AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1325870

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1325870 MtrunA17_Chr8g0360521 97.842 417 9 0 1 417 1 417 0.0 856
Msa1325870 MtrunA17_Chr3g0113671 50.986 355 165 4 60 409 99 449 4.87e-131 384
Msa1325870 MtrunA17_Chr5g0437601 50.143 349 169 3 66 410 78 425 8.50e-130 380
Msa1325870 MtrunA17_Chr4g0005491 46.883 401 192 7 18 410 21 408 1.29e-127 374
Msa1325870 MtrunA17_Chr4g0006991 48.442 353 174 3 64 409 76 427 6.25e-127 373
Msa1325870 MtrunA17_Chr4g0005481 49.708 342 170 2 69 409 106 446 8.73e-124 366
Msa1325870 MtrunA17_Chr3g0114101 49.419 344 169 3 71 410 89 431 2.44e-123 364
Msa1325870 MtrunA17_Chr7g0242701 49.008 353 172 3 64 409 76 427 2.63e-123 364
Msa1325870 MtrunA17_Chr7g0243301 43.902 410 208 8 12 410 12 410 4.18e-120 355
Msa1325870 MtrunA17_Chr5g0437291 45.429 350 183 4 69 410 163 512 3.30e-115 346
Msa1325870 MtrunA17_Chr1g0171171 42.566 343 173 9 71 409 53 375 5.15e-85 264
Msa1325870 MtrunA17_Chr1g0210771 39.766 342 185 8 71 409 59 382 1.49e-82 258
Msa1325870 MtrunA17_Chr3g0105301 38.329 347 195 6 71 410 43 377 4.57e-82 256
Msa1325870 MtrunA17_Chr3g0097891 37.249 349 186 7 68 409 28 350 1.35e-78 247
Msa1325870 MtrunA17_Chr5g0430371 35.165 364 209 8 62 410 49 400 1.07e-77 246
Msa1325870 MtrunA17_Chr7g0258851 35.876 354 200 8 71 410 248 588 6.04e-75 244
Msa1325870 MtrunA17_Chr1g0175671 35.593 354 201 8 71 410 170 510 1.49e-74 241
Msa1325870 MtrunA17_Chr4g0068111 34.247 365 203 7 71 416 114 460 2.80e-74 239
Msa1325870 MtrunA17_Chr2g0314801 37.830 341 184 8 71 406 33 350 7.83e-74 234
Msa1325870 MtrunA17_Chr4g0041011 35.714 350 189 10 67 409 43 363 2.30e-73 234
Msa1325870 MtrunA17_Chr7g0259711 36.364 363 194 12 69 411 89 434 4.22e-73 236
Msa1325870 MtrunA17_Chr5g0413271 35.180 361 205 8 62 411 136 478 4.90e-73 236
Msa1325870 MtrunA17_Chr2g0287901 39.452 365 187 14 65 411 91 439 4.90e-73 236
Msa1325870 MtrunA17_Chr3g0085081 37.464 347 184 8 69 409 29 348 5.17e-73 232
Msa1325870 MtrunA17_Chr4g0071391 35.328 351 202 11 71 409 109 446 4.12e-72 233
Msa1325870 MtrunA17_Chr3g0091031 37.143 350 187 8 64 407 24 346 6.10e-72 229
Msa1325870 MtrunA17_Chr7g0269991 34.454 357 190 9 71 409 137 467 2.18e-71 232
Msa1325870 MtrunA17_Chr2g0283581 36.176 387 210 10 27 409 5 358 6.37e-71 227
Msa1325870 MtrunA17_Chr2g0325481 35.897 351 195 10 64 410 43 367 2.31e-70 226
Msa1325870 MtrunA17_Chr4g0045941 34.971 346 198 8 68 410 30 351 6.35e-69 222
Msa1325870 MtrunA17_Chr5g0413851 34.483 406 213 10 14 412 3 362 4.57e-68 220
Msa1325870 MtrunA17_Chr1g0213281 32.044 362 226 9 60 410 164 516 1.95e-67 223
Msa1325870 MtrunA17_Chr3g0085071 35.057 348 197 7 64 407 39 361 3.40e-67 218
Msa1325870 MtrunA17_Chr4g0045951 35.028 354 201 9 61 409 33 362 2.77e-66 215
Msa1325870 MtrunA17_Chr2g0314791 32.773 357 196 10 67 412 25 348 9.84e-65 211
Msa1325870 MtrunA17_Chr8g0368461 33.243 370 205 11 69 411 176 530 4.34e-63 212
Msa1325870 MtrunA17_Chr3g0126021 32.520 369 209 9 59 411 117 461 1.19e-61 206
Msa1325870 MtrunA17_Chr8g0384151 32.231 363 208 10 65 414 84 421 4.77e-59 198
Msa1325870 MtrunA17_Chr1g0209921 35.217 230 139 6 71 297 44 266 1.23e-49 169
Msa1325870 MtrunA17_Chr6g0476041 29.058 382 214 13 67 415 163 520 5.29e-46 166
Msa1325870 MtrunA17_Chr1g0178081 29.722 360 179 9 69 417 53 349 1.07e-45 161
Msa1325870 MtrunA17_Chr1g0188191 28.760 379 223 15 67 417 230 589 1.98e-44 162
Msa1325870 MtrunA17_Chr8g0347321 30.000 360 216 13 71 409 95 439 4.31e-42 154
Msa1325870 MtrunA17_Chr6g0456691 28.169 426 244 15 14 409 26 419 4.19e-41 150
Msa1325870 MtrunA17_Chr7g0226991 28.689 366 232 13 64 411 50 404 6.98e-41 149
Msa1325870 MtrunA17_Chr8g0391481 28.723 376 222 11 68 417 24 379 1.64e-40 148
Msa1325870 MtrunA17_Chr6g0456681 27.809 356 225 11 69 405 62 404 1.58e-39 146
Msa1325870 MtrunA17_Chr8g0384421 29.201 363 214 12 69 409 131 472 7.54e-38 142
Msa1325870 MtrunA17_Chr5g0414091 27.045 440 252 18 2 405 21 427 8.01e-38 142
Msa1325870 MtrunA17_Chr5g0414051 28.267 375 214 14 68 411 72 422 8.23e-38 142
Msa1325870 MtrunA17_Chr3g0140371 28.065 367 222 12 68 411 15 362 1.78e-37 139
Msa1325870 MtrunA17_Chr2g0283851 29.363 361 208 16 72 405 56 396 1.85e-37 140
Msa1325870 MtrunA17_Chr8g0387921 29.396 364 206 16 71 405 74 415 3.39e-36 137
Msa1325870 MtrunA17_Chr4g0049421 28.261 368 220 16 71 413 48 396 3.62e-36 137
Msa1325870 MtrunA17_Chr5g0414061 28.686 373 208 12 71 411 94 440 6.28e-35 134
Msa1325870 MtrunA17_Chr5g0414041 27.151 372 217 11 71 411 87 435 1.59e-33 130
Msa1325870 MtrunA17_Chr4g0070341 28.093 388 186 16 69 409 130 471 1.06e-32 128
Msa1325870 MtrunA17_Chr6g0455901 25.737 373 220 15 69 409 69 416 1.39e-28 116
Msa1325870 MtrunA17_Chr6g0451321 23.978 367 238 13 65 409 110 457 8.23e-28 114
Msa1325870 MtrunA17_Chr7g0221271 33.333 165 106 3 1 163 8 170 1.58e-26 105
Msa1325870 MtrunA17_Chr7g0221291 32.727 165 107 3 1 163 8 170 2.68e-25 101
Msa1325870 MtrunA17_Chr2g0287911 56.140 57 17 2 71 127 61 109 4.67e-17 76.6
Msa1325870 MtrunA17_Chr2g0287931 31.746 126 77 3 132 249 2 126 4.49e-15 71.6
Msa1325870 MtrunA17_Chr3g0085101 37.736 106 58 2 265 367 6 106 4.82e-15 71.2
Msa1325870 MtrunA17_Chr1g0209931 34.286 105 52 2 308 412 8 95 3.88e-12 62.4
Msa1325870 MtrunA17_Chr5g0429191 59.184 49 14 2 355 402 2 45 7.89e-12 59.7
Msa1325870 MtrunA17_Chr7g0221281 22.222 243 149 7 185 405 8 232 4.08e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1325870 AT1G73140.1 68.990 416 124 2 2 416 1 412 0.0 614
Msa1325870 AT5G01360.2 49.036 363 178 2 54 409 16 378 2.84e-133 388
Msa1325870 AT5G01360.1 49.036 363 178 2 54 409 72 434 1.27e-132 388
Msa1325870 AT2G40150.1 49.861 361 166 3 60 409 64 420 4.28e-132 387
Msa1325870 AT3G55990.1 50.432 347 167 2 69 410 138 484 3.45e-131 386
Msa1325870 AT2G40320.1 48.711 349 174 2 66 410 76 423 1.85e-123 364
Msa1325870 AT5G01620.2 46.686 347 176 4 68 409 107 449 4.97e-120 357
Msa1325870 AT5G01620.1 46.686 347 176 4 68 409 107 449 4.97e-120 357
Msa1325870 AT5G01620.3 46.686 347 176 4 68 409 115 457 7.44e-120 357
Msa1325870 AT3G11030.1 48.286 350 175 4 66 410 101 449 8.35e-120 356
Msa1325870 AT2G38320.1 44.340 424 202 8 1 413 8 408 2.53e-118 351
Msa1325870 AT2G40160.1 41.274 424 232 5 4 410 1 424 3.87e-117 348
Msa1325870 AT2G40160.2 41.274 424 232 5 4 410 1 424 5.30e-117 348
Msa1325870 AT2G38320.2 46.483 327 164 5 96 413 1 325 8.74e-100 300
Msa1325870 AT3G54260.1 39.420 345 188 7 71 412 51 377 4.32e-82 257
Msa1325870 AT2G30900.1 38.040 347 185 10 71 410 43 366 5.76e-81 254
Msa1325870 AT3G62390.1 37.778 360 192 11 64 410 132 472 1.69e-79 253
Msa1325870 AT2G40160.3 40.193 311 170 4 4 298 1 311 2.78e-79 248
Msa1325870 AT5G20590.1 36.158 354 200 9 70 410 140 480 2.07e-78 251
Msa1325870 AT5G58600.1 37.176 347 200 6 71 410 66 401 5.97e-78 247
Msa1325870 AT3G12060.1 37.921 356 194 9 69 410 194 536 4.46e-77 249
Msa1325870 AT1G78710.1 35.465 344 194 9 71 410 38 357 4.54e-76 241
Msa1325870 AT1G29050.1 35.262 363 205 8 50 409 43 378 8.38e-75 238
Msa1325870 AT5G06700.1 37.394 353 198 10 69 409 253 594 4.92e-74 243
Msa1325870 AT2G31110.2 38.304 342 184 8 71 409 45 362 7.25e-74 235
Msa1325870 AT2G34070.1 34.278 353 204 7 61 409 55 383 1.24e-73 235
Msa1325870 AT5G49340.1 36.915 363 186 10 71 410 100 442 2.13e-73 237
Msa1325870 AT3G06080.2 36.695 357 200 8 70 411 102 447 3.62e-72 234
Msa1325870 AT1G60790.1 34.197 386 215 12 52 411 162 534 2.00e-69 229
Msa1325870 AT2G30010.1 33.600 375 209 10 56 410 43 397 9.50e-69 223
Msa1325870 AT2G30010.2 33.600 375 209 10 56 410 86 440 1.68e-68 224
Msa1325870 AT5G19160.1 34.239 368 208 10 70 417 98 451 1.74e-68 224
Msa1325870 AT2G42570.1 36.919 344 188 8 71 410 47 365 1.91e-68 221
Msa1325870 AT3G14850.2 34.582 347 201 8 69 411 32 356 2.41e-68 221
Msa1325870 AT5G06230.2 34.973 366 208 8 67 414 17 370 2.35e-58 195
Msa1325870 AT1G48880.1 31.933 357 197 13 71 411 115 441 3.11e-58 197
Msa1325870 AT5G06230.1 34.973 366 208 8 67 414 58 411 6.87e-58 195
Msa1325870 AT1G78710.2 30.294 340 164 8 71 410 31 297 2.99e-56 187
Msa1325870 AT3G11570.1 34.384 349 186 12 88 414 98 425 1.47e-53 184
Msa1325870 AT3G62390.2 37.247 247 141 7 64 300 132 374 8.78e-52 179
Msa1325870 AT2G30900.2 38.496 226 124 7 71 290 43 259 1.70e-51 174
Msa1325870 AT5G20590.2 35.417 240 142 5 70 298 140 377 1.46e-50 175
Msa1325870 AT2G31110.3 38.222 225 128 4 71 292 45 261 4.76e-50 170
Msa1325870 AT5G19160.2 35.146 239 144 4 70 298 98 335 6.37e-49 170
Msa1325870 AT5G58600.2 36.364 231 136 4 71 297 66 289 3.00e-48 166
Msa1325870 AT3G06080.1 35.983 239 142 4 70 298 102 339 3.37e-48 168
Msa1325870 AT2G34070.2 32.353 272 157 6 142 409 1 249 8.60e-46 159
Msa1325870 AT5G51640.1 28.460 383 224 13 64 415 131 494 1.98e-43 159
Msa1325870 AT4G25360.1 28.429 401 222 15 58 417 156 532 2.07e-43 159
Msa1325870 AT4G25360.2 28.429 401 222 15 58 417 156 532 2.07e-43 159
Msa1325870 AT5G64020.1 30.790 367 211 13 71 409 57 408 5.65e-43 155
Msa1325870 AT5G64470.3 29.201 363 220 15 71 414 55 399 2.64e-42 154
Msa1325870 AT1G70230.1 27.920 351 223 11 71 409 79 411 1.84e-41 152
Msa1325870 AT3G14850.1 31.752 274 162 7 142 411 1 253 2.25e-40 144
Msa1325870 AT3G02440.2 28.249 354 219 11 71 405 135 472 9.99e-40 148
Msa1325870 AT3G02440.1 28.249 354 219 11 71 405 127 464 1.25e-39 148
Msa1325870 AT5G20680.6 29.058 382 190 14 69 409 116 457 3.64e-39 146
Msa1325870 AT5G15890.1 28.042 378 229 10 50 405 162 518 8.73e-39 146
Msa1325870 AT2G37720.1 30.319 376 189 16 71 409 143 482 8.86e-39 145
Msa1325870 AT5G20680.4 29.058 382 190 14 69 409 210 551 9.54e-39 147
Msa1325870 AT5G20680.1 29.058 382 190 14 69 409 210 551 9.54e-39 147
Msa1325870 AT5G20680.3 29.058 382 190 14 69 409 210 551 9.54e-39 147
Msa1325870 AT5G20680.5 29.058 382 190 14 69 409 210 551 9.54e-39 147
Msa1325870 AT5G20680.2 29.058 382 190 14 69 409 192 533 1.06e-38 146
Msa1325870 AT5G64470.2 28.726 369 220 17 71 414 55 405 2.46e-38 143
Msa1325870 AT2G14530.1 27.989 368 213 12 71 409 62 406 6.21e-38 142
Msa1325870 AT4G23790.1 27.093 454 241 21 6 405 6 423 8.56e-38 142
Msa1325870 AT5G06230.3 34.274 248 144 5 67 297 58 303 4.81e-37 137
Msa1325870 AT1G01430.1 25.750 400 261 11 34 410 62 448 1.72e-36 139
Msa1325870 AT4G11090.1 26.075 372 227 13 62 405 70 421 7.99e-36 137
Msa1325870 AT5G15900.1 27.978 361 224 11 69 409 65 409 5.97e-35 134
Msa1325870 AT5G15900.2 27.978 361 224 11 69 409 84 428 6.71e-35 134
Msa1325870 AT4G01080.1 26.776 366 223 13 63 405 83 426 1.14e-34 134
Msa1325870 AT3G28150.1 28.767 365 220 15 66 409 65 410 2.57e-34 132
Msa1325870 AT2G31110.1 35.217 230 123 7 183 409 8 214 2.25e-33 125
Msa1325870 AT5G64470.1 26.908 249 161 10 71 303 55 298 1.48e-21 95.1
Msa1325870 AT5G64470.4 26.506 249 162 10 71 303 55 298 1.66e-21 94.7

Find 135 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATGCAATCAGCAAAAGATTT+TGG 0.125911 8_4:-38662184 None:intergenic
AGAAGTGAATACAATATAAT+TGG 0.171993 8_4:-38659968 None:intergenic
AGGATTTCATTCCATGTATC+TGG 0.201338 8_4:-38662229 None:intergenic
AACAAAAGAATGATGTTTAT+TGG 0.212670 8_4:+38660479 Msa1325870:CDS
CTGATTCTTTCTACACAAAT+TGG 0.216029 8_4:+38660242 Msa1325870:CDS
CAATACAAGGTTCGTCATAT+TGG 0.230048 8_4:+38661987 Msa1325870:CDS
TGGAGGGATTTCTTTCCTTC+AGG 0.275411 8_4:-38660560 None:intergenic
TCTTCATAGGTGGAATTCTT+TGG 0.275642 8_4:-38660580 None:intergenic
CTGTCGTGACGTTATATTCT+TGG 0.282711 8_4:-38661464 None:intergenic
AATACAAGGTTCGTCATATT+GGG 0.282741 8_4:+38661988 Msa1325870:CDS
CCTTATACGATCTAAGCTTT+TGG 0.289384 8_4:+38663252 Msa1325870:intron
TTGGCAAGGAGTGGACATTT+TGG 0.310618 8_4:+38661063 Msa1325870:CDS
GCAATGTATTTGAAGGGAAA+TGG 0.312090 8_4:+38660131 Msa1325870:CDS
TGCATTCACTGGTGTTTACC+TGG 0.316704 8_4:+38662202 Msa1325870:CDS
GCTTGCTCTTCAAGCTATCT+AGG 0.322912 8_4:-38660015 None:intergenic
TAGATCTCTGTTCTTTAGTC+AGG 0.343380 8_4:-38662159 None:intergenic
ATTACCAGTTGTTGTGTTGC+CGG 0.344537 8_4:+38660087 Msa1325870:CDS
ATACTACTGGGCTCCATTCA+TGG 0.353905 8_4:+38660955 Msa1325870:CDS
CGTTGAGTTCACATATGTTC+TGG 0.354464 8_4:+38662684 Msa1325870:three_prime_UTR
ATATAATTGGGAAAATTGAT+TGG 0.370417 8_4:-38659955 None:intergenic
CAATGTATTTGAAGGGAAAT+GGG 0.374415 8_4:+38660132 Msa1325870:CDS
TGCCGAAAATTATATTGTTT+AGG 0.375449 8_4:-38662530 None:intergenic
CAGCTCTACGGCATGTCATC+TGG 0.379386 8_4:+38660052 Msa1325870:CDS
TTATATTCTTGGACTTCATC+TGG 0.380050 8_4:-38661453 None:intergenic
GTGGTATATTTGTGAATGAT+AGG 0.381990 8_4:-38663301 Msa1325880:CDS
ATGCATCGATTGAATACTAC+TGG 0.392477 8_4:+38660942 Msa1325870:CDS
GATGCTCACACATCAGTTTA+CGG 0.394570 8_4:+38662118 Msa1325870:CDS
ATAATTGGGTGATGTTCAAT+AGG 0.397627 8_4:-38662081 None:intergenic
CAATATGACGAACCTTGTAT+TGG 0.400765 8_4:-38661986 None:intergenic
AGAAGAGAGTTGCCCTTACT+TGG 0.406575 8_4:+38660186 Msa1325870:CDS
AGTATGAACAACTAGCAATA+TGG 0.407962 8_4:-38662768 Msa1325880:CDS
GTGGTCTGCTTGACCAAGTA+AGG 0.408960 8_4:-38660199 None:intergenic
ATTTGAGTCTATGATCTGTT+TGG 0.410845 8_4:+38660523 Msa1325870:CDS
TTTAGGTTTCCATGAAGAAC+AGG 0.415460 8_4:-38662513 None:intergenic
TCAACTCTAAATATCTTCAT+AGG 0.419733 8_4:-38660593 None:intergenic
ACGCTCTATTAAATTAAAGT+TGG 0.428012 8_4:-38663363 Msa1325880:CDS
AGGCTAAAATCATAAACTAT+AGG 0.429225 8_4:-38662493 None:intergenic
TCCTCCGGCAACACAACAAC+TGG 0.434980 8_4:-38660091 None:intergenic
CAAATCATACGGTACATAAA+CGG 0.437106 8_4:+38661002 Msa1325870:CDS
CAATTTGTGTAGAAAGAATC+AGG 0.437639 8_4:-38660241 None:intergenic
TCTTAAACAGATATGCATAT+AGG 0.438576 8_4:-38662249 None:intergenic
GAAGTGAATACAATATAATT+GGG 0.442470 8_4:-38659967 None:intergenic
TCATATCAATGCTGTCTCTC+AGG 0.445124 8_4:+38659912 Msa1325870:exon
GAAATTGATTCAACCATGAA+TGG 0.447404 8_4:-38660968 None:intergenic
GAACAACTAGCAATATGGTT+TGG 0.449984 8_4:-38662763 Msa1325880:CDS
TTGGGAAAATTGATTGGATC+CGG 0.452959 8_4:-38659949 None:intergenic
AATATGACGAACCTTGTATT+GGG 0.455104 8_4:-38661985 None:intergenic
ACAAGCATCATTCAGATTGA+TGG 0.455770 8_4:+38662319 Msa1325870:three_prime_UTR
CCCTCCTCAATGCGATCCTC+CGG 0.457796 8_4:-38660106 None:intergenic
CATGGGACAGAAAAGAATCC+AGG 0.460825 8_4:-38662824 Msa1325880:intron
TATTTGAAGGGAAATGGGTA+TGG 0.465084 8_4:+38660137 Msa1325870:CDS
TTCTAATCTTTGCAGTTACA+AGG 0.466052 8_4:+38659987 Msa1325870:CDS
CAGACCACTTGCATGAAGAA+TGG 0.466368 8_4:+38660214 Msa1325870:CDS
GAGGGTTGCAATGTATTTGA+AGG 0.469336 8_4:+38660124 Msa1325870:CDS
GCATTCACTGGTGTTTACCT+GGG 0.470418 8_4:+38662203 Msa1325870:CDS
CTCACGTAGCATTGATGAAA+GGG 0.471007 8_4:-38661117 None:intergenic
CTCTATTAAATTAAAGTTGG+AGG 0.475359 8_4:-38663360 Msa1325880:CDS
AGACCACTTGCATGAAGAAT+GGG 0.475855 8_4:+38660215 Msa1325870:CDS
AGGAGCTGGGAATGGAAGCC+AGG 0.483811 8_4:+38661932 Msa1325870:intron
ATCAGTTTACGGCGAGCGAA+AGG 0.487243 8_4:+38662129 Msa1325870:CDS
GGAGATGCTGATATCGAGCC+AGG 0.490893 8_4:-38662742 Msa1325880:CDS
ATCCAAAAGGCAAAAGGTGT+TGG 0.491457 8_4:-38662394 None:intergenic
CATAGGTGGAATTCTTTGGA+GGG 0.491727 8_4:-38660576 None:intergenic
CAACTCTCTTCTTCATAAAG+AGG 0.502052 8_4:-38660175 None:intergenic
GAATTAAATCGTCCGAGAGT+TGG 0.503700 8_4:+38662706 Msa1325870:three_prime_UTR
ATTCTTTCTACACAAATTGG+AGG 0.504866 8_4:+38660245 Msa1325870:CDS
GTATGTCTCCAACACATTTG+TGG 0.505067 8_4:+38661568 Msa1325870:CDS
CATTGATATGAGATGGTTGA+AGG 0.506584 8_4:-38659900 None:intergenic
TGTTCGAGAGTTATGTTTGG+TGG 0.513573 8_4:+38661086 Msa1325870:CDS
GCCGGAGGATCGCATTGAGG+AGG 0.515226 8_4:+38660105 Msa1325870:CDS
TCTTCTCCAGGAGCTGGGAA+TGG 0.516727 8_4:+38661924 Msa1325870:intron
TATACAATCCAAAAGGCAAA+AGG 0.521640 8_4:-38662400 None:intergenic
GATACAAAGCGTGAAGATAG+TGG 0.522290 8_4:-38663320 Msa1325880:CDS
TCATAGGTGGAATTCTTTGG+AGG 0.523486 8_4:-38660577 None:intergenic
GGATTTCATTCCATGTATCT+GGG 0.524709 8_4:-38662228 None:intergenic
GAAAAGAAAGCAAAATAGAA+TGG 0.525233 8_4:-38662372 None:intergenic
TCTTCGAAGAGAATGCATCC+TGG 0.528389 8_4:+38662806 Msa1325870:three_prime_UTR
TACCTGGGGTCCCAGATACA+TGG 0.530934 8_4:+38662218 Msa1325870:CDS
AATTGGAGGTGGCAGCCTCA+TGG 0.531507 8_4:+38660259 Msa1325870:CDS
GTTGCAAATGTACATGTCAA+AGG 0.533678 8_4:-38662563 None:intergenic
TCAGTTTACGGCGAGCGAAA+GGG 0.533883 8_4:+38662130 Msa1325870:CDS
TTCCATGTATCTGGGACCCC+AGG 0.534611 8_4:-38662220 None:intergenic
GGTTCGTCATATTGGGGCAC+AGG 0.534995 8_4:+38661995 Msa1325870:CDS
TGGTGTTCGAGAGTTATGTT+TGG 0.536569 8_4:+38661083 Msa1325870:CDS
GTTCTGTTATACAATCCAAA+AGG 0.542969 8_4:-38662407 None:intergenic
CATTCACTGGTGTTTACCTG+GGG 0.545869 8_4:+38662204 Msa1325870:CDS
CTTTCTACACAAATTGGAGG+TGG 0.550918 8_4:+38660248 Msa1325870:CDS
GTACAATCTGTAATTCCTGA+AGG 0.559209 8_4:+38660545 Msa1325870:CDS
TCTCCCATTCTTCATGCAAG+TGG 0.561570 8_4:-38660218 None:intergenic
TGGTATATTTGTGAATGATA+GGG 0.561774 8_4:-38663300 Msa1325880:CDS
TATGAAGATATTTAGAGTTG+AGG 0.563429 8_4:+38660595 Msa1325870:CDS
ATGCATTCTCTTCGAAGAAG+AGG 0.567019 8_4:-38662801 Msa1325880:CDS
AGCAAGCTTCTGAAACTGAG+TGG 0.568778 8_4:-38662648 Msa1325880:CDS
TAATTGGGTGATGTTCAATA+GGG 0.568867 8_4:-38662080 None:intergenic
CCGGAGGATCGCATTGAGGA+GGG 0.569780 8_4:+38660106 Msa1325870:CDS
ACTCACGTAGCATTGATGAA+AGG 0.570089 8_4:-38661118 None:intergenic
TTAAATCGTCCGAGAGTTGG+TGG 0.570103 8_4:+38662709 Msa1325870:three_prime_UTR
GTAACTTACCACAAATGTGT+TGG 0.570891 8_4:-38661576 None:intergenic
AACATGTGCAACAACTTCAA+AGG 0.571932 8_4:-38660452 None:intergenic
TGCTGTAAATAATAATCAAG+TGG 0.573884 8_4:-38662621 None:intergenic
CGTCACGACAGCATATAAGT+TGG 0.576399 8_4:+38661476 Msa1325870:CDS
GCAAATGTACATGTCAAAGG+TGG 0.579152 8_4:-38662560 None:intergenic
TAGCTAAGCATGGCAAACAT+TGG 0.579693 8_4:+38661044 Msa1325870:CDS
ATTTGAAGGGAAATGGGTAT+GGG 0.582984 8_4:+38660138 Msa1325870:CDS
GCAAGCTTCTGAAACTGAGT+GGG 0.583735 8_4:-38662647 Msa1325880:CDS
TGAAGTTGTTGCACATGTTG+AGG 0.585215 8_4:+38660456 Msa1325870:CDS
AGGGTTGCAATGTATTTGAA+GGG 0.588210 8_4:+38660125 Msa1325870:CDS
TCAGGTCTTCGATTGATCGC+CGG 0.591844 8_4:+38659930 Msa1325870:CDS
TTCGAAGAAGAGGTTAGCAA+AGG 0.592548 8_4:-38662791 Msa1325880:CDS
CAAGATTTACCACCAACTCT+CGG 0.593259 8_4:-38662718 Msa1325880:CDS
CTCATGGATGCAACCTCCCA+AGG 0.597976 8_4:+38660275 Msa1325870:CDS
TGGCAAACATTGGCAAGGAG+TGG 0.599503 8_4:+38661054 Msa1325870:CDS
CTCTTCTTCATAAAGAGGAT+AGG 0.600163 8_4:-38660170 None:intergenic
AGATCATGCAACAAATCATA+CGG 0.601570 8_4:+38660991 Msa1325870:CDS
ACCAGTTGTTGTGTTGCCGG+AGG 0.602457 8_4:+38660090 Msa1325870:CDS
ACGGCATGTCATCTGGTGGA+AGG 0.604816 8_4:+38660059 Msa1325870:CDS
ATTGGAGACTCATTACAAAG+AGG 0.605444 8_4:+38660497 Msa1325870:CDS
ACTCTAAATATCTTCATAGG+TGG 0.606450 8_4:-38660590 None:intergenic
CTTGGGAGGTTGCATCCATG+AGG 0.606796 8_4:-38660274 None:intergenic
CAAATGTACATGTCAAAGGT+GGG 0.612052 8_4:-38662559 None:intergenic
CTTGACTCAATAGCTAAGCA+TGG 0.612907 8_4:+38661034 Msa1325870:CDS
CTCTACGGCATGTCATCTGG+TGG 0.613992 8_4:+38660055 Msa1325870:CDS
AGCATCATTCAGATTGATGG+TGG 0.614413 8_4:+38662322 Msa1325870:three_prime_UTR
AAAGTGTTGGTTACCTTGGG+AGG 0.620369 8_4:-38660288 None:intergenic
TAAATAAGACACAAATGCTG+TGG 0.621001 8_4:-38662594 None:intergenic
GTTGCCGGAGGATCGCATTG+AGG 0.623555 8_4:+38660102 Msa1325870:CDS
TCATACGGTACATAAACGGA+TGG 0.623999 8_4:+38661006 Msa1325870:CDS
AATGAATCATACCCAATACA+AGG 0.626400 8_4:+38661974 Msa1325870:CDS
GTTGGTGGTAAATCTTGACC+TGG 0.628676 8_4:+38662724 Msa1325870:three_prime_UTR
GAGATACAAACTGTAAACAA+AGG 0.634145 8_4:+38662453 Msa1325870:three_prime_UTR
TGCATCGATTGAATACTACT+GGG 0.637341 8_4:+38660943 Msa1325870:CDS
AAGCATGGCAAACATTGGCA+AGG 0.639024 8_4:+38661049 Msa1325870:CDS
TGGTCTGCTTGACCAAGTAA+GGG 0.642359 8_4:-38660198 None:intergenic
ATACAAGGTTCGTCATATTG+GGG 0.647384 8_4:+38661989 Msa1325870:CDS
GAGACAGCATTGATATGAGA+TGG 0.669371 8_4:-38659907 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTCAATTTTTTATTTTATTC+TGG + chr8_4:38661860-38661879 Msa1325870:intron 10.0%
!! TAATAACTCTAGTTATTATT+AGG - chr8_4:38661765-38661784 None:intergenic 15.0%
!!! AACCTAAACAATATAATTTT+CGG + chr8_4:38662528-38662547 Msa1325870:three_prime_UTR 15.0%
!! ATATAATTGGGAAAATTGAT+TGG - chr8_4:38659958-38659977 None:intergenic 20.0%
!! GAAGTGAATACAATATAATT+GGG - chr8_4:38659970-38659989 None:intergenic 20.0%
!! AGAAGTGAATACAATATAAT+TGG - chr8_4:38659971-38659990 None:intergenic 20.0%
!!! ATTTTTTTTAAGCTCACAAT+CGG - chr8_4:38660351-38660370 None:intergenic 20.0%
!! AACAAAAGAATGATGTTTAT+TGG + chr8_4:38660479-38660498 Msa1325870:CDS 20.0%
!! TTAAGTTATTTATGAAAGCA+TGG - chr8_4:38660664-38660683 None:intergenic 20.0%
!!! GCTAGAATTTACTTTTTAAA+GGG - chr8_4:38661246-38661265 None:intergenic 20.0%
!! AATCAGACAAATTATTGAAT+TGG + chr8_4:38661398-38661417 Msa1325870:intron 20.0%
!!! AAAAATACATTTTGAGTAAG+TGG - chr8_4:38661543-38661562 None:intergenic 20.0%
!!! ATTATCAAGTTTTGCTAATA+AGG + chr8_4:38661635-38661654 Msa1325870:intron 20.0%
!!! CTTGAGTTTTATTCAAAAAA+TGG - chr8_4:38662933-38662952 Msa1325880:intron 20.0%
!!! CATTTTTTGAATAAAACTCA+AGG + chr8_4:38662931-38662950 Msa1325870:intron 20.0%
!!! TTAAAGTGTTTTTCTTAGAA+TGG - chr8_4:38663047-38663066 Msa1325880:intron 20.0%
!! GAATAAGTTGTTCTATATAT+TGG - chr8_4:38663074-38663093 Msa1325880:intron 20.0%
!! GTTAAAATGTGAAAAAGTGT+TGG - chr8_4:38660304-38660323 None:intergenic 25.0%
! TCAACTCTAAATATCTTCAT+AGG - chr8_4:38660596-38660615 None:intergenic 25.0%
!! TATGAAGATATTTAGAGTTG+AGG + chr8_4:38660595-38660614 Msa1325870:CDS 25.0%
! GACATAAATATTTGTGAGAT+TGG - chr8_4:38660793-38660812 None:intergenic 25.0%
!!! AAATTCCTATAGCTTTGTTT+TGG + chr8_4:38660909-38660928 Msa1325870:intron 25.0%
!!! CTTTTTAAAGGGAATAAGTA+AGG - chr8_4:38661235-38661254 None:intergenic 25.0%
!!! GGCTAGAATTTACTTTTTAA+AGG - chr8_4:38661247-38661266 None:intergenic 25.0%
!!! AGAAATTTATTTTCTTCTCC+AGG + chr8_4:38661912-38661931 Msa1325870:intron 25.0%
!! TTTTCTGTACTCTGATAATT+GGG - chr8_4:38662098-38662117 None:intergenic 25.0%
! TCTTAAACAGATATGCATAT+AGG - chr8_4:38662252-38662271 None:intergenic 25.0%
! GAAAAGAAAGCAAAATAGAA+TGG - chr8_4:38662375-38662394 None:intergenic 25.0%
! AGGCTAAAATCATAAACTAT+AGG - chr8_4:38662496-38662515 None:intergenic 25.0%
! TGCCGAAAATTATATTGTTT+AGG - chr8_4:38662533-38662552 None:intergenic 25.0%
! TGCTGTAAATAATAATCAAG+TGG - chr8_4:38662624-38662643 None:intergenic 25.0%
!! CATTTTGTAGAAAAGACTAA+TGG + chr8_4:38663101-38663120 Msa1325870:intron 25.0%
! GACCAAAAAAAAAAGACTAA+TGG + chr8_4:38663225-38663244 Msa1325870:intron 25.0%
!!! CTCCATTAGTCTTTTTTTTT+TGG - chr8_4:38663230-38663249 Msa1325880:intron 25.0%
! TGGTATATTTGTGAATGATA+GGG - chr8_4:38663303-38663322 Msa1325880:CDS 25.0%
! CTCTATTAAATTAAAGTTGG+AGG - chr8_4:38663363-38663382 Msa1325880:CDS 25.0%
! ACGCTCTATTAAATTAAAGT+TGG - chr8_4:38663366-38663385 Msa1325880:CDS 25.0%
TTCTAATCTTTGCAGTTACA+AGG + chr8_4:38659987-38660006 Msa1325870:CDS 30.0%
CAATGTATTTGAAGGGAAAT+GGG + chr8_4:38660132-38660151 Msa1325870:CDS 30.0%
CAATTTGTGTAGAAAGAATC+AGG - chr8_4:38660244-38660263 None:intergenic 30.0%
CTGATTCTTTCTACACAAAT+TGG + chr8_4:38660242-38660261 Msa1325870:CDS 30.0%
ATTCTTTCTACACAAATTGG+AGG + chr8_4:38660245-38660264 Msa1325870:CDS 30.0%
ATTTGAGTCTATGATCTGTT+TGG + chr8_4:38660523-38660542 Msa1325870:CDS 30.0%
ACTCTAAATATCTTCATAGG+TGG - chr8_4:38660593-38660612 None:intergenic 30.0%
! GAAATTGATTCAACCATGAA+TGG - chr8_4:38660971-38660990 None:intergenic 30.0%
AGATCATGCAACAAATCATA+CGG + chr8_4:38660991-38661010 Msa1325870:CDS 30.0%
CAAATCATACGGTACATAAA+CGG + chr8_4:38661002-38661021 Msa1325870:CDS 30.0%
GAACAATGCATTATATGCAA+GGG + chr8_4:38661188-38661207 Msa1325870:intron 30.0%
! CTTTTTGTCAAGTATTTTCG+TGG - chr8_4:38661268-38661287 None:intergenic 30.0%
TCAAGTACATCTCTATTCAA+GGG - chr8_4:38661294-38661313 None:intergenic 30.0%
TTCAAGTACATCTCTATTCA+AGG - chr8_4:38661295-38661314 None:intergenic 30.0%
TGTACTTGAATGAATGTTCA+TGG + chr8_4:38661305-38661324 Msa1325870:intron 30.0%
!! TGTGCTTTTTACACAACTAT+AGG - chr8_4:38661337-38661356 None:intergenic 30.0%
! GTTGTGTAAAAAGCACAAAA+TGG + chr8_4:38661340-38661359 Msa1325870:intron 30.0%
!! AACATGTTTTGTTCCAGATA+TGG + chr8_4:38661426-38661445 Msa1325870:intron 30.0%
TTATATTCTTGGACTTCATC+TGG - chr8_4:38661456-38661475 None:intergenic 30.0%
!! ATAAGTTGGCCTTAAAAACA+TGG + chr8_4:38661490-38661509 Msa1325870:CDS 30.0%
!! TAAGTTGGCCTTAAAAACAT+GGG + chr8_4:38661491-38661510 Msa1325870:CDS 30.0%
!! ATACATTTTGAGTAAGTGGT+TGG - chr8_4:38661539-38661558 None:intergenic 30.0%
AAACATTCACCAAATCATGT+GGG - chr8_4:38661721-38661740 None:intergenic 30.0%
AATGAATCATACCCAATACA+AGG + chr8_4:38661974-38661993 Msa1325870:CDS 30.0%
AATATGACGAACCTTGTATT+GGG - chr8_4:38661988-38662007 None:intergenic 30.0%
AATACAAGGTTCGTCATATT+GGG + chr8_4:38661988-38662007 Msa1325870:CDS 30.0%
TAATTGGGTGATGTTCAATA+GGG - chr8_4:38662083-38662102 None:intergenic 30.0%
ATAATTGGGTGATGTTCAAT+AGG - chr8_4:38662084-38662103 None:intergenic 30.0%
! CTTTTCTGTACTCTGATAAT+TGG - chr8_4:38662099-38662118 None:intergenic 30.0%
! TGCAATCAGCAAAAGATTTT+GGG - chr8_4:38662186-38662205 None:intergenic 30.0%
! ATGCAATCAGCAAAAGATTT+TGG - chr8_4:38662187-38662206 None:intergenic 30.0%
TATACAATCCAAAAGGCAAA+AGG - chr8_4:38662403-38662422 None:intergenic 30.0%
GTTCTGTTATACAATCCAAA+AGG - chr8_4:38662410-38662429 None:intergenic 30.0%
GAGATACAAACTGTAAACAA+AGG + chr8_4:38662453-38662472 Msa1325870:three_prime_UTR 30.0%
TAAATAAGACACAAATGCTG+TGG - chr8_4:38662597-38662616 None:intergenic 30.0%
AGTATGAACAACTAGCAATA+TGG - chr8_4:38662771-38662790 Msa1325880:CDS 30.0%
!!! CCATTACTGTCATTTTTCAT+GGG - chr8_4:38662844-38662863 Msa1325880:intron 30.0%
!!! TCCATTACTGTCATTTTTCA+TGG - chr8_4:38662845-38662864 Msa1325880:intron 30.0%
GACATTGCATATTATATGCA+GGG + chr8_4:38663131-38663150 Msa1325870:intron 30.0%
ACATTGCATATTATATGCAG+GGG + chr8_4:38663132-38663151 Msa1325870:intron 30.0%
GTGGTATATTTGTGAATGAT+AGG - chr8_4:38663304-38663323 Msa1325880:CDS 30.0%
CATTGATATGAGATGGTTGA+AGG - chr8_4:38659903-38659922 None:intergenic 35.0%
TTGGGAAAATTGATTGGATC+CGG - chr8_4:38659952-38659971 None:intergenic 35.0%
AGGGTTGCAATGTATTTGAA+GGG + chr8_4:38660125-38660144 Msa1325870:CDS 35.0%
GCAATGTATTTGAAGGGAAA+TGG + chr8_4:38660131-38660150 Msa1325870:CDS 35.0%
TATTTGAAGGGAAATGGGTA+TGG + chr8_4:38660137-38660156 Msa1325870:CDS 35.0%
ATTTGAAGGGAAATGGGTAT+GGG + chr8_4:38660138-38660157 Msa1325870:CDS 35.0%
CTCTTCTTCATAAAGAGGAT+AGG - chr8_4:38660173-38660192 None:intergenic 35.0%
CAACTCTCTTCTTCATAAAG+AGG - chr8_4:38660178-38660197 None:intergenic 35.0%
!! GAAAAAGTGTTGGTTACCTT+GGG - chr8_4:38660294-38660313 None:intergenic 35.0%
!! TGAAAAAGTGTTGGTTACCT+TGG - chr8_4:38660295-38660314 None:intergenic 35.0%
! CTGAAGTCAAGAAAAGCATA+AGG - chr8_4:38660425-38660444 None:intergenic 35.0%
! CTTATGCTTTTCTTGACTTC+AGG + chr8_4:38660423-38660442 Msa1325870:intron 35.0%
AACATGTGCAACAACTTCAA+AGG - chr8_4:38660455-38660474 None:intergenic 35.0%
ATTGGAGACTCATTACAAAG+AGG + chr8_4:38660497-38660516 Msa1325870:CDS 35.0%
GTACAATCTGTAATTCCTGA+AGG + chr8_4:38660545-38660564 Msa1325870:CDS 35.0%
TCTTCATAGGTGGAATTCTT+TGG - chr8_4:38660583-38660602 None:intergenic 35.0%
!! ATGCATCGATTGAATACTAC+TGG + chr8_4:38660942-38660961 Msa1325870:CDS 35.0%
!! TGCATCGATTGAATACTACT+GGG + chr8_4:38660943-38660962 Msa1325870:CDS 35.0%
GTGAGTATATCTATAGACCT+TGG + chr8_4:38661135-38661154 Msa1325870:intron 35.0%
GTATATCTATAGACCTTGGT+TGG + chr8_4:38661139-38661158 Msa1325870:intron 35.0%
GGAACAATGCATTATATGCA+AGG + chr8_4:38661187-38661206 Msa1325870:intron 35.0%
! AAGGGAATAAGTAAGGTGTT+TGG - chr8_4:38661228-38661247 None:intergenic 35.0%
!! CCAATTTGCCCATGTTTTTA+AGG - chr8_4:38661502-38661521 None:intergenic 35.0%
CCTTAAAAACATGGGCAAAT+TGG + chr8_4:38661499-38661518 Msa1325870:CDS 35.0%
GTAACTTACCACAAATGTGT+TGG - chr8_4:38661579-38661598 None:intergenic 35.0%
GCAGAGTCACTCTTTAAATT+TGG - chr8_4:38661681-38661700 None:intergenic 35.0%
CAAACATTCACCAAATCATG+TGG - chr8_4:38661722-38661741 None:intergenic 35.0%
CAATATGACGAACCTTGTAT+TGG - chr8_4:38661989-38662008 None:intergenic 35.0%
CAATACAAGGTTCGTCATAT+TGG + chr8_4:38661987-38662006 Msa1325870:CDS 35.0%
ATACAAGGTTCGTCATATTG+GGG + chr8_4:38661989-38662008 Msa1325870:CDS 35.0%
TAGATCTCTGTTCTTTAGTC+AGG - chr8_4:38662162-38662181 None:intergenic 35.0%
GGATTTCATTCCATGTATCT+GGG - chr8_4:38662231-38662250 None:intergenic 35.0%
AGGATTTCATTCCATGTATC+TGG - chr8_4:38662232-38662251 None:intergenic 35.0%
ACAAGCATCATTCAGATTGA+TGG + chr8_4:38662319-38662338 Msa1325870:three_prime_UTR 35.0%
!! TGATTTTAGCCTGTTCTTCA+TGG + chr8_4:38662504-38662523 Msa1325870:three_prime_UTR 35.0%
! TTTAGGTTTCCATGAAGAAC+AGG - chr8_4:38662516-38662535 None:intergenic 35.0%
CAAATGTACATGTCAAAGGT+GGG - chr8_4:38662562-38662581 None:intergenic 35.0%
GTTGCAAATGTACATGTCAA+AGG - chr8_4:38662566-38662585 None:intergenic 35.0%
GAACAACTAGCAATATGGTT+TGG - chr8_4:38662766-38662785 Msa1325880:CDS 35.0%
CCCATGAAAAATGACAGTAA+TGG + chr8_4:38662841-38662860 Msa1325870:intron 35.0%
GAATAAAACTCAAGGAAACG+AGG + chr8_4:38662939-38662958 Msa1325870:intron 35.0%
TAGAAAAGACTAATGGAGTC+AGG + chr8_4:38663108-38663127 Msa1325870:intron 35.0%
AGAAAAGACTAATGGAGTCA+GGG + chr8_4:38663109-38663128 Msa1325870:intron 35.0%
GGACATTGCATATTATATGC+AGG + chr8_4:38663130-38663149 Msa1325870:intron 35.0%
CTCATAAAGGTGAATAAGTG+GGG - chr8_4:38663179-38663198 Msa1325880:intron 35.0%
CCTCATAAAGGTGAATAAGT+GGG - chr8_4:38663180-38663199 Msa1325880:intron 35.0%
ACCTCATAAAGGTGAATAAG+TGG - chr8_4:38663181-38663200 Msa1325880:intron 35.0%
GCTAGAAATTCACCTCATAA+AGG - chr8_4:38663192-38663211 Msa1325880:intron 35.0%
CCAAAAGCTTAGATCGTATA+AGG - chr8_4:38663255-38663274 Msa1325880:CDS 35.0%
! CCTTATACGATCTAAGCTTT+TGG + chr8_4:38663252-38663271 Msa1325870:intron 35.0%
!! GAGACAGCATTGATATGAGA+TGG - chr8_4:38659910-38659929 None:intergenic 40.0%
TCATATCAATGCTGTCTCTC+AGG + chr8_4:38659912-38659931 Msa1325870:exon 40.0%
!! AGCCATGTTTTTCAGCTCTA+CGG + chr8_4:38660040-38660059 Msa1325870:CDS 40.0%
ATTACCAGTTGTTGTGTTGC+CGG + chr8_4:38660087-38660106 Msa1325870:CDS 40.0%
GAGGGTTGCAATGTATTTGA+AGG + chr8_4:38660124-38660143 Msa1325870:CDS 40.0%
AGACCACTTGCATGAAGAAT+GGG + chr8_4:38660215-38660234 Msa1325870:CDS 40.0%
CTTTCTACACAAATTGGAGG+TGG + chr8_4:38660248-38660267 Msa1325870:CDS 40.0%
ACTTCGCCTTGATTACTCTT+AGG + chr8_4:38660322-38660341 Msa1325870:intron 40.0%
CGGAAACCTAAGAGTAATCA+AGG - chr8_4:38660331-38660350 None:intergenic 40.0%
TGAAGTTGTTGCACATGTTG+AGG + chr8_4:38660456-38660475 Msa1325870:CDS 40.0%
CATAGGTGGAATTCTTTGGA+GGG - chr8_4:38660579-38660598 None:intergenic 40.0%
TCATAGGTGGAATTCTTTGG+AGG - chr8_4:38660580-38660599 None:intergenic 40.0%
!!! TCCTATAGCTTTGTTTTGGC+AGG + chr8_4:38660913-38660932 Msa1325870:intron 40.0%
TCCTGCCAAAACAAAGCTAT+AGG - chr8_4:38660917-38660936 None:intergenic 40.0%
TCATACGGTACATAAACGGA+TGG + chr8_4:38661006-38661025 Msa1325870:CDS 40.0%
CTTGACTCAATAGCTAAGCA+TGG + chr8_4:38661034-38661053 Msa1325870:CDS 40.0%
TAGCTAAGCATGGCAAACAT+TGG + chr8_4:38661044-38661063 Msa1325870:CDS 40.0%
TGGTGTTCGAGAGTTATGTT+TGG + chr8_4:38661083-38661102 Msa1325870:CDS 40.0%
TGTTCGAGAGTTATGTTTGG+TGG + chr8_4:38661086-38661105 Msa1325870:CDS 40.0%
!! CTCACGTAGCATTGATGAAA+GGG - chr8_4:38661120-38661139 None:intergenic 40.0%
!! ACTCACGTAGCATTGATGAA+AGG - chr8_4:38661121-38661140 None:intergenic 40.0%
AATGCATTATATGCAAGGGC+CGG + chr8_4:38661192-38661211 Msa1325870:intron 40.0%
TTCATCTGGTGATCCATATC+TGG - chr8_4:38661442-38661461 None:intergenic 40.0%
CTGTCGTGACGTTATATTCT+TGG - chr8_4:38661467-38661486 None:intergenic 40.0%
GTATGTCTCCAACACATTTG+TGG + chr8_4:38661568-38661587 Msa1325870:CDS 40.0%
AAAGTGAAGCCCACATGATT+TGG + chr8_4:38661709-38661728 Msa1325870:intron 40.0%
! TTATTTTCTTCTCCAGGAGC+TGG + chr8_4:38661918-38661937 Msa1325870:intron 40.0%
! TATTTTCTTCTCCAGGAGCT+GGG + chr8_4:38661919-38661938 Msa1325870:intron 40.0%
! AAGCAGTTTTCATCACTTCC+TGG - chr8_4:38661953-38661972 None:intergenic 40.0%
GATGCTCACACATCAGTTTA+CGG + chr8_4:38662118-38662137 Msa1325870:CDS 40.0%
!! CTTTTGCTGATTGCATTCAC+TGG + chr8_4:38662191-38662210 Msa1325870:CDS 40.0%
AGCATCATTCAGATTGATGG+TGG + chr8_4:38662322-38662341 Msa1325870:three_prime_UTR 40.0%
! TTCCAACACCTTTTGCCTTT+TGG + chr8_4:38662392-38662411 Msa1325870:three_prime_UTR 40.0%
! ATCCAAAAGGCAAAAGGTGT+TGG - chr8_4:38662397-38662416 None:intergenic 40.0%
GCAAATGTACATGTCAAAGG+TGG - chr8_4:38662563-38662582 None:intergenic 40.0%
CGTTGAGTTCACATATGTTC+TGG + chr8_4:38662684-38662703 Msa1325870:three_prime_UTR 40.0%
GAATTAAATCGTCCGAGAGT+TGG + chr8_4:38662706-38662725 Msa1325870:three_prime_UTR 40.0%
CAAGATTTACCACCAACTCT+CGG - chr8_4:38662721-38662740 Msa1325880:CDS 40.0%
TTCGAAGAAGAGGTTAGCAA+AGG - chr8_4:38662794-38662813 Msa1325880:CDS 40.0%
ATGCATTCTCTTCGAAGAAG+AGG - chr8_4:38662804-38662823 Msa1325880:CDS 40.0%
CCCACTTATTCACCTTTATG+AGG + chr8_4:38663177-38663196 Msa1325870:intron 40.0%
!! TTTTTGGTCTAGTAGCCTAG+TGG - chr8_4:38663214-38663233 Msa1325880:intron 40.0%
GATACAAAGCGTGAAGATAG+TGG - chr8_4:38663323-38663342 Msa1325880:CDS 40.0%
GCTTGCTCTTCAAGCTATCT+AGG - chr8_4:38660018-38660037 None:intergenic 45.0%
TGCCGTAGAGCTGAAAAACA+TGG - chr8_4:38660045-38660064 None:intergenic 45.0%
AGAAGAGAGTTGCCCTTACT+TGG + chr8_4:38660186-38660205 Msa1325870:CDS 45.0%
TGGTCTGCTTGACCAAGTAA+GGG - chr8_4:38660201-38660220 None:intergenic 45.0%
CAGACCACTTGCATGAAGAA+TGG + chr8_4:38660214-38660233 Msa1325870:CDS 45.0%
TCTCCCATTCTTCATGCAAG+TGG - chr8_4:38660221-38660240 None:intergenic 45.0%
!! AAAGTGTTGGTTACCTTGGG+AGG - chr8_4:38660291-38660310 None:intergenic 45.0%
TGGAGGGATTTCTTTCCTTC+AGG - chr8_4:38660563-38660582 None:intergenic 45.0%
ATACTACTGGGCTCCATTCA+TGG + chr8_4:38660955-38660974 Msa1325870:CDS 45.0%
AAGCATGGCAAACATTGGCA+AGG + chr8_4:38661049-38661068 Msa1325870:CDS 45.0%
! TTGGCAAGGAGTGGACATTT+TGG + chr8_4:38661063-38661082 Msa1325870:CDS 45.0%
TGTCAACTGAGCTATGCTCA+CGG - chr8_4:38661167-38661186 None:intergenic 45.0%
CGTCACGACAGCATATAAGT+TGG + chr8_4:38661476-38661495 Msa1325870:CDS 45.0%
TGCATTCACTGGTGTTTACC+TGG + chr8_4:38662202-38662221 Msa1325870:CDS 45.0%
GCATTCACTGGTGTTTACCT+GGG + chr8_4:38662203-38662222 Msa1325870:CDS 45.0%
CATTCACTGGTGTTTACCTG+GGG + chr8_4:38662204-38662223 Msa1325870:CDS 45.0%
!! GCAAGCTTCTGAAACTGAGT+GGG - chr8_4:38662650-38662669 Msa1325880:CDS 45.0%
!! AGCAAGCTTCTGAAACTGAG+TGG - chr8_4:38662651-38662670 Msa1325880:CDS 45.0%
TTAAATCGTCCGAGAGTTGG+TGG + chr8_4:38662709-38662728 Msa1325870:three_prime_UTR 45.0%
!! GTTGGTGGTAAATCTTGACC+TGG + chr8_4:38662724-38662743 Msa1325870:three_prime_UTR 45.0%
TCTTCGAAGAGAATGCATCC+TGG + chr8_4:38662806-38662825 Msa1325870:three_prime_UTR 45.0%
CATGGGACAGAAAAGAATCC+AGG - chr8_4:38662827-38662846 Msa1325880:intron 45.0%
TCAAGGAAACGAGGAAGATG+TGG + chr8_4:38662948-38662967 Msa1325870:intron 45.0%
TGCATATTATATGCAGGGGC+CGG + chr8_4:38663136-38663155 Msa1325870:intron 45.0%
!! GAGGTGAATTTCTAGCCACT+AGG + chr8_4:38663196-38663215 Msa1325870:intron 45.0%
TCAGGTCTTCGATTGATCGC+CGG + chr8_4:38659930-38659949 Msa1325870:CDS 50.0%
GTGGTCTGCTTGACCAAGTA+AGG - chr8_4:38660202-38660221 None:intergenic 50.0%
TGGCAAACATTGGCAAGGAG+TGG + chr8_4:38661054-38661073 Msa1325870:CDS 50.0%
GTCAACTGAGCTATGCTCAC+GGG - chr8_4:38661166-38661185 None:intergenic 50.0%
GTGAGCATAGCTCAGTTGAC+AGG + chr8_4:38661166-38661185 Msa1325870:intron 50.0%
! GGTGTTTGGAGTTCGAACTC+CGG - chr8_4:38661214-38661233 None:intergenic 50.0%
ATCAGTTTACGGCGAGCGAA+AGG + chr8_4:38662129-38662148 Msa1325870:CDS 50.0%
TCAGTTTACGGCGAGCGAAA+GGG + chr8_4:38662130-38662149 Msa1325870:CDS 50.0%
GCATATTATATGCAGGGGCC+GGG + chr8_4:38663137-38663156 Msa1325870:intron 50.0%
AGGTGAATAAGTGGGGAGTC+CGG - chr8_4:38663172-38663191 Msa1325880:intron 50.0%
CAGCTCTACGGCATGTCATC+TGG + chr8_4:38660052-38660071 Msa1325870:CDS 55.0%
CTCTACGGCATGTCATCTGG+TGG + chr8_4:38660055-38660074 Msa1325870:CDS 55.0%
ACGGCATGTCATCTGGTGGA+AGG + chr8_4:38660059-38660078 Msa1325870:CDS 55.0%
ACCAGTTGTTGTGTTGCCGG+AGG + chr8_4:38660090-38660109 Msa1325870:CDS 55.0%
TCCTCCGGCAACACAACAAC+TGG - chr8_4:38660094-38660113 None:intergenic 55.0%
AATTGGAGGTGGCAGCCTCA+TGG + chr8_4:38660259-38660278 Msa1325870:CDS 55.0%
CTTGGGAGGTTGCATCCATG+AGG - chr8_4:38660277-38660296 None:intergenic 55.0%
CTCATGGATGCAACCTCCCA+AGG + chr8_4:38660275-38660294 Msa1325870:CDS 55.0%
TATGCTCACGGGACCAACCA+AGG - chr8_4:38661155-38661174 None:intergenic 55.0%
TCTTCTCCAGGAGCTGGGAA+TGG + chr8_4:38661924-38661943 Msa1325870:intron 55.0%
GGTTCGTCATATTGGGGCAC+AGG + chr8_4:38661995-38662014 Msa1325870:CDS 55.0%
TACCTGGGGTCCCAGATACA+TGG + chr8_4:38662218-38662237 Msa1325870:CDS 55.0%
! TTCCATGTATCTGGGACCCC+AGG - chr8_4:38662223-38662242 None:intergenic 55.0%
GGAGATGCTGATATCGAGCC+AGG - chr8_4:38662745-38662764 Msa1325880:CDS 55.0%
GTGAATAAGTGGGGAGTCCG+GGG - chr8_4:38663170-38663189 Msa1325880:intron 55.0%
GGTGAATAAGTGGGGAGTCC+GGG - chr8_4:38663171-38663190 Msa1325880:intron 55.0%
GTTGCCGGAGGATCGCATTG+AGG + chr8_4:38660102-38660121 Msa1325870:CDS 60.0%
CCCTCCTCAATGCGATCCTC+CGG - chr8_4:38660109-38660128 None:intergenic 60.0%
CCGGAGGATCGCATTGAGGA+GGG + chr8_4:38660106-38660125 Msa1325870:CDS 60.0%
TGGCTTCCATTCCCAGCTCC+TGG - chr8_4:38661933-38661952 None:intergenic 60.0%
AGGAGCTGGGAATGGAAGCC+AGG + chr8_4:38661932-38661951 Msa1325870:intron 60.0%
GCCGGAGGATCGCATTGAGG+AGG + chr8_4:38660105-38660124 Msa1325870:CDS 65.0%
GGAGTCCGGGGTTCGAATCC+CGG - chr8_4:38663158-38663177 Msa1325880:intron 65.0%
AGGGGCCGGGATTCGAACCC+CGG + chr8_4:38663150-38663169 Msa1325870:intron 70.0%
Chromosome Type Strat End Strand Name
chr8_4 gene 38659870 38663390 38659870 ID=Msa1325870;Name=Msa1325870
chr8_4 mRNA 38659870 38663390 38659870 ID=Msa1325870-mRNA-1;Parent=Msa1325870;Name=Msa1325870-mRNA-1;_AED=0.02;_eAED=0.02;_QI=50|1|1|1|0.8|0.66|6|682|417
chr8_4 exon 38659870 38660296 38659870 ID=Msa1325870-mRNA-1:exon:11713;Parent=Msa1325870-mRNA-1
chr8_4 exon 38660445 38660616 38660445 ID=Msa1325870-mRNA-1:exon:11714;Parent=Msa1325870-mRNA-1
chr8_4 exon 38660935 38661134 38660935 ID=Msa1325870-mRNA-1:exon:11715;Parent=Msa1325870-mRNA-1
chr8_4 exon 38661443 38661589 38661443 ID=Msa1325870-mRNA-1:exon:11716;Parent=Msa1325870-mRNA-1
chr8_4 exon 38661934 38662845 38661934 ID=Msa1325870-mRNA-1:exon:11717;Parent=Msa1325870-mRNA-1
chr8_4 exon 38663263 38663390 38663263 ID=Msa1325870-mRNA-1:exon:11718;Parent=Msa1325870-mRNA-1
chr8_4 five_prime_UTR 38659870 38659919 38659870 ID=Msa1325870-mRNA-1:five_prime_utr;Parent=Msa1325870-mRNA-1
chr8_4 CDS 38659920 38660296 38659920 ID=Msa1325870-mRNA-1:cds;Parent=Msa1325870-mRNA-1
chr8_4 CDS 38660445 38660616 38660445 ID=Msa1325870-mRNA-1:cds;Parent=Msa1325870-mRNA-1
chr8_4 CDS 38660935 38661134 38660935 ID=Msa1325870-mRNA-1:cds;Parent=Msa1325870-mRNA-1
chr8_4 CDS 38661443 38661589 38661443 ID=Msa1325870-mRNA-1:cds;Parent=Msa1325870-mRNA-1
chr8_4 CDS 38661934 38662291 38661934 ID=Msa1325870-mRNA-1:cds;Parent=Msa1325870-mRNA-1
chr8_4 three_prime_UTR 38662292 38662845 38662292 ID=Msa1325870-mRNA-1:three_prime_utr;Parent=Msa1325870-mRNA-1
chr8_4 three_prime_UTR 38663263 38663390 38663263 ID=Msa1325870-mRNA-1:three_prime_utr;Parent=Msa1325870-mRNA-1
Gene Sequence

>Msa1325870

ATGCTGTCTCTCAGGTCTTCGATTGATCGCCGGATCCAATCAATTTTCCCAATTATATTGTATTCACTTCTAATCTTTGCAGTTACAAGGTTAGTCCTAGATAGCTTGAAGAGCAAGCAAAGCCATGTTTTTCAGCTCTACGGCATGTCATCTGGTGGAAGGAATCGATTACCAGTTGTTGTGTTGCCGGAGGATCGCATTGAGGAGGGTTGCAATGTATTTGAAGGGAAATGGGTATGGGATAATGTGTCCTATCCTCTTTATGAAGAAGAGAGTTGCCCTTACTTGGTCAAGCAGACCACTTGCATGAAGAATGGGAGACCTGATTCTTTCTACACAAATTGGAGGTGGCAGCCTCATGGATGCAACCTCCCAAGGTTTGATCCTTTGAAGTTGTTGCACATGTTGAGGAACAAAAGAATGATGTTTATTGGAGACTCATTACAAAGAGGTCAATTTGAGTCTATGATCTGTTTGGTACAATCTGTAATTCCTGAAGGAAAGAAATCCCTCCAAAGAATTCCACCTATGAAGATATTTAGAGTTGAGGAGTTTAATGCATCGATTGAATACTACTGGGCTCCATTCATGGTTGAATCAATTTCAGATCATGCAACAAATCATACGGTACATAAACGGATGGTGATGCTTGACTCAATAGCTAAGCATGGCAAACATTGGCAAGGAGTGGACATTTTGGTGTTCGAGAGTTATGTTTGGTGGATGCACAGCCCTTTCATCAATGCTACATATGGATCACCAGATGAAGTCCAAGAATATAACGTCACGACAGCATATAAGTTGGCCTTAAAAACATGGGCAAATTGGTTAGAATCAAACATCCAACCACTTACTCAAAATGTATTTTTCATGAGTATGTCTCCAACACATTTGTGGAGCTGGGAATGGAAGCCAGGAAGTGATGAAAACTGCTTCAATGAATCATACCCAATACAAGGTTCGTCATATTGGGGCACAGGCTCGAATCTTGAGATTATGAAGATATTACATGATTCACTACAAGAACTGAAAATAGATGTCACCCTATTGAACATCACCCAATTATCAGAGTACAGAAAAGATGCTCACACATCAGTTTACGGCGAGCGAAAGGGCAAGCTCCTGACTAAAGAACAGAGATCTAACCCAAAATCTTTTGCTGATTGCATTCACTGGTGTTTACCTGGGGTCCCAGATACATGGAATGAAATCCTATATGCATATCTGTTTAAGAACTATCAAAACTTTTCTTAA
Protein sequence

>Msa1325870

MLSLRSSIDRRIQSIFPIILYSLLIFAVTRLVLDSLKSKQSHVFQLYGMSSGGRNRLPVVVLPEDRIEEGCNVFEGKWVWDNVSYPLYEEESCPYLVKQTTCMKNGRPDSFYTNWRWQPHGCNLPRFDPLKLLHMLRNKRMMFIGDSLQRGQFESMICLVQSVIPEGKKSLQRIPPMKIFRVEEFNASIEYYWAPFMVESISDHATNHTVHKRMVMLDSIAKHGKHWQGVDILVFESYVWWMHSPFINATYGSPDEVQEYNVTTAYKLALKTWANWLESNIQPLTQNVFFMSMSPTHLWSWEWKPGSDENCFNESYPIQGSSYWGTGSNLEIMKILHDSLQELKIDVTLLNITQLSEYRKDAHTSVYGERKGKLLTKEQRSNPKSFADCIHWCLPGVPDTWNEILYAYLFKNYQNFS*