AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1322560

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1322560 MtrunA17_Chr8g0355191 95.312 384 16 1 16 397 14 397 0.0 770
Msa1322560 MtrunA17_Chr8g0355181 71.499 407 92 10 1 403 1 387 0.0 521
Msa1322560 MtrunA17_Chr4g0073521 68.557 194 60 1 33 226 24 216 2.56e-95 290
Msa1322560 MtrunA17_Chr7g0216601 61.947 226 68 3 48 270 56 266 8.37e-92 282
Msa1322560 MtrunA17_Chr4g0002011 59.184 245 69 5 52 265 31 275 3.44e-85 263
Msa1322560 MtrunA17_Chr6g0452911 69.318 176 44 1 61 226 65 240 2.62e-83 260
Msa1322560 MtrunA17_Chr8g0362541 58.921 241 78 4 56 278 68 305 1.61e-80 254
Msa1322560 MtrunA17_Chr5g0400871 65.934 182 57 2 43 221 237 416 1.80e-77 249
Msa1322560 MtrunA17_Chr2g0328971 54.661 236 93 4 5 228 105 338 1.30e-76 247
Msa1322560 MtrunA17_Chr4g0072291 66.864 169 53 1 56 221 158 326 3.04e-76 246
Msa1322560 MtrunA17_Chr3g0135161 59.615 208 77 3 14 221 274 474 2.04e-75 247
Msa1322560 MtrunA17_Chr8g0343851 66.867 166 55 0 56 221 247 412 2.89e-75 244
Msa1322560 MtrunA17_Chr1g0152161 66.867 166 55 0 56 221 311 476 4.34e-75 246
Msa1322560 MtrunA17_Chr7g0249621 66.477 176 56 1 56 228 258 433 4.90e-75 247
Msa1322560 MtrunA17_Chr4g0032631 62.921 178 63 1 56 230 162 339 6.08e-75 243
Msa1322560 MtrunA17_Chr4g0054351 54.386 228 92 5 8 230 267 487 4.44e-72 238
Msa1322560 MtrunA17_Chr5g0412151 67.456 169 52 1 56 221 223 391 1.42e-66 220
Msa1322560 MtrunA17_Chr5g0412151 43.023 86 41 1 153 230 221 306 7.34e-13 70.1
Msa1322560 MtrunA17_Chr8g0367311 69.531 128 39 0 94 221 22 149 9.58e-58 189
Msa1322560 MtrunA17_Chr2g0305821 73.874 111 29 0 57 167 47 157 3.50e-48 161
Msa1322560 MtrunA17_Chr7g0257361 53.552 183 75 4 6 185 8 183 5.37e-47 166
Msa1322560 MtrunA17_Chr7g0263581 46.875 192 86 4 61 244 140 323 1.58e-40 150
Msa1322560 MtrunA17_Chr5g0401891 52.632 171 67 3 61 228 153 312 3.78e-40 149
Msa1322560 MtrunA17_Chr4g0053181 42.437 238 106 5 61 295 177 386 4.29e-40 149
Msa1322560 MtrunA17_Chr4g0030191 45.408 196 93 3 61 253 132 316 1.22e-37 142
Msa1322560 MtrunA17_Chr2g0305831 57.143 98 38 1 163 260 1 94 5.42e-32 120
Msa1322560 MtrunA17_Chr2g0325911 45.550 191 75 4 39 226 113 277 3.01e-30 121
Msa1322560 MtrunA17_Chr3g0126151 40.984 122 61 2 86 197 18 138 1.47e-21 90.1
Msa1322560 MtrunA17_Chr1g0170761 38.411 151 71 5 37 176 106 245 7.09e-12 66.6
Msa1322560 MtrunA17_Chr8g0367321 57.447 47 20 0 47 93 145 191 1.20e-11 63.5
Msa1322560 MtrunA17_Chr5g0432821 40.777 103 54 3 143 241 103 202 5.02e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1322560 AT3G54320.3 52.742 383 136 14 21 375 27 392 3.62e-100 305
Msa1322560 AT3G54320.1 52.742 383 136 14 21 375 27 392 3.72e-100 305
Msa1322560 AT1G79700.2 62.338 231 75 4 45 265 37 265 2.18e-78 245
Msa1322560 AT5G57390.2 60.577 208 74 4 17 221 47 249 5.23e-78 248
Msa1322560 AT5G57390.2 38.835 103 47 2 153 247 79 173 1.09e-11 66.6
Msa1322560 AT5G57390.1 60.476 210 75 4 15 221 163 367 4.11e-77 249
Msa1322560 AT5G57390.1 41.860 86 42 1 153 230 197 282 9.36e-12 67.4
Msa1322560 AT1G16060.1 69.841 189 53 2 45 230 43 230 1.02e-75 239
Msa1322560 AT1G51190.1 64.607 178 60 1 56 230 186 363 5.73e-75 244
Msa1322560 AT1G51190.1 40.741 108 48 3 147 246 178 277 2.60e-12 68.9
Msa1322560 AT5G17430.2 65.341 176 58 1 56 228 144 319 2.65e-74 241
Msa1322560 AT5G17430.2 40.196 102 45 3 153 246 142 235 5.19e-11 64.7
Msa1322560 AT4G37750.1 50.813 246 115 3 14 255 239 482 2.74e-74 242
Msa1322560 AT5G17430.1 65.341 176 58 1 56 228 206 381 6.87e-74 242
Msa1322560 AT5G17430.1 40.196 102 45 3 153 246 204 297 5.02e-11 65.1
Msa1322560 AT3G20840.1 63.636 176 61 1 56 228 177 352 1.89e-73 240
Msa1322560 AT3G20840.1 38.889 108 50 3 147 246 169 268 1.36e-11 66.6
Msa1322560 AT1G72570.1 56.279 215 82 4 12 221 180 387 2.54e-73 235
Msa1322560 AT3G54320.4 50.000 310 108 11 94 375 36 326 3.31e-70 226
Msa1322560 AT3G54320.5 50.000 310 108 11 94 375 36 326 3.31e-70 226
Msa1322560 AT5G65510.4 60.302 199 76 1 26 221 139 337 7.30e-70 227
Msa1322560 AT5G65510.2 60.302 199 76 1 26 221 197 395 1.13e-69 228
Msa1322560 AT5G65510.1 60.302 199 76 1 26 221 197 395 1.13e-69 228
Msa1322560 AT1G79700.1 58.009 231 75 5 45 265 37 255 7.76e-68 218
Msa1322560 AT5G10510.2 60.714 196 76 1 26 221 197 391 3.10e-67 223
Msa1322560 AT5G10510.7 59.799 199 76 2 26 221 197 394 4.05e-65 218
Msa1322560 AT5G10510.7 36.893 103 49 2 153 247 224 318 1.74e-11 66.2
Msa1322560 AT5G10510.5 59.799 199 76 2 26 221 197 394 4.05e-65 218
Msa1322560 AT5G10510.5 36.893 103 49 2 153 247 224 318 1.74e-11 66.2
Msa1322560 AT5G10510.1 59.799 199 76 2 26 221 220 417 5.52e-65 218
Msa1322560 AT5G10510.1 36.893 103 49 2 153 247 247 341 1.67e-11 66.6
Msa1322560 AT5G10510.6 59.799 199 76 2 26 221 235 432 6.44e-65 218
Msa1322560 AT5G10510.6 36.893 103 49 2 153 247 262 356 1.44e-11 66.6
Msa1322560 AT5G10510.4 59.799 199 76 2 26 221 235 432 6.44e-65 218
Msa1322560 AT5G10510.4 36.893 103 49 2 153 247 262 356 1.44e-11 66.6
Msa1322560 AT5G65510.3 58.333 168 67 1 26 190 139 306 5.87e-63 205
Msa1322560 AT5G65510.3 43.023 86 40 2 158 235 172 256 7.82e-12 66.2
Msa1322560 AT5G10510.3 53.881 219 77 2 26 221 235 452 7.58e-61 207
Msa1322560 AT1G79700.4 62.011 179 59 3 94 265 7 183 1.55e-54 181
Msa1322560 AT1G79700.3 62.011 179 59 3 94 265 13 189 1.67e-54 181
Msa1322560 AT1G16060.3 74.453 137 34 1 94 230 25 160 1.15e-51 175
Msa1322560 AT3G54320.2 47.347 245 92 8 134 350 1 236 3.55e-46 161
Msa1322560 AT2G41710.4 41.897 253 134 4 23 272 34 276 1.00e-45 164
Msa1322560 AT2G41710.1 41.897 253 134 4 23 272 34 276 1.19e-45 163
Msa1322560 AT2G41710.2 41.085 258 134 5 23 272 34 281 1.82e-43 157
Msa1322560 AT1G16060.2 78.351 97 20 1 134 230 1 96 2.16e-40 143
Msa1322560 AT1G16060.4 78.351 97 20 1 134 230 1 96 2.16e-40 143
Msa1322560 AT1G16060.6 78.351 97 20 1 134 230 1 96 2.16e-40 143
Msa1322560 AT1G16060.5 78.351 97 20 1 134 230 1 96 2.16e-40 143
Msa1322560 AT4G36920.1 52.047 171 68 3 61 228 132 291 2.89e-40 149
Msa1322560 AT4G36920.2 52.047 171 68 3 61 228 132 291 2.89e-40 149
Msa1322560 AT5G67180.2 47.150 193 90 3 61 253 97 277 4.94e-40 145
Msa1322560 AT2G28550.3 50.000 174 73 3 61 231 154 316 1.09e-39 148
Msa1322560 AT5G67180.3 52.174 161 69 2 61 221 97 249 1.62e-39 143
Msa1322560 AT5G67180.1 47.150 193 90 3 61 253 97 277 2.38e-39 144
Msa1322560 AT2G41710.3 36.806 288 134 5 23 272 34 311 3.44e-39 146
Msa1322560 AT2G28550.4 50.365 137 60 2 61 197 154 282 1.12e-30 120
Msa1322560 AT2G28550.1 45.977 174 65 4 61 231 154 301 1.29e-30 122
Msa1322560 AT5G67180.4 50.365 137 60 2 61 197 97 225 3.48e-30 117
Msa1322560 AT2G28550.2 50.794 126 48 3 61 183 154 268 7.69e-25 103
Msa1322560 AT2G28550.6 50.794 126 48 3 61 183 154 268 7.69e-25 103
Msa1322560 AT1G16060.7 72.973 74 19 1 157 230 2 74 2.29e-23 97.1
Msa1322560 AT2G28550.5 46.377 138 58 2 94 231 14 135 2.33e-23 99.4
Msa1322560 AT2G39250.2 43.443 122 62 1 40 161 88 202 3.24e-21 92.4
Msa1322560 AT2G39250.1 43.443 122 62 1 40 161 88 202 5.85e-21 93.6
Msa1322560 AT5G60120.4 45.185 135 66 2 48 182 148 274 7.81e-20 91.3
Msa1322560 AT5G60120.3 45.185 135 66 2 48 182 148 274 7.81e-20 91.3
Msa1322560 AT5G60120.5 45.185 135 66 2 48 182 148 274 7.81e-20 91.3
Msa1322560 AT5G60120.6 45.652 138 61 3 48 182 148 274 1.23e-19 91.3
Msa1322560 AT5G60120.1 45.652 138 61 3 48 182 148 274 1.30e-19 91.3
Msa1322560 AT5G60120.2 45.652 138 61 3 48 182 148 274 1.45e-19 91.3
Msa1322560 AT3G54990.2 45.192 104 50 1 61 164 123 219 2.92e-16 78.6
Msa1322560 AT3G54990.1 45.192 104 50 1 61 164 123 219 9.02e-16 78.6
Msa1322560 AT4G27950.1 39.423 104 55 4 159 261 117 213 3.57e-11 64.7

Find 84 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTAACAAATACCTCTATT+TGG 0.186609 8_4:-29710091 Msa1322560:CDS
CCTTGTAACTCCTCTGTAAA+TGG 0.235394 8_4:+29712478 None:intergenic
TCCAATGCTTCTTCGGAATC+AGG 0.245762 8_4:+29707790 None:intergenic
TCATCATCTTCATCTTCTAT+TGG 0.261290 8_4:-29712626 Msa1322560:CDS
CCATGGAACTTCATGTATAA+TGG 0.261889 8_4:-29707625 Msa1322560:CDS
GAAGATTTGAAGCTCATCTA+TGG 0.274505 8_4:-29712314 Msa1322560:CDS
ATGCGCAATAGTTAATATTA+TGG 0.304733 8_4:-29707671 Msa1322560:CDS
TATCAATATCGGTGAAGTTT+TGG 0.306250 8_4:-29707449 Msa1322560:CDS
TTCTACTGCCACCATTTGTT+TGG 0.309446 8_4:+29712507 None:intergenic
ATCTATGGGATAAGACTTCT+TGG 0.321379 8_4:-29712299 Msa1322560:CDS
TGCAAAAGAGTTTGAGGAAA+TGG 0.326215 8_4:-29710817 Msa1322560:CDS
GTAGTTGCTTATATCAAAAT+TGG 0.328027 8_4:+29707894 None:intergenic
TCTTGCAGCACTCAAGTATT+GGG 0.356416 8_4:-29711534 Msa1322560:CDS
TTGTTCTTCCAATGCTTCTT+CGG 0.362093 8_4:+29707783 None:intergenic
GAGCTTCCCACCGACCATTA+TGG 0.381198 8_4:+29710130 None:intergenic
GATTTAATGAATATATTTGA+TGG 0.394335 8_4:-29707550 Msa1322560:CDS
TTGAATAGGCATCACCATAA+TGG 0.407675 8_4:-29710144 Msa1322560:intron
GGTAACAAATACCTCTATTT+GGG 0.408649 8_4:-29710090 Msa1322560:CDS
TTGGAGGGTATTGATCTTTG+TGG 0.411525 8_4:-29707430 Msa1322560:CDS
CTAAATACCGTGGGGTTGCC+AGG 0.413317 8_4:-29710725 Msa1322560:intron
GGCAGCAGTGGCTTATGATA+TGG 0.413991 8_4:-29707950 Msa1322560:CDS
CTTGAGTGCTGCAAGATCAT+AGG 0.421646 8_4:+29711541 None:intergenic
ATCTTGCAGCACTCAAGTAT+TGG 0.430524 8_4:-29711535 Msa1322560:CDS
AAATCAAGATGCCGGAGATA+TGG 0.435000 8_4:-29707398 Msa1322560:CDS
AACTTATGCAAAAGAGTTTG+AGG 0.450069 8_4:-29710823 Msa1322560:CDS
CCCTGATTCCGAAGAAGCAT+TGG 0.450167 8_4:-29707791 Msa1322560:CDS
AAGAGTATTTGAACTCTTTG+CGG 0.450951 8_4:-29710779 Msa1322560:CDS
TACTGTATGTGCCCAAATAG+AGG 0.461718 8_4:+29710079 None:intergenic
CCAATGCTTCTTCGGAATCA+GGG 0.466066 8_4:+29707791 None:intergenic
CCATTTACAGAGGAGTTACA+AGG 0.477815 8_4:-29712478 Msa1322560:intron
TGAAGTTCCATGGATAATCT+TGG 0.478395 8_4:+29707635 None:intergenic
GGTGAAAGTGATATCAATAT+CGG 0.479712 8_4:-29707460 Msa1322560:CDS
ATTGCGCATTCATGACTAGT+TGG 0.500701 8_4:+29707685 None:intergenic
AACTCAAGAAGAGGCAGCAG+TGG 0.504028 8_4:-29707962 Msa1322560:CDS
CAACTACATGGACAAATTGA+AGG 0.505278 8_4:-29707878 Msa1322560:CDS
CAAATTAGACATAGGTGGAC+TGG 0.506410 8_4:-29712336 Msa1322560:intron
CTCATCCGCAACCATATCTC+CGG 0.510091 8_4:+29707387 None:intergenic
TTTGTATCATTCAAATGAAG+AGG 0.512964 8_4:-29712667 None:intergenic
ACTGTAGTGGTTGAAGATGA+TGG 0.521228 8_4:+29707313 None:intergenic
CCATTATACATGAAGTTCCA+TGG 0.525199 8_4:+29707625 None:intergenic
ACAATTTCTGTGTTTGATTG+TGG 0.530549 8_4:+29707823 None:intergenic
CTGTAGTGGTTGAAGATGAT+GGG 0.533520 8_4:+29707314 None:intergenic
GAACAAGATTCAGAACAAGA+AGG 0.536583 8_4:-29712277 Msa1322560:CDS
GAGGGTATTGATCTTTGTGG+AGG 0.540704 8_4:-29707427 Msa1322560:CDS
GAGGACTTTCTAAATACCGT+GGG 0.549435 8_4:-29710734 Msa1322560:CDS
TATTGAAGAAACTCAAGAAG+AGG 0.551880 8_4:-29707971 Msa1322560:intron
TGTTGAAATTGTTGCTGCGA+AGG 0.552067 8_4:+29707715 None:intergenic
GGTCGGTGGGAAGCTCGCAT+TGG 0.557991 8_4:-29710123 Msa1322560:CDS
TTGTTAGAGTTTCAAGACAC+AGG 0.560148 8_4:-29707601 Msa1322560:CDS
TTGATCAAATTAGACATAGG+TGG 0.563648 8_4:-29712341 Msa1322560:intron
GCTTATATCAAAATTGGTCA+CGG 0.566773 8_4:+29707900 None:intergenic
GCTCGCATTGGAAGAGTTCG+TGG 0.568186 8_4:-29710111 Msa1322560:CDS
GCGCATTCATGACTAGTTGG+AGG 0.568657 8_4:+29707688 None:intergenic
AAGATTTGAAGCTCATCTAT+GGG 0.572069 8_4:-29712313 Msa1322560:CDS
CAGAACAAGAAGGGAAAACA+AGG 0.573233 8_4:-29712267 Msa1322560:intron
GATGATGAACTTGAAGATGG+TGG 0.574022 8_4:+29712641 None:intergenic
TGAGAATAGTAACAAGGAGA+AGG 0.577773 8_4:-29707368 Msa1322560:CDS
GAAGAACCTTGTGGTGGTCG+TGG 0.579789 8_4:-29707481 Msa1322560:CDS
AACAAGATTCAGAACAAGAA+GGG 0.581787 8_4:-29712276 Msa1322560:CDS
CAATGCTTCTTCGGAATCAG+GGG 0.588294 8_4:+29707792 None:intergenic
GGATTATTAAATCAAGATGC+CGG 0.588355 8_4:-29707406 Msa1322560:CDS
GAAGATGATGAACTTGAAGA+TGG 0.588912 8_4:+29712638 None:intergenic
GGCATCACCATAATGGTCGG+TGG 0.592230 8_4:-29710137 Msa1322560:CDS
CTTGCAGCACTCAAGTATTG+GGG 0.601900 8_4:-29711533 Msa1322560:CDS
TCTTTGCGGCGGCAAAGCAG+TGG 0.603859 8_4:-29710765 Msa1322560:CDS
GCATCACCATAATGGTCGGT+GGG 0.611752 8_4:-29710136 Msa1322560:CDS
AGAGGACTTTCTAAATACCG+TGG 0.626454 8_4:-29710735 Msa1322560:CDS
AGATGCCGGAGATATGGTTG+CGG 0.636719 8_4:-29707392 Msa1322560:CDS
TTGCAGCACTCAAGTATTGG+GGG 0.650524 8_4:-29711532 Msa1322560:CDS
GATCTAACCTGGCAACCCCA+CGG 0.652639 8_4:+29710718 None:intergenic
AGAAGAAGCTCCATTTACAG+AGG 0.653025 8_4:-29712488 Msa1322560:CDS
CTTTCACCACGACCACCACA+AGG 0.654037 8_4:+29707475 None:intergenic
AGTATTTGAACTCTTTGCGG+CGG 0.655198 8_4:-29710776 Msa1322560:CDS
CTACATGGACAAATTGAAGG+TGG 0.658749 8_4:-29707875 Msa1322560:CDS
TGTAGTGGTTGAAGATGATG+GGG 0.666549 8_4:+29707315 None:intergenic
ATAGGCATCACCATAATGGT+CGG 0.667124 8_4:-29710140 Msa1322560:intron
TAGTTACAAAGAAACTGTAG+TGG 0.679816 8_4:+29707300 None:intergenic
GGTTCGACTATGAGCAAATG+CGG 0.681506 8_4:-29707580 Msa1322560:CDS
ATTTGAACTTATGTTCAACA+CGG 0.681855 8_4:-29707503 Msa1322560:CDS
TGCGGATGAGAATAGTAACA+AGG 0.687710 8_4:-29707374 Msa1322560:CDS
AACACGGAAGAACCTTGTGG+TGG 0.703150 8_4:-29707487 Msa1322560:CDS
AGGACTTTCTAAATACCGTG+GGG 0.721413 8_4:-29710733 Msa1322560:CDS
TTCAACACGGAAGAACCTTG+TGG 0.731490 8_4:-29707490 Msa1322560:CDS
ATGGCAGCAATAAAGCACAG+AGG 0.789593 8_4:-29707931 Msa1322560:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAAATTATTATTGATTTG+TGG - chr8_4:29708317-29708336 Msa1322560:intron 10.0%
!!! ATTATTTAGTATTTCTAAAT+TGG - chr8_4:29708476-29708495 Msa1322560:intron 10.0%
!! ATATGTTAAATTAAATTGTA+CGG + chr8_4:29709051-29709070 None:intergenic 10.0%
!! ATAATATTATTAAAGTAATG+TGG + chr8_4:29709702-29709721 None:intergenic 10.0%
!!! AAACAATTTTTGATAAAAAA+TGG + chr8_4:29709927-29709946 None:intergenic 10.0%
!! TATATAATTAATATGAAACA+TGG + chr8_4:29710273-29710292 None:intergenic 10.0%
!!! AAGATTTTTTTTATTAAAAG+TGG + chr8_4:29711010-29711029 None:intergenic 10.0%
!!! ACATATTTTCATTTTTATTA+TGG + chr8_4:29711241-29711260 None:intergenic 10.0%
!! TAAAAAGTTAACTAAAAAAA+TGG - chr8_4:29711304-29711323 Msa1322560:intron 10.0%
!!! TTTTGAAGTTAATTTAAAAT+TGG + chr8_4:29711517-29711536 None:intergenic 10.0%
!!! CTGATGAATTTTTTATTATT+TGG - chr8_4:29707976-29707995 Msa1322560:intron 15.0%
!!! GAAATACTAAATAATTTTAC+CGG + chr8_4:29708471-29708490 None:intergenic 15.0%
!!! TTATTTTTCCAAAACAATAT+AGG + chr8_4:29708522-29708541 None:intergenic 15.0%
!!! TATTTTTTAGAGATTGATAT+TGG - chr8_4:29708778-29708797 Msa1322560:intron 15.0%
!!! ATTTTCTGTGTTAATTTTAA+TGG - chr8_4:29709024-29709043 Msa1322560:intron 15.0%
!!! TTTTCTGTGTTAATTTTAAT+GGG - chr8_4:29709025-29709044 Msa1322560:intron 15.0%
!!! ATTAATCTTACTTTTTGAAT+AGG - chr8_4:29709798-29709817 Msa1322560:intron 15.0%
!! ACATAATTTAGTGTAATTAT+AGG - chr8_4:29710189-29710208 Msa1322560:intron 15.0%
!!! ATTAGTATAATTTTACACTA+AGG + chr8_4:29710662-29710681 None:intergenic 15.0%
!!! TTTTTTTTGTCTTCTTTTTT+TGG - chr8_4:29710809-29710828 Msa1322560:CDS 15.0%
!! TTTCACTATTATTATATTCT+AGG - chr8_4:29711260-29711279 Msa1322560:intron 15.0%
!! GATTTAATGAATATATTTGA+TGG - chr8_4:29712406-29712425 Msa1322560:intron 15.0%
!!! TTTTTTTTCACTGATTGAAT+TGG + chr8_4:29707366-29707385 None:intergenic 20.0%
!! AATTCAATCAGTGAAAAAAA+AGG - chr8_4:29707365-29707384 Msa1322560:CDS 20.0%
!! ATTCAATCAGTGAAAAAAAA+GGG - chr8_4:29707366-29707385 Msa1322560:CDS 20.0%
!!! ACTATGTTTTTTTTAGTGTT+TGG - chr8_4:29707719-29707738 Msa1322560:CDS 20.0%
!!! TTTCAAATTATTTTCCGTAT+CGG + chr8_4:29707817-29707836 None:intergenic 20.0%
!! ATATAATTCAGTGTAATCAT+AGG - chr8_4:29707844-29707863 Msa1322560:CDS 20.0%
!! AGATTCTGATTAACTTAATT+TGG - chr8_4:29708342-29708361 Msa1322560:intron 20.0%
!! TTTGGTTATTATGTTGATAT+AGG - chr8_4:29708360-29708379 Msa1322560:intron 20.0%
!!! TAATTTTACCGGAAAATTTA+AGG + chr8_4:29708460-29708479 None:intergenic 20.0%
!! AATTGGTCAATAAAAGTAAA+TGG - chr8_4:29708493-29708512 Msa1322560:intron 20.0%
!! TTGTTGAAAATTTCAAACAT+TGG + chr8_4:29708643-29708662 None:intergenic 20.0%
!! TCAACAATAACATTAATACA+TGG - chr8_4:29708656-29708675 Msa1322560:intron 20.0%
!! CTAAAAAATAGTTCAAAGAA+GGG + chr8_4:29708768-29708787 None:intergenic 20.0%
!! TCTAAAAAATAGTTCAAAGA+AGG + chr8_4:29708769-29708788 None:intergenic 20.0%
!!! GAATATTATTGACTATTAGA+CGG + chr8_4:29708845-29708864 None:intergenic 20.0%
!! TCTATGGAAAAAAATTAGTT+AGG + chr8_4:29708908-29708927 None:intergenic 20.0%
!! ATAATATTATGTACATGACT+TGG - chr8_4:29709712-29709731 Msa1322560:intron 20.0%
!!! CAAAAATTGTTTCAAACTTT+TGG - chr8_4:29709935-29709954 Msa1322560:intron 20.0%
!! TACTATCATAGTTTGATATT+GGG + chr8_4:29710776-29710795 None:intergenic 20.0%
!! ACAAAAAAAATATTGTTGAC+AGG + chr8_4:29710799-29710818 None:intergenic 20.0%
!! TTGTTTATAGTAACATTGTA+CGG + chr8_4:29711541-29711560 None:intergenic 20.0%
!! CATATATTTAACCATGAATT+TGG + chr8_4:29711861-29711880 None:intergenic 20.0%
!!! TTGACATTGAGATTCTTTTT+TGG + chr8_4:29707402-29707421 None:intergenic 25.0%
! TGTTTGATCAAATTAGACAT+AGG - chr8_4:29707612-29707631 Msa1322560:CDS 25.0%
! GATTTGCAAAGAATAAAACA+AGG + chr8_4:29708171-29708190 None:intergenic 25.0%
!!! AAAAATAAGAAGCATCTAGT+TGG - chr8_4:29708534-29708553 Msa1322560:intron 25.0%
! GTCATTTCAAATAATTTCCA+AGG - chr8_4:29708586-29708605 Msa1322560:intron 25.0%
!!! ATATAATGATTCTTTGAAGC+AGG + chr8_4:29708683-29708702 None:intergenic 25.0%
! ATAGTCAATAATATTCGTTG+AGG - chr8_4:29708849-29708868 Msa1322560:intron 25.0%
! AATTTATGAGACACAAAAAG+TGG - chr8_4:29708872-29708891 Msa1322560:intron 25.0%
! ATTTATGAGACACAAAAAGT+GGG - chr8_4:29708873-29708892 Msa1322560:intron 25.0%
! ATTTCTTAAATAGACGATCA+GGG + chr8_4:29708938-29708957 None:intergenic 25.0%
! AATTTCTTAAATAGACGATC+AGG + chr8_4:29708939-29708958 None:intergenic 25.0%
! ATAGATGTATCTATCTTACA+TGG + chr8_4:29709004-29709023 None:intergenic 25.0%
! ATGAATATGTTACTAACTTG+TGG - chr8_4:29709092-29709111 Msa1322560:intron 25.0%
! TAAATTTGAATGATCTAACC+TGG + chr8_4:29709252-29709271 None:intergenic 25.0%
! TACATGTTTGATATCACATT+AGG - chr8_4:29709413-29709432 Msa1322560:intron 25.0%
!!! TGTAGTTTTTTGCAAAATCA+AGG + chr8_4:29709462-29709481 None:intergenic 25.0%
! ATGATTCATGTTTGATATCA+CGG + chr8_4:29709531-29709550 None:intergenic 25.0%
!!! AAAATGGTAATGGTACAAAT+TGG + chr8_4:29709571-29709590 None:intergenic 25.0%
!! TACCATTACCATTTTATCAA+TGG - chr8_4:29709576-29709595 Msa1322560:intron 25.0%
! TTTAGTGTAATTATAGGTGT+TGG - chr8_4:29710195-29710214 Msa1322560:intron 25.0%
!!! TAGTTTTACAAGCTGTAATT+TGG + chr8_4:29710416-29710435 None:intergenic 25.0%
!! TAAATTTTCCTATGTTCCTA+TGG + chr8_4:29710584-29710603 None:intergenic 25.0%
! GTACTATCATAGTTTGATAT+TGG + chr8_4:29710777-29710796 None:intergenic 25.0%
!!! TATTGTATTATTTTGCCATG+TGG - chr8_4:29711038-29711057 Msa1322560:intron 25.0%
! TATTATGGTTTCACAAGATT+GGG + chr8_4:29711226-29711245 None:intergenic 25.0%
! TTATTATGGTTTCACAAGAT+TGG + chr8_4:29711227-29711246 None:intergenic 25.0%
! GTAGTTGCTTATATCAAAAT+TGG + chr8_4:29712065-29712084 None:intergenic 25.0%
!! TTTTGATATAAGCAACTACA+TGG - chr8_4:29712066-29712085 Msa1322560:intron 25.0%
!!! ATTTGTAGTTGATTTTCTTG+TGG + chr8_4:29712217-29712236 None:intergenic 25.0%
! ATGCGCAATAGTTAATATTA+TGG - chr8_4:29712285-29712304 Msa1322560:CDS 25.0%
! ATTTGAACTTATGTTCAACA+CGG - chr8_4:29712453-29712472 Msa1322560:intron 25.0%
TCATCATCTTCATCTTCTAT+TGG - chr8_4:29707330-29707349 Msa1322560:CDS 30.0%
CAGAAGAAAAACCAAACAAA+TGG - chr8_4:29707438-29707457 Msa1322560:CDS 30.0%
AAGAAAAACCAAACAAATGG+TGG - chr8_4:29707441-29707460 Msa1322560:CDS 30.0%
! ACCCTTTTGAATTTTGTTGA+TGG - chr8_4:29707557-29707576 Msa1322560:CDS 30.0%
CCCATCAACAAAATTCAAAA+GGG + chr8_4:29707561-29707580 None:intergenic 30.0%
! CCCTTTTGAATTTTGTTGAT+GGG - chr8_4:29707558-29707577 Msa1322560:CDS 30.0%
ACCCATCAACAAAATTCAAA+AGG + chr8_4:29707562-29707581 None:intergenic 30.0%
TTGATCAAATTAGACATAGG+TGG - chr8_4:29707615-29707634 Msa1322560:CDS 30.0%
! AAGATTTGAAGCTCATCTAT+GGG - chr8_4:29707643-29707662 Msa1322560:CDS 30.0%
AACAAGATTCAGAACAAGAA+GGG - chr8_4:29707680-29707699 Msa1322560:CDS 30.0%
AGACAAGTTAGAGAAAATCA+AGG - chr8_4:29708055-29708074 Msa1322560:intron 30.0%
! AATGGAGTCCTATATTGTTT+TGG - chr8_4:29708511-29708530 Msa1322560:intron 30.0%
GTTAAATTAGTCCTTGATCA+TGG + chr8_4:29708621-29708640 None:intergenic 30.0%
GGAAAAAAATTAGTTAGGAG+AGG + chr8_4:29708903-29708922 None:intergenic 30.0%
TTTCTTAAATAGACGATCAG+GGG + chr8_4:29708937-29708956 None:intergenic 30.0%
AATTCAAATCTCTTACCACT+TGG - chr8_4:29708955-29708974 Msa1322560:intron 30.0%
GACATGTACCAATGATATAT+TGG + chr8_4:29708982-29709001 None:intergenic 30.0%
AACTTATGCAAAAGAGTTTG+AGG - chr8_4:29709133-29709152 Msa1322560:intron 30.0%
! GTTCAAATACTCTTCTTTTG+AGG + chr8_4:29709171-29709190 None:intergenic 30.0%
!! AAGAGTATTTGAACTCTTTG+CGG - chr8_4:29709177-29709196 Msa1322560:intron 30.0%
!!! TCTAGCATTTTTTGAAACCA+TGG - chr8_4:29709309-29709328 Msa1322560:intron 30.0%
TTTCATACATGTGTGATTAG+AGG - chr8_4:29709385-29709404 Msa1322560:intron 30.0%
GACCATTGATAAAATGGTAA+TGG + chr8_4:29709581-29709600 None:intergenic 30.0%
AACTTGGACCATTGATAAAA+TGG + chr8_4:29709587-29709606 None:intergenic 30.0%
ACTTGACTATGGTTATAACT+TGG + chr8_4:29709603-29709622 None:intergenic 30.0%
AACAACAAACAACTTGACTA+TGG + chr8_4:29709614-29709633 None:intergenic 30.0%
TGGTAACAAATACCTCTATT+TGG - chr8_4:29709865-29709884 Msa1322560:intron 30.0%
GGTAACAAATACCTCTATTT+GGG - chr8_4:29709866-29709885 Msa1322560:intron 30.0%
! AATTGTACTTTTCCTGCTTA+TGG + chr8_4:29710038-29710057 None:intergenic 30.0%
TACCATTCTCTAATTTCTCT+AGG + chr8_4:29710112-29710131 None:intergenic 30.0%
GTAAAAGACAAAAATGCACT+TGG - chr8_4:29710347-29710366 Msa1322560:intron 30.0%
! TGTGTTAAAGCTGGAATTTT+AGG - chr8_4:29710459-29710478 Msa1322560:intron 30.0%
TATATTTCTTCTGCAACAAG+AGG + chr8_4:29710537-29710556 None:intergenic 30.0%
TATACTAGTGCATCAATTTC+TGG - chr8_4:29710553-29710572 Msa1322560:intron 30.0%
!! TAGATTTTAATCTTTGCAGC+TGG + chr8_4:29710613-29710632 None:intergenic 30.0%
!!! TCATGCAGTATTTGTTTTGT+TGG - chr8_4:29711061-29711080 Msa1322560:intron 30.0%
GTCAAATGTTAGATTGAACT+TGG + chr8_4:29711087-29711106 None:intergenic 30.0%
TGCTTATCTTATAGGGTTTA+AGG + chr8_4:29711117-29711136 None:intergenic 30.0%
TCCAACATGCTTATCTTATA+GGG + chr8_4:29711124-29711143 None:intergenic 30.0%
TATAAGATAAGCATGTTGGA+GGG - chr8_4:29711124-29711143 Msa1322560:intron 30.0%
! ATAATTTTTGACCGACATGT+TGG + chr8_4:29711191-29711210 None:intergenic 30.0%
ATATTTGAAGAATCAGTGTC+TGG + chr8_4:29711406-29711425 None:intergenic 30.0%
AATATACAAATGTGTCACCA+AGG - chr8_4:29711624-29711643 Msa1322560:intron 30.0%
ATCTTATGCATTTATGCACT+CGG + chr8_4:29711822-29711841 None:intergenic 30.0%
!! ATAAGATTTTGACCACATAC+AGG - chr8_4:29711835-29711854 Msa1322560:intron 30.0%
TATTGAAGAAACTCAAGAAG+AGG - chr8_4:29711985-29712004 Msa1322560:intron 30.0%
GCTTATATCAAAATTGGTCA+CGG + chr8_4:29712059-29712078 None:intergenic 30.0%
ACAATTTCTGTGTTTGATTG+TGG + chr8_4:29712136-29712155 None:intergenic 30.0%
GGTGAAAGTGATATCAATAT+CGG - chr8_4:29712496-29712515 Msa1322560:CDS 30.0%
! TATCAATATCGGTGAAGTTT+TGG - chr8_4:29712507-29712526 Msa1322560:CDS 30.0%
GGATTATTAAATCAAGATGC+CGG - chr8_4:29712550-29712569 Msa1322560:CDS 30.0%
GAAGATGATGAACTTGAAGA+TGG + chr8_4:29707321-29707340 None:intergenic 35.0%
! GAAGATTTGAAGCTCATCTA+TGG - chr8_4:29707642-29707661 Msa1322560:CDS 35.0%
ATCTATGGGATAAGACTTCT+TGG - chr8_4:29707657-29707676 Msa1322560:CDS 35.0%
GAACAAGATTCAGAACAAGA+AGG - chr8_4:29707679-29707698 Msa1322560:CDS 35.0%
TGATGAGTTTCTATGAAGCA+CGG - chr8_4:29707750-29707769 Msa1322560:CDS 35.0%
!!! GCTTCATAGATGGGTTTTTT+TGG - chr8_4:29707941-29707960 Msa1322560:CDS 35.0%
! TGCGGATGGTTTAGTTTATT+TGG - chr8_4:29708218-29708237 Msa1322560:intron 35.0%
! GCGGATGGTTTAGTTTATTT+GGG - chr8_4:29708219-29708238 Msa1322560:intron 35.0%
! CGATGCAACCTTAAATTTTC+CGG - chr8_4:29708449-29708468 Msa1322560:intron 35.0%
GATCATGGCTAAAATAACCT+TGG + chr8_4:29708606-29708625 None:intergenic 35.0%
!!! GGTTATTTTAGCCATGATCA+AGG - chr8_4:29708607-29708626 Msa1322560:intron 35.0%
! ATAGTTCAAAGAAGGGTATG+TGG + chr8_4:29708761-29708780 None:intergenic 35.0%
CAATGATATATTGGTCCAAG+TGG + chr8_4:29708973-29708992 None:intergenic 35.0%
CACTTGGACCAATATATCAT+TGG - chr8_4:29708971-29708990 Msa1322560:intron 35.0%
TGCAAAAGAGTTTGAGGAAA+TGG - chr8_4:29709139-29709158 Msa1322560:intron 35.0%
! TGACACTTTTGCAAGTATCT+GGG - chr8_4:29709640-29709659 Msa1322560:intron 35.0%
TTGAATAGGCATCACCATAA+TGG - chr8_4:29709812-29709831 Msa1322560:intron 35.0%
CGTGACATCTTTATTAAGCA+TGG + chr8_4:29709994-29710013 None:intergenic 35.0%
TGCTTAATAAAGATGTCACG+TGG - chr8_4:29709994-29710013 Msa1322560:intron 35.0%
ACATTTGACAATCCATAAGC+AGG - chr8_4:29710023-29710042 Msa1322560:intron 35.0%
AGGAAATTAGTACTTTGCAG+AGG + chr8_4:29710064-29710083 None:intergenic 35.0%
!! GTAATTATAGGTGTTGGTGT+CGG - chr8_4:29710201-29710220 Msa1322560:intron 35.0%
GATTAGACATGTTTCAGTGT+CGG + chr8_4:29710240-29710259 None:intergenic 35.0%
ACACTGAAACATGTCTAATC+AGG - chr8_4:29710240-29710259 Msa1322560:intron 35.0%
CACTGAAACATGTCTAATCA+GGG - chr8_4:29710241-29710260 Msa1322560:intron 35.0%
ACTGAAACATGTCTAATCAG+GGG - chr8_4:29710242-29710261 Msa1322560:intron 35.0%
AACGTGAATTGTGTTAAAGC+TGG - chr8_4:29710450-29710469 Msa1322560:intron 35.0%
CAATTTCCAGTATTGTTGAC+AGG + chr8_4:29710844-29710863 None:intergenic 35.0%
ACCCTATAAGATAAGCATGT+TGG - chr8_4:29711120-29711139 Msa1322560:intron 35.0%
CTCCAACATGCTTATCTTAT+AGG + chr8_4:29711125-29711144 None:intergenic 35.0%
CTATAAGATAAGCATGTTGG+AGG - chr8_4:29711123-29711142 Msa1322560:intron 35.0%
ATTCCAAATCCATCTAACCT+TGG + chr8_4:29711644-29711663 None:intergenic 35.0%
AGACATGAATCGAGATTAGA+TGG - chr8_4:29711708-29711727 Msa1322560:intron 35.0%
CAACTACATGGACAAATTGA+AGG - chr8_4:29712078-29712097 Msa1322560:intron 35.0%
TTGTTCTTCCAATGCTTCTT+CGG + chr8_4:29712176-29712195 None:intergenic 35.0%
!! TGTAGTTGATTTTCTTGTGG+AGG + chr8_4:29712214-29712233 None:intergenic 35.0%
!! GTTTTGACCAAGATTATCCA+TGG - chr8_4:29712314-29712333 Msa1322560:CDS 35.0%
TGAAGTTCCATGGATAATCT+TGG + chr8_4:29712324-29712343 None:intergenic 35.0%
CCATTATACATGAAGTTCCA+TGG + chr8_4:29712334-29712353 None:intergenic 35.0%
CCATGGAACTTCATGTATAA+TGG - chr8_4:29712331-29712350 Msa1322560:CDS 35.0%
TTGTTAGAGTTTCAAGACAC+AGG - chr8_4:29712355-29712374 Msa1322560:intron 35.0%
!!! AATATCGGTGAAGTTTTGGA+GGG - chr8_4:29712511-29712530 Msa1322560:CDS 35.0%
TGAGAATAGTAACAAGGAGA+AGG - chr8_4:29712588-29712607 Msa1322560:CDS 35.0%
GGAAGAAGAAGAAGAATCTA+AGG + chr8_4:29712623-29712642 None:intergenic 35.0%
GATGATGAACTTGAAGATGG+TGG + chr8_4:29707318-29707337 None:intergenic 40.0%
TTCTACTGCCACCATTTGTT+TGG + chr8_4:29707452-29707471 None:intergenic 40.0%
AGAAGAAGCTCCATTTACAG+AGG - chr8_4:29707468-29707487 Msa1322560:CDS 40.0%
CCTTGTAACTCCTCTGTAAA+TGG + chr8_4:29707481-29707500 None:intergenic 40.0%
CCATTTACAGAGGAGTTACA+AGG - chr8_4:29707478-29707497 Msa1322560:CDS 40.0%
CAAATTAGACATAGGTGGAC+TGG - chr8_4:29707620-29707639 Msa1322560:CDS 40.0%
CAGAACAAGAAGGGAAAACA+AGG - chr8_4:29707689-29707708 Msa1322560:CDS 40.0%
! TGTAATCATAGGTGTCGTGT+CGG - chr8_4:29707855-29707874 Msa1322560:CDS 40.0%
AGTGTCTCTGCTTCATAGAT+GGG - chr8_4:29707932-29707951 Msa1322560:CDS 40.0%
ATCTTGCAGCACTCAAGTAT+TGG - chr8_4:29708421-29708440 Msa1322560:intron 40.0%
TCTTGCAGCACTCAAGTATT+GGG - chr8_4:29708422-29708441 Msa1322560:intron 40.0%
CGATCAGGGGTTTAATTCTA+TGG + chr8_4:29708924-29708943 None:intergenic 40.0%
AGTATTTGAACTCTTTGCGG+CGG - chr8_4:29709180-29709199 Msa1322560:intron 40.0%
! CAAAGCAGTGGTTTTTCTAG+AGG - chr8_4:29709203-29709222 Msa1322560:intron 40.0%
AGAGGACTTTCTAAATACCG+TGG - chr8_4:29709221-29709240 Msa1322560:intron 40.0%
GAGGACTTTCTAAATACCGT+GGG - chr8_4:29709222-29709241 Msa1322560:intron 40.0%
AGGACTTTCTAAATACCGTG+GGG - chr8_4:29709223-29709242 Msa1322560:intron 40.0%
ACTGTGTCTCAAAATGGATC+CGG - chr8_4:29709336-29709355 Msa1322560:intron 40.0%
! GTGACACTTTTGCAAGTATC+TGG - chr8_4:29709639-29709658 Msa1322560:intron 40.0%
ATAGGCATCACCATAATGGT+CGG - chr8_4:29709816-29709835 Msa1322560:intron 40.0%
TACTGTATGTGCCCAAATAG+AGG + chr8_4:29709880-29709899 None:intergenic 40.0%
CTAATTTCTCTAGGCCTTTG+TGG + chr8_4:29710103-29710122 None:intergenic 40.0%
GGCCTAGAGAAATTAGAGAA+TGG - chr8_4:29710107-29710126 Msa1322560:CDS 40.0%
!! TCAATTTCTGGTCTCACCAT+AGG - chr8_4:29710565-29710584 Msa1322560:intron 40.0%
! GAAGTACCTGTCAACAATAC+TGG - chr8_4:29710835-29710854 Msa1322560:intron 40.0%
ACAAATACTGCATGACCACA+TGG + chr8_4:29711056-29711075 None:intergenic 40.0%
TGTAGATACTGCATGAGTCA+AGG + chr8_4:29711160-29711179 None:intergenic 40.0%
ATCACTATTCACGTGCTTAC+TGG + chr8_4:29711383-29711402 None:intergenic 40.0%
AATGTGTCACCAAGGTTAGA+TGG - chr8_4:29711632-29711651 Msa1322560:intron 40.0%
! TCACCAAGGTTAGATGGATT+TGG - chr8_4:29711638-29711657 Msa1322560:intron 40.0%
CATTCATGCAATCGACACAT+CGG - chr8_4:29711685-29711704 Msa1322560:intron 40.0%
CTACATGGACAAATTGAAGG+TGG - chr8_4:29712081-29712100 Msa1322560:intron 40.0%
TGTTGAAATTGTTGCTGCGA+AGG + chr8_4:29712244-29712263 None:intergenic 40.0%
ATTGCGCATTCATGACTAGT+TGG + chr8_4:29712274-29712293 None:intergenic 40.0%
!! CAATATCGGTGAAGTTTTGG+AGG - chr8_4:29712510-29712529 Msa1322560:CDS 40.0%
!! TTGGAGGGTATTGATCTTTG+TGG - chr8_4:29712526-29712545 Msa1322560:CDS 40.0%
AAATCAAGATGCCGGAGATA+TGG - chr8_4:29712558-29712577 Msa1322560:CDS 40.0%
TGCGGATGAGAATAGTAACA+AGG - chr8_4:29712582-29712601 Msa1322560:CDS 40.0%
TGTAGTGGTTGAAGATGATG+GGG + chr8_4:29712644-29712663 None:intergenic 40.0%
CTGTAGTGGTTGAAGATGAT+GGG + chr8_4:29712645-29712664 None:intergenic 40.0%
ACTGTAGTGGTTGAAGATGA+TGG + chr8_4:29712646-29712665 None:intergenic 40.0%
CACGTATACCAGATACGACA+CGG - chr8_4:29707780-29707799 Msa1322560:CDS 45.0%
ATTAGTGTCCGTGTCGTATC+TGG + chr8_4:29707791-29707810 None:intergenic 45.0%
TATGAAGCAGAGACACTCCT+TGG + chr8_4:29707929-29707948 None:intergenic 45.0%
GAGTGTCTCTGCTTCATAGA+TGG - chr8_4:29707931-29707950 Msa1322560:CDS 45.0%
GCAACGTTCACAATCACTTG+CGG - chr8_4:29708200-29708219 Msa1322560:intron 45.0%
! CTTGAGTGCTGCAAGATCAT+AGG + chr8_4:29708418-29708437 None:intergenic 45.0%
! CTTGCAGCACTCAAGTATTG+GGG - chr8_4:29708423-29708442 Msa1322560:intron 45.0%
!! TTGCAGCACTCAAGTATTGG+GGG - chr8_4:29708424-29708443 Msa1322560:intron 45.0%
! TTTGAGACACAGTTGCACCA+TGG + chr8_4:29709329-29709348 None:intergenic 45.0%
GGTGCAACTGTGTCTCAAAA+TGG - chr8_4:29709330-29709349 Msa1322560:intron 45.0%
! GTGGACTGTGGACACAAATT+AGG + chr8_4:29710084-29710103 None:intergenic 45.0%
TTTGTGTCCACAGTCCACAA+AGG - chr8_4:29710086-29710105 Msa1322560:CDS 45.0%
! GTTAGCATCCGTGTCTTGTT+CGG + chr8_4:29710147-29710166 None:intergenic 45.0%
TGGTCTCACCATAGGAACAT+AGG - chr8_4:29710573-29710592 Msa1322560:intron 45.0%
! TTTTGACCGACATGTTGGCA+GGG + chr8_4:29711186-29711205 None:intergenic 45.0%
! TTTTTGACCGACATGTTGGC+AGG + chr8_4:29711187-29711206 None:intergenic 45.0%
TGCTTACTGGATACTTGGGT+GGG + chr8_4:29711370-29711389 None:intergenic 45.0%
CACGTGCTTACTGGATACTT+GGG + chr8_4:29711374-29711393 None:intergenic 45.0%
TCACGTGCTTACTGGATACT+TGG + chr8_4:29711375-29711394 None:intergenic 45.0%
CATTTATGCACTCGGCACAT+TGG + chr8_4:29711814-29711833 None:intergenic 45.0%
CCATGAATTTGGCCTGTATG+TGG + chr8_4:29711850-29711869 None:intergenic 45.0%
CCACATACAGGCCAAATTCA+TGG - chr8_4:29711847-29711866 Msa1322560:intron 45.0%
ATGGCAGCAATAAAGCACAG+AGG - chr8_4:29712025-29712044 Msa1322560:intron 45.0%
CAATGCTTCTTCGGAATCAG+GGG + chr8_4:29712167-29712186 None:intergenic 45.0%
CCAATGCTTCTTCGGAATCA+GGG + chr8_4:29712168-29712187 None:intergenic 45.0%
TCCAATGCTTCTTCGGAATC+AGG + chr8_4:29712169-29712188 None:intergenic 45.0%
! TTGATTTTCTTGTGGAGGCG+AGG + chr8_4:29712209-29712228 None:intergenic 45.0%
GGTTCGACTATGAGCAAATG+CGG - chr8_4:29712376-29712395 Msa1322560:intron 45.0%
TTCAACACGGAAGAACCTTG+TGG - chr8_4:29712466-29712485 Msa1322560:intron 45.0%
!! GAGGGTATTGATCTTTGTGG+AGG - chr8_4:29712529-29712548 Msa1322560:CDS 45.0%
!!! TTTCATTTTAATTATTTTAA+TGG - chr8_4:29708117-29708136 Msa1322560:intron 5.0%
!!! TATAATTTTTTTAGATTTTA+AGG + chr8_4:29710985-29711004 None:intergenic 5.0%
CGGACACTAATACGCCGATA+CGG - chr8_4:29707800-29707819 Msa1322560:CDS 50.0%
GATTAAGCGTGTCCCAGTGT+CGG + chr8_4:29707907-29707926 None:intergenic 50.0%
ACTGGGACACGCTTAATCCA+AGG - chr8_4:29707909-29707928 Msa1322560:CDS 50.0%
CGTTCACAATCACTTGCGGA+TGG - chr8_4:29708204-29708223 Msa1322560:intron 50.0%
GTAGTCAGCTGCAGACAATC+CGG + chr8_4:29709358-29709377 None:intergenic 50.0%
GCATCACCATAATGGTCGGT+GGG - chr8_4:29709820-29709839 Msa1322560:intron 50.0%
CACAGACACCGAACAAGACA+CGG - chr8_4:29710136-29710155 Msa1322560:CDS 50.0%
CAACCAGCACAACTCACACA+TGG + chr8_4:29710487-29710506 None:intergenic 50.0%
ACAATCCCCTGCCAACATGT+CGG - chr8_4:29711177-29711196 Msa1322560:intron 50.0%
TTTGACCGACATGTTGGCAG+GGG + chr8_4:29711185-29711204 None:intergenic 50.0%
CTTACTGGATACTTGGGTGG+GGG + chr8_4:29711368-29711387 None:intergenic 50.0%
GCTTACTGGATACTTGGGTG+GGG + chr8_4:29711369-29711388 None:intergenic 50.0%
GTGCTTACTGGATACTTGGG+TGG + chr8_4:29711371-29711390 None:intergenic 50.0%
TTATGCACTCGGCACATTGG+TGG + chr8_4:29711811-29711830 None:intergenic 50.0%
AACTCAAGAAGAGGCAGCAG+TGG - chr8_4:29711994-29712013 Msa1322560:intron 50.0%
GGCAGCAGTGGCTTATGATA+TGG - chr8_4:29712006-29712025 Msa1322560:intron 50.0%
! CCCTGATTCCGAAGAAGCAT+TGG - chr8_4:29712165-29712184 Msa1322560:intron 50.0%
! GCGCATTCATGACTAGTTGG+AGG + chr8_4:29712271-29712290 None:intergenic 50.0%
AACACGGAAGAACCTTGTGG+TGG - chr8_4:29712469-29712488 Msa1322560:intron 50.0%
AGATGCCGGAGATATGGTTG+CGG - chr8_4:29712564-29712583 Msa1322560:CDS 50.0%
CTCATCCGCAACCATATCTC+CGG + chr8_4:29712572-29712591 None:intergenic 50.0%
! CATAGGTGTCGTGTCGGTGT+TGG - chr8_4:29707861-29707880 Msa1322560:CDS 55.0%
ACCTACGCGAATCCGACACT+GGG - chr8_4:29707892-29707911 Msa1322560:CDS 55.0%
CTAAATACCGTGGGGTTGCC+AGG - chr8_4:29709231-29709250 Msa1322560:intron 55.0%
GATCTAACCTGGCAACCCCA+CGG + chr8_4:29709241-29709260 None:intergenic 55.0%
GGCATCACCATAATGGTCGG+TGG - chr8_4:29709819-29709838 Msa1322560:intron 55.0%
GAGCTTCCCACCGACCATTA+TGG + chr8_4:29709829-29709848 None:intergenic 55.0%
GCTCGCATTGGAAGAGTTCG+TGG - chr8_4:29709845-29709864 Msa1322560:intron 55.0%
! CTCTAGGCCTTTGTGGACTG+TGG + chr8_4:29710096-29710115 None:intergenic 55.0%
GCTCCATGTGTGAGTTGTGC+TGG - chr8_4:29710481-29710500 Msa1322560:intron 55.0%
GAAGAACCTTGTGGTGGTCG+TGG - chr8_4:29712475-29712494 Msa1322560:intron 55.0%
CTTTCACCACGACCACCACA+AGG + chr8_4:29712484-29712503 None:intergenic 55.0%
CACCTACGCGAATCCGACAC+TGG - chr8_4:29707891-29707910 Msa1322560:CDS 60.0%
! TCCCAGTGTCGGATTCGCGT+AGG + chr8_4:29707896-29707915 None:intergenic 60.0%
TCTTTGCGGCGGCAAAGCAG+TGG - chr8_4:29709191-29709210 Msa1322560:intron 60.0%
GGTCGGTGGGAAGCTCGCAT+TGG - chr8_4:29709833-29709852 Msa1322560:intron 65.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 29707303 29712675 29707303 ID=Msa1322560;Name=Msa1322560
chr8_4 mRNA 29707303 29712675 29707303 ID=Msa1322560-mRNA-1;Parent=Msa1322560;Name=Msa1322560-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0.2|0|1|1|1|6|0|417
chr8_4 exon 29712479 29712675 29712479 ID=Msa1322560-mRNA-1:exon:9925;Parent=Msa1322560-mRNA-1
chr8_4 exon 29712268 29712350 29712268 ID=Msa1322560-mRNA-1:exon:9924;Parent=Msa1322560-mRNA-1
chr8_4 exon 29711508 29711596 29711508 ID=Msa1322560-mRNA-1:exon:9923;Parent=Msa1322560-mRNA-1
chr8_4 exon 29710726 29710850 29710726 ID=Msa1322560-mRNA-1:exon:9922;Parent=Msa1322560-mRNA-1
chr8_4 exon 29710082 29710158 29710082 ID=Msa1322560-mRNA-1:exon:9921;Parent=Msa1322560-mRNA-1
chr8_4 exon 29707303 29707985 29707303 ID=Msa1322560-mRNA-1:exon:9920;Parent=Msa1322560-mRNA-1
chr8_4 CDS 29712479 29712675 29712479 ID=Msa1322560-mRNA-1:cds;Parent=Msa1322560-mRNA-1
chr8_4 CDS 29712268 29712350 29712268 ID=Msa1322560-mRNA-1:cds;Parent=Msa1322560-mRNA-1
chr8_4 CDS 29711508 29711596 29711508 ID=Msa1322560-mRNA-1:cds;Parent=Msa1322560-mRNA-1
chr8_4 CDS 29710726 29710850 29710726 ID=Msa1322560-mRNA-1:cds;Parent=Msa1322560-mRNA-1
chr8_4 CDS 29710082 29710158 29710082 ID=Msa1322560-mRNA-1:cds;Parent=Msa1322560-mRNA-1
chr8_4 CDS 29707303 29707985 29707303 ID=Msa1322560-mRNA-1:cds;Parent=Msa1322560-mRNA-1
Gene Sequence

>Msa1322560

ATGAAGAGGTATCCACCATCTTCAAGTTCATCATCTTCATCTTCTATTGGATTCGAGAATCCAATTCAATCAGTGAAAAAAAAGGGTGCTAAGAATCCAAAAAAGAATCTCAATGTCAAATCACAGAATTTAAAGCAGAAGAAAAACCAAACAAATGGTGGCAGTAGAAGAAGCTCCATTTACAGAGGAGTTACAAGACATAGGTGGACTGGAAGATTTGAAGCTCATCTATGGGATAAGACTTCTTGGAACAAGATTCAGAACAAGAAGGGAAAACAAGGTGCTTATGATACTGAAGAAGCAGCAGCTCGTACCTATGATCTTGCAGCACTCAAGTATTGGGGGAACGATGCAACCTTAAATTTTCCGATAGAAACTTATGCAAAAGAGTTTGAGGAAATGGACAAAGCCTCAAAAGAAGAGTATTTGAACTCTTTGCGGCGGCAAAGCAGTGGTTTTTCTAGAGGACTTTCTAAATACCGTGGGGTTGCCAGGCATCACCATAATGGTCGGTGGGAAGCTCGCATTGGAAGAGTTCGTGGTAACAAATACCTCTATTTGGGCACATACAAAACTCAAGAAGAGGCAGCAGTGGCTTATGATATGGCAGCAATAAAGCACAGAGGAATCAATGCCGTGACCAATTTTGATATAAGCAACTACATGGACAAATTGAAGGTGGAGAAAAATGATGAAACTGAACAAACAAAACCACAATCAAACACAGAAATTGTTGCTAATTCCCCTGATTCCGAAGAAGCATTGGAAGAACAAACAACAACTACCTCGCCTCCACAAGAAAATCAACTACAAATAGAACCTTCGCAGCAACAATTTCAACATGTTCCTCCAACTAGTCATGAATGCGCAATAGTTAATATTATGGATCATTGTTTTGACCAAGATTATCCATGGAACTTCATGTATAATGGATTGTTAGAGTTTCAAGACACAGGTTCGACTATGAGCAAATGCGGTGATGATGATTTAATGAATATATTTGATGGCTCAAGCTTTGATGATAACATTGAATTTGAACTTATGTTCAACACGGAAGAACCTTGTGGTGGTCGTGGTGAAAGTGATATCAATATCGGTGAAGTTTTGGAGGGTATTGATCTTTGTGGAGGATTATTAAATCAAGATGCCGGAGATATGGTTGCGGATGAGAATAGTAACAAGGAGAAGGATTTATTATCCTTAGATTCTTCTTCTTCTTCCCCATCATCTTCAACCACTACAGTTTCTTTGTAA
Protein sequence

>Msa1322560

MKRYPPSSSSSSSSSIGFENPIQSVKKKGAKNPKKNLNVKSQNLKQKKNQTNGGSRRSSIYRGVTRHRWTGRFEAHLWDKTSWNKIQNKKGKQGAYDTEEAAARTYDLAALKYWGNDATLNFPIETYAKEFEEMDKASKEEYLNSLRRQSSGFSRGLSKYRGVARHHHNGRWEARIGRVRGNKYLYLGTYKTQEEAAVAYDMAAIKHRGINAVTNFDISNYMDKLKVEKNDETEQTKPQSNTEIVANSPDSEEALEEQTTTTSPPQENQLQIEPSQQQFQHVPPTSHECAIVNIMDHCFDQDYPWNFMYNGLLEFQDTGSTMSKCGDDDLMNIFDGSSFDDNIEFELMFNTEEPCGGRGESDINIGEVLEGIDLCGGLLNQDAGDMVADENSNKEKDLLSLDSSSSSPSSSTTTVSL*