AlfalfaGEDB | Msa1326830

M. sativa cultivar zhongmu-4 / Msa1326830

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141
PFAM: PF03514.17

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1326830	XP_003610571.1	96.104	539	19	1	25	561	6	544	0.0	1085

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1326830	sp\|Q9M0M5\|SCL13_ARATH	61.569	497	176	5	66	559	40	524	0.0	609

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1326830	G7JLR5	96.104	539	19	1	25	561	6	544	0.0	1085

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TFs/TRs:

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Gene ID	Type	Classification
Msa1326830	TF	GRAS

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0858680	Msa1326830	0.818978	1.477945e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1326830	MtrunA17_Chr4g0076091	96.104	539	19	1	25	561	6	544	0.0	1085
Msa1326830	MtrunA17_Chr5g0447691	57.570	535	215	6	34	559	12	543	0.0	603
Msa1326830	MtrunA17_Chr2g0290241	66.667	423	138	2	139	561	7	426	0.0	583
Msa1326830	MtrunA17_Chr5g0445331	53.175	504	221	8	68	559	31	531	3.69e-180	518
Msa1326830	MtrunA17_Chr3g0101141	48.168	546	243	8	34	559	16	541	7.63e-175	505
Msa1326830	MtrunA17_Chr2g0319091	49.787	470	183	4	135	559	117	578	1.01e-158	465
Msa1326830	MtrunA17_Chr1g0159461	47.838	370	192	1	190	559	223	591	5.08e-130	392
Msa1326830	MtrunA17_Chr3g0125811	40.514	506	257	9	87	559	75	569	1.32e-126	382
Msa1326830	MtrunA17_Chr7g0224271	36.181	398	223	5	182	561	290	674	7.56e-73	245
Msa1326830	MtrunA17_Chr2g0306641	33.484	442	260	10	130	559	67	486	1.11e-68	230

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1326830	AT4G17230.1	61.368	497	177	5	66	559	40	524	0.0	606
Msa1326830	AT4G17230.2	61.368	497	177	5	66	559	40	524	0.0	606
Msa1326830	AT5G48150.1	54.076	503	208	7	65	559	2	489	0.0	523
Msa1326830	AT5G48150.4	54.076	503	208	7	65	559	2	489	0.0	523
Msa1326830	AT5G48150.2	54.076	503	208	7	65	559	2	489	0.0	523
Msa1326830	AT5G48150.3	54.076	503	208	7	65	559	2	489	0.0	523
Msa1326830	AT1G50600.3	51.091	550	236	9	17	559	2	525	4.73e-175	505
Msa1326830	AT1G50600.2	50.903	554	239	9	13	559	73	600	2.48e-174	506
Msa1326830	AT1G50600.1	50.903	554	239	9	13	559	69	596	2.86e-174	506
Msa1326830	AT2G04890.1	55.961	411	169	4	149	559	14	412	1.50e-159	461

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Find 143 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAATTATATGAATCC+TGG	0.393012	8_4:-41949770	None:intergenic
AAACAGAACTCCACGAGACC+TGG	0.526798	8_4:-41949953	None:intergenic
AAACCGAGAGCAGCTGAATT+TGG	0.309152	8_4:-41948962	None:intergenic
AAAGGGAAAATTTACGGCGA+GGG	0.556638	8_4:-41950046	None:intergenic
AAATAGAGAATTCATTGCTG+GGG	0.674391	8_4:+41949305	Msa1326830:CDS
AAATCGCACAGGGAACACAA+TGG	0.711979	8_4:+41949794	Msa1326830:CDS
AACCAGACATTGCAGCGCTG+TGG	0.666708	8_4:-41949981	None:intergenic
AACGACTTTCAAACTTTGCC+AGG	0.417891	8_4:+41949935	Msa1326830:CDS
AAGCAAAGCTACAGACAGAC+AGG	0.571601	8_4:+41947920	Msa1326830:CDS
AAGCAATGGCAAATGAATCC+AGG	0.513079	8_4:+41949752	Msa1326830:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACAACAAATATCACATGGT+TGG	-	chr8_4:41947280-41947299	None:intergenic	30.0%
TAAGTATTTAAAGAACGTCC+CGG	+	chr8_4:41947329-41947348	Msa1326830:intron	30.0%
AGAAAATAGGTCAGTTATTC+CGG	-	chr8_4:41947351-41947370	None:intergenic	30.0%
TGTATAAATAAAGGGGAAAG+TGG	-	chr8_4:41947490-41947509	None:intergenic	30.0%
CCAAAGTATGTCAATTAAAC+CGG	+	chr8_4:41947533-41947552	Msa1326830:intron	30.0%
CAAAGTATGTCAATTAAACC+GGG	+	chr8_4:41947534-41947553	Msa1326830:intron	30.0%
AGCTATAGTCTACGTATAAT+AGG	-	chr8_4:41947739-41947758	None:intergenic	30.0%
ATAGTTCTTAGGTGAGATTT+AGG	+	chr8_4:41947826-41947845	Msa1326830:intron	30.0%
TGAAAATTCATCATCAGGTA+AGG	-	chr8_4:41948178-41948197	None:intergenic	30.0%
CAAAATCTGAATTCCAATTG+AGG	-	chr8_4:41948300-41948319	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	41946977	41950569	41946977	ID=Msa1326830;Name=Msa1326830
chr8_4	mRNA	41946977	41950569	41946977	ID=Msa1326830-mRNA-1;Parent=Msa1326830;Name=Msa1326830-mRNA-1;_AED=0.12;_eAED=0.13;_QI=0\|0\|0\|0.5\|1\|1\|4\|0\|561
chr8_4	exon	41946977	41946980	41946977	ID=Msa1326830-mRNA-1:exon:12210;Parent=Msa1326830-mRNA-1
chr8_4	exon	41947880	41947941	41947880	ID=Msa1326830-mRNA-1:exon:12211;Parent=Msa1326830-mRNA-1
chr8_4	exon	41948252	41948257	41948252	ID=Msa1326830-mRNA-1:exon:12212;Parent=Msa1326830-mRNA-1
chr8_4	exon	41948956	41950569	41948956	ID=Msa1326830-mRNA-1:exon:12213;Parent=Msa1326830-mRNA-1
chr8_4	CDS	41946977	41946980	41946977	ID=Msa1326830-mRNA-1:cds;Parent=Msa1326830-mRNA-1
chr8_4	CDS	41947880	41947941	41947880	ID=Msa1326830-mRNA-1:cds;Parent=Msa1326830-mRNA-1
chr8_4	CDS	41948252	41948257	41948252	ID=Msa1326830-mRNA-1:cds;Parent=Msa1326830-mRNA-1
chr8_4	CDS	41948956	41950569	41948956	ID=Msa1326830-mRNA-1:cds;Parent=Msa1326830-mRNA-1

Gene Sequence

>Msa1326830

ATGGAAGCAACCACCACCAATCCAGTTTCTAACTCAAACACACCAAGCAAAGCTACAGACAGACAGAGAATACAAAGGCCAAATTCAGCTGCTCTCGGTTTCTATCACCAACCTGCTCAGGGCATTTACCTACAAACCAATCTATGTGCTGGTGGTAGCAGCAGCCAGGGAACTGATCTTTCTTTCGAAACCTACAAGCAGCAACGCTTCACCCTGGAATCATACCCAGAAATCACCGGTTTCATAGACTGTGATTCTCCTTCCTATGCCAGTGTATCATCTAACAAGACTCCATTTTCTCCACAAGAGTCTCAATCATGCCACTCAGATCACCACCAATCATCTGACAACACCTATGGATCCCCGTTAAGCGGTATGTCCAGTGTTGACGATGGGAATGATTTGAAGCACAAACTTAGAGAAATAGAGAATTCATTGCTGGGGCCTGAGGATTTTGATATTGTTGACAGTTACGGCAGCTGCATGGAGACTAGCCTCCACGGAGCATCTCCATCAGCTAAATATAATTGGGATCTGATTGCCGAAAACATTTCAAAGCTTGACATGAAGGAAGTCCTCTTGCTGTGTGCACAAGCTGTCTATGATGGTGATATTCCAACAGCAAGAGGCTGGATGGATAATGTATTGGTGAAGATGGTATCGGTTGCTGGAGATCCAATCCAGAGGTTAAGTGCTTACTTGTTGGAAGGGCTTAGAGCAAGATTAGAATCGTCCGGAAGCTTGATCTACAAGTCGTTGAAATGTGAACAACCAACGAGCAAAGAGCTAATGACTTACATGCACATGCTGTATCAGATTTGTCCATATTTTAAGTTTGCATACATATCTGCAAATGCTGTTATTTTTGAAGCAATGGCAAATGAATCCAGGATTCATATAATTGATTTTCAAATCGCACAGGGAACACAATGGCAAATGCTTATTGAAGCGCTTGCACGCAGGCCCGGTGGACCACCTTTTATTCGAATAACAGGGGTCGATGATTCACAATCATTTCATGCACGCGGTGGAGGACTTCAGATTGTAGGAGAACGACTTTCAAACTTTGCCAGGTCTCGTGGAGTTCTGTTTGAGTTCCACAGCGCTGCAATGTCTGGTTGCGAAGTTCAACGAGAAAATCTTAGAGTTAGTCCTGGAGAAGCCCTCGCCGTAAATTTTCCCTTTAGTTTGCACCATATGCCGGATGAGAGTGTAAGCATAGAGAATCATAGAGACAGATTGTTGAGATTGGTTAAGAGTTTGTCGCCAAAGGTTGTTACCCTTGTTGAGCAAGAATCCAACACCAATACTTCTCCTTTCTTTCAAAGGTTTGTGGAGACAATGGATTTTTACACGGCTATGTTTGAATCAATAGATGTTGCTTGCGCCAAAGACGATAAGAAGCGGATTAGTGCAGAGCAGAACTGCGTGGCCCGGGACATCGTCAACATGATAGCCTGTGAGGGAGTTGAGAGGGTGGAGAGGCATGAAGTTTTTGGAAAGTGGAGGTCGAGATTTTCCATGGCAGGATTTAGACAATGCCAATTGAGTTCTTCAGTGATGCATTCTGTCCAAAATATGTTGAAGGACTTCCATCAAAATTATAGGCTTGAACATAGAGATGGTGCTCTCTATCTTGGTTGGATGAAGAGAGCTATGGCCACCTCTTCTGCTTGGACGTGTTAG

Protein sequence

>Msa1326830

MEATTTNPVSNSNTPSKATDRQRIQRPNSAALGFYHQPAQGIYLQTNLCAGGSSSQGTDLSFETYKQQRFTLESYPEITGFIDCDSPSYASVSSNKTPFSPQESQSCHSDHHQSSDNTYGSPLSGMSSVDDGNDLKHKLREIENSLLGPEDFDIVDSYGSCMETSLHGASPSAKYNWDLIAENISKLDMKEVLLLCAQAVYDGDIPTARGWMDNVLVKMVSVAGDPIQRLSAYLLEGLRARLESSGSLIYKSLKCEQPTSKELMTYMHMLYQICPYFKFAYISANAVIFEAMANESRIHIIDFQIAQGTQWQMLIEALARRPGGPPFIRITGVDDSQSFHARGGGLQIVGERLSNFARSRGVLFEFHSAAMSGCEVQRENLRVSPGEALAVNFPFSLHHMPDESVSIENHRDRLLRLVKSLSPKVVTLVEQESNTNTSPFFQRFVETMDFYTAMFESIDVACAKDDKKRISAEQNCVARDIVNMIACEGVERVERHEVFGKWRSRFSMAGFRQCQLSSSVMHSVQNMLKDFHQNYRLEHRDGALYLGWMKRAMATSSAWTC*