Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1188350 | XP_003627885.2 | 96.755 | 339 | 7 | 1 | 1 | 335 | 1 | 339 | 0.0 | 650 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1188350 | sp|Q8GUG9|PUB11_ARATH | 33.106 | 293 | 173 | 9 | 7 | 293 | 332 | 607 | 2.51e-25 | 110 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0004480 | Msa1188350 | 0.857916 | 1.177834e-62 | -8.615850e-47 |
| Msa0006060 | Msa1188350 | 0.812913 | 3.337650e-51 | -8.615850e-47 |
| Msa0026630 | Msa1188350 | 0.827092 | 1.893639e-54 | -8.615850e-47 |
| Msa0033840 | Msa1188350 | -0.830886 | 2.280585e-55 | -8.615850e-47 |
| Msa0043850 | Msa1188350 | 0.853239 | 2.724745e-61 | -8.615850e-47 |
| Msa0044720 | Msa1188350 | 0.817255 | 3.625071e-52 | -8.615850e-47 |
| Msa0052360 | Msa1188350 | 0.812409 | 4.302156e-51 | -8.615850e-47 |
| Msa0061220 | Msa1188350 | 0.800412 | 1.458739e-48 | -8.615850e-47 |
| Msa0077370 | Msa1188350 | 0.829441 | 5.139163e-55 | -8.615850e-47 |
| Msa0082420 | Msa1188350 | 0.811176 | 7.980534e-51 | -8.615850e-47 |
| Msa0090380 | Msa1188350 | 0.823315 | 1.479970e-53 | -8.615850e-47 |
| Msa0090510 | Msa1188350 | 0.854351 | 1.303948e-61 | -8.615850e-47 |
| Msa0094710 | Msa1188350 | 0.838354 | 3.023240e-57 | -8.615850e-47 |
| Msa0097370 | Msa1188350 | 0.806630 | 7.494664e-50 | -8.615850e-47 |
| Msa0097570 | Msa1188350 | 0.803589 | 3.243358e-49 | -8.615850e-47 |
| Msa0113370 | Msa1188350 | -0.802076 | 6.658994e-49 | -8.615850e-47 |
| Msa0115940 | Msa1188350 | 0.802284 | 6.034715e-49 | -8.615850e-47 |
| Msa0117520 | Msa1188350 | 0.801316 | 9.539036e-49 | -8.615850e-47 |
| Msa0611060 | Msa1188350 | 0.810540 | 1.095381e-50 | -8.615850e-47 |
| Msa0628810 | Msa1188350 | 0.801713 | 7.909158e-49 | -8.615850e-47 |
| Msa0639110 | Msa1188350 | 0.802619 | 5.147788e-49 | -8.615850e-47 |
| Msa0641130 | Msa1188350 | 0.828533 | 8.525257e-55 | -8.615850e-47 |
| Msa0654900 | Msa1188350 | 0.802163 | 6.390548e-49 | -8.615850e-47 |
| Msa0679670 | Msa1188350 | 0.833729 | 4.511172e-56 | -8.615850e-47 |
| Msa0693750 | Msa1188350 | 0.809787 | 1.591970e-50 | -8.615850e-47 |
| Msa0697680 | Msa1188350 | 0.845533 | 3.828307e-59 | -8.615850e-47 |
| Msa0698450 | Msa1188350 | 0.805322 | 1.411499e-49 | -8.615850e-47 |
| Msa0698460 | Msa1188350 | 0.806802 | 6.890714e-50 | -8.615850e-47 |
| Msa0734280 | Msa1188350 | 0.819143 | 1.355585e-52 | -8.615850e-47 |
| Msa0734940 | Msa1188350 | 0.866204 | 3.382323e-65 | -8.615850e-47 |
| Msa0743510 | Msa1188350 | 0.805503 | 1.293330e-49 | -8.615850e-47 |
| Msa0744640 | Msa1188350 | 0.807216 | 5.633836e-50 | -8.615850e-47 |
| Msa0769720 | Msa1188350 | 0.811797 | 5.848997e-51 | -8.615850e-47 |
| Msa0782960 | Msa1188350 | 0.829545 | 4.848135e-55 | -8.615850e-47 |
| Msa0798450 | Msa1188350 | 0.808633 | 2.813882e-50 | -8.615850e-47 |
| Msa0807670 | Msa1188350 | 0.810443 | 1.149771e-50 | -8.615850e-47 |
| Msa0807680 | Msa1188350 | 0.808692 | 2.733699e-50 | -8.615850e-47 |
| Msa0810440 | Msa1188350 | 0.817576 | 3.069816e-52 | -8.615850e-47 |
| Msa0841730 | Msa1188350 | 0.807406 | 5.133433e-50 | -8.615850e-47 |
| Msa0137860 | Msa1188350 | 0.820118 | 8.121055e-53 | -8.615850e-47 |
| Msa0137980 | Msa1188350 | 0.846336 | 2.315348e-59 | -8.615850e-47 |
| Msa0170770 | Msa1188350 | 0.807528 | 4.837215e-50 | -8.615850e-47 |
| Msa0183910 | Msa1188350 | 0.841937 | 3.509528e-58 | -8.615850e-47 |
| Msa0187310 | Msa1188350 | 0.805956 | 1.039249e-49 | -8.615850e-47 |
| Msa0196880 | Msa1188350 | 0.812355 | 4.420757e-51 | -8.615850e-47 |
| Msa0223140 | Msa1188350 | 0.800795 | 1.218514e-48 | -8.615850e-47 |
| Msa0224130 | Msa1188350 | 0.853146 | 2.897536e-61 | -8.615850e-47 |
| Msa0364790 | Msa1188350 | 0.810755 | 9.846839e-51 | -8.615850e-47 |
| Msa0366780 | Msa1188350 | 0.804649 | 1.951561e-49 | -8.615850e-47 |
| Msa0414730 | Msa1188350 | 0.813369 | 2.651152e-51 | -8.615850e-47 |
| Msa0427310 | Msa1188350 | 0.822563 | 2.215482e-53 | -8.615850e-47 |
| Msa0428200 | Msa1188350 | 0.813000 | 3.193064e-51 | -8.615850e-47 |
| Msa0474560 | Msa1188350 | 0.803141 | 4.017067e-49 | -8.615850e-47 |
| Msa0982090 | Msa1188350 | -0.805424 | 1.343946e-49 | -8.615850e-47 |
| Msa1011250 | Msa1188350 | 0.841942 | 3.498787e-58 | -8.615850e-47 |
| Msa1016960 | Msa1188350 | 0.833316 | 5.719490e-56 | -8.615850e-47 |
| Msa1031460 | Msa1188350 | 0.843318 | 1.508244e-58 | -8.615850e-47 |
| Msa1044510 | Msa1188350 | 0.801122 | 1.044894e-48 | -8.615850e-47 |
| Msa1058200 | Msa1188350 | 0.820364 | 7.131522e-53 | -8.615850e-47 |
| Msa1070540 | Msa1188350 | 0.854295 | 1.353467e-61 | -8.615850e-47 |
| Msa1089190 | Msa1188350 | 0.835633 | 1.497577e-56 | -8.615850e-47 |
| Msa1101240 | Msa1188350 | 0.856558 | 2.966856e-62 | -8.615850e-47 |
| Msa1106310 | Msa1188350 | 0.800369 | 1.488943e-48 | -8.615850e-47 |
| Msa0265270 | Msa1188350 | 0.851803 | 6.992901e-61 | -8.615850e-47 |
| Msa0276430 | Msa1188350 | 0.833497 | 5.154466e-56 | -8.615850e-47 |
| Msa0277580 | Msa1188350 | 0.805939 | 1.047692e-49 | -8.615850e-47 |
| Msa0280360 | Msa1188350 | 0.801406 | 9.138863e-49 | -8.615850e-47 |
| Msa0302730 | Msa1188350 | 0.806080 | 9.785929e-50 | -8.615850e-47 |
| Msa0305620 | Msa1188350 | 0.808763 | 2.639552e-50 | -8.615850e-47 |
| Msa0310730 | Msa1188350 | -0.808944 | 2.414320e-50 | -8.615850e-47 |
| Msa0316470 | Msa1188350 | 0.810298 | 1.235650e-50 | -8.615850e-47 |
| Msa0332190 | Msa1188350 | 0.800473 | 1.417830e-48 | -8.615850e-47 |
| Msa0332200 | Msa1188350 | 0.811962 | 5.384518e-51 | -8.615850e-47 |
| Msa1109810 | Msa1188350 | 0.821954 | 3.066839e-53 | -8.615850e-47 |
| Msa1180720 | Msa1188350 | 0.804398 | 2.202536e-49 | -8.615850e-47 |
| Msa1183140 | Msa1188350 | 0.827911 | 1.204321e-54 | -8.615850e-47 |
| Msa1188350 | Msa1208990 | 0.843014 | 1.818127e-58 | -8.615850e-47 |
| Msa1188350 | Msa1218160 | 0.814992 | 1.161378e-51 | -8.615850e-47 |
| Msa1188350 | Msa1221220 | 0.802610 | 5.171287e-49 | -8.615850e-47 |
| Msa1188350 | Msa1221240 | 0.804015 | 2.645241e-49 | -8.615850e-47 |
| Msa1188350 | Msa1221960 | 0.824176 | 9.299076e-54 | -8.615850e-47 |
| Msa1188350 | Msa1225580 | 0.803401 | 3.547534e-49 | -8.615850e-47 |
| Msa1188350 | Msa1229480 | 0.815914 | 7.240300e-52 | -8.615850e-47 |
| Msa1188350 | Msa1246790 | 0.809293 | 2.032196e-50 | -8.615850e-47 |
| Msa1188350 | Msa1256330 | 0.813131 | 2.990026e-51 | -8.615850e-47 |
| Msa1188350 | Msa1260060 | 0.808402 | 3.152653e-50 | -8.615850e-47 |
| Msa1188350 | Msa1272010 | 0.840438 | 8.694746e-58 | -8.615850e-47 |
| Msa1188350 | Msa1274380 | 0.808303 | 3.309200e-50 | -8.615850e-47 |
| Msa1188350 | Msa1286220 | 0.807493 | 4.919558e-50 | -8.615850e-47 |
| Msa1188350 | Msa1309760 | 0.840540 | 8.175916e-58 | -8.615850e-47 |
| Msa1188350 | Msa1312440 | 0.810822 | 9.521292e-51 | -8.615850e-47 |
| Msa1188350 | Msa1321540 | 0.829540 | 4.861827e-55 | -8.615850e-47 |
| Msa1188350 | Msa1337850 | 0.803089 | 4.117281e-49 | -8.615850e-47 |
| Msa1188350 | Msa1364080 | 0.845170 | 4.799355e-59 | -8.615850e-47 |
| Msa1188350 | Msa1366390 | 0.827464 | 1.541738e-54 | -8.615850e-47 |
| Msa1188350 | Msa1370420 | 0.817864 | 2.643388e-52 | -8.615850e-47 |
| Msa1188350 | Msa1370810 | 0.818867 | 1.566510e-52 | -8.615850e-47 |
| Msa1188350 | Msa1379020 | 0.830522 | 2.801550e-55 | -8.615850e-47 |
| Msa1188350 | Msa1382380 | -0.803746 | 3.008565e-49 | -8.615850e-47 |
| Msa1188350 | Msa1402350 | 0.817208 | 3.715181e-52 | -8.615850e-47 |
| Msa1188350 | Msa1407880 | 0.850935 | 1.230981e-60 | -8.615850e-47 |
| Msa1188350 | Msa1433410 | 0.827197 | 1.786635e-54 | -8.615850e-47 |
| Msa1188350 | Msa1443620 | 0.847405 | 1.180876e-59 | -8.615850e-47 |
| Msa0517990 | Msa1188350 | 0.830580 | 2.710852e-55 | -8.615850e-47 |
| Msa0529000 | Msa1188350 | 0.822668 | 2.093931e-53 | -8.615850e-47 |
| Msa0545050 | Msa1188350 | 0.835835 | 1.331602e-56 | -8.615850e-47 |
| Msa0549140 | Msa1188350 | 0.815420 | 9.331776e-52 | -8.615850e-47 |
| Msa0560460 | Msa1188350 | 0.807452 | 5.020885e-50 | -8.615850e-47 |
| Msa0584600 | Msa1188350 | 0.803103 | 4.089419e-49 | -8.615850e-47 |
| Msa0587120 | Msa1188350 | 0.800387 | 1.475811e-48 | -8.615850e-47 |
| Msa0588590 | Msa1188350 | 0.833038 | 6.709848e-56 | -8.615850e-47 |
| Msa0588670 | Msa1188350 | 0.800340 | 1.509243e-48 | -8.615850e-47 |
| Msa0588710 | Msa1188350 | 0.814386 | 1.581905e-51 | -8.615850e-47 |
| Msa0592330 | Msa1188350 | 0.808830 | 2.553666e-50 | -8.615850e-47 |
| Msa0600590 | Msa1188350 | 0.829188 | 5.919926e-55 | -8.615850e-47 |
| Msa0843700 | Msa1188350 | 0.815970 | 7.035861e-52 | -8.615850e-47 |
| Msa0852790 | Msa1188350 | 0.801526 | 8.636490e-49 | -8.615850e-47 |
| Msa0862620 | Msa1188350 | 0.809507 | 1.828542e-50 | -8.615850e-47 |
| Msa0863720 | Msa1188350 | 0.818601 | 1.800162e-52 | -8.615850e-47 |
| Msa0863990 | Msa1188350 | 0.800988 | 1.112817e-48 | -8.615850e-47 |
| Msa0945130 | Msa1188350 | 0.827544 | 1.475438e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1188350 | MtrunA17_Chr8g0353271 | 96.755 | 339 | 7 | 1 | 1 | 335 | 1 | 339 | 0.0 | 650 |
| Msa1188350 | MtrunA17_Chr2g0284461 | 31.650 | 297 | 187 | 7 | 1 | 293 | 389 | 673 | 2.07e-27 | 112 |
| Msa1188350 | MtrunA17_Chr5g0437411 | 31.000 | 300 | 184 | 9 | 2 | 293 | 399 | 683 | 3.79e-25 | 106 |
| Msa1188350 | MtrunA17_Chr4g0044411 | 31.944 | 288 | 174 | 10 | 8 | 290 | 373 | 643 | 2.26e-23 | 100 |
| Msa1188350 | MtrunA17_Chr1g0199321 | 31.683 | 303 | 182 | 13 | 2 | 296 | 339 | 624 | 2.70e-21 | 94.7 |
| Msa1188350 | MtrunA17_Chr4g0031431 | 31.987 | 297 | 178 | 11 | 3 | 293 | 348 | 626 | 4.21e-21 | 94.4 |
| Msa1188350 | MtrunA17_Chr7g0248251 | 27.719 | 285 | 190 | 8 | 4 | 286 | 363 | 633 | 8.48e-20 | 90.5 |
| Msa1188350 | MtrunA17_Chr7g0237931 | 29.392 | 296 | 171 | 12 | 10 | 293 | 336 | 605 | 8.49e-19 | 87.4 |
| Msa1188350 | MtrunA17_Chr4g0013091 | 31.818 | 308 | 178 | 12 | 1 | 293 | 406 | 696 | 5.31e-17 | 82.0 |
| Msa1188350 | MtrunA17_Chr3g0106931 | 33.333 | 237 | 139 | 8 | 8 | 239 | 553 | 775 | 6.43e-17 | 82.0 |
| Msa1188350 | MtrunA17_Chr1g0183781 | 27.682 | 289 | 184 | 8 | 8 | 290 | 440 | 709 | 2.73e-16 | 80.1 |
| Msa1188350 | MtrunA17_Chr7g0261371 | 30.690 | 290 | 174 | 11 | 8 | 290 | 514 | 783 | 3.83e-15 | 76.6 |
| Msa1188350 | MtrunA17_Chr2g0280671 | 28.669 | 293 | 185 | 10 | 7 | 293 | 104 | 378 | 2.66e-13 | 70.1 |
| Msa1188350 | MtrunA17_Chr2g0290151 | 28.082 | 292 | 188 | 9 | 7 | 293 | 174 | 448 | 6.54e-13 | 69.3 |
| Msa1188350 | MtrunA17_Chr4g0059201 | 26.871 | 294 | 188 | 10 | 11 | 293 | 425 | 702 | 4.00e-12 | 67.4 |
| Msa1188350 | MtrunA17_Chr1g0152561 | 27.986 | 293 | 187 | 11 | 7 | 293 | 60 | 334 | 1.77e-11 | 64.3 |
| Msa1188350 | MtrunA17_Chr3g0118001 | 27.431 | 288 | 190 | 8 | 10 | 293 | 213 | 485 | 6.45e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1188350 | AT1G08315.1 | 58.654 | 312 | 119 | 4 | 3 | 306 | 4 | 313 | 3.86e-118 | 344 |
| Msa1188350 | AT1G23030.1 | 33.106 | 293 | 173 | 9 | 7 | 293 | 332 | 607 | 2.55e-26 | 110 |
| Msa1188350 | AT1G29340.1 | 31.692 | 325 | 207 | 8 | 1 | 323 | 401 | 712 | 1.21e-25 | 108 |
| Msa1188350 | AT2G23140.3 | 32.986 | 288 | 170 | 9 | 8 | 290 | 354 | 623 | 1.37e-25 | 107 |
| Msa1188350 | AT2G23140.5 | 32.986 | 288 | 170 | 9 | 8 | 290 | 354 | 623 | 1.37e-25 | 107 |
| Msa1188350 | AT2G23140.1 | 33.333 | 288 | 169 | 9 | 8 | 290 | 546 | 815 | 2.82e-25 | 107 |
| Msa1188350 | AT2G23140.2 | 33.333 | 288 | 169 | 9 | 8 | 290 | 543 | 812 | 2.90e-25 | 107 |
| Msa1188350 | AT2G23140.4 | 33.333 | 288 | 169 | 9 | 8 | 290 | 543 | 812 | 2.90e-25 | 107 |
| Msa1188350 | AT1G71020.2 | 31.250 | 304 | 183 | 10 | 8 | 303 | 195 | 480 | 1.18e-20 | 92.8 |
| Msa1188350 | AT1G71020.1 | 31.250 | 304 | 183 | 10 | 8 | 303 | 343 | 628 | 1.32e-20 | 93.2 |
| Msa1188350 | AT5G67340.1 | 30.796 | 289 | 178 | 9 | 8 | 291 | 423 | 694 | 1.45e-19 | 90.1 |
| Msa1188350 | AT5G67340.2 | 30.796 | 289 | 178 | 9 | 8 | 291 | 423 | 694 | 1.45e-19 | 90.1 |
| Msa1188350 | AT3G46510.1 | 30.201 | 298 | 174 | 10 | 12 | 290 | 342 | 624 | 1.87e-19 | 89.7 |
| Msa1188350 | AT2G28830.1 | 29.452 | 292 | 190 | 8 | 2 | 290 | 279 | 557 | 6.89e-19 | 87.8 |
| Msa1188350 | AT3G54850.1 | 30.872 | 298 | 182 | 11 | 2 | 293 | 341 | 620 | 1.10e-17 | 84.3 |
| Msa1188350 | AT3G54790.2 | 30.070 | 286 | 176 | 8 | 11 | 290 | 441 | 708 | 1.62e-16 | 80.9 |
| Msa1188350 | AT3G54790.3 | 30.070 | 286 | 176 | 8 | 11 | 290 | 477 | 744 | 1.86e-16 | 80.9 |
| Msa1188350 | AT3G54790.1 | 30.070 | 286 | 176 | 8 | 11 | 290 | 477 | 744 | 1.86e-16 | 80.9 |
| Msa1188350 | AT5G01830.1 | 31.667 | 300 | 177 | 10 | 1 | 293 | 365 | 643 | 1.13e-15 | 78.6 |
| Msa1188350 | AT5G42340.1 | 28.571 | 287 | 191 | 7 | 8 | 293 | 381 | 654 | 4.27e-15 | 76.6 |
| Msa1188350 | AT5G65200.1 | 27.761 | 335 | 197 | 13 | 11 | 325 | 229 | 538 | 3.26e-13 | 70.9 |
| Msa1188350 | AT3G01400.1 | 30.508 | 295 | 177 | 13 | 7 | 291 | 63 | 339 | 1.23e-12 | 68.6 |
| Msa1188350 | AT5G62560.1 | 27.007 | 274 | 181 | 10 | 25 | 293 | 253 | 512 | 3.41e-11 | 64.7 |
Find 79 sgRNAs with CRISPR-Local
Find 236 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGCGTTTAAGAAGGTTTC+TGG | 0.219872 | 8_1:+28558955 | Msa1188350:CDS |
| TGCGCCTGATTCGGCTATTA+TGG | 0.221489 | 8_1:-28557767 | None:intergenic |
| AAGGGTGTAAAGAAGAATAA+AGG | 0.291422 | 8_1:-28557810 | None:intergenic |
| CTCGATGAGTGATTCGATTC+GGG | 0.324566 | 8_1:-28557707 | None:intergenic |
| GCGCCTGATTCGGCTATTAT+GGG | 0.332670 | 8_1:-28557766 | None:intergenic |
| AACGAATCTTTCACCGTCCT+TGG | 0.340118 | 8_1:-28558096 | None:intergenic |
| ATTGCTGATGTTAAAGATAA+AGG | 0.343931 | 8_1:+28559135 | Msa1188350:CDS |
| TTGAATAGTGATTCGTCGTT+TGG | 0.355196 | 8_1:+28559273 | Msa1188350:CDS |
| GCTATTATGGGTCGGGTTGA+TGG | 0.362162 | 8_1:-28557754 | None:intergenic |
| GGTTCAGTTTGGTGTTGTTC+CGG | 0.382972 | 8_1:+28558167 | Msa1188350:CDS |
| AAAGATAAAGGAAGTGTTAA+GGG | 0.391288 | 8_1:+28559147 | Msa1188350:CDS |
| GTAAGGAATTGCGCCTGATT+CGG | 0.391749 | 8_1:-28557776 | None:intergenic |
| GGATTGAACAGCGGCGGCGG+CGG | 0.408949 | 8_1:-28557953 | None:intergenic |
| GGCGGATTGAACAGCGGCGG+CGG | 0.409584 | 8_1:-28557956 | None:intergenic |
| TTTAAGAAGGTTTCTGGTGT+TGG | 0.413108 | 8_1:+28558961 | Msa1188350:CDS |
| GATGATTATCGTACGGTTGT+TGG | 0.413365 | 8_1:+28558012 | Msa1188350:CDS |
| TAAAGATAAAGGAAGTGTTA+AGG | 0.422699 | 8_1:+28559146 | Msa1188350:CDS |
| CGCGGTGGCGTTTGGTGCGA+TGG | 0.437208 | 8_1:+28559107 | Msa1188350:CDS |
| GCTCGATGAGTGATTCGATT+CGG | 0.440076 | 8_1:-28557708 | None:intergenic |
| AATCATCCACCGACGAAAGA+AGG | 0.447664 | 8_1:-28557996 | None:intergenic |
| GTAAGAGACGCGGTGGCGTT+TGG | 0.449671 | 8_1:+28559099 | Msa1188350:CDS |
| CGACCCATAATAGCCGAATC+AGG | 0.450618 | 8_1:+28557763 | Msa1188350:CDS |
| TTGCTACTGGTTCGAGTATG+AGG | 0.451497 | 8_1:+28559007 | Msa1188350:CDS |
| AAGTGTTGAGGCGTTTAAGA+AGG | 0.460925 | 8_1:+28558948 | Msa1188350:CDS |
| CTCAACACTTTCCTCGCAAC+CGG | 0.466572 | 8_1:-28558935 | None:intergenic |
| TTGAACAGCGGCGGCGGCGG+AGG | 0.468848 | 8_1:-28557950 | None:intergenic |
| ATTGTTAATGATGGTAGAGT+AGG | 0.470952 | 8_1:+28558204 | Msa1188350:CDS |
| AAGTGTTAAGGGGAAGAGTA+AGG | 0.472134 | 8_1:+28559158 | Msa1188350:CDS |
| GATCTGCTCGATCTTGCTAC+TGG | 0.479247 | 8_1:+28558994 | Msa1188350:CDS |
| GTTCGTAGTGATGGTAATGT+TGG | 0.479261 | 8_1:+28559249 | Msa1188350:CDS |
| AGGGTGTAAAGAAGAATAAA+GGG | 0.485644 | 8_1:-28557809 | None:intergenic |
| TGATTCGGCTATTATGGGTC+GGG | 0.485936 | 8_1:-28557761 | None:intergenic |
| CTGATTCGGCTATTATGGGT+CGG | 0.492707 | 8_1:-28557762 | None:intergenic |
| TTGTTAATGATGGTAGAGTA+GGG | 0.494346 | 8_1:+28558205 | Msa1188350:CDS |
| CGTGCTACGATGGTTCAGTT+TGG | 0.504494 | 8_1:+28558156 | Msa1188350:CDS |
| GTGGCGTTTGGTGCGATGGA+TGG | 0.506730 | 8_1:+28559111 | Msa1188350:CDS |
| CTGGTTCGAGTATGAGGACG+AGG | 0.510558 | 8_1:+28559013 | Msa1188350:CDS |
| TGTGGTGGAGATGTGGTGGC+TGG | 0.510838 | 8_1:+28559072 | Msa1188350:CDS |
| ACGCAAACCGCCGCGTCGTA+CGG | 0.526299 | 8_1:+28557647 | Msa1188350:CDS |
| GGTTTCTGGTGTTGGAGTGT+TGG | 0.526980 | 8_1:+28558969 | Msa1188350:CDS |
| TTCTGGTGTTGGAGTGTTGG+CGG | 0.530110 | 8_1:+28558972 | Msa1188350:CDS |
| TCCGTTGAATCGTGCTACGA+TGG | 0.531126 | 8_1:+28558146 | Msa1188350:CDS |
| GAATCTTTCACCGTCCTTGG+CGG | 0.531492 | 8_1:-28558093 | None:intergenic |
| AATGTAGGTCGCCGGTTGCG+AGG | 0.533682 | 8_1:+28558924 | Msa1188350:intron |
| GCTGTGGATCGTAGCGGCGG+CGG | 0.537699 | 8_1:-28557974 | None:intergenic |
| TCTTTCATGAATGAAGATAG+TGG | 0.538879 | 8_1:+28559297 | Msa1188350:CDS |
| TAAAGGGTTTCAGCGAGGTA+AGG | 0.539730 | 8_1:-28557793 | None:intergenic |
| GACGAGGGAAAATGCGGTGT+CGG | 0.541817 | 8_1:+28559029 | Msa1188350:CDS |
| CACGGTGATGTTCGTAGTGA+TGG | 0.549767 | 8_1:+28559222 | Msa1188350:CDS |
| GTCGGTGGATGATTATCGTA+CGG | 0.550224 | 8_1:+28558005 | Msa1188350:CDS |
| CCACAGCCTTCTTTCGTCGG+TGG | 0.555221 | 8_1:+28557990 | Msa1188350:CDS |
| TGTGAGATGTGGTGGAGATG+TGG | 0.560397 | 8_1:+28559065 | Msa1188350:CDS |
| GATCCACAGCCTTCTTTCGT+CGG | 0.561284 | 8_1:+28557987 | Msa1188350:CDS |
| ACCATCGTAGCACGATTCAA+CGG | 0.561289 | 8_1:-28558147 | None:intergenic |
| CCGTCCTTGGCGGTGAAGAA+CGG | 0.564287 | 8_1:-28558083 | None:intergenic |
| CTTAATCTTGTGAGATGTGG+TGG | 0.564928 | 8_1:+28559057 | Msa1188350:CDS |
| TTGCTTAATCTTGTGAGATG+TGG | 0.567457 | 8_1:+28559054 | Msa1188350:CDS |
| GTCACCGTTCTTCACCGCCA+AGG | 0.589598 | 8_1:+28558079 | Msa1188350:CDS |
| GAGTTGATGAGAGTGATGGT+TGG | 0.595956 | 8_1:+28559186 | Msa1188350:CDS |
| GGCGGCGGATTGAACAGCGG+CGG | 0.598501 | 8_1:-28557959 | None:intergenic |
| CCACCGACGAAAGAAGGCTG+TGG | 0.598771 | 8_1:-28557990 | None:intergenic |
| ACATCTCTAATGTAGGTCGC+CGG | 0.601834 | 8_1:+28558916 | Msa1188350:intron |
| GTTGGTGATGTTCGTAGTCA+CGG | 0.603776 | 8_1:+28559204 | Msa1188350:CDS |
| AAGATAAAGGAAGTGTTAAG+GGG | 0.604994 | 8_1:+28559148 | Msa1188350:CDS |
| CCGTTCTTCACCGCCAAGGA+CGG | 0.608476 | 8_1:+28558083 | Msa1188350:CDS |
| GAGATGTGGTGGAGATGTGG+TGG | 0.610433 | 8_1:+28559068 | Msa1188350:CDS |
| GATGGTGATGTTCGTAGTGA+TGG | 0.611434 | 8_1:+28559240 | Msa1188350:CDS |
| TATGAGGACGAGGGAAAATG+CGG | 0.612956 | 8_1:+28559023 | Msa1188350:CDS |
| CGGTTGCGAGGAAAGTGTTG+AGG | 0.634053 | 8_1:+28558936 | Msa1188350:CDS |
| GATTGTTGAAGATGCTTCCG+CGG | 0.638020 | 8_1:+28558227 | Msa1188350:CDS |
| AAGGCTGTGGATCGTAGCGG+CGG | 0.648909 | 8_1:-28557977 | None:intergenic |
| TGGAGATGTAAGAGACGCGG+TGG | 0.667404 | 8_1:+28559092 | Msa1188350:CDS |
| AGCGGCGGCGGATTGAACAG+CGG | 0.667946 | 8_1:-28557962 | None:intergenic |
| ACAATCAACGAAAACAACGC+CGG | 0.685893 | 8_1:-28558186 | None:intergenic |
| AAGAATAAAGGGTTTCAGCG+AGG | 0.686647 | 8_1:-28557798 | None:intergenic |
| GAACCTATCATGTCCACGCG+CGG | 0.689698 | 8_1:+28557883 | Msa1188350:CDS |
| AAGAAGGCTGTGGATCGTAG+CGG | 0.707798 | 8_1:-28557980 | None:intergenic |
| TGGTTCGAGTATGAGGACGA+GGG | 0.725606 | 8_1:+28559014 | Msa1188350:CDS |
| GGCTGGAGATGTAAGAGACG+CGG | 0.727136 | 8_1:+28559089 | Msa1188350:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAAGAAATTGAATTAAATTA+AGG | + | chr8_1:28558414-28558433 | Msa1188350:intron | 15.0% |
| !! | TTTAGTGTAATTATATTTGT+CGG | + | chr8_1:28558623-28558642 | Msa1188350:intron | 15.0% |
| !! | GAAGAAATTGAATTAAATTA+AGG | + | chr8_1:28558414-28558433 | Msa1188350:intron | 15.0% |
| !! | TTTAGTGTAATTATATTTGT+CGG | + | chr8_1:28558623-28558642 | Msa1188350:intron | 15.0% |
| !!! | TTTAGTTGCATAAATTGTTT+TGG | + | chr8_1:28558743-28558762 | Msa1188350:intron | 20.0% |
| !! | AAAAATAAGTCAATTCAAAC+TGG | + | chr8_1:28558769-28558788 | Msa1188350:intron | 20.0% |
| !!! | CTGTCTTATTATATTACTTA+GGG | - | chr8_1:28558854-28558873 | None:intergenic | 20.0% |
| !!! | TTTAGTTGCATAAATTGTTT+TGG | + | chr8_1:28558743-28558762 | Msa1188350:intron | 20.0% |
| !! | AAAAATAAGTCAATTCAAAC+TGG | + | chr8_1:28558769-28558788 | Msa1188350:intron | 20.0% |
| !!! | CTGTCTTATTATATTACTTA+GGG | - | chr8_1:28558854-28558873 | None:intergenic | 20.0% |
| !!! | TTTTCGTTGATTGTTAATGA+TGG | + | chr8_1:28558195-28558214 | Msa1188350:CDS | 25.0% |
| ! | TATTCATAAGCTATGAAACA+CGG | - | chr8_1:28558712-28558731 | None:intergenic | 25.0% |
| ! | TAAAACAACTAACTCTCAAA+CGG | + | chr8_1:28558827-28558846 | Msa1188350:intron | 25.0% |
| !! | GCTGTCTTATTATATTACTT+AGG | - | chr8_1:28558855-28558874 | None:intergenic | 25.0% |
| ! | AAGTAATATAATAAGACAGC+CGG | + | chr8_1:28558855-28558874 | Msa1188350:intron | 25.0% |
| !! | AACTTTTACATCTCTAATGT+AGG | + | chr8_1:28558909-28558928 | Msa1188350:intron | 25.0% |
| ! | ATTGCTGATGTTAAAGATAA+AGG | + | chr8_1:28559135-28559154 | Msa1188350:CDS | 25.0% |
| !!! | TAAAGATAAAGGAAGTGTTA+AGG | + | chr8_1:28559146-28559165 | Msa1188350:CDS | 25.0% |
| !!! | AAAGATAAAGGAAGTGTTAA+GGG | + | chr8_1:28559147-28559166 | Msa1188350:CDS | 25.0% |
| !!! | TTTTCGTTGATTGTTAATGA+TGG | + | chr8_1:28558195-28558214 | Msa1188350:CDS | 25.0% |
| ! | TATTCATAAGCTATGAAACA+CGG | - | chr8_1:28558712-28558731 | None:intergenic | 25.0% |
| ! | TAAAACAACTAACTCTCAAA+CGG | + | chr8_1:28558827-28558846 | Msa1188350:intron | 25.0% |
| !! | GCTGTCTTATTATATTACTT+AGG | - | chr8_1:28558855-28558874 | None:intergenic | 25.0% |
| ! | AAGTAATATAATAAGACAGC+CGG | + | chr8_1:28558855-28558874 | Msa1188350:intron | 25.0% |
| !! | AACTTTTACATCTCTAATGT+AGG | + | chr8_1:28558909-28558928 | Msa1188350:intron | 25.0% |
| ! | ATTGCTGATGTTAAAGATAA+AGG | + | chr8_1:28559135-28559154 | Msa1188350:CDS | 25.0% |
| !!! | TAAAGATAAAGGAAGTGTTA+AGG | + | chr8_1:28559146-28559165 | Msa1188350:CDS | 25.0% |
| !!! | AAAGATAAAGGAAGTGTTAA+GGG | + | chr8_1:28559147-28559166 | Msa1188350:CDS | 25.0% |
| AGGGTGTAAAGAAGAATAAA+GGG | - | chr8_1:28557812-28557831 | None:intergenic | 30.0% | |
| ! | AAGGGTGTAAAGAAGAATAA+AGG | - | chr8_1:28557813-28557832 | None:intergenic | 30.0% |
| ! | GTTCTTTTTCTGTTATGGAA+AGG | - | chr8_1:28557867-28557886 | None:intergenic | 30.0% |
| ! | GATAGGTTCTTTTTCTGTTA+TGG | - | chr8_1:28557872-28557891 | None:intergenic | 30.0% |
| ATTGTTAATGATGGTAGAGT+AGG | + | chr8_1:28558204-28558223 | Msa1188350:CDS | 30.0% | |
| TTGTTAATGATGGTAGAGTA+GGG | + | chr8_1:28558205-28558224 | Msa1188350:CDS | 30.0% | |
| TGTAATTATATTTGTCGGTG+TGG | + | chr8_1:28558628-28558647 | Msa1188350:intron | 30.0% | |
| AAAACAACTAACTCTCAAAC+GGG | + | chr8_1:28558828-28558847 | Msa1188350:intron | 30.0% | |
| TAAGAGTTAGTTGTTCTAAC+CGG | - | chr8_1:28558877-28558896 | None:intergenic | 30.0% | |
| !! | AAGATAAAGGAAGTGTTAAG+GGG | + | chr8_1:28559148-28559167 | Msa1188350:CDS | 30.0% |
| TCTTTCATGAATGAAGATAG+TGG | + | chr8_1:28559297-28559316 | Msa1188350:CDS | 30.0% | |
| AGGGTGTAAAGAAGAATAAA+GGG | - | chr8_1:28557812-28557831 | None:intergenic | 30.0% | |
| ! | AAGGGTGTAAAGAAGAATAA+AGG | - | chr8_1:28557813-28557832 | None:intergenic | 30.0% |
| ! | GTTCTTTTTCTGTTATGGAA+AGG | - | chr8_1:28557867-28557886 | None:intergenic | 30.0% |
| ! | GATAGGTTCTTTTTCTGTTA+TGG | - | chr8_1:28557872-28557891 | None:intergenic | 30.0% |
| ATTGTTAATGATGGTAGAGT+AGG | + | chr8_1:28558204-28558223 | Msa1188350:CDS | 30.0% | |
| TTGTTAATGATGGTAGAGTA+GGG | + | chr8_1:28558205-28558224 | Msa1188350:CDS | 30.0% | |
| TGTAATTATATTTGTCGGTG+TGG | + | chr8_1:28558628-28558647 | Msa1188350:intron | 30.0% | |
| AAAACAACTAACTCTCAAAC+GGG | + | chr8_1:28558828-28558847 | Msa1188350:intron | 30.0% | |
| TAAGAGTTAGTTGTTCTAAC+CGG | - | chr8_1:28558877-28558896 | None:intergenic | 30.0% | |
| !! | AAGATAAAGGAAGTGTTAAG+GGG | + | chr8_1:28559148-28559167 | Msa1188350:CDS | 30.0% |
| TCTTTCATGAATGAAGATAG+TGG | + | chr8_1:28559297-28559316 | Msa1188350:CDS | 30.0% | |
| !!! | GATTCGGGTTTTTTCTGAAA+CGG | - | chr8_1:28557695-28557714 | None:intergenic | 35.0% |
| AGCTTATGAACTATGAAGCA+CGG | + | chr8_1:28558546-28558565 | Msa1188350:intron | 35.0% | |
| TCATGGGATTAGATATGTCT+CGG | - | chr8_1:28558685-28558704 | None:intergenic | 35.0% | |
| CTATCTCATTGTATTACCTG+GGG | - | chr8_1:28558802-28558821 | None:intergenic | 35.0% | |
| GCTATCTCATTGTATTACCT+GGG | - | chr8_1:28558803-28558822 | None:intergenic | 35.0% | |
| AGGTAATACAATGAGATAGC+CGG | + | chr8_1:28558803-28558822 | Msa1188350:intron | 35.0% | |
| !!! | TGAGAGTTAGTTGTTTTAGC+CGG | - | chr8_1:28558825-28558844 | None:intergenic | 35.0% |
| !! | TTTAAGAAGGTTTCTGGTGT+TGG | + | chr8_1:28558961-28558980 | Msa1188350:CDS | 35.0% |
| TTGCTTAATCTTGTGAGATG+TGG | + | chr8_1:28559054-28559073 | Msa1188350:CDS | 35.0% | |
| !!! | TTTTGAGTTGATGAGAGTGA+TGG | + | chr8_1:28559182-28559201 | Msa1188350:CDS | 35.0% |
| TTGAATAGTGATTCGTCGTT+TGG | + | chr8_1:28559273-28559292 | Msa1188350:CDS | 35.0% | |
| !!! | GATTCGGGTTTTTTCTGAAA+CGG | - | chr8_1:28557695-28557714 | None:intergenic | 35.0% |
| AGCTTATGAACTATGAAGCA+CGG | + | chr8_1:28558546-28558565 | Msa1188350:intron | 35.0% | |
| TCATGGGATTAGATATGTCT+CGG | - | chr8_1:28558685-28558704 | None:intergenic | 35.0% | |
| CTATCTCATTGTATTACCTG+GGG | - | chr8_1:28558802-28558821 | None:intergenic | 35.0% | |
| GCTATCTCATTGTATTACCT+GGG | - | chr8_1:28558803-28558822 | None:intergenic | 35.0% | |
| AGGTAATACAATGAGATAGC+CGG | + | chr8_1:28558803-28558822 | Msa1188350:intron | 35.0% | |
| !!! | TGAGAGTTAGTTGTTTTAGC+CGG | - | chr8_1:28558825-28558844 | None:intergenic | 35.0% |
| !! | TTTAAGAAGGTTTCTGGTGT+TGG | + | chr8_1:28558961-28558980 | Msa1188350:CDS | 35.0% |
| TTGCTTAATCTTGTGAGATG+TGG | + | chr8_1:28559054-28559073 | Msa1188350:CDS | 35.0% | |
| !!! | TTTTGAGTTGATGAGAGTGA+TGG | + | chr8_1:28559182-28559201 | Msa1188350:CDS | 35.0% |
| TTGAATAGTGATTCGTCGTT+TGG | + | chr8_1:28559273-28559292 | Msa1188350:CDS | 35.0% | |
| AAGAATAAAGGGTTTCAGCG+AGG | - | chr8_1:28557801-28557820 | None:intergenic | 40.0% | |
| ! | CTGTAGCGTTTTCTTGAGAA+GGG | - | chr8_1:28557831-28557850 | None:intergenic | 40.0% |
| GATGATTATCGTACGGTTGT+TGG | + | chr8_1:28558012-28558031 | Msa1188350:CDS | 40.0% | |
| ACAATCAACGAAAACAACGC+CGG | - | chr8_1:28558189-28558208 | None:intergenic | 40.0% | |
| TGAACTATGAAGCACGGATA+CGG | + | chr8_1:28558552-28558571 | Msa1188350:intron | 40.0% | |
| TATATTTGTCGGTGTGGTGT+TGG | + | chr8_1:28558634-28558653 | Msa1188350:intron | 40.0% | |
| TATGAAACACGGACACTCAT+GGG | - | chr8_1:28558701-28558720 | None:intergenic | 40.0% | |
| ATTGTATTACCTGGGGCTTA+GGG | - | chr8_1:28558795-28558814 | None:intergenic | 40.0% | |
| GGCTATCTCATTGTATTACC+TGG | - | chr8_1:28558804-28558823 | None:intergenic | 40.0% | |
| !! | AAGTGTTGAGGCGTTTAAGA+AGG | + | chr8_1:28558948-28558967 | Msa1188350:CDS | 40.0% |
| CTTAATCTTGTGAGATGTGG+TGG | + | chr8_1:28559057-28559076 | Msa1188350:CDS | 40.0% | |
| AAGTGTTAAGGGGAAGAGTA+AGG | + | chr8_1:28559158-28559177 | Msa1188350:CDS | 40.0% | |
| ! | GTTCGTAGTGATGGTAATGT+TGG | + | chr8_1:28559249-28559268 | Msa1188350:CDS | 40.0% |
| AAGAATAAAGGGTTTCAGCG+AGG | - | chr8_1:28557801-28557820 | None:intergenic | 40.0% | |
| ! | CTGTAGCGTTTTCTTGAGAA+GGG | - | chr8_1:28557831-28557850 | None:intergenic | 40.0% |
| GATGATTATCGTACGGTTGT+TGG | + | chr8_1:28558012-28558031 | Msa1188350:CDS | 40.0% | |
| ACAATCAACGAAAACAACGC+CGG | - | chr8_1:28558189-28558208 | None:intergenic | 40.0% | |
| TGAACTATGAAGCACGGATA+CGG | + | chr8_1:28558552-28558571 | Msa1188350:intron | 40.0% | |
| TATATTTGTCGGTGTGGTGT+TGG | + | chr8_1:28558634-28558653 | Msa1188350:intron | 40.0% | |
| TATGAAACACGGACACTCAT+GGG | - | chr8_1:28558701-28558720 | None:intergenic | 40.0% | |
| ATTGTATTACCTGGGGCTTA+GGG | - | chr8_1:28558795-28558814 | None:intergenic | 40.0% | |
| GGCTATCTCATTGTATTACC+TGG | - | chr8_1:28558804-28558823 | None:intergenic | 40.0% | |
| !! | AAGTGTTGAGGCGTTTAAGA+AGG | + | chr8_1:28558948-28558967 | Msa1188350:CDS | 40.0% |
| CTTAATCTTGTGAGATGTGG+TGG | + | chr8_1:28559057-28559076 | Msa1188350:CDS | 40.0% | |
| AAGTGTTAAGGGGAAGAGTA+AGG | + | chr8_1:28559158-28559177 | Msa1188350:CDS | 40.0% | |
| ! | GTTCGTAGTGATGGTAATGT+TGG | + | chr8_1:28559249-28559268 | Msa1188350:CDS | 40.0% |
| CTCGATGAGTGATTCGATTC+GGG | - | chr8_1:28557710-28557729 | None:intergenic | 45.0% | |
| GCTCGATGAGTGATTCGATT+CGG | - | chr8_1:28557711-28557730 | None:intergenic | 45.0% | |
| ! | TGATTCGGCTATTATGGGTC+GGG | - | chr8_1:28557764-28557783 | None:intergenic | 45.0% |
| !! | CTGATTCGGCTATTATGGGT+CGG | - | chr8_1:28557765-28557784 | None:intergenic | 45.0% |
| GTAAGGAATTGCGCCTGATT+CGG | - | chr8_1:28557779-28557798 | None:intergenic | 45.0% | |
| TAAAGGGTTTCAGCGAGGTA+AGG | - | chr8_1:28557796-28557815 | None:intergenic | 45.0% | |
| ! | GCTGTAGCGTTTTCTTGAGA+AGG | - | chr8_1:28557832-28557851 | None:intergenic | 45.0% |
| AATCATCCACCGACGAAAGA+AGG | - | chr8_1:28557999-28558018 | None:intergenic | 45.0% | |
| GTCGGTGGATGATTATCGTA+CGG | + | chr8_1:28558005-28558024 | Msa1188350:CDS | 45.0% | |
| AACGAATCTTTCACCGTCCT+TGG | - | chr8_1:28558099-28558118 | None:intergenic | 45.0% | |
| ACCATCGTAGCACGATTCAA+CGG | - | chr8_1:28558150-28558169 | None:intergenic | 45.0% | |
| !! | GGTTCAGTTTGGTGTTGTTC+CGG | + | chr8_1:28558167-28558186 | Msa1188350:CDS | 45.0% |
| GATTGTTGAAGATGCTTCCG+CGG | + | chr8_1:28558227-28558246 | Msa1188350:CDS | 45.0% | |
| GCACGGATACGGATATAACA+CGG | + | chr8_1:28558563-28558582 | Msa1188350:intron | 45.0% | |
| CTATGAAACACGGACACTCA+TGG | - | chr8_1:28558702-28558721 | None:intergenic | 45.0% | |
| CATTGTATTACCTGGGGCTT+AGG | - | chr8_1:28558796-28558815 | None:intergenic | 45.0% | |
| ACATCTCTAATGTAGGTCGC+CGG | + | chr8_1:28558916-28558935 | Msa1188350:intron | 45.0% | |
| ! | GAGGCGTTTAAGAAGGTTTC+TGG | + | chr8_1:28558955-28558974 | Msa1188350:CDS | 45.0% |
| !! | TTGCTACTGGTTCGAGTATG+AGG | + | chr8_1:28559007-28559026 | Msa1188350:CDS | 45.0% |
| TATGAGGACGAGGGAAAATG+CGG | + | chr8_1:28559023-28559042 | Msa1188350:CDS | 45.0% | |
| !! | GAGTTGATGAGAGTGATGGT+TGG | + | chr8_1:28559186-28559205 | Msa1188350:CDS | 45.0% |
| !! | GTTGGTGATGTTCGTAGTCA+CGG | + | chr8_1:28559204-28559223 | Msa1188350:CDS | 45.0% |
| ! | GATGGTGATGTTCGTAGTGA+TGG | + | chr8_1:28559240-28559259 | Msa1188350:CDS | 45.0% |
| CTCGATGAGTGATTCGATTC+GGG | - | chr8_1:28557710-28557729 | None:intergenic | 45.0% | |
| GCTCGATGAGTGATTCGATT+CGG | - | chr8_1:28557711-28557730 | None:intergenic | 45.0% | |
| ! | TGATTCGGCTATTATGGGTC+GGG | - | chr8_1:28557764-28557783 | None:intergenic | 45.0% |
| !! | CTGATTCGGCTATTATGGGT+CGG | - | chr8_1:28557765-28557784 | None:intergenic | 45.0% |
| GTAAGGAATTGCGCCTGATT+CGG | - | chr8_1:28557779-28557798 | None:intergenic | 45.0% | |
| TAAAGGGTTTCAGCGAGGTA+AGG | - | chr8_1:28557796-28557815 | None:intergenic | 45.0% | |
| ! | GCTGTAGCGTTTTCTTGAGA+AGG | - | chr8_1:28557832-28557851 | None:intergenic | 45.0% |
| AATCATCCACCGACGAAAGA+AGG | - | chr8_1:28557999-28558018 | None:intergenic | 45.0% | |
| GTCGGTGGATGATTATCGTA+CGG | + | chr8_1:28558005-28558024 | Msa1188350:CDS | 45.0% | |
| AACGAATCTTTCACCGTCCT+TGG | - | chr8_1:28558099-28558118 | None:intergenic | 45.0% | |
| ACCATCGTAGCACGATTCAA+CGG | - | chr8_1:28558150-28558169 | None:intergenic | 45.0% | |
| !! | GGTTCAGTTTGGTGTTGTTC+CGG | + | chr8_1:28558167-28558186 | Msa1188350:CDS | 45.0% |
| GATTGTTGAAGATGCTTCCG+CGG | + | chr8_1:28558227-28558246 | Msa1188350:CDS | 45.0% | |
| GCACGGATACGGATATAACA+CGG | + | chr8_1:28558563-28558582 | Msa1188350:intron | 45.0% | |
| CTATGAAACACGGACACTCA+TGG | - | chr8_1:28558702-28558721 | None:intergenic | 45.0% | |
| CATTGTATTACCTGGGGCTT+AGG | - | chr8_1:28558796-28558815 | None:intergenic | 45.0% | |
| ACATCTCTAATGTAGGTCGC+CGG | + | chr8_1:28558916-28558935 | Msa1188350:intron | 45.0% | |
| ! | GAGGCGTTTAAGAAGGTTTC+TGG | + | chr8_1:28558955-28558974 | Msa1188350:CDS | 45.0% |
| !! | TTGCTACTGGTTCGAGTATG+AGG | + | chr8_1:28559007-28559026 | Msa1188350:CDS | 45.0% |
| TATGAGGACGAGGGAAAATG+CGG | + | chr8_1:28559023-28559042 | Msa1188350:CDS | 45.0% | |
| !! | GAGTTGATGAGAGTGATGGT+TGG | + | chr8_1:28559186-28559205 | Msa1188350:CDS | 45.0% |
| !! | GTTGGTGATGTTCGTAGTCA+CGG | + | chr8_1:28559204-28559223 | Msa1188350:CDS | 45.0% |
| ! | GATGGTGATGTTCGTAGTGA+TGG | + | chr8_1:28559240-28559259 | Msa1188350:CDS | 45.0% |
| !! | GCTATTATGGGTCGGGTTGA+TGG | - | chr8_1:28557757-28557776 | None:intergenic | 50.0% |
| CGACCCATAATAGCCGAATC+AGG | + | chr8_1:28557763-28557782 | Msa1188350:CDS | 50.0% | |
| !! | GCGCCTGATTCGGCTATTAT+GGG | - | chr8_1:28557769-28557788 | None:intergenic | 50.0% |
| !! | TGCGCCTGATTCGGCTATTA+TGG | - | chr8_1:28557770-28557789 | None:intergenic | 50.0% |
| AAGAAGGCTGTGGATCGTAG+CGG | - | chr8_1:28557983-28558002 | None:intergenic | 50.0% | |
| GATCCACAGCCTTCTTTCGT+CGG | + | chr8_1:28557987-28558006 | Msa1188350:CDS | 50.0% | |
| GAATCTTTCACCGTCCTTGG+CGG | - | chr8_1:28558096-28558115 | None:intergenic | 50.0% | |
| TCCGTTGAATCGTGCTACGA+TGG | + | chr8_1:28558146-28558165 | Msa1188350:CDS | 50.0% | |
| CGTGCTACGATGGTTCAGTT+TGG | + | chr8_1:28558156-28558175 | Msa1188350:CDS | 50.0% | |
| CTCAACACTTTCCTCGCAAC+CGG | - | chr8_1:28558938-28558957 | None:intergenic | 50.0% | |
| !! | GGTTTCTGGTGTTGGAGTGT+TGG | + | chr8_1:28558969-28558988 | Msa1188350:CDS | 50.0% |
| !! | TTCTGGTGTTGGAGTGTTGG+CGG | + | chr8_1:28558972-28558991 | Msa1188350:CDS | 50.0% |
| GATCTGCTCGATCTTGCTAC+TGG | + | chr8_1:28558994-28559013 | Msa1188350:CDS | 50.0% | |
| TGGTTCGAGTATGAGGACGA+GGG | + | chr8_1:28559014-28559033 | Msa1188350:CDS | 50.0% | |
| ! | TGTGAGATGTGGTGGAGATG+TGG | + | chr8_1:28559065-28559084 | Msa1188350:CDS | 50.0% |
| CACGGTGATGTTCGTAGTGA+TGG | + | chr8_1:28559222-28559241 | Msa1188350:CDS | 50.0% | |
| !! | GCTATTATGGGTCGGGTTGA+TGG | - | chr8_1:28557757-28557776 | None:intergenic | 50.0% |
| CGACCCATAATAGCCGAATC+AGG | + | chr8_1:28557763-28557782 | Msa1188350:CDS | 50.0% | |
| !! | GCGCCTGATTCGGCTATTAT+GGG | - | chr8_1:28557769-28557788 | None:intergenic | 50.0% |
| !! | TGCGCCTGATTCGGCTATTA+TGG | - | chr8_1:28557770-28557789 | None:intergenic | 50.0% |
| AAGAAGGCTGTGGATCGTAG+CGG | - | chr8_1:28557983-28558002 | None:intergenic | 50.0% | |
| GATCCACAGCCTTCTTTCGT+CGG | + | chr8_1:28557987-28558006 | Msa1188350:CDS | 50.0% | |
| GAATCTTTCACCGTCCTTGG+CGG | - | chr8_1:28558096-28558115 | None:intergenic | 50.0% | |
| TCCGTTGAATCGTGCTACGA+TGG | + | chr8_1:28558146-28558165 | Msa1188350:CDS | 50.0% | |
| CGTGCTACGATGGTTCAGTT+TGG | + | chr8_1:28558156-28558175 | Msa1188350:CDS | 50.0% | |
| CTCAACACTTTCCTCGCAAC+CGG | - | chr8_1:28558938-28558957 | None:intergenic | 50.0% | |
| !! | GGTTTCTGGTGTTGGAGTGT+TGG | + | chr8_1:28558969-28558988 | Msa1188350:CDS | 50.0% |
| !! | TTCTGGTGTTGGAGTGTTGG+CGG | + | chr8_1:28558972-28558991 | Msa1188350:CDS | 50.0% |
| GATCTGCTCGATCTTGCTAC+TGG | + | chr8_1:28558994-28559013 | Msa1188350:CDS | 50.0% | |
| TGGTTCGAGTATGAGGACGA+GGG | + | chr8_1:28559014-28559033 | Msa1188350:CDS | 50.0% | |
| ! | TGTGAGATGTGGTGGAGATG+TGG | + | chr8_1:28559065-28559084 | Msa1188350:CDS | 50.0% |
| CACGGTGATGTTCGTAGTGA+TGG | + | chr8_1:28559222-28559241 | Msa1188350:CDS | 50.0% | |
| ATACTAGCGTCCGTACGACG+CGG | - | chr8_1:28557660-28557679 | None:intergenic | 55.0% | |
| GAACCTATCATGTCCACGCG+CGG | + | chr8_1:28557883-28557902 | Msa1188350:CDS | 55.0% | |
| !! | CGGTTGCGAGGAAAGTGTTG+AGG | + | chr8_1:28558936-28558955 | Msa1188350:CDS | 55.0% |
| ! | CTGGTTCGAGTATGAGGACG+AGG | + | chr8_1:28559013-28559032 | Msa1188350:CDS | 55.0% |
| GACGAGGGAAAATGCGGTGT+CGG | + | chr8_1:28559029-28559048 | Msa1188350:CDS | 55.0% | |
| ! | GAGATGTGGTGGAGATGTGG+TGG | + | chr8_1:28559068-28559087 | Msa1188350:CDS | 55.0% |
| GGCTGGAGATGTAAGAGACG+CGG | + | chr8_1:28559089-28559108 | Msa1188350:CDS | 55.0% | |
| TGGAGATGTAAGAGACGCGG+TGG | + | chr8_1:28559092-28559111 | Msa1188350:CDS | 55.0% | |
| ATACTAGCGTCCGTACGACG+CGG | - | chr8_1:28557660-28557679 | None:intergenic | 55.0% | |
| GAACCTATCATGTCCACGCG+CGG | + | chr8_1:28557883-28557902 | Msa1188350:CDS | 55.0% | |
| !! | CGGTTGCGAGGAAAGTGTTG+AGG | + | chr8_1:28558936-28558955 | Msa1188350:CDS | 55.0% |
| ! | CTGGTTCGAGTATGAGGACG+AGG | + | chr8_1:28559013-28559032 | Msa1188350:CDS | 55.0% |
| GACGAGGGAAAATGCGGTGT+CGG | + | chr8_1:28559029-28559048 | Msa1188350:CDS | 55.0% | |
| ! | GAGATGTGGTGGAGATGTGG+TGG | + | chr8_1:28559068-28559087 | Msa1188350:CDS | 55.0% |
| GGCTGGAGATGTAAGAGACG+CGG | + | chr8_1:28559089-28559108 | Msa1188350:CDS | 55.0% | |
| TGGAGATGTAAGAGACGCGG+TGG | + | chr8_1:28559092-28559111 | Msa1188350:CDS | 55.0% | |
| ACACCGCGCGTGGACATGAT+AGG | - | chr8_1:28557889-28557908 | None:intergenic | 60.0% | |
| AAGGCTGTGGATCGTAGCGG+CGG | - | chr8_1:28557980-28557999 | None:intergenic | 60.0% | |
| CCACCGACGAAAGAAGGCTG+TGG | - | chr8_1:28557993-28558012 | None:intergenic | 60.0% | |
| CCACAGCCTTCTTTCGTCGG+TGG | + | chr8_1:28557990-28558009 | Msa1188350:CDS | 60.0% | |
| GTCACCGTTCTTCACCGCCA+AGG | + | chr8_1:28558079-28558098 | Msa1188350:CDS | 60.0% | |
| CCGTCCTTGGCGGTGAAGAA+CGG | - | chr8_1:28558086-28558105 | None:intergenic | 60.0% | |
| CCGTTCTTCACCGCCAAGGA+CGG | + | chr8_1:28558083-28558102 | Msa1188350:CDS | 60.0% | |
| TCAAACTGGCCCTAAGCCCC+AGG | + | chr8_1:28558783-28558802 | Msa1188350:intron | 60.0% | |
| ! | AATGTAGGTCGCCGGTTGCG+AGG | + | chr8_1:28558924-28558943 | Msa1188350:intron | 60.0% |
| ! | TGTGGTGGAGATGTGGTGGC+TGG | + | chr8_1:28559072-28559091 | Msa1188350:CDS | 60.0% |
| GTAAGAGACGCGGTGGCGTT+TGG | + | chr8_1:28559099-28559118 | Msa1188350:CDS | 60.0% | |
| !! | GTGGCGTTTGGTGCGATGGA+TGG | + | chr8_1:28559111-28559130 | Msa1188350:CDS | 60.0% |
| ACACCGCGCGTGGACATGAT+AGG | - | chr8_1:28557889-28557908 | None:intergenic | 60.0% | |
| AAGGCTGTGGATCGTAGCGG+CGG | - | chr8_1:28557980-28557999 | None:intergenic | 60.0% | |
| CCACCGACGAAAGAAGGCTG+TGG | - | chr8_1:28557993-28558012 | None:intergenic | 60.0% | |
| CCACAGCCTTCTTTCGTCGG+TGG | + | chr8_1:28557990-28558009 | Msa1188350:CDS | 60.0% | |
| GTCACCGTTCTTCACCGCCA+AGG | + | chr8_1:28558079-28558098 | Msa1188350:CDS | 60.0% | |
| CCGTCCTTGGCGGTGAAGAA+CGG | - | chr8_1:28558086-28558105 | None:intergenic | 60.0% | |
| CCGTTCTTCACCGCCAAGGA+CGG | + | chr8_1:28558083-28558102 | Msa1188350:CDS | 60.0% | |
| TCAAACTGGCCCTAAGCCCC+AGG | + | chr8_1:28558783-28558802 | Msa1188350:intron | 60.0% | |
| ! | AATGTAGGTCGCCGGTTGCG+AGG | + | chr8_1:28558924-28558943 | Msa1188350:intron | 60.0% |
| ! | TGTGGTGGAGATGTGGTGGC+TGG | + | chr8_1:28559072-28559091 | Msa1188350:CDS | 60.0% |
| GTAAGAGACGCGGTGGCGTT+TGG | + | chr8_1:28559099-28559118 | Msa1188350:CDS | 60.0% | |
| !! | GTGGCGTTTGGTGCGATGGA+TGG | + | chr8_1:28559111-28559130 | Msa1188350:CDS | 60.0% |
| ACGCAAACCGCCGCGTCGTA+CGG | + | chr8_1:28557647-28557666 | Msa1188350:CDS | 65.0% | |
| !! | AGCGGCGGCGGATTGAACAG+CGG | - | chr8_1:28557965-28557984 | None:intergenic | 65.0% |
| ACGCAAACCGCCGCGTCGTA+CGG | + | chr8_1:28557647-28557666 | Msa1188350:CDS | 65.0% | |
| !! | AGCGGCGGCGGATTGAACAG+CGG | - | chr8_1:28557965-28557984 | None:intergenic | 65.0% |
| CTAGCGTCCGTACGACGCGG+CGG | - | chr8_1:28557657-28557676 | None:intergenic | 70.0% | |
| GGATTGAACAGCGGCGGCGG+CGG | - | chr8_1:28557956-28557975 | None:intergenic | 70.0% | |
| !! | GGCGGATTGAACAGCGGCGG+CGG | - | chr8_1:28557959-28557978 | None:intergenic | 70.0% |
| !! | GGCGGCGGATTGAACAGCGG+CGG | - | chr8_1:28557962-28557981 | None:intergenic | 70.0% |
| GCTGTGGATCGTAGCGGCGG+CGG | - | chr8_1:28557977-28557996 | None:intergenic | 70.0% | |
| !! | CGCGGTGGCGTTTGGTGCGA+TGG | + | chr8_1:28559107-28559126 | Msa1188350:CDS | 70.0% |
| CTAGCGTCCGTACGACGCGG+CGG | - | chr8_1:28557657-28557676 | None:intergenic | 70.0% | |
| GGATTGAACAGCGGCGGCGG+CGG | - | chr8_1:28557956-28557975 | None:intergenic | 70.0% | |
| !! | GGCGGATTGAACAGCGGCGG+CGG | - | chr8_1:28557959-28557978 | None:intergenic | 70.0% |
| !! | GGCGGCGGATTGAACAGCGG+CGG | - | chr8_1:28557962-28557981 | None:intergenic | 70.0% |
| GCTGTGGATCGTAGCGGCGG+CGG | - | chr8_1:28557977-28557996 | None:intergenic | 70.0% | |
| !! | CGCGGTGGCGTTTGGTGCGA+TGG | + | chr8_1:28559107-28559126 | Msa1188350:CDS | 70.0% |
| CGCGTCGAGAACACCGCGCG+TGG | - | chr8_1:28557899-28557918 | None:intergenic | 75.0% | |
| TTGAACAGCGGCGGCGGCGG+AGG | - | chr8_1:28557953-28557972 | None:intergenic | 75.0% | |
| CGCGTCGAGAACACCGCGCG+TGG | - | chr8_1:28557899-28557918 | None:intergenic | 75.0% | |
| TTGAACAGCGGCGGCGGCGG+AGG | - | chr8_1:28557953-28557972 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_1 | gene | 28557643 | 28559332 | 28557643 | ID=Msa1188350;Name=Msa1188350 |
| chr8_1 | mRNA | 28557643 | 28559332 | 28557643 | ID=Msa1188350-mRNA-1;Parent=Msa1188350;Name=Msa1188350-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|0|0|1|1|1|2|0|335 |
| chr8_1 | exon | 28557643 | 28558248 | 28557643 | ID=Msa1188350-mRNA-1:exon:10023;Parent=Msa1188350-mRNA-1 |
| chr8_1 | exon | 28558931 | 28559332 | 28558931 | ID=Msa1188350-mRNA-1:exon:10024;Parent=Msa1188350-mRNA-1 |
| chr8_1 | CDS | 28557643 | 28558248 | 28557643 | ID=Msa1188350-mRNA-1:cds;Parent=Msa1188350-mRNA-1 |
| chr8_1 | CDS | 28558931 | 28559332 | 28558931 | ID=Msa1188350-mRNA-1:cds;Parent=Msa1188350-mRNA-1 |
| Gene Sequence |
| Protein sequence |
