | 55.0% | |
| TGGAGATGTAAGAGACGCGG+TGG | + | chr8_4:27532431-27532450 | Msa1321540:CDS | 55.0% | |
| !! | TTTGGGTTGGAGGGAGAGAG+AGG | - | chr8_4:27530858-27530877 | None:intergenic | 55.0% |
| !! | GCTATAACGGGTCGGGTTGA+TGG | - | chr8_4:27530994-27531013 | None:intergenic | 55.0% |
| CGACCCGTTATAGCCGAATC+AGG | + | chr8_4:27531000-27531019 | Msa1321540:CDS | 55.0% | |
| !! | GCGCCTGATTCGGCTATAAC+GGG | - | chr8_4:27531006-27531025 | None:intergenic | 55.0% |
| GAACCTATCATGTCCACGCG+CGG | + | chr8_4:27531120-27531139 | Msa1321540:CDS | 55.0% | |
| TGCTTCCGCGGTTATTGCAC+AGG | + | chr8_4:27531476-27531495 | Msa1321540:CDS | 55.0% | |
| TGTGTGGCCCAGATGTTGTG+TGG | - | chr8_4:27531693-27531712 | None:intergenic | 55.0% | |
| ACGGATACGGACATGGACAC+CGG | + | chr8_4:27531864-27531883 | Msa1321540:intron | 55.0% | |
| GTCAGTGTCCATGTCATGCC+CGG | - | chr8_4:27531886-27531905 | None:intergenic | 55.0% | |
| ! | CTGGTTCGAGTATGAGGACG+AGG | + | chr8_4:27532352-27532371 | Msa1321540:CDS | 55.0% |
| ! | GAGATGTGGTGGAGATGTGG+TGG | + | chr8_4:27532407-27532426 | Msa1321540:CDS | 55.0% |
| GGCTGGAGATGTAAGAGACG+CGG | + | chr8_4:27532428-27532447 | Msa1321540:CDS | 55.0% | |
| TGGAGATGTAAGAGACGCGG+TGG | + | chr8_4:27532431-27532450 | Msa1321540:CDS | 55.0% | |
| ACACCGCGCGTGGACATGAT+AGG | - | chr8_4:27531126-27531145 | None:intergenic | 60.0% | |
| AAGGCTGTGGATCGTAGCGG+CGG | - | chr8_4:27531217-27531236 | None:intergenic | 60.0% | |
| GTCACCGTTCTTCACCGCCT+AGG | + | chr8_4:27531316-27531335 | Msa1321540:CDS | 60.0% | |
| CCGTCCTAGGCGGTGAAGAA+CGG | - | chr8_4:27531323-27531342 | None:intergenic | 60.0% | |
| CCGTTCTTCACCGCCTAGGA+CGG | + | chr8_4:27531320-27531339 | Msa1321540:CDS | 60.0% | |
| CGGATACGGACATGGACACC+GGG | + | chr8_4:27531865-27531884 | Msa1321540:intron | 60.0% | |
| CATGGACACCGGGCATGACA+TGG | + | chr8_4:27531875-27531894 | Msa1321540:intron | 60.0% | |
| !! | GTGTCGGTGTCGTGTTGCGT+CGG | + | chr8_4:27531959-27531978 | Msa1321540:intron | 60.0% |
| ! | GTGTCGTGTTGCGTCGGTGT+CGG | + | chr8_4:27531965-27531984 | Msa1321540:intron | 60.0% |
| ! | TGTGGTGGAGATGTGGTGGC+TGG | + | chr8_4:27532411-27532430 | Msa1321540:CDS | 60.0% |
| GTAAGAGACGCGGTGGCGTT+TGG | + | chr8_4:27532438-27532457 | Msa1321540:CDS | 60.0% | |
| !! | GTGGCGTTTGGTGCGATGGA+TGG | + | chr8_4:27532450-27532469 | Msa1321540:CDS | 60.0% |
| ACACCGCGCGTGGACATGAT+AGG | - | chr8_4:27531126-27531145 | None:intergenic | 60.0% | |
| AAGGCTGTGGATCGTAGCGG+CGG | - | chr8_4:27531217-27531236 | None:intergenic | 60.0% | |
| GTCACCGTTCTTCACCGCCT+AGG | + | chr8_4:27531316-27531335 | Msa1321540:CDS | 60.0% | |
| CCGTCCTAGGCGGTGAAGAA+CGG | - | chr8_4:27531323-27531342 | None:intergenic | 60.0% | |
| CCGTTCTTCACCGCCTAGGA+CGG | + | chr8_4:27531320-27531339 | Msa1321540:CDS | 60.0% | |
| CGGATACGGACATGGACACC+GGG | + | chr8_4:27531865-27531884 | Msa1321540:intron | 60.0% | |
| CATGGACACCGGGCATGACA+TGG | + | chr8_4:27531875-27531894 | Msa1321540:intron | 60.0% | |
| !! | GTGTCGGTGTCGTGTTGCGT+CGG | + | chr8_4:27531959-27531978 | Msa1321540:intron | 60.0% |
| ! | GTGTCGTGTTGCGTCGGTGT+CGG | + | chr8_4:27531965-27531984 | Msa1321540:intron | 60.0% |
| ! | TGTGGTGGAGATGTGGTGGC+TGG | + | chr8_4:27532411-27532430 | Msa1321540:CDS | 60.0% |
| GTAAGAGACGCGGTGGCGTT+TGG | + | chr8_4:27532438-27532457 | Msa1321540:CDS | 60.0% | |
| !! | GTGGCGTTTGGTGCGATGGA+TGG | + | chr8_4:27532450-27532469 | Msa1321540:CDS | 60.0% |
| AATGGACGCAAACCGCCGCG+CGG | + | chr8_4:27530879-27530898 | Msa1321540:exon | 65.0% | |
| ATACTAGCGTCCGCACCGCG+CGG | - | chr8_4:27530897-27530916 | None:intergenic | 65.0% | |
| !! | AGCGGCGGCGGATTGAACAG+CGG | - | chr8_4:27531202-27531221 | None:intergenic | 65.0% |
| AATGGACGCAAACCGCCGCG+CGG | + | chr8_4:27530879-27530898 | Msa1321540:exon | 65.0% | |
| ATACTAGCGTCCGCACCGCG+CGG | - | chr8_4:27530897-27530916 | None:intergenic | 65.0% | |
| !! | AGCGGCGGCGGATTGAACAG+CGG | - | chr8_4:27531202-27531221 | None:intergenic | 65.0% |
| GGATTGAACAGCGGCGGCGG+CGG | - | chr8_4:27531193-27531212 | None:intergenic | 70.0% | |
| !! | GGCGGATTGAACAGCGGCGG+CGG | - | chr8_4:27531196-27531215 | None:intergenic | 70.0% |
| !! | GGCGGCGGATTGAACAGCGG+CGG | - | chr8_4:27531199-27531218 | None:intergenic | 70.0% |
| GCTGTGGATCGTAGCGGCGG+CGG | - | chr8_4:27531214-27531233 | None:intergenic | 70.0% | |
| !! | CGCGGTGGCGTTTGGTGCGA+TGG | + | chr8_4:27532446-27532465 | Msa1321540:CDS | 70.0% |
| GGATTGAACAGCGGCGGCGG+CGG | - | chr8_4:27531193-27531212 | None:intergenic | 70.0% | |
| !! | GGCGGATTGAACAGCGGCGG+CGG | - | chr8_4:27531196-27531215 | None:intergenic | 70.0% |
| !! | GGCGGCGGATTGAACAGCGG+CGG | - | chr8_4:27531199-27531218 | None:intergenic | 70.0% |
| GCTGTGGATCGTAGCGGCGG+CGG | - | chr8_4:27531214-27531233 | None:intergenic | 70.0% | |
| !! | CGCGGTGGCGTTTGGTGCGA+TGG | + | chr8_4:27532446-27532465 | Msa1321540:CDS | 70.0% |
| ACGCAAACCGCCGCGCGGTG+CGG | + | chr8_4:27530884-27530903 | Msa1321540:CDS | 75.0% | |
| CGCGTCGAGAACACCGCGCG+TGG | - | chr8_4:27531136-27531155 | None:intergenic | 75.0% | |
| TTGAACAGCGGCGGCGGCGG+AGG | - | chr8_4:27531190-27531209 | None:intergenic | 75.0% | |
| ACGCAAACCGCCGCGCGGTG+CGG | + | chr8_4:27530884-27530903 | Msa1321540:CDS | 75.0% | |
| CGCGTCGAGAACACCGCGCG+TGG | - | chr8_4:27531136-27531155 | None:intergenic | 75.0% | |
| TTGAACAGCGGCGGCGGCGG+AGG | - | chr8_4:27531190-27531209 | None:intergenic | 75.0% | |
| ! | CTAGCGTCCGCACCGCGCGG+CGG | - | chr8_4:27530894-27530913 | None:intergenic | 80.0% |
| ! | CTAGCGTCCGCACCGCGCGG+CGG | - | chr8_4:27530894-27530913 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 27530634 | 27532689 | 27530634 | ID=Msa1321540;Name=Msa1321540 |
| chr8_4 | mRNA | 27530634 | 27532689 | 27530634 | ID=Msa1321540-mRNA-1;Parent=Msa1321540;Name=Msa1321540-mRNA-1;_AED=0.02;_eAED=0.02;_QI=246|1|0.5|1|1|1|2|0|345 |
| chr8_4 | exon | 27530634 | 27531497 | 27530634 | ID=Msa1321540-mRNA-1:exon:9234;Parent=Msa1321540-mRNA-1 |
| chr8_4 | exon | 27532270 | 27532689 | 27532270 | ID=Msa1321540-mRNA-1:exon:9235;Parent=Msa1321540-mRNA-1 |
| chr8_4 | five_prime_UTR | 27530634 | 27530879 | 27530634 | ID=Msa1321540-mRNA-1:five_prime_utr;Parent=Msa1321540-mRNA-1 |
| chr8_4 | CDS | 27530880 | 27531497 | 27530880 | ID=Msa1321540-mRNA-1:cds;Parent=Msa1321540-mRNA-1 |
| chr8_4 | CDS | 27532270 | 27532689 | 27532270 | ID=Msa1321540-mRNA-1:cds;Parent=Msa1321540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
