AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0858680

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0858680 MtrunA17_Chr5g0437251 97.950 683 14 0 6 688 1 683 0.0 1387
Msa0858680 MtrunA17_Chr5g0430211 48.615 722 312 14 6 687 1 703 0.0 642
Msa0858680 MtrunA17_Chr1g0187591 44.300 693 290 17 6 648 1 647 9.17e-175 514
Msa0858680 MtrunA17_Chr7g0257831 43.054 727 299 22 35 688 47 731 1.67e-167 498
Msa0858680 MtrunA17_Chr3g0113651 62.250 400 86 7 21 419 1 336 2.46e-165 484
Msa0858680 MtrunA17_Chr3g0113651 51.452 241 89 9 444 679 298 515 1.96e-53 192
Msa0858680 MtrunA17_Chr3g0088521 40.496 726 317 22 33 683 43 728 7.70e-146 442
Msa0858680 MtrunA17_Chr3g0105131 40.665 632 237 19 6 629 1 502 8.02e-123 375
Msa0858680 MtrunA17_Chr3g0105101 44.118 476 157 12 38 506 28 401 1.46e-115 352
Msa0858680 MtrunA17_Chr1g0171151 37.452 526 254 13 35 514 31 527 1.93e-103 328
Msa0858680 MtrunA17_Chr3g0092171 42.417 422 193 9 6 401 52 449 1.80e-94 301
Msa0858680 MtrunA17_Chr3g0092221 46.048 291 119 6 138 403 51 328 9.63e-75 246
Msa0858680 MtrunA17_Chr3g0105141 68.217 129 40 1 201 328 15 143 5.27e-61 201
Msa0858680 MtrunA17_Chr3g0105121 36.066 427 191 15 221 643 8 356 1.06e-58 202
Msa0858680 MtrunA17_Chr8g0389561 48.826 213 100 4 218 425 77 285 1.66e-54 191
Msa0858680 MtrunA17_Chr6g0487481 68.519 108 34 0 217 324 98 205 1.96e-51 182
Msa0858680 MtrunA17_Chr3g0135351 52.795 161 61 3 212 371 43 189 5.35e-49 173
Msa0858680 MtrunA17_Chr2g0324781 64.865 111 37 1 222 330 77 187 7.99e-48 174
Msa0858680 MtrunA17_Chr4g0040391 60.748 107 42 0 218 324 56 162 6.77e-46 166
Msa0858680 MtrunA17_Chr3g0105151 31.295 278 114 10 384 645 1 217 1.12e-23 100
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0858680 AT2G40140.2 51.076 697 226 21 6 688 1 596 0.0 600
Msa0858680 AT2G40140.1 51.076 697 226 21 6 688 1 596 0.0 600
Msa0858680 AT5G58620.1 49.777 673 244 16 33 688 12 607 0.0 590
Msa0858680 AT3G55980.1 50.000 690 228 16 6 688 1 580 0.0 580
Msa0858680 AT3G55980.2 60.766 418 146 6 5 418 67 470 6.34e-169 499
Msa0858680 AT3G55980.2 45.455 187 68 6 503 688 494 647 4.57e-28 120
Msa0858680 AT2G41900.1 40.252 713 320 19 35 688 48 713 3.77e-142 432
Msa0858680 AT5G12850.1 40.331 724 308 25 30 683 37 706 2.71e-141 430
Msa0858680 AT5G07500.1 62.698 126 47 0 199 324 29 154 4.57e-55 189
Msa0858680 AT4G29190.1 46.256 227 110 4 200 425 58 273 1.15e-54 191
Msa0858680 AT2G25900.2 68.224 107 34 0 218 324 86 192 4.57e-51 180
Msa0858680 AT2G25900.1 68.224 107 34 0 218 324 86 192 4.57e-51 180
Msa0858680 AT2G19810.1 63.559 118 43 0 207 324 63 180 1.33e-50 180
Msa0858680 AT1G03790.1 55.263 152 54 3 218 365 78 219 9.90e-49 176
Msa0858680 AT5G44260.1 62.963 108 39 1 218 324 56 163 4.12e-44 163

Find 216 sgRNAs with CRISPR-Local

Find 484 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CGCGAAGGTGGTTCATGTTT+TGG 0.196801 5_4:+56293623 None:intergenic
CTGAGGAAATCCGCTTCTTT+TGG 0.197101 5_4:-56293319 Msa0858680:CDS
CTGCCACATGTTTCCACTCT+TGG 0.215837 5_4:+56294011 None:intergenic
AGTTGGAAATCTTCAAATTC+TGG 0.230477 5_4:+56292929 None:intergenic
ACTCGCAAGAATCCCCTTTC+TGG 0.236566 5_4:+56294319 None:intergenic
CTTATGATTGCTTCCTTGTT+TGG 0.250098 5_4:-56294903 Msa0858680:CDS
GACATAAACAACGGTGTATA+TGG 0.256569 5_4:-56294513 Msa0858680:CDS
CGATTTGGACAACGAATTAA+AGG 0.268967 5_4:+56294671 None:intergenic
TGTAGTTGAGATAGTAAATT+AGG 0.275386 5_4:+56293730 None:intergenic
ATCTGTTGTGTGGGTGTTGA+TGG 0.282762 5_4:+56293691 None:intergenic
GCAGCCATGTCAAAGCTTCT+TGG 0.294352 5_4:-56293070 Msa0858680:three_prime_UTR
GTCGTCCGGCCTTTCAGATT+GGG 0.298046 5_4:-56293395 Msa0858680:CDS
TACACAGGGCGCAGCTCTTC+GGG 0.300339 5_4:+56294189 None:intergenic
TGTCGTCCGGCCTTTCAGAT+TGG 0.305721 5_4:-56293396 Msa0858680:CDS
GCTCTTCATTGTGCTGTTGC+TGG 0.308167 5_4:-56294801 Msa0858680:CDS
GTCGAGTATATTCTTTCAAC+AGG 0.311785 5_4:-56294867 Msa0858680:CDS
CAACACCTTCCTACGCGATT+TGG 0.321673 5_4:+56294656 None:intergenic
CGGAGTTTGTGGTTCCGATA+TGG 0.322011 5_4:-56294829 Msa0858680:CDS
CACGACCCCTTGCGAAACTC+TGG 0.328143 5_4:+56294342 None:intergenic
TTGGGTTAATTCATTGGTTA+AGG 0.328824 5_4:-56293236 Msa0858680:CDS
TCTGAGAATTCCGGCGTATA+TGG 0.334049 5_4:-56293205 Msa0858680:CDS
TGCCACATGTTTCCACTCTT+GGG 0.340074 5_4:+56294012 None:intergenic
CAGCTGCAGTGATGAATTCT+AGG 0.343853 5_4:-56293519 Msa0858680:CDS
AGAAGTAGATGAGAAGGGTT+TGG 0.348805 5_4:-56295000 Msa0858680:CDS
TTTGGCCCATGTTCATGTTT+TGG 0.358068 5_4:+56293641 None:intergenic
CGCCTTCCAACCCTTCCTGC+AGG 0.359580 5_4:-56293420 Msa0858680:CDS
TGTCTCTTGGGTTAATTCAT+TGG 0.367834 5_4:-56293242 Msa0858680:CDS
ATACACAGGGCGCAGCTCTT+CGG 0.370872 5_4:+56294188 None:intergenic
TATATGGATCAGATGAGTTT+AGG 0.370932 5_4:-56294497 Msa0858680:CDS
GGAATGACTTGGAGAAATAT+TGG 0.372737 5_4:-56292895 Msa0858680:three_prime_UTR
ATTTGAATGAAGAAGGCTTT+TGG 0.383843 5_4:-56294977 Msa0858680:CDS
CTCCTCCTTGCATTCTCACC+TGG 0.394967 5_4:+56294402 None:intergenic
AGAGTCAAAGAACAAAGTTC+AGG 0.399316 5_4:-56292960 Msa0858680:three_prime_UTR
CCCCACTGGGAAACTCGATT+GGG 0.408358 5_4:-56293368 Msa0858680:CDS
ATTTCCAACTTCACTAGATC+AGG 0.410017 5_4:-56292916 Msa0858680:three_prime_UTR
TTCTGTTGAATTCGCTGTTA+CGG 0.410177 5_4:+56293803 None:intergenic
GTCAATTCCACTAGCTGAAT+AGG 0.414997 5_4:+56294131 None:intergenic
GAGGAAGGCATATTGTTTGA+TGG 0.415999 5_4:+56293592 None:intergenic
TGGGATGCAGTTGGTGCTGC+TGG 0.418675 5_4:+56293280 None:intergenic
GTCAAGCTCTTGCTTGATGC+CGG 0.418825 5_4:-56294753 Msa0858680:CDS
TATGGTGAGGGCTTCCTCAC+TGG 0.419808 5_4:+56293568 None:intergenic
CGTCCTTGCAAAGCCTTGTT+CGG 0.424614 5_4:+56294253 None:intergenic
CAGCTGTAAGGGTATTTCCT+TGG 0.426047 5_4:+56294375 None:intergenic
ATTGATGTCAACGGAGTTTG+TGG 0.428144 5_4:-56294840 Msa0858680:CDS
TAAATAAATAAAACTTTGTC+AGG 0.428192 5_4:+56293043 None:intergenic
TCGGGCAACGATATATCAAT+AGG 0.428410 5_4:+56294534 None:intergenic
AAGAGGTCATCAAGGTTAGT+TGG 0.431942 5_4:+56293766 None:intergenic
GTGAGGAAGCCCTCACCATA+TGG 0.432783 5_4:-56293565 Msa0858680:CDS
GCACTCTTCAAACGGCTACC+TGG 0.432870 5_4:+56293952 None:intergenic
CGCCCTGTGTATGCCTCCAC+TGG 0.433195 5_4:-56294177 Msa0858680:CDS
GATGTTCCATCTGAGAATTC+CGG 0.433513 5_4:-56293214 Msa0858680:CDS
AGACATCGGGCTCGGTATGT+TGG 0.435368 5_4:+56293260 None:intergenic
CATTCCTGATCTAGTGAAGT+TGG 0.437959 5_4:+56292912 None:intergenic
CTGCAGCTGCCACATATTCT+CGG 0.440606 5_4:+56293180 None:intergenic
AGCTGTAAGGGTATTTCCTT+GGG 0.442755 5_4:+56294376 None:intergenic
CCACTAGCTGAATAGGACTT+TGG 0.443786 5_4:+56294138 None:intergenic
GACATCGGGCTCGGTATGTT+GGG 0.444418 5_4:+56293261 None:intergenic
CCCCTTGCGAAACTCTGGGC+AGG 0.444998 5_4:+56294347 None:intergenic
AATTCGCTGTTACGGAAAGA+TGG 0.453909 5_4:+56293811 None:intergenic
GGGCAGGGAACACAGCTGTA+AGG 0.457289 5_4:+56294363 None:intergenic
GTTTAGGATGTACAGTTTCA+AGG 0.458638 5_4:-56294481 Msa0858680:CDS
TATACACCGTTGTTTATGTC+GGG 0.462321 5_4:+56294516 None:intergenic
GGTTTGGATTTGAATGAAGA+AGG 0.464213 5_4:-56294984 Msa0858680:CDS
TACCGAGCCCGATGTCTCTT+GGG 0.465711 5_4:-56293254 Msa0858680:CDS
CACTCAAAGCACTCTTCAAA+CGG 0.468740 5_4:+56293944 None:intergenic
TGAGATGGAATTGCTCGGTC+TGG 0.469920 5_4:-56293905 Msa0858680:CDS
ATACCGAGCCCGATGTCTCT+TGG 0.470119 5_4:-56293255 Msa0858680:CDS
GGCTTCCTCACTGGAGAGGA+AGG 0.472160 5_4:+56293577 None:intergenic
CTACCTGGGAGCTGCAACGA+TGG 0.472506 5_4:+56293967 None:intergenic
CAAGAGAGAAGTAGATGAGA+AGG 0.474046 5_4:-56295006 Msa0858680:CDS
TGGCGCATCTGCATTGCACT+TGG 0.475619 5_4:+56293661 None:intergenic
TTCTCACCTGGATGAACAAA+GGG 0.476487 5_4:+56294414 None:intergenic
TTGGCTGCGCTGCTTTGCGA+AGG 0.476576 5_4:+56293489 None:intergenic
AAGAGAGAAGTAGATGAGAA+GGG 0.478152 5_4:-56295005 Msa0858680:CDS
AACAAGGAAGCAATCATAAG+AGG 0.482396 5_4:+56294906 None:intergenic
CATGGAGGATAAGCTTCAAA+AGG 0.484482 5_4:-56295087 Msa0858680:CDS
GCTGGCGCAATCAGATCAAC+CGG 0.486158 5_4:+56294693 None:intergenic
CACTCTTCAAACGGCTACCT+GGG 0.486258 5_4:+56293953 None:intergenic
AGGCTTTGCAAGGACGAGAC+TGG 0.489002 5_4:-56294246 Msa0858680:CDS
CACCACGGTCAATGAAACTT+TGG 0.491260 5_4:+56293470 None:intergenic
GCAAGGGGTCGTGCCAGAAA+GGG 0.492458 5_4:-56294332 Msa0858680:CDS
ACTATACTATATGTAAATGT+TGG 0.493494 5_4:+56292984 None:intergenic
GGTGCTGCAACTCACCATCT+TGG 0.497686 5_4:-56293451 Msa0858680:CDS
CCTTCCTGCAGGGTGTCGTC+CGG 0.501860 5_4:-56293409 Msa0858680:CDS
AACACCACCCATGTCTCCCT+TGG 0.506352 5_4:-56294049 Msa0858680:CDS
AAACTCGATTGGGGTGTAAA+CGG 0.506355 5_4:-56293358 Msa0858680:CDS
ATGAAGAGCAGTGGCCATAT+CGG 0.506470 5_4:+56294815 None:intergenic
TGTGGGTGTTGATGGTTGCA+TGG 0.506859 5_4:+56293699 None:intergenic
AACCCAAGAGACATCGGGCT+CGG 0.507762 5_4:+56293252 None:intergenic
CACTCTAGTGCTTCCAAACA+AGG 0.508719 5_4:+56294890 None:intergenic
TGAAGAGTGCTTTGAGTGCA+AGG 0.510749 5_4:-56293939 Msa0858680:CDS
CTTCATTGTGCTGTTGCTGG+TGG 0.512690 5_4:-56294798 Msa0858680:CDS
TCGTCCGGCCTTTCAGATTG+GGG 0.513214 5_4:-56293394 Msa0858680:CDS
AGCCTTGTTCGGTATTGTGC+GGG 0.515045 5_4:+56294264 None:intergenic
GCCTTCCAACCCTTCCTGCA+GGG 0.517193 5_4:-56293419 Msa0858680:CDS
TTGTACATCTGCTCCACCCA+TGG 0.518688 5_4:+56293127 None:intergenic
TGATGCTAGTGGAAACAAAC+CGG 0.520501 5_4:-56294712 Msa0858680:CDS
CCCTGCCCAGAGTTTCGCAA+GGG 0.522429 5_4:-56294348 Msa0858680:CDS
TCGAGACGTGCTTCCACCAT+GGG 0.522786 5_4:-56293143 Msa0858680:CDS
TTCATCCAGGTGAGAATGCA+AGG 0.523324 5_4:-56294407 Msa0858680:CDS
ATTCGCTGTTACGGAAAGAT+GGG 0.523731 5_4:+56293812 None:intergenic
TCCCTGCCCAGAGTTTCGCA+AGG 0.526817 5_4:-56294349 Msa0858680:CDS
GGAACCCCAATCTGAAAGGC+CGG 0.526956 5_4:+56293390 None:intergenic
AAGAATTGGATCGAAGAAGA+TGG 0.527469 5_4:-56294946 Msa0858680:CDS
CGACACCCTGCAGGAAGGGT+TGG 0.530365 5_4:+56293414 None:intergenic
TCGGTATGTTGGGATGCAGT+TGG 0.533279 5_4:+56293271 None:intergenic
GTACAAAGAGCAGGAGCAGA+TGG 0.534247 5_4:-56293110 Msa0858680:CDS
CCACCATCGTTGCAGCTCCC+AGG 0.534409 5_4:-56293970 Msa0858680:CDS
GGAGCAGATGTACAAAGAGC+AGG 0.537466 5_4:-56293119 Msa0858680:CDS
ACGACCCCTTGCGAAACTCT+GGG 0.538237 5_4:+56294343 None:intergenic
CGGACGACACCCTGCAGGAA+GGG 0.538863 5_4:+56293410 None:intergenic
CCAAAGTCCTATTCAGCTAG+TGG 0.541639 5_4:-56294138 Msa0858680:CDS
TTCACAATAATGGATAATCA+TGG 0.542018 5_4:+56292701 None:intergenic
GAGTGTCCCTTTGTTCATCC+AGG 0.543113 5_4:-56294420 Msa0858680:CDS
TGAATTAACCCAAGAGACAT+CGG 0.547817 5_4:+56293246 None:intergenic
ATTTCTGAACCCAAAAGAAG+CGG 0.548536 5_4:+56293309 None:intergenic
GTTGTCCAAATCGCGTAGGA+AGG 0.549554 5_4:-56294661 Msa0858680:CDS
GAATTAACCCAAGAGACATC+GGG 0.551012 5_4:+56293247 None:intergenic
TATATGGTGCCGAGAATATG+TGG 0.551072 5_4:-56293189 Msa0858680:CDS
ATTGACCCACTAAAGAAAAG+AGG 0.552979 5_4:+56292824 None:intergenic
GGGAGATGATGAACCTGCCA+AGG 0.553827 5_4:+56294032 None:intergenic
AGAAGATGGAATCTGAAAAG+AGG 0.553960 5_4:-56294932 Msa0858680:CDS
CGAGGGCTTACTCTCACGAT+TGG 0.553989 5_4:-56294446 Msa0858680:CDS
ACCCTGCAGGAAGGGTTGGA+AGG 0.554901 5_4:+56293418 None:intergenic
TTGGACAACGAATTAAAGGC+TGG 0.557548 5_4:+56294675 None:intergenic
TGGAGAGTGCATCTGTTGTG+TGG 0.558672 5_4:+56293681 None:intergenic
GGCAGGGAACACAGCTGTAA+GGG 0.559340 5_4:+56294364 None:intergenic
ATATACACCGTTGTTTATGT+CGG 0.561652 5_4:+56294515 None:intergenic
GCTGATGAATCAAATCCATA+TGG 0.562833 5_4:+56293550 None:intergenic
AAGCCTTGTTCGGTATTGTG+CGG 0.563056 5_4:+56294263 None:intergenic
TTCTTCATCAGACTGTGCCA+TGG 0.563892 5_4:-56295105 Msa0858680:CDS
GAACCAGTGGAGGCATACAC+AGG 0.565086 5_4:+56294174 None:intergenic
CATCACTGCAGCTGCTACTG+CGG 0.565349 5_4:+56293528 None:intergenic
AAGGCCGGACGACACCCTGC+AGG 0.568796 5_4:+56293405 None:intergenic
TTGACCCACTAAAGAAAAGA+GGG 0.570494 5_4:+56292825 None:intergenic
GATCTTGAGATGGAATTGCT+CGG 0.572830 5_4:-56293910 Msa0858680:CDS
CCTGGGAGCTGCAACGATGG+TGG 0.572925 5_4:+56293970 None:intergenic
GATGCGCCAAAACATGAACA+TGG 0.573046 5_4:-56293647 Msa0858680:CDS
AGACGTGCTTCCACCATGGG+TGG 0.573955 5_4:-56293140 Msa0858680:CDS
CTTGTTTGGAAGCACTAGAG+TGG 0.576155 5_4:-56294889 Msa0858680:CDS
CCCTTGCGAAACTCTGGGCA+GGG 0.576535 5_4:+56294348 None:intergenic
TGAACCTGCCAAGGGAGACA+TGG 0.576779 5_4:+56294041 None:intergenic
AGACAATTCAAGCAAGATTG+AGG 0.577524 5_4:+56295052 None:intergenic
ATGGAGGATAAGCTTCAAAA+GGG 0.579380 5_4:-56295086 Msa0858680:CDS
ATCCCGCACAATACCGAACA+AGG 0.579739 5_4:-56294266 Msa0858680:CDS
AAGACAATCAGCATCTGCAC+CGG 0.580324 5_4:+56294734 None:intergenic
GTCGAGACGTGCTTCCACCA+TGG 0.580527 5_4:-56293144 Msa0858680:CDS
TGAGAGTAAGCCCTCGAGCA+TGG 0.580982 5_4:+56294453 None:intergenic
GGAGAGTGCATCTGTTGTGT+GGG 0.581542 5_4:+56293682 None:intergenic
TCACTAGATCAGGAATGACT+TGG 0.581956 5_4:-56292906 Msa0858680:three_prime_UTR
ATGGATAACTTGCGCGAAGG+TGG 0.584205 5_4:+56293611 None:intergenic
AAGGAGCGTCCATCTCCCCT+TGG 0.584326 5_4:+56294595 None:intergenic
TGAACTCATCCAAGGGGAGA+TGG 0.584869 5_4:-56294604 Msa0858680:CDS
CAAATCGCGTAGGAAGGTGT+TGG 0.585250 5_4:-56294655 Msa0858680:CDS
GCTGATTGTCTTGATGCTAG+TGG 0.585414 5_4:-56294723 Msa0858680:CDS
CCGGACGACACCCTGCAGGA+AGG 0.586791 5_4:+56293409 None:intergenic
TGCTGCTGCTGTTGACGACG+AGG 0.589656 5_4:+56293877 None:intergenic
GAAGAGTGCTTTGAGTGCAA+GGG 0.591839 5_4:-56293938 Msa0858680:CDS
AATTTACTATCTCAACTACA+TGG 0.592297 5_4:-56293727 Msa0858680:CDS
CAAGGGGTCGTGCCAGAAAG+GGG 0.599774 5_4:-56294331 Msa0858680:CDS
ATACCGAACAAGGCTTTGCA+AGG 0.600596 5_4:-56294256 Msa0858680:CDS
TAGGATCAGCTGATGCTAAG+AGG 0.602013 5_4:+56293749 None:intergenic
CAAGGTGAAGCCATGCTCGA+GGG 0.603335 5_4:-56294463 Msa0858680:CDS
TCAAGGTGAAGCCATGCTCG+AGG 0.606783 5_4:-56294464 Msa0858680:CDS
GAATCAAATCCATATGGTGA+GGG 0.607337 5_4:+56293556 None:intergenic
AGGATTTGGATTATGTGCAG+TGG 0.608930 5_4:-56295143 Msa0858680:CDS
GTAAGTGCTGAACTCATCCA+AGG 0.609847 5_4:-56294612 Msa0858680:CDS
CCTGCCCAGAGTTTCGCAAG+GGG 0.612209 5_4:-56294347 Msa0858680:CDS
ATTCTCACCTGGATGAACAA+AGG 0.616516 5_4:+56294413 None:intergenic
TGGATGAACAAAGGGACACT+CGG 0.617153 5_4:+56294422 None:intergenic
GGTTCATCATCTCCCAAGAG+TGG 0.617657 5_4:-56294024 Msa0858680:CDS
CTGCAGGAAGGGTTGGAAGG+CGG 0.621056 5_4:+56293421 None:intergenic
GGTGTTGAAACAGTTGACAT+AGG 0.621294 5_4:+56294066 None:intergenic
ATTCGTTGTCCAAATCGCGT+AGG 0.621353 5_4:-56294665 Msa0858680:CDS
CTGATGCTAAGAGGTCATCA+AGG 0.625709 5_4:+56293758 None:intergenic
TGAATCAAATCCATATGGTG+AGG 0.627563 5_4:+56293555 None:intergenic
GCTGAATAGGACTTTGGTGA+AGG 0.628923 5_4:+56294144 None:intergenic
AGGCATAGCTGAACCAGTGG+AGG 0.631941 5_4:+56294164 None:intergenic
CCCACTGGGAAACTCGATTG+GGG 0.632471 5_4:-56293367 Msa0858680:CDS
TACATCTGCTCCACCCATGG+TGG 0.632978 5_4:+56293130 None:intergenic
ATGCAAGGAGGAGAGACCCA+AGG 0.635278 5_4:-56294392 Msa0858680:CDS
GGAGATGATGAACCTGCCAA+GGG 0.637245 5_4:+56294033 None:intergenic
GAACCTGCCAAGGGAGACAT+GGG 0.638207 5_4:+56294042 None:intergenic
AGCCAAAGTTTCATTGACCG+TGG 0.638346 5_4:-56293472 Msa0858680:CDS
TGAGGGCTTCCTCACTGGAG+AGG 0.638650 5_4:+56293573 None:intergenic
TTCATCAGACTGTGCCATGG+AGG 0.642039 5_4:-56295102 Msa0858680:CDS
AACAGCACAATGAAGAGCAG+TGG 0.643629 5_4:+56294806 None:intergenic
TAAGTGCTGAACTCATCCAA+GGG 0.645605 5_4:-56294611 Msa0858680:CDS
AACCAGTGGAGGCATACACA+GGG 0.645864 5_4:+56294175 None:intergenic
CCCCAATCGAGTTTCCCAGT+GGG 0.652420 5_4:+56293367 None:intergenic
GCTGCAACGATGGTGGAGTG+AGG 0.652628 5_4:+56293977 None:intergenic
ACAGGGAAGATTGATGTCAA+CGG 0.653698 5_4:-56294849 Msa0858680:CDS
CCCAATCGAGTTTCCCAGTG+GGG 0.653880 5_4:+56293368 None:intergenic
AAAACCAAGAAGCTTTGACA+TGG 0.654919 5_4:+56293066 None:intergenic
ATGCGCCAAAACATGAACAT+GGG 0.661793 5_4:-56293646 Msa0858680:CDS
CCAATCGAGTTTCCCAGTGG+GGG 0.662085 5_4:+56293369 None:intergenic
CTCCCAAGAGTGGAAACATG+TGG 0.663242 5_4:-56294014 Msa0858680:CDS
AAGGGATCTCGATCTTGAGA+TGG 0.663328 5_4:-56293920 Msa0858680:CDS
TGAAGGCATAGCTGAACCAG+TGG 0.664738 5_4:+56294161 None:intergenic
GCTGTTACGGAAAGATGGGG+AGG 0.665128 5_4:+56293816 None:intergenic
ACCCCAATCGAGTTTCCCAG+TGG 0.665168 5_4:+56293366 None:intergenic
AAGGCGGAGAAAGTCCAAGA+TGG 0.665195 5_4:+56293437 None:intergenic
GATTCTTGCGAGTATGCACA+TGG 0.665419 5_4:-56294309 Msa0858680:CDS
TTCGCTGTTACGGAAAGATG+GGG 0.672071 5_4:+56293813 None:intergenic
GTGACGAGCTGAACAAGCTG+AGG 0.679618 5_4:-56293336 Msa0858680:CDS
GATGAGGAGCTAAGAGACAA+CGG 0.680167 5_4:+56294093 None:intergenic
GATGGTGAGTTGCAGCACCA+CGG 0.682458 5_4:+56293455 None:intergenic
AGTTGACATAGGCAAAGATG+AGG 0.688585 5_4:+56294077 None:intergenic
TCGAGTATATTCTTTCAACA+GGG 0.693279 5_4:-56294866 Msa0858680:CDS
TTGATGGATAACTTGCGCGA+AGG 0.700054 5_4:+56293608 None:intergenic
ATTCTCGGCACCATATACGC+CGG 0.708842 5_4:+56293195 None:intergenic
AAGTGCTGAACTCATCCAAG+GGG 0.716976 5_4:-56294610 Msa0858680:CDS
ATATGCCTTCCTCTCCAGTG+AGG 0.717918 5_4:-56293582 Msa0858680:CDS
TCGTTGCCCGACATAAACAA+CGG 0.735153 5_4:-56294522 Msa0858680:CDS
CCTGCCAAGGGAGACATGGG+TGG 0.744203 5_4:+56294045 None:intergenic
ATCCAGGTGAGAATGCAAGG+AGG 0.764804 5_4:-56294404 Msa0858680:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AATATATATTAATTTCCAAT+TGG + chr5_4:56292779-56292798 None:intergenic 10.0%
!! AAAATTGTAAAAAAAAAGTT+CGG - chr5_4:56293681-56293700 Msa0858680:CDS 10.0%
!!! TTTAAAATGAAATATAAACA+AGG + chr5_4:56293934-56293953 None:intergenic 10.0%
!!! TTGTATTTATCTTTTTATTT+TGG - chr5_4:56294353-56294372 Msa0858680:CDS 10.0%
!! AAAAAATCTAAAAAAACAAA+TGG + chr5_4:56294587-56294606 None:intergenic 10.0%
!!! ATTTGTTTTTTTAGATTTTT+TGG - chr5_4:56294586-56294605 Msa0858680:CDS 10.0%
!!! TCTTTTTGATATTATTTTAT+TGG - chr5_4:56294669-56294688 Msa0858680:CDS 10.0%
!!! CTTTTTGATATTATTTTATT+GGG - chr5_4:56294670-56294689 Msa0858680:CDS 10.0%
!!! ATAAACTAACTTTTAAAAAT+TGG + chr5_4:56295042-56295061 None:intergenic 10.0%
!!! TAAATATAGTATTTTTTTAG+GGG - chr5_4:56296090-56296109 Msa0858680:intron 10.0%
!!! AAATATCAATTTTATCATAA+AGG - chr5_4:56296179-56296198 Msa0858680:intron 10.0%
!!! AATATCAATTTTATCATAAA+GGG - chr5_4:56296180-56296199 Msa0858680:intron 10.0%
!!! TTTAGTTGAAAATATTTTTA+TGG - chr5_4:56297287-56297306 Msa0858680:intron 10.0%
!! AGGTAAATAAGAAATATATT+TGG - chr5_4:56292825-56292844 Msa0858680:three_prime_UTR 15.0%
!! GAATAAAATATAAGTAAAAG+TGG - chr5_4:56293296-56293315 Msa0858680:CDS 15.0%
!! AAGTAAAAAATTGATGTATA+TGG + chr5_4:56293359-56293378 None:intergenic 15.0%
!! AAATTGTAAAAAAAAAGTTC+GGG - chr5_4:56293682-56293701 Msa0858680:CDS 15.0%
!!! TGTCATTTGAATAAAAATTT+AGG - chr5_4:56294732-56294751 Msa0858680:CDS 15.0%
!! ATTAAAAGAAATTAGTTCAA+CGG + chr5_4:56295274-56295293 None:intergenic 15.0%
!! AGTGCAATTAAATTATATTA+TGG - chr5_4:56295535-56295554 Msa0858680:intron 15.0%
!! TTATATTATGGAATCAAATA+AGG - chr5_4:56295547-56295566 Msa0858680:intron 15.0%
!!! ATTAAATACAGTATTTTTCA+AGG - chr5_4:56296062-56296081 Msa0858680:intron 15.0%
!!! TTAAATACAGTATTTTTCAA+GGG - chr5_4:56296063-56296082 Msa0858680:intron 15.0%
!! AAAATCAATTAGATAAAGAA+AGG - chr5_4:56296274-56296293 Msa0858680:intron 15.0%
!!! TAAAGTTATGTTTTTTTTGT+GGG - chr5_4:56297057-56297076 Msa0858680:intron 15.0%
!!! TTTTTTTTTTGTTTGATCTT+AGG - chr5_4:56297137-56297156 Msa0858680:intron 15.0%
!!! TTTTATGGATCTATTATTTT+TGG - chr5_4:56297302-56297321 Msa0858680:intron 15.0%
!!! TTTATGGATCTATTATTTTT+GGG - chr5_4:56297303-56297322 Msa0858680:intron 15.0%
!! TAAATAAATAAAACTTTGTC+AGG + chr5_4:56299556-56299575 None:intergenic 15.0%
!! TTCAATAATATTCATCAAGA+AGG - chr5_4:56292805-56292824 Msa0858680:three_prime_UTR 20.0%
!! AAATATCTTGATCATTCTTA+AGG - chr5_4:56292850-56292869 Msa0858680:three_prime_UTR 20.0%
!!! TATCAAAGTATAGTTCTTTT+TGG - chr5_4:56292947-56292966 Msa0858680:three_prime_UTR 20.0%
!!! TACTTATCGTTTTTGTTTAT+AGG - chr5_4:56293374-56293393 Msa0858680:CDS 20.0%
!! AATTTCAAAAAAAAAAGCCA+GGG + chr5_4:56293578-56293597 None:intergenic 20.0%
!! AAATTTCAAAAAAAAAAGCC+AGG + chr5_4:56293579-56293598 None:intergenic 20.0%
!!! CTGAAAAAACTGAAATTTTT+CGG - chr5_4:56293654-56293673 Msa0858680:CDS 20.0%
!!! CTGGAAAAAATTTTTTTTGA+AGG - chr5_4:56293711-56293730 Msa0858680:CDS 20.0%
!! ATAGAAATACACATATCAAA+AGG - chr5_4:56294055-56294074 Msa0858680:CDS 20.0%
!!! ACCACTTTCAAAAAAATTTT+GGG + chr5_4:56294183-56294202 None:intergenic 20.0%
!!! AACCACTTTCAAAAAAATTT+TGG + chr5_4:56294184-56294203 None:intergenic 20.0%
!!! ATTTTTTTGAAAGTGGTTAT+TGG - chr5_4:56294186-56294205 Msa0858680:CDS 20.0%
!!! TGGATATGTGTTTATTTTTA+GGG - chr5_4:56294316-56294335 Msa0858680:CDS 20.0%
!! AAAAACAAAAAAAAGGACAA+GGG + chr5_4:56294615-56294634 None:intergenic 20.0%
!! CAAAAGGAAAAACAAAAAAA+AGG + chr5_4:56294622-56294641 None:intergenic 20.0%
!!! TTGATATTATTTTATTGGGT+TGG - chr5_4:56294674-56294693 Msa0858680:CDS 20.0%
!! TACATATTTGTCTTTCAATA+AGG - chr5_4:56295081-56295100 Msa0858680:CDS 20.0%
!! ACATATTTGTCTTTCAATAA+GGG - chr5_4:56295082-56295101 Msa0858680:CDS 20.0%
!! TGATTTATATATCTACTCAA+AGG - chr5_4:56295165-56295184 Msa0858680:intron 20.0%
!! AACATTAAAAGAGTTTAAGA+AGG - chr5_4:56295658-56295677 Msa0858680:intron 20.0%
!! AAACAAACAATTATGATTGA+TGG + chr5_4:56295937-56295956 None:intergenic 20.0%
!! TGAAAATATCATATAATGCT+CGG + chr5_4:56296332-56296351 None:intergenic 20.0%
!! TGAACTTAACTTATTTGATA+TGG - chr5_4:56296425-56296444 Msa0858680:intron 20.0%
!! GACAATATATAATATATCTG+AGG - chr5_4:56296447-56296466 Msa0858680:intron 20.0%
!!! TGAGTGATAAAATTCTTTTT+TGG + chr5_4:56296495-56296514 None:intergenic 20.0%
!!! CTAAAGTTATGTTTTTTTTG+TGG - chr5_4:56297056-56297075 Msa0858680:intron 20.0%
!!! TCTGTTTTTGTTTTAGATTT+AGG - chr5_4:56297193-56297212 Msa0858680:intron 20.0%
!! ACTATACTATATGTAAATGT+TGG + chr5_4:56299615-56299634 None:intergenic 20.0%
! TAATCTATATTAGAGCCAAT+TGG - chr5_4:56292761-56292780 Msa0858680:three_prime_UTR 25.0%
! AAGGAAACTTAGTGTATATT+TGG - chr5_4:56293011-56293030 Msa0858680:three_prime_UTR 25.0%
!!! CAATAGTCAATCCTTATTTT+TGG + chr5_4:56293214-56293233 None:intergenic 25.0%
! ATTGACTATTGTTTGACATT+AGG - chr5_4:56293223-56293242 Msa0858680:CDS 25.0%
! TTAACTGATTAAACTTTGCA+GGG + chr5_4:56293830-56293849 None:intergenic 25.0%
! TTTAACTGATTAAACTTTGC+AGG + chr5_4:56293829-56293848 None:intergenic 25.0%
! ATTTCAAAAAAAAAAGCCAG+GGG + chr5_4:56293577-56293596 None:intergenic 25.0%
! AAGGAAAAAAAAATAAGCCA+GGG - chr5_4:56293730-56293749 Msa0858680:CDS 25.0%
! TTTAACTGATTAAACTTTGC+AGG - chr5_4:56293829-56293848 Msa0858680:CDS 25.0%
! TTAACTGATTAAACTTTGCA+GGG - chr5_4:56293830-56293849 Msa0858680:CDS 25.0%
!! TAAATAGAGCAATTTTGCAT+TGG + chr5_4:56294120-56294139 None:intergenic 25.0%
! AATGCAAAATTGCTCTATTT+AGG - chr5_4:56294119-56294138 Msa0858680:CDS 25.0%
!!! ACCCAAAATTTTTTTGAAAG+TGG - chr5_4:56294179-56294198 Msa0858680:CDS 25.0%
!!! GTGGATATGTGTTTATTTTT+AGG - chr5_4:56294315-56294334 Msa0858680:CDS 25.0%
! GAAAAACAAAAAAAAGGACA+AGG + chr5_4:56294616-56294635 None:intergenic 25.0%
! ATAACAAAAGAAGGAATGAA+GGG + chr5_4:56294795-56294814 None:intergenic 25.0%
! AATAACAAAAGAAGGAATGA+AGG + chr5_4:56294796-56294815 None:intergenic 25.0%
! CATCTTAGAATAACAAAAGA+AGG + chr5_4:56294804-56294823 None:intergenic 25.0%
!!! GTTAGTTTTCTCATTTAGTT+TGG - chr5_4:56294823-56294842 Msa0858680:CDS 25.0%
!!! GTCCTTTTAAATAACTTGTA+CGG - chr5_4:56295333-56295352 Msa0858680:intron 25.0%
! TTATGGAATCAAATAAGGTA+CGG - chr5_4:56295552-56295571 Msa0858680:intron 25.0%
! ATATGTAGTCTAGTGATTAA+AGG - chr5_4:56295630-56295649 Msa0858680:intron 25.0%
! TATGTAGTCTAGTGATTAAA+GGG - chr5_4:56295631-56295650 Msa0858680:intron 25.0%
! ATTAAAAGAGTTTAAGAAGG+AGG - chr5_4:56295661-56295680 Msa0858680:intron 25.0%
! GTTGTTAGTATATATGTTAG+AGG + chr5_4:56295724-56295743 None:intergenic 25.0%
! TGTAATCAAAACCATTCAAA+TGG - chr5_4:56295781-56295800 Msa0858680:intron 25.0%
! AAATGACATATTGAAAGTTG+AGG - chr5_4:56295886-56295905 Msa0858680:intron 25.0%
!!! TTTATTTTTTGACTCGAGAA+AGG - chr5_4:56296032-56296051 Msa0858680:intron 25.0%
!! TCAATTTTATCATAAAGGGT+TGG - chr5_4:56296184-56296203 Msa0858680:intron 25.0%
!! GAATTTTCTCTAGTCAAAAA+AGG - chr5_4:56296227-56296246 Msa0858680:intron 25.0%
! TCAAATGTAAATGTTCATGT+GGG + chr5_4:56296633-56296652 None:intergenic 25.0%
! TTCAAATGTAAATGTTCATG+TGG + chr5_4:56296634-56296653 None:intergenic 25.0%
! GTTTCATTTACATCTCATTT+AGG - chr5_4:56296665-56296684 Msa0858680:intron 25.0%
! TTTCTTTCTTTCTTTCTCTT+TGG + chr5_4:56296769-56296788 None:intergenic 25.0%
! TTCATCTCTACTAATCTAAA+AGG - chr5_4:56296999-56297018 Msa0858680:intron 25.0%
!! ATTGAGCAAAACTATTTTGT+GGG - chr5_4:56297080-56297099 Msa0858680:intron 25.0%
!!! TTTTGTTTTGTAACCATGAT+TGG - chr5_4:56297238-56297257 Msa0858680:intron 25.0%
!!! GTTGTTGTTTTAGATATTGA+TGG - chr5_4:56297338-56297357 Msa0858680:intron 25.0%
! TGTAGTTGAGATAGTAAATT+AGG + chr5_4:56298869-56298888 None:intergenic 25.0%
! AATTTACTATCTCAACTACA+TGG - chr5_4:56298869-56298888 Msa0858680:intron 25.0%
AGGTTTATAATTATGGACAG+TGG - chr5_4:56292715-56292734 Msa0858680:three_prime_UTR 30.0%
GGTTTATAATTATGGACAGT+GGG - chr5_4:56292716-56292735 Msa0858680:three_prime_UTR 30.0%
ACTAACATTGATGCTTAGAT+TGG - chr5_4:56292883-56292902 Msa0858680:three_prime_UTR 30.0%
ATGTGGTCTATCCAAAAATA+AGG - chr5_4:56293200-56293219 Msa0858680:CDS 30.0%
! TGAGGTTATCTTACTCTTTT+TGG - chr5_4:56293274-56293293 Msa0858680:CDS 30.0%
AGTTGAAAAATCAATGCATG+TGG - chr5_4:56293320-56293339 Msa0858680:CDS 30.0%
TAACTGATTAAACTTTGCAG+GGG + chr5_4:56293831-56293850 None:intergenic 30.0%
CAATTTACCAAAAATGGCAT+GGG - chr5_4:56293537-56293556 Msa0858680:CDS 30.0%
AAAAAAGTTCGGGAAAAATC+TGG - chr5_4:56293692-56293711 Msa0858680:CDS 30.0%
GAAGGAAAAAAAAATAAGCC+AGG - chr5_4:56293729-56293748 Msa0858680:CDS 30.0%
AGGAAAAAAAAATAAGCCAG+GGG - chr5_4:56293731-56293750 Msa0858680:CDS 30.0%
CAACTTACCAAAAATGACAT+GGG + chr5_4:56293771-56293790 None:intergenic 30.0%
ACAACTTACCAAAAATGACA+TGG + chr5_4:56293772-56293791 None:intergenic 30.0%
!! TTTTTGGTAAGTTGTTGATG+TGG - chr5_4:56293777-56293796 Msa0858680:CDS 30.0%
TAACTGATTAAACTTTGCAG+GGG - chr5_4:56293831-56293850 Msa0858680:CDS 30.0%
!! TCATTTTAAAAAGAGTGCGA+AGG - chr5_4:56293944-56293963 Msa0858680:CDS 30.0%
!!! TTTTGTTTTTCCTTTTGCCT+AGG - chr5_4:56294625-56294644 Msa0858680:CDS 30.0%
!! TTCTCATTTAGTTTGGTTTG+CGG - chr5_4:56294830-56294849 Msa0858680:CDS 30.0%
GAAATTACTGATGAACTTAG+AGG + chr5_4:56295243-56295262 None:intergenic 30.0%
CTCCGTACAAGTTATTTAAA+AGG + chr5_4:56295338-56295357 None:intergenic 30.0%
ATTCAAATGGTGATCATTGT+GGG - chr5_4:56295794-56295813 Msa0858680:intron 30.0%
!! AAGTGATTAACTTGCATTGA+TGG + chr5_4:56295960-56295979 None:intergenic 30.0%
TCAAATAAGTTAAGTTCACG+AGG + chr5_4:56296423-56296442 None:intergenic 30.0%
AGTCAATTATTCAATGCTAG+TGG + chr5_4:56296742-56296761 None:intergenic 30.0%
AGAGAAAGAAAGAAAGAAAG+AGG - chr5_4:56296770-56296789 Msa0858680:intron 30.0%
AAAGAAAGAAAGAAAGAGGA+AGG - chr5_4:56296774-56296793 Msa0858680:intron 30.0%
!! GAAAGGGGTTTTTATTTGTA+AGG + chr5_4:56296852-56296871 None:intergenic 30.0%
TGAGAGAGTAATGAAGAAAA+TGG + chr5_4:56296928-56296947 None:intergenic 30.0%
!! TTTGTTGTTGTTGTTGATGT+TGG + chr5_4:56296954-56296973 None:intergenic 30.0%
! GATTGAGCAAAACTATTTTG+TGG - chr5_4:56297079-56297098 Msa0858680:intron 30.0%
!!! TGATCTTAGGTTGTTTTTGA+TGG - chr5_4:56297150-56297169 Msa0858680:intron 30.0%
!!! GATCTTAGGTTGTTTTTGAT+GGG - chr5_4:56297151-56297170 Msa0858680:intron 30.0%
!!! TTTGTAACCATGATTGGTTT+TGG - chr5_4:56297244-56297263 Msa0858680:intron 30.0%
TAGTATTCCAAAACCAATCA+TGG + chr5_4:56297254-56297273 None:intergenic 30.0%
!!! TGATTGGTTTTGGAATACTA+AGG - chr5_4:56297254-56297273 Msa0858680:intron 30.0%
!!! TATTTTTGGGATTTGAAGCA+AGG - chr5_4:56297316-56297335 Msa0858680:intron 30.0%
ATTTAATATTCACACAGCAC+AGG + chr5_4:56297388-56297407 None:intergenic 30.0%
!! AAGTTGTATTGATTATGTGC+TGG - chr5_4:56297420-56297439 Msa0858680:intron 30.0%
! ATTTGAATGAAGAAGGCTTT+TGG - chr5_4:56297619-56297638 Msa0858680:intron 30.0%
! TTTTGGTATGGTAGAAGAAT+TGG - chr5_4:56297636-56297655 Msa0858680:intron 30.0%
TCGAGTATATTCTTTCAACA+GGG - chr5_4:56297730-56297749 Msa0858680:intron 30.0%
!!! CCTTCTTTTTTCAATGAGAA+AGG + chr5_4:56298023-56298042 None:intergenic 30.0%
CCTTTCTCATTGAAAAAAGA+AGG - chr5_4:56298020-56298039 Msa0858680:intron 30.0%
TTCTCATTGAAAAAAGAAGG+TGG - chr5_4:56298023-56298042 Msa0858680:intron 30.0%
ATATACACCGTTGTTTATGT+CGG + chr5_4:56298084-56298103 None:intergenic 30.0%
TATATGGATCAGATGAGTTT+AGG - chr5_4:56298099-56298118 Msa0858680:intron 30.0%
!!! TCTTTTGGGTTCAGAAATAA+TGG - chr5_4:56299292-56299311 Msa0858680:intron 30.0%
! TTGGGTTAATTCATTGGTTA+AGG - chr5_4:56299360-56299379 Msa0858680:intron 30.0%
AGTTGGAAATCTTCAAATTC+TGG + chr5_4:56299670-56299689 None:intergenic 30.0%
TTATGGACAGTGGGAATATA+AGG - chr5_4:56292725-56292744 Msa0858680:three_prime_UTR 35.0%
! TTCTTTTTGGACATAGCCTT+GGG - chr5_4:56292960-56292979 Msa0858680:three_prime_UTR 35.0%
CACTAAGTTTCCTTTAGTGA+GGG + chr5_4:56293005-56293024 None:intergenic 35.0%
ACACTAAGTTTCCTTTAGTG+AGG + chr5_4:56293006-56293025 None:intergenic 35.0%
GACTATTGTTTGACATTAGG+TGG - chr5_4:56293226-56293245 Msa0858680:CDS 35.0%
TTGTTTGACATTAGGTGGTT+TGG - chr5_4:56293231-56293250 Msa0858680:CDS 35.0%
!! ATTAGGTGGTTTGGTTACTT+TGG - chr5_4:56293240-56293259 Msa0858680:CDS 35.0%
! AAAAAGGATTAGCGATTGCA+GGG + chr5_4:56293859-56293878 None:intergenic 35.0%
! AAAAAAGGATTAGCGATTGC+AGG + chr5_4:56293858-56293877 None:intergenic 35.0%
!! TTTTTGGTAAATTGCTGACG+TGG + chr5_4:56293531-56293550 None:intergenic 35.0%
CGTCAGCAATTTACCAAAAA+TGG - chr5_4:56293531-56293550 Msa0858680:CDS 35.0%
GCAATTTACCAAAAATGGCA+TGG - chr5_4:56293536-56293555 Msa0858680:CDS 35.0%
!!! GTCAATTCCCATGTCATTTT+TGG - chr5_4:56293761-56293780 Msa0858680:CDS 35.0%
! AAAAAAGGATTAGCGATTGC+AGG - chr5_4:56293858-56293877 Msa0858680:CDS 35.0%
! AAAAAGGATTAGCGATTGCA+GGG - chr5_4:56293859-56293878 Msa0858680:CDS 35.0%
TTATTCGTCTCTGCAAATAG+GGG + chr5_4:56293901-56293920 None:intergenic 35.0%
GTTATTCGTCTCTGCAAATA+GGG + chr5_4:56293902-56293921 None:intergenic 35.0%
TGTTATTCGTCTCTGCAAAT+AGG + chr5_4:56293903-56293922 None:intergenic 35.0%
TATCTTAACATGTGCCTTGA+GGG + chr5_4:56294029-56294048 None:intergenic 35.0%
TTGCTTAACATGTGCCTTAA+GGG - chr5_4:56294142-56294161 Msa0858680:CDS 35.0%
! TCACTCATAAAAGTACACGA+GGG + chr5_4:56294225-56294244 None:intergenic 35.0%
! TTCACTCATAAAAGTACACG+AGG + chr5_4:56294226-56294245 None:intergenic 35.0%
ATAGTGAAATCATCTCCATG+TGG - chr5_4:56294245-56294264 Msa0858680:CDS 35.0%
ACAAAAACAAGAAGAGAGAG+AGG + chr5_4:56294295-56294314 None:intergenic 35.0%
!!! TCTCTCTTCTTGTTTTTGTG+TGG - chr5_4:56294296-56294315 Msa0858680:CDS 35.0%
AAACAAAATGCTAACCACCT+AGG + chr5_4:56294645-56294664 None:intergenic 35.0%
!! AAGGGTATTTCAATTTGCAC+GGG + chr5_4:56294777-56294796 None:intergenic 35.0%
!! GAAGGGTATTTCAATTTGCA+CGG + chr5_4:56294778-56294797 None:intergenic 35.0%
!! TCTCATTTAGTTTGGTTTGC+GGG - chr5_4:56294831-56294850 Msa0858680:CDS 35.0%
GTAAGTAGATCCTAAACGTA+GGG + chr5_4:56295362-56295381 None:intergenic 35.0%
TGTAAGTAGATCCTAAACGT+AGG + chr5_4:56295363-56295382 None:intergenic 35.0%
! TGAAAATCTCCCACATTTTG+AGG - chr5_4:56295506-56295525 Msa0858680:intron 35.0%
ATCACTAGACTACATATTCG+AGG + chr5_4:56295627-56295646 None:intergenic 35.0%
GAGGGAAAATCTTAGTAGAA+AGG + chr5_4:56295700-56295719 None:intergenic 35.0%
AGTATATATGTTAGAGGCGA+GGG + chr5_4:56295718-56295737 None:intergenic 35.0%
TAGTATATATGTTAGAGGCG+AGG + chr5_4:56295719-56295738 None:intergenic 35.0%
CACAATGATCACCATTTGAA+TGG + chr5_4:56295795-56295814 None:intergenic 35.0%
CATTCAAATGGTGATCATTG+TGG - chr5_4:56295793-56295812 Msa0858680:intron 35.0%
AGGATGAACAAACATGCATT+TGG - chr5_4:56295906-56295925 Msa0858680:intron 35.0%
GGATGAACAAACATGCATTT+GGG - chr5_4:56295907-56295926 Msa0858680:intron 35.0%
GATGAACAAACATGCATTTG+GGG - chr5_4:56295908-56295927 Msa0858680:intron 35.0%
GAAAATTCTCACTCTTGGAA+AGG + chr5_4:56296215-56296234 None:intergenic 35.0%
CTAGAGAAAATTCTCACTCT+TGG + chr5_4:56296220-56296239 None:intergenic 35.0%
!! ATATAATGCTCGGACTAGTT+TGG + chr5_4:56296322-56296341 None:intergenic 35.0%
AAAAGGCAAAGGAAGAAGAT+AGG + chr5_4:56296818-56296837 None:intergenic 35.0%
AGTGAGAGAATGATGAGAAA+GGG + chr5_4:56296868-56296887 None:intergenic 35.0%
TTGGATTGAGAGAGATATGA+TGG + chr5_4:56296898-56296917 None:intergenic 35.0%
TGAAGAAAATGGAGAAGAGT+TGG + chr5_4:56296917-56296936 None:intergenic 35.0%
ATGGAGGATAAGCTTCAAAA+GGG - chr5_4:56297510-56297529 Msa0858680:intron 35.0%
AGACAATTCAAGCAAGATTG+AGG + chr5_4:56297547-56297566 None:intergenic 35.0%
AAGAGAGAAGTAGATGAGAA+GGG - chr5_4:56297591-56297610 Msa0858680:intron 35.0%
GGTTTGGATTTGAATGAAGA+AGG - chr5_4:56297612-56297631 Msa0858680:intron 35.0%
! AATGAAGAAGGCTTTTGGTA+TGG - chr5_4:56297624-56297643 Msa0858680:intron 35.0%
AAGAATTGGATCGAAGAAGA+TGG - chr5_4:56297650-56297669 Msa0858680:intron 35.0%
AGAAGATGGAATCTGAAAAG+AGG - chr5_4:56297664-56297683 Msa0858680:intron 35.0%
GTCGAGTATATTCTTTCAAC+AGG - chr5_4:56297729-56297748 Msa0858680:intron 35.0%
! CGATTTGGACAACGAATTAA+AGG + chr5_4:56297928-56297947 None:intergenic 35.0%
TATACACCGTTGTTTATGTC+GGG + chr5_4:56298083-56298102 None:intergenic 35.0%
GACATAAACAACGGTGTATA+TGG - chr5_4:56298083-56298102 Msa0858680:intron 35.0%
! GTTTAGGATGTACAGTTTCA+AGG - chr5_4:56298115-56298134 Msa0858680:intron 35.0%
TTCTGTTGAATTCGCTGTTA+CGG + chr5_4:56298796-56298815 None:intergenic 35.0%
GAATCAAATCCATATGGTGA+GGG + chr5_4:56299043-56299062 None:intergenic 35.0%
TGAATCAAATCCATATGGTG+AGG + chr5_4:56299044-56299063 None:intergenic 35.0%
GCTGATGAATCAAATCCATA+TGG + chr5_4:56299049-56299068 None:intergenic 35.0%
ATTTCTGAACCCAAAAGAAG+CGG + chr5_4:56299290-56299309 None:intergenic 35.0%
TGAATTAACCCAAGAGACAT+CGG + chr5_4:56299353-56299372 None:intergenic 35.0%
TGTCTCTTGGGTTAATTCAT+TGG - chr5_4:56299354-56299373 Msa0858680:intron 35.0%
! AAAACCAAGAAGCTTTGACA+TGG + chr5_4:56299533-56299552 None:intergenic 35.0%
AGAGTCAAAGAACAAAGTTC+AGG - chr5_4:56299636-56299655 Msa0858680:intron 35.0%
ATTTCCAACTTCACTAGATC+AGG - chr5_4:56299680-56299699 Msa0858680:intron 35.0%
! GGAATGACTTGGAGAAATAT+TGG - chr5_4:56299701-56299720 Msa0858680:intron 35.0%
! ATTGTCCCTCTTTTCTTTAG+TGG - chr5_4:56299766-56299785 Msa0858680:intron 35.0%
! TTGTCCCTCTTTTCTTTAGT+GGG - chr5_4:56299767-56299786 Msa0858680:intron 35.0%
TTGACCCACTAAAGAAAAGA+GGG + chr5_4:56299774-56299793 None:intergenic 35.0%
ATTGACCCACTAAAGAAAAG+AGG + chr5_4:56299775-56299794 None:intergenic 35.0%
AGATTGGTATGAGATAGCCT+AGG - chr5_4:56292899-56292918 Msa0858680:three_prime_UTR 40.0%
GATTGGTATGAGATAGCCTA+GGG - chr5_4:56292900-56292919 Msa0858680:three_prime_UTR 40.0%
! GTTCTTTTTGGACATAGCCT+TGG - chr5_4:56292959-56292978 Msa0858680:three_prime_UTR 40.0%
AAGATCTAGGTAAAGACCCA+AGG + chr5_4:56292979-56292998 None:intergenic 40.0%
TTAGTGAGGGTTGAAGATCT+AGG + chr5_4:56292992-56293011 None:intergenic 40.0%
AGATCTTCAACCCTCACTAA+AGG - chr5_4:56292992-56293011 Msa0858680:three_prime_UTR 40.0%
! TCTCCATGTTCTGCTCTTTT+TGG - chr5_4:56293177-56293196 Msa0858680:CDS 40.0%
CATCCAAAAAGAGCAGAACA+TGG + chr5_4:56293183-56293202 None:intergenic 40.0%
! TGTTCTGCTCTTTTTGGATG+TGG - chr5_4:56293183-56293202 Msa0858680:CDS 40.0%
! TGTGATTTGTCCCTGCAAAT+AGG - chr5_4:56293405-56293424 Msa0858680:CDS 40.0%
! GTGATTTGTCCCTGCAAATA+GGG - chr5_4:56293406-56293425 Msa0858680:CDS 40.0%
! TGATTTGTCCCTGCAAATAG+GGG - chr5_4:56293407-56293426 Msa0858680:CDS 40.0%
TTAAACGACCCCTATTTGCA+GGG + chr5_4:56293418-56293437 None:intergenic 40.0%
TTTAAACGACCCCTATTTGC+AGG + chr5_4:56293419-56293438 None:intergenic 40.0%
CTTTGCAGGGGCAAAAAAAA+AGG + chr5_4:56293843-56293862 None:intergenic 40.0%
!!! GTCAATTCCCATGCCATTTT+TGG + chr5_4:56293547-56293566 None:intergenic 40.0%
TTGATGTGGCAGTGATTAAC+TGG - chr5_4:56293791-56293810 Msa0858680:CDS 40.0%
TGATGTGGCAGTGATTAACT+GGG - chr5_4:56293792-56293811 Msa0858680:CDS 40.0%
CTTTGCAGGGGCAAAAAAAA+AGG - chr5_4:56293843-56293862 Msa0858680:CDS 40.0%
GTATCTTAACATGTGCCTTG+AGG + chr5_4:56294030-56294049 None:intergenic 40.0%
GTTGCTTAACATGTGCCTTA+AGG - chr5_4:56294141-56294160 Msa0858680:CDS 40.0%
!! CATGTTAACTTGTGCCCTTA+AGG + chr5_4:56294159-56294178 None:intergenic 40.0%
AGTGGTTATTGGACAAGTCA+TGG - chr5_4:56294197-56294216 Msa0858680:CDS 40.0%
GTGGTTATTGGACAAGTCAT+GGG - chr5_4:56294198-56294217 Msa0858680:CDS 40.0%
AAAGTCCAACAAATGCCACA+TGG + chr5_4:56294263-56294282 None:intergenic 40.0%
!! GGCATTTGTTGGACTTTTTG+TGG - chr5_4:56294266-56294285 Msa0858680:CDS 40.0%
! TGTTTTTCCTTTTGCCTAGG+TGG - chr5_4:56294628-56294647 Msa0858680:CDS 40.0%
ACTCTCTGTCCTCAAAATGT+GGG + chr5_4:56295518-56295537 None:intergenic 40.0%
! AAACCATCTGTTGAGCATTG+AGG - chr5_4:56296582-56296601 Msa0858680:intron 40.0%
TCAATGCTAGTGGTAAGAGT+GGG + chr5_4:56296732-56296751 None:intergenic 40.0%
TTCAATGCTAGTGGTAAGAG+TGG + chr5_4:56296733-56296752 None:intergenic 40.0%
TGAAGAGCAACAAAAGGCAA+AGG + chr5_4:56296829-56296848 None:intergenic 40.0%
GTAAGGTGAAGAGCAACAAA+AGG + chr5_4:56296835-56296854 None:intergenic 40.0%
GTGAGAGAATGATGAGAAAG+GGG + chr5_4:56296867-56296886 None:intergenic 40.0%
GAGTGAGAGAATGATGAGAA+AGG + chr5_4:56296869-56296888 None:intergenic 40.0%
AGGATTTGGATTATGTGCAG+TGG - chr5_4:56297453-56297472 Msa0858680:intron 40.0%
!!! CTTTTGAAGCTTATCCTCCA+TGG + chr5_4:56297511-56297530 None:intergenic 40.0%
CATGGAGGATAAGCTTCAAA+AGG - chr5_4:56297509-56297528 Msa0858680:intron 40.0%
CAAGAGAGAAGTAGATGAGA+AGG - chr5_4:56297590-56297609 Msa0858680:intron 40.0%
AGAAGTAGATGAGAAGGGTT+TGG - chr5_4:56297596-56297615 Msa0858680:intron 40.0%
ACAGGGAAGATTGATGTCAA+CGG - chr5_4:56297747-56297766 Msa0858680:intron 40.0%
ATTGATGTCAACGGAGTTTG+TGG - chr5_4:56297756-56297775 Msa0858680:intron 40.0%
TGATGCTAGTGGAAACAAAC+CGG - chr5_4:56297884-56297903 Msa0858680:intron 40.0%
TTGGACAACGAATTAAAGGC+TGG + chr5_4:56297924-56297943 None:intergenic 40.0%
!! GTGTTGGAGATGTTTTTGAG+AGG - chr5_4:56297957-56297976 Msa0858680:intron 40.0%
!! TAAGTGCTGAACTCATCCAA+GGG - chr5_4:56297985-56298004 Msa0858680:intron 40.0%
TCGGGCAACGATATATCAAT+AGG + chr5_4:56298065-56298084 None:intergenic 40.0%
TTCTCACCTGGATGAACAAA+GGG + chr5_4:56298185-56298204 None:intergenic 40.0%
ATTCTCACCTGGATGAACAA+AGG + chr5_4:56298186-56298205 None:intergenic 40.0%
!! AGCTGTAAGGGTATTTCCTT+GGG + chr5_4:56298223-56298242 None:intergenic 40.0%
GTCAATTCCACTAGCTGAAT+AGG + chr5_4:56298468-56298487 None:intergenic 40.0%
AGTTGACATAGGCAAAGATG+AGG + chr5_4:56298522-56298541 None:intergenic 40.0%
! GGTGTTGAAACAGTTGACAT+AGG + chr5_4:56298533-56298552 None:intergenic 40.0%
! CACTCAAAGCACTCTTCAAA+CGG + chr5_4:56298655-56298674 None:intergenic 40.0%
GATCTTGAGATGGAATTGCT+CGG - chr5_4:56298686-56298705 Msa0858680:intron 40.0%
ATTCGCTGTTACGGAAAGAT+GGG + chr5_4:56298787-56298806 None:intergenic 40.0%
AATTCGCTGTTACGGAAAGA+TGG + chr5_4:56298788-56298807 None:intergenic 40.0%
AAGAGGTCATCAAGGTTAGT+TGG + chr5_4:56298833-56298852 None:intergenic 40.0%
ATGCGCCAAAACATGAACAT+GGG - chr5_4:56298950-56298969 Msa0858680:intron 40.0%
! TTTGGCCCATGTTCATGTTT+TGG + chr5_4:56298958-56298977 None:intergenic 40.0%
! GAGGAAGGCATATTGTTTGA+TGG + chr5_4:56299007-56299026 None:intergenic 40.0%
AAACTCGATTGGGGTGTAAA+CGG - chr5_4:56299238-56299257 Msa0858680:intron 40.0%
! TGAGGAAATCCGCTTCTTTT+GGG - chr5_4:56299278-56299297 Msa0858680:intron 40.0%
GAATTAACCCAAGAGACATC+GGG + chr5_4:56299352-56299371 None:intergenic 40.0%
GATGTTCCATCTGAGAATTC+CGG - chr5_4:56299382-56299401 Msa0858680:intron 40.0%
! TATATGGTGCCGAGAATATG+TGG - chr5_4:56299407-56299426 Msa0858680:intron 40.0%
CATTCCTGATCTAGTGAAGT+TGG + chr5_4:56299687-56299706 None:intergenic 40.0%
TCACTAGATCAGGAATGACT+TGG - chr5_4:56299690-56299709 Msa0858680:intron 40.0%
!!! GGGTCTCTATCGACTCATTT+TGG - chr5_4:56292924-56292943 Msa0858680:three_prime_UTR 45.0%
AGTGAGCTTGATCTTGCAAG+TGG + chr5_4:56293136-56293155 None:intergenic 45.0%
!! AGGTGGTTTGGTTACTTTGG+AGG - chr5_4:56293243-56293262 Msa0858680:CDS 45.0%
GCAGTGATTAACTGGGTCAA+AGG + chr5_4:56293799-56293818 None:intergenic 45.0%
TGACGTGGCAGTGATTAACT+GGG + chr5_4:56293516-56293535 None:intergenic 45.0%
GGAATTGACGAAAATACCCC+TGG - chr5_4:56293558-56293577 Msa0858680:CDS 45.0%
GGAATTGACGAAAATACCCC+TGG + chr5_4:56293558-56293577 None:intergenic 45.0%
GCAGTGATTAACTGGGTCAA+AGG - chr5_4:56293799-56293818 Msa0858680:CDS 45.0%
CATCTCCATGTGGCATTTGT+TGG - chr5_4:56294255-56294274 Msa0858680:CDS 45.0%
ATGCTAACCACCTAGGCAAA+AGG + chr5_4:56294638-56294657 None:intergenic 45.0%
CACTCTCTGTCCTCAAAATG+TGG + chr5_4:56295519-56295538 None:intergenic 45.0%
TTGAGGCTCCCTTGGAAAAA+TGG - chr5_4:56296599-56296618 Msa0858680:intron 45.0%
! TATGTGCTGGTCTATTGTGC+AGG - chr5_4:56297433-56297452 Msa0858680:intron 45.0%
CTGGTCTATTGTGCAGGATT+TGG - chr5_4:56297439-56297458 Msa0858680:intron 45.0%
TTCTTCATCAGACTGTGCCA+TGG - chr5_4:56297491-56297510 Msa0858680:intron 45.0%
ATGAAGAGCAGTGGCCATAT+CGG + chr5_4:56297784-56297803 None:intergenic 45.0%
AACAGCACAATGAAGAGCAG+TGG + chr5_4:56297793-56297812 None:intergenic 45.0%
AAGACAATCAGCATCTGCAC+CGG + chr5_4:56297865-56297884 None:intergenic 45.0%
GCTGATTGTCTTGATGCTAG+TGG - chr5_4:56297873-56297892 Msa0858680:intron 45.0%
ATTCGTTGTCCAAATCGCGT+AGG - chr5_4:56297931-56297950 Msa0858680:intron 45.0%
!! GGAGATGTTTTTGAGAGGTG+AGG - chr5_4:56297962-56297981 Msa0858680:intron 45.0%
!! GTAAGTGCTGAACTCATCCA+AGG - chr5_4:56297984-56298003 Msa0858680:intron 45.0%
!! AAGTGCTGAACTCATCCAAG+GGG - chr5_4:56297986-56298005 Msa0858680:intron 45.0%
TCGTTGCCCGACATAAACAA+CGG - chr5_4:56298074-56298093 Msa0858680:intron 45.0%
TGGATGAACAAAGGGACACT+CGG + chr5_4:56298177-56298196 None:intergenic 45.0%
TTCATCCAGGTGAGAATGCA+AGG - chr5_4:56298189-56298208 Msa0858680:intron 45.0%
!! CAGCTGTAAGGGTATTTCCT+TGG + chr5_4:56298224-56298243 None:intergenic 45.0%
GATTCTTGCGAGTATGCACA+TGG - chr5_4:56298287-56298306 Msa0858680:intron 45.0%
!!! CACATGGTGTTTTCGAGTCA+TGG - chr5_4:56298303-56298322 Msa0858680:intron 45.0%
!! AAGCCTTGTTCGGTATTGTG+CGG + chr5_4:56298336-56298355 None:intergenic 45.0%
ATACCGAACAAGGCTTTGCA+AGG - chr5_4:56298340-56298359 Msa0858680:intron 45.0%
GCTGAATAGGACTTTGGTGA+AGG + chr5_4:56298455-56298474 None:intergenic 45.0%
CCACTAGCTGAATAGGACTT+TGG + chr5_4:56298461-56298480 None:intergenic 45.0%
CCAAAGTCCTATTCAGCTAG+TGG - chr5_4:56298458-56298477 Msa0858680:intron 45.0%
GATGAGGAGCTAAGAGACAA+CGG + chr5_4:56298506-56298525 None:intergenic 45.0%
TGCCACATGTTTCCACTCTT+GGG + chr5_4:56298587-56298606 None:intergenic 45.0%
!! TGAAGAGTGCTTTGAGTGCA+AGG - chr5_4:56298657-56298676 Msa0858680:intron 45.0%
!! GAAGAGTGCTTTGAGTGCAA+GGG - chr5_4:56298658-56298677 Msa0858680:intron 45.0%
AAGGGATCTCGATCTTGAGA+TGG - chr5_4:56298676-56298695 Msa0858680:intron 45.0%
TTCGCTGTTACGGAAAGATG+GGG + chr5_4:56298786-56298805 None:intergenic 45.0%
CTGATGCTAAGAGGTCATCA+AGG + chr5_4:56298841-56298860 None:intergenic 45.0%
TAGGATCAGCTGATGCTAAG+AGG + chr5_4:56298850-56298869 None:intergenic 45.0%
!! ATCTGTTGTGTGGGTGTTGA+TGG + chr5_4:56298908-56298927 None:intergenic 45.0%
GATGCGCCAAAACATGAACA+TGG - chr5_4:56298949-56298968 Msa0858680:intron 45.0%
! TTGATGGATAACTTGCGCGA+AGG + chr5_4:56298991-56299010 None:intergenic 45.0%
CAGCTGCAGTGATGAATTCT+AGG - chr5_4:56299077-56299096 Msa0858680:intron 45.0%
AGCCAAAGTTTCATTGACCG+TGG - chr5_4:56299124-56299143 Msa0858680:intron 45.0%
CACCACGGTCAATGAAACTT+TGG + chr5_4:56299129-56299148 None:intergenic 45.0%
! CTGAGGAAATCCGCTTCTTT+TGG - chr5_4:56299277-56299296 Msa0858680:intron 45.0%
TATACGCCGGAATTCTCAGA+TGG + chr5_4:56299391-56299410 None:intergenic 45.0%
TCTGAGAATTCCGGCGTATA+TGG - chr5_4:56299391-56299410 Msa0858680:intron 45.0%
!! TTAAAAATCATAAAAAATTT+CGG - chr5_4:56293608-56293627 Msa0858680:CDS 5.0%
!! CAAATTTATAAAAAAAAAAA+AGG + chr5_4:56295218-56295237 None:intergenic 5.0%
!!! CTTTTTTTTTTTTATAAATT+TGG - chr5_4:56295216-56295235 Msa0858680:intron 5.0%
!!! ATTAAATATAGTATTTTTTT+AGG - chr5_4:56296088-56296107 Msa0858680:intron 5.0%
!!! TTAAATATAGTATTTTTTTA+GGG - chr5_4:56296089-56296108 Msa0858680:intron 5.0%
TGGTATGAGATAGCCTAGGG+AGG - chr5_4:56292903-56292922 Msa0858680:three_prime_UTR 50.0%
GGTATGAGATAGCCTAGGGA+GGG - chr5_4:56292904-56292923 Msa0858680:three_prime_UTR 50.0%
! ACTTTGGAGGCTGCGAAATG+AGG - chr5_4:56293256-56293275 Msa0858680:CDS 50.0%
CTGACGTGGCAGTGATTAAC+TGG + chr5_4:56293517-56293536 None:intergenic 50.0%
!! GTTAACTTGTGCTGCCCTCA+AGG - chr5_4:56294012-56294031 Msa0858680:CDS 50.0%
TGTACGGAGTCCCTACGTTT+AGG - chr5_4:56295349-56295368 Msa0858680:intron 50.0%
! GGTGATCATTGTGGGCTGAT+AGG - chr5_4:56295802-56295821 Msa0858680:intron 50.0%
GAGCCTCAATGCTCAACAGA+TGG + chr5_4:56296588-56296607 None:intergenic 50.0%
AGGCTCCCTTGGAAAAATGG+TGG - chr5_4:56296602-56296621 Msa0858680:intron 50.0%
GGCTCCCTTGGAAAAATGGT+GGG - chr5_4:56296603-56296622 Msa0858680:intron 50.0%
! TCCCTTGGAAAAATGGTGGG+TGG - chr5_4:56296606-56296625 Msa0858680:intron 50.0%
!! CCCACCCACCATTTTTCCAA+GGG + chr5_4:56296610-56296629 None:intergenic 50.0%
!! CCCTTGGAAAAATGGTGGGT+GGG - chr5_4:56296607-56296626 Msa0858680:intron 50.0%
TTCATCAGACTGTGCCATGG+AGG - chr5_4:56297494-56297513 Msa0858680:intron 50.0%
CGGAGTTTGTGGTTCCGATA+TGG - chr5_4:56297767-56297786 Msa0858680:intron 50.0%
! GCTCTTCATTGTGCTGTTGC+TGG - chr5_4:56297795-56297814 Msa0858680:intron 50.0%
! CTTCATTGTGCTGTTGCTGG+TGG - chr5_4:56297798-56297817 Msa0858680:intron 50.0%
!!! TGGTTCTGAGTTTTCGCTCG+AGG - chr5_4:56297818-56297837 Msa0858680:intron 50.0%
GTCAAGCTCTTGCTTGATGC+CGG - chr5_4:56297843-56297862 Msa0858680:intron 50.0%
GTTGTCCAAATCGCGTAGGA+AGG - chr5_4:56297935-56297954 Msa0858680:intron 50.0%
CAACACCTTCCTACGCGATT+TGG + chr5_4:56297943-56297962 None:intergenic 50.0%
! CAAATCGCGTAGGAAGGTGT+TGG - chr5_4:56297941-56297960 Msa0858680:intron 50.0%
TGAACTCATCCAAGGGGAGA+TGG - chr5_4:56297992-56298011 Msa0858680:intron 50.0%
GAGTGTCCCTTTGTTCATCC+AGG - chr5_4:56298176-56298195 Msa0858680:intron 50.0%
ATCCAGGTGAGAATGCAAGG+AGG - chr5_4:56298192-56298211 Msa0858680:intron 50.0%
ACTCGCAAGAATCCCCTTTC+TGG + chr5_4:56298280-56298299 None:intergenic 50.0%
ATCCCGCACAATACCGAACA+AGG - chr5_4:56298330-56298349 Msa0858680:intron 50.0%
!! AGCCTTGTTCGGTATTGTGC+GGG + chr5_4:56298335-56298354 None:intergenic 50.0%
!! CGTCCTTGCAAAGCCTTGTT+CGG + chr5_4:56298346-56298365 None:intergenic 50.0%
! AACCAGTGGAGGCATACACA+GGG + chr5_4:56298424-56298443 None:intergenic 50.0%
! TGAAGGCATAGCTGAACCAG+TGG + chr5_4:56298438-56298457 None:intergenic 50.0%
GGAGATGATGAACCTGCCAA+GGG + chr5_4:56298566-56298585 None:intergenic 50.0%
GGTTCATCATCTCCCAAGAG+TGG - chr5_4:56298572-56298591 Msa0858680:intron 50.0%
CTCCCAAGAGTGGAAACATG+TGG - chr5_4:56298582-56298601 Msa0858680:intron 50.0%
CTGCCACATGTTTCCACTCT+TGG + chr5_4:56298588-56298607 None:intergenic 50.0%
CACTCTTCAAACGGCTACCT+GGG + chr5_4:56298646-56298665 None:intergenic 50.0%
TGAGATGGAATTGCTCGGTC+TGG - chr5_4:56298691-56298710 Msa0858680:intron 50.0%
!! TGTGGGTGTTGATGGTTGCA+TGG + chr5_4:56298900-56298919 None:intergenic 50.0%
! GGAGAGTGCATCTGTTGTGT+GGG + chr5_4:56298917-56298936 None:intergenic 50.0%
! TGGAGAGTGCATCTGTTGTG+TGG + chr5_4:56298918-56298937 None:intergenic 50.0%
! CGCGAAGGTGGTTCATGTTT+TGG + chr5_4:56298976-56298995 None:intergenic 50.0%
! ATGGATAACTTGCGCGAAGG+TGG + chr5_4:56298988-56299007 None:intergenic 50.0%
ATATGCCTTCCTCTCCAGTG+AGG - chr5_4:56299014-56299033 Msa0858680:intron 50.0%
AAGGCGGAGAAAGTCCAAGA+TGG + chr5_4:56299162-56299181 None:intergenic 50.0%
TCGGTATGTTGGGATGCAGT+TGG + chr5_4:56299328-56299347 None:intergenic 50.0%
ATTCTCGGCACCATATACGC+CGG + chr5_4:56299404-56299423 None:intergenic 50.0%
CTGCAGCTGCCACATATTCT+CGG + chr5_4:56299419-56299438 None:intergenic 50.0%
TTGTACATCTGCTCCACCCA+TGG + chr5_4:56299472-56299491 None:intergenic 50.0%
GGAGCAGATGTACAAAGAGC+AGG - chr5_4:56299477-56299496 Msa0858680:intron 50.0%
GTACAAAGAGCAGGAGCAGA+TGG - chr5_4:56299486-56299505 Msa0858680:intron 50.0%
GCAGCCATGTCAAAGCTTCT+TGG - chr5_4:56299526-56299545 Msa0858680:intron 50.0%
AGTCGATAGAGACCCTCCCT+AGG + chr5_4:56292919-56292938 None:intergenic 55.0%
!! GTTGAGCATTGAGGCTCCCT+TGG - chr5_4:56296591-56296610 Msa0858680:intron 55.0%
!! GCCCACCCACCATTTTTCCA+AGG + chr5_4:56296611-56296630 None:intergenic 55.0%
TAAGCAAACGCTGCTGCCTG+TGG - chr5_4:56296704-56296723 Msa0858680:intron 55.0%
AAGCAAACGCTGCTGCCTGT+GGG - chr5_4:56296705-56296724 Msa0858680:intron 55.0%
GCTGGCGCAATCAGATCAAC+CGG + chr5_4:56297906-56297925 None:intergenic 55.0%
TCAAGGTGAAGCCATGCTCG+AGG - chr5_4:56298132-56298151 Msa0858680:intron 55.0%
CAAGGTGAAGCCATGCTCGA+GGG - chr5_4:56298133-56298152 Msa0858680:intron 55.0%
TGAGAGTAAGCCCTCGAGCA+TGG + chr5_4:56298146-56298165 None:intergenic 55.0%
CGAGGGCTTACTCTCACGAT+TGG - chr5_4:56298150-56298169 Msa0858680:intron 55.0%
CTCCTCCTTGCATTCTCACC+TGG + chr5_4:56298197-56298216 None:intergenic 55.0%
ATGCAAGGAGGAGAGACCCA+AGG - chr5_4:56298204-56298223 Msa0858680:intron 55.0%
GGCAGGGAACACAGCTGTAA+GGG + chr5_4:56298235-56298254 None:intergenic 55.0%
ACGACCCCTTGCGAAACTCT+GGG + chr5_4:56298256-56298275 None:intergenic 55.0%
AGGCTTTGCAAGGACGAGAC+TGG - chr5_4:56298350-56298369 Msa0858680:intron 55.0%
ATACACAGGGCGCAGCTCTT+CGG + chr5_4:56298411-56298430 None:intergenic 55.0%
! GAACCAGTGGAGGCATACAC+AGG + chr5_4:56298425-56298444 None:intergenic 55.0%
AGGCATAGCTGAACCAGTGG+AGG + chr5_4:56298435-56298454 None:intergenic 55.0%
AACACCACCCATGTCTCCCT+TGG - chr5_4:56298547-56298566 Msa0858680:intron 55.0%
GAACCTGCCAAGGGAGACAT+GGG + chr5_4:56298557-56298576 None:intergenic 55.0%
TGAACCTGCCAAGGGAGACA+TGG + chr5_4:56298558-56298577 None:intergenic 55.0%
GGGAGATGATGAACCTGCCA+AGG + chr5_4:56298567-56298586 None:intergenic 55.0%
GCACTCTTCAAACGGCTACC+TGG + chr5_4:56298647-56298666 None:intergenic 55.0%
GCTGTTACGGAAAGATGGGG+AGG + chr5_4:56298783-56298802 None:intergenic 55.0%
TGGCGCATCTGCATTGCACT+TGG + chr5_4:56298938-56298957 None:intergenic 55.0%
TATGGTGAGGGCTTCCTCAC+TGG + chr5_4:56299031-56299050 None:intergenic 55.0%
GTGAGGAAGCCCTCACCATA+TGG - chr5_4:56299031-56299050 Msa0858680:intron 55.0%
CATCACTGCAGCTGCTACTG+CGG + chr5_4:56299071-56299090 None:intergenic 55.0%
GATGGTGAGTTGCAGCACCA+CGG + chr5_4:56299144-56299163 None:intergenic 55.0%
! GGTGCTGCAACTCACCATCT+TGG - chr5_4:56299145-56299164 Msa0858680:intron 55.0%
TGTCGTCCGGCCTTTCAGAT+TGG - chr5_4:56299200-56299219 Msa0858680:intron 55.0%
GTCGTCCGGCCTTTCAGATT+GGG - chr5_4:56299201-56299220 Msa0858680:intron 55.0%
TCGTCCGGCCTTTCAGATTG+GGG - chr5_4:56299202-56299221 Msa0858680:intron 55.0%
GGAACCCCAATCTGAAAGGC+CGG + chr5_4:56299209-56299228 None:intergenic 55.0%
TGGGGGAACCCCAATCTGAA+AGG + chr5_4:56299213-56299232 None:intergenic 55.0%
CCAATCGAGTTTCCCAGTGG+GGG + chr5_4:56299230-56299249 None:intergenic 55.0%
CCCAATCGAGTTTCCCAGTG+GGG + chr5_4:56299231-56299250 None:intergenic 55.0%
CCCCACTGGGAAACTCGATT+GGG - chr5_4:56299228-56299247 Msa0858680:intron 55.0%
CCCCAATCGAGTTTCCCAGT+GGG + chr5_4:56299232-56299251 None:intergenic 55.0%
CCCACTGGGAAACTCGATTG+GGG - chr5_4:56299229-56299248 Msa0858680:intron 55.0%
ACCCCAATCGAGTTTCCCAG+TGG + chr5_4:56299233-56299252 None:intergenic 55.0%
GTGACGAGCTGAACAAGCTG+AGG - chr5_4:56299260-56299279 Msa0858680:intron 55.0%
! GACATCGGGCTCGGTATGTT+GGG + chr5_4:56299338-56299357 None:intergenic 55.0%
! AGACATCGGGCTCGGTATGT+TGG + chr5_4:56299339-56299358 None:intergenic 55.0%
ATACCGAGCCCGATGTCTCT+TGG - chr5_4:56299341-56299360 Msa0858680:intron 55.0%
TACCGAGCCCGATGTCTCTT+GGG - chr5_4:56299342-56299361 Msa0858680:intron 55.0%
AACCCAAGAGACATCGGGCT+CGG + chr5_4:56299347-56299366 None:intergenic 55.0%
TCGAGACGTGCTTCCACCAT+GGG - chr5_4:56299453-56299472 Msa0858680:intron 55.0%
TACATCTGCTCCACCCATGG+TGG + chr5_4:56299469-56299488 None:intergenic 55.0%
GTGGTAAGAGTGGGTCCCAC+AGG + chr5_4:56296723-56296742 None:intergenic 60.0%
!! AAGGAGCGTCCATCTCCCCT+TGG + chr5_4:56298004-56298023 None:intergenic 60.0%
GGGCAGGGAACACAGCTGTA+AGG + chr5_4:56298236-56298255 None:intergenic 60.0%
TCCCTGCCCAGAGTTTCGCA+AGG - chr5_4:56298247-56298266 Msa0858680:intron 60.0%
CCCTTGCGAAACTCTGGGCA+GGG + chr5_4:56298251-56298270 None:intergenic 60.0%
CCCTGCCCAGAGTTTCGCAA+GGG - chr5_4:56298248-56298267 Msa0858680:intron 60.0%
CCTGCCCAGAGTTTCGCAAG+GGG - chr5_4:56298249-56298268 Msa0858680:intron 60.0%
CACGACCCCTTGCGAAACTC+TGG + chr5_4:56298257-56298276 None:intergenic 60.0%
GCAAGGGGTCGTGCCAGAAA+GGG - chr5_4:56298264-56298283 Msa0858680:intron 60.0%
CAAGGGGTCGTGCCAGAAAG+GGG - chr5_4:56298265-56298284 Msa0858680:intron 60.0%
TACACAGGGCGCAGCTCTTC+GGG + chr5_4:56298410-56298429 None:intergenic 60.0%
!! GCTGCAACGATGGTGGAGTG+AGG + chr5_4:56298622-56298641 None:intergenic 60.0%
CTACCTGGGAGCTGCAACGA+TGG + chr5_4:56298632-56298651 None:intergenic 60.0%
TGCTGCTGCTGTTGACGACG+AGG + chr5_4:56298722-56298741 None:intergenic 60.0%
GGCTTCCTCACTGGAGAGGA+AGG + chr5_4:56299022-56299041 None:intergenic 60.0%
TGAGGGCTTCCTCACTGGAG+AGG + chr5_4:56299026-56299045 None:intergenic 60.0%
! TTGGCTGCGCTGCTTTGCGA+AGG + chr5_4:56299110-56299129 None:intergenic 60.0%
CTGCAGGAAGGGTTGGAAGG+CGG + chr5_4:56299178-56299197 None:intergenic 60.0%
GCCTTCCAACCCTTCCTGCA+GGG - chr5_4:56299177-56299196 Msa0858680:intron 60.0%
ACCCTGCAGGAAGGGTTGGA+AGG + chr5_4:56299181-56299200 None:intergenic 60.0%
TCAGATTGGGGTTCCCCCAC+TGG - chr5_4:56299214-56299233 Msa0858680:intron 60.0%
CAGATTGGGGTTCCCCCACT+GGG - chr5_4:56299215-56299234 Msa0858680:intron 60.0%
CCCCCACTGGGAAACTCGAT+TGG - chr5_4:56299227-56299246 Msa0858680:intron 60.0%
!! TGGGATGCAGTTGGTGCTGC+TGG + chr5_4:56299319-56299338 None:intergenic 60.0%
GTCGAGACGTGCTTCCACCA+TGG - chr5_4:56299452-56299471 Msa0858680:intron 60.0%
AGACGTGCTTCCACCATGGG+TGG - chr5_4:56299456-56299475 Msa0858680:intron 60.0%
CCCCTTGCGAAACTCTGGGC+AGG + chr5_4:56298252-56298271 None:intergenic 65.0%
CGCAAGGGGTCGTGCCAGAA+AGG - chr5_4:56298263-56298282 Msa0858680:intron 65.0%
CGCCCTGTGTATGCCTCCAC+TGG - chr5_4:56298419-56298438 Msa0858680:intron 65.0%
CCTGCCAAGGGAGACATGGG+TGG + chr5_4:56298554-56298573 None:intergenic 65.0%
CCACCCATGTCTCCCTTGGC+AGG - chr5_4:56298551-56298570 Msa0858680:intron 65.0%
CCTGGGAGCTGCAACGATGG+TGG + chr5_4:56298629-56298648 None:intergenic 65.0%
CCACCATCGTTGCAGCTCCC+AGG - chr5_4:56298626-56298645 Msa0858680:intron 65.0%
CGCCTTCCAACCCTTCCTGC+AGG - chr5_4:56299176-56299195 Msa0858680:intron 65.0%
CGACACCCTGCAGGAAGGGT+TGG + chr5_4:56299185-56299204 None:intergenic 65.0%
CGGACGACACCCTGCAGGAA+GGG + chr5_4:56299189-56299208 None:intergenic 65.0%
!! CCTTCCTGCAGGGTGTCGTC+CGG - chr5_4:56299187-56299206 Msa0858680:intron 65.0%
CCGGACGACACCCTGCAGGA+AGG + chr5_4:56299190-56299209 None:intergenic 70.0%
AAGGCCGGACGACACCCTGC+AGG + chr5_4:56299194-56299213 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 56292712 56299906 56292712 ID=Msa0858680;Name=Msa0858680
chr5_4 mRNA 56292712 56299906 56292712 ID=Msa0858680-mRNA-1;Parent=Msa0858680;Name=Msa0858680-mRNA-1;_AED=0.04;_eAED=0.04;_QI=0|0|0.5|0.5|0|0.5|2|390|688
chr5_4 exon 56292712 56295163 56292712 ID=Msa0858680-mRNA-1:exon:17220;Parent=Msa0858680-mRNA-1
chr5_4 exon 56299902 56299906 56299902 ID=Msa0858680-mRNA-1:exon:17219;Parent=Msa0858680-mRNA-1
chr5_4 CDS 56299902 56299906 56299902 ID=Msa0858680-mRNA-1:cds;Parent=Msa0858680-mRNA-1
chr5_4 CDS 56293102 56295163 56293102 ID=Msa0858680-mRNA-1:cds;Parent=Msa0858680-mRNA-1
chr5_4 three_prime_UTR 56292712 56293101 56292712 ID=Msa0858680-mRNA-1:three_prime_utr;Parent=Msa0858680-mRNA-1
Gene Sequence

>Msa0858680

ATGAGGATTTGGATTATGTGCAGTGGTTCAAAGAGTAAACTTTCTTCATCAGACTGTGCCATGGAGGATAAGCTTCAAAAGGGTGTTCACAACTCCTCAATCTTGCTTGAATTGTCTGCATCTGATGATTTTGATGCTTTCAAGAGAGAAGTAGATGAGAAGGGTTTGGATTTGAATGAAGAAGGCTTTTGGTATGGTAGAAGAATTGGATCGAAGAAGATGGAATCTGAAAAGAGGACTCCTCTTATGATTGCTTCCTTGTTTGGAAGCACTAGAGTGGTCGAGTATATTCTTTCAACAGGGAAGATTGATGTCAACGGAGTTTGTGGTTCCGATATGGCCACTGCTCTTCATTGTGCTGTTGCTGGTGGTTCTGAGTTTTCGCTCGAGGTTGTCAAGCTCTTGCTTGATGCCGGTGCAGATGCTGATTGTCTTGATGCTAGTGGAAACAAACCGGTTGATCTGATTGCGCCAGCCTTTAATTCGTTGTCCAAATCGCGTAGGAAGGTGTTGGAGATGTTTTTGAGAGGTGAGGTAAGTGCTGAACTCATCCAAGGGGAGATGGACGCTCCTTTCTCATTGAAAAAAGAAGGTGGTGATAAGAAAGAGTTTCCTATTGATATATCGTTGCCCGACATAAACAACGGTGTATATGGATCAGATGAGTTTAGGATGTACAGTTTCAAGGTGAAGCCATGCTCGAGGGCTTACTCTCACGATTGGACCGAGTGTCCCTTTGTTCATCCAGGTGAGAATGCAAGGAGGAGAGACCCAAGGAAATACCCTTACAGCTGTGTTCCCTGCCCAGAGTTTCGCAAGGGGTCGTGCCAGAAAGGGGATTCTTGCGAGTATGCACATGGTGTTTTCGAGTCATGGCTACATCCCGCACAATACCGAACAAGGCTTTGCAAGGACGAGACTGGATGCAATAGAAAAGTCTGCTTCTTTGCTCACAGACCCGAAGAGCTGCGCCCTGTGTATGCCTCCACTGGTTCAGCTATGCCTTCACCAAAGTCCTATTCAGCTAGTGGAATTGACATGACATCGATGAGTCCGTTGTCTCTTAGCTCCTCATCTTTGCCTATGTCAACTGTTTCAACACCACCCATGTCTCCCTTGGCAGGTTCATCATCTCCCAAGAGTGGAAACATGTGGCAGAACAAATTAAACCTCACTCCACCATCGTTGCAGCTCCCAGGTAGCCGTTTGAAGAGTGCTTTGAGTGCAAGGGATCTCGATCTTGAGATGGAATTGCTCGGTCTGGATAGTCCTCGTCGTCAACAGCAGCAGCAGCAACAACAACAATTGATTGAAGAGATTGCTAGAATCTCCTCCCCATCTTTCCGTAACAGCGAATTCAACAGAATTGCTGATTTGAATCCAACTAACCTTGATGACCTCTTAGCATCAGCTGATCCTAATTTACTATCTCAACTACATGGACTTTCCATGCAACCATCAACACCCACACAACAGATGCACTCTCCAAGTGCAATGCAGATGCGCCAAAACATGAACATGGGCCAAAACATGAACCACCTTCGCGCAAGTTATCCATCAAACAATATGCCTTCCTCTCCAGTGAGGAAGCCCTCACCATATGGATTTGATTCATCAGCCGCAGTAGCAGCTGCAGTGATGAATTCTAGGTCTGCTGCCTTCGCAAAGCAGCGCAGCCAAAGTTTCATTGACCGTGGTGCTGCAACTCACCATCTTGGACTTTCTCCGCCTTCCAACCCTTCCTGCAGGGTGTCGTCCGGCCTTTCAGATTGGGGTTCCCCCACTGGGAAACTCGATTGGGGTGTAAACGGTGACGAGCTGAACAAGCTGAGGAAATCCGCTTCTTTTGGGTTCAGAAATAATGGACCAGCAGCACCAACTGCATCCCAACATACCGAGCCCGATGTCTCTTGGGTTAATTCATTGGTTAAGGATGTTCCATCTGAGAATTCCGGCGTATATGGTGCCGAGAATATGTGGCAGCTGCAGCAATATGATCTGAGTCGAGACGTGCTTCCACCATGGGTGGAGCAGATGTACAAAGAGCAGGAGCAGATGGTAGCATGA
Protein sequence

>Msa0858680

MRIWIMCSGSKSKLSSSDCAMEDKLQKGVHNSSILLELSASDDFDAFKREVDEKGLDLNEEGFWYGRRIGSKKMESEKRTPLMIASLFGSTRVVEYILSTGKIDVNGVCGSDMATALHCAVAGGSEFSLEVVKLLLDAGADADCLDASGNKPVDLIAPAFNSLSKSRRKVLEMFLRGEVSAELIQGEMDAPFSLKKEGGDKKEFPIDISLPDINNGVYGSDEFRMYSFKVKPCSRAYSHDWTECPFVHPGENARRRDPRKYPYSCVPCPEFRKGSCQKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCNRKVCFFAHRPEELRPVYASTGSAMPSPKSYSASGIDMTSMSPLSLSSSSLPMSTVSTPPMSPLAGSSSPKSGNMWQNKLNLTPPSLQLPGSRLKSALSARDLDLEMELLGLDSPRRQQQQQQQQQLIEEIARISSPSFRNSEFNRIADLNPTNLDDLLASADPNLLSQLHGLSMQPSTPTQQMHSPSAMQMRQNMNMGQNMNHLRASYPSNNMPSSPVRKPSPYGFDSSAAVAAAVMNSRSAAFAKQRSQSFIDRGAATHHLGLSPPSNPSCRVSSGLSDWGSPTGKLDWGVNGDELNKLRKSASFGFRNNGPAAPTASQHTEPDVSWVNSLVKDVPSENSGVYGAENMWQLQQYDLSRDVLPPWVEQMYKEQEQMVA*