Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1327670 | XP_024627457.1 | 96.552 | 116 | 4 | 0 | 1 | 116 | 1 | 116 | 7.29e-68 | 222 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1327670 | A0A396GM12 | 96.552 | 116 | 4 | 0 | 1 | 116 | 1 | 116 | 4.48e-68 | 222 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1197350 | Msa1327670 | 0.845278 | 4.486760e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1327670 | MtrunA17_Chr8g0366071 | 96.552 | 116 | 4 | 0 | 1 | 116 | 1 | 116 | 8.63e-72 | 222 |
| Msa1327670 | MtrunA17_Chr6g0480701 | 62.025 | 79 | 26 | 1 | 183 | 257 | 167 | 245 | 6.80e-26 | 106 |
| Msa1327670 | MtrunA17_Chr5g0420791 | 50.862 | 116 | 53 | 3 | 1 | 116 | 1 | 112 | 6.55e-12 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 38 sgRNAs with CRISPR-Local
Find 255 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCCTCTGGGTGGCGTCTC+TGG | 0.267365 | 8_4:+45009559 | None:intergenic |
| TGCAATCTAGACTAGCCTTT+TGG | 0.301286 | 8_4:-45007906 | Msa1327670:CDS |
| AGCTGATTCTTTGACTCCAT+TGG | 0.322748 | 8_4:-45011310 | Msa1327670:CDS |
| CATTAGAAGCACTAAGTACT+TGG | 0.334713 | 8_4:-45007989 | Msa1327670:CDS |
| CCTGTCTACGTACTTCTTCC+TGG | 0.342398 | 8_4:+45009450 | None:intergenic |
| TTCAAGAAAGTGTACCCTAT+TGG | 0.391313 | 8_4:-45011411 | Msa1327670:CDS |
| TTAGCTCTTCCCTTAAGAAT+AGG | 0.404134 | 8_4:+45007961 | None:intergenic |
| CTTTGACTCCATTGGATGAA+AGG | 0.411007 | 8_4:-45011302 | Msa1327670:CDS |
| AAATGTAAGAAAACAAGCTT+TGG | 0.439042 | 8_4:-45011499 | Msa1327670:CDS |
| TAAACTAGGTAGAGTAACTT+TGG | 0.454445 | 8_4:-45007866 | Msa1327670:CDS |
| GTAAGAAGGAATGGAGGAAA+TGG | 0.467702 | 8_4:+45007834 | None:intergenic |
| GAACAATCTATGCTTCCAAA+AGG | 0.491015 | 8_4:+45007891 | None:intergenic |
| GCAAAACCGTATTGAGGGTA+TGG | 0.497485 | 8_4:+45009496 | None:intergenic |
| ATCTAGCAAAACCGTATTGA+GGG | 0.500009 | 8_4:+45009491 | None:intergenic |
| TATTCTTAAGGGAAGAGCTA+AGG | 0.506921 | 8_4:-45007959 | Msa1327670:CDS |
| TTTCAGCTTCTTCACATGAA+AGG | 0.522846 | 8_4:-45011257 | Msa1327670:CDS |
| CATAGATTGTTCAATAAACT+AGG | 0.523528 | 8_4:-45007880 | Msa1327670:CDS |
| CTGAGCCAGGGGAATTGAAA+AGG | 0.526681 | 8_4:-45011182 | Msa1327670:intron |
| CCACTAGTGAGTACTGAGCC+AGG | 0.527168 | 8_4:-45011195 | Msa1327670:CDS |
| ATTCTTAAGGGAAGAGCTAA+GGG | 0.536166 | 8_4:-45007958 | Msa1327670:CDS |
| CATCTAGCAAAACCGTATTG+AGG | 0.544362 | 8_4:+45009490 | None:intergenic |
| CATTCCTTCTTACTACATGT+AGG | 0.547755 | 8_4:-45007824 | None:intergenic |
| CTACATGTAGTAAGAAGGAA+TGG | 0.549868 | 8_4:+45007825 | None:intergenic |
| ATTAGAAGCACTAAGTACTT+GGG | 0.550691 | 8_4:-45007988 | Msa1327670:CDS |
| GATGAAATCCTTTCATCCAA+TGG | 0.555797 | 8_4:+45011294 | None:intergenic |
| GTCACCTACATGTAGTAAGA+AGG | 0.569549 | 8_4:+45007820 | None:intergenic |
| GGGGCGAGTCTAGTGCGTCC+AGG | 0.582854 | 8_4:-45009468 | Msa1327670:CDS |
| CCTGGCTCAGTACTCACTAG+TGG | 0.587662 | 8_4:+45011195 | None:intergenic |
| CACTAGTGAGTACTGAGCCA+GGG | 0.593056 | 8_4:-45011194 | Msa1327670:CDS |
| CAGTCGTCGAAAAGATCGAA+AGG | 0.602125 | 8_4:-45009523 | Msa1327670:CDS |
| TTCATGTGTTGATAGGTGAA+AGG | 0.610044 | 8_4:-45009597 | Msa1327670:intron |
| AGTGCTTCTAATGCTAGTGA+TGG | 0.620943 | 8_4:+45007999 | None:intergenic |
| CCAGAGACGCCACCCAGAGG+AGG | 0.621794 | 8_4:-45009559 | Msa1327670:CDS |
| CCCAGAGGAGGAAAAGAACG+AGG | 0.627011 | 8_4:-45009547 | Msa1327670:CDS |
| TAAGAAAACAAGCTTTGGAG+AGG | 0.633132 | 8_4:-45011494 | Msa1327670:CDS |
| CATGTAGTAAGAAGGAATGG+AGG | 0.653958 | 8_4:+45007828 | None:intergenic |
| TGATAGGTGAAAGGAGAACG+AGG | 0.657845 | 8_4:-45009588 | Msa1327670:intron |
| ACTAGTGAGTACTGAGCCAG+GGG | 0.660813 | 8_4:-45011193 | Msa1327670:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTTATTGAAAATAAACATTT+CGG | - | chr8_4:45009326-45009345 | Msa1327670:intron | 10.0% |
| !!! | TACTTATTTTTATATTTTGA+GGG | + | chr8_4:45010793-45010812 | None:intergenic | 10.0% |
| !!! | ACCTTTTTATAAAATATTTA+TGG | + | chr8_4:45010984-45011003 | None:intergenic | 10.0% |
| !!! | TTTTATTATGGAAGAAATTT+TGG | + | chr8_4:45007902-45007921 | None:intergenic | 15.0% |
| !!! | GTTTTTTTCTTATACATTAT+TGG | - | chr8_4:45008299-45008318 | Msa1327670:intron | 15.0% |
| !! | TTAAATTTCTTAATGTTGTA+TGG | + | chr8_4:45008524-45008543 | None:intergenic | 15.0% |
| !!! | TATTGAAATTATTTTAGCAA+TGG | + | chr8_4:45008560-45008579 | None:intergenic | 15.0% |
| !!! | AAATAATTTAAAACTGAAAG+TGG | + | chr8_4:45009025-45009044 | None:intergenic | 15.0% |
| !! | AAATATAATCACAATTAAGA+TGG | - | chr8_4:45009152-45009171 | Msa1327670:intron | 15.0% |
| !!! | GTATGTATATGTTTTTTTTT+TGG | + | chr8_4:45010221-45010240 | None:intergenic | 15.0% |
| !!! | CATTCTTTTATTTATAGATA+AGG | + | chr8_4:45010577-45010596 | None:intergenic | 15.0% |
| !! | ATCTATAAATAAAAGAATGT+TGG | - | chr8_4:45010578-45010597 | Msa1327670:intron | 15.0% |
| !!! | GTACTTATTTTTATATTTTG+AGG | + | chr8_4:45010794-45010813 | None:intergenic | 15.0% |
| !! | ATCTTCAAAAACTATTTAAA+AGG | - | chr8_4:45010848-45010867 | Msa1327670:intron | 15.0% |
| !!! | TTTGTAGCTATTATTTTTTA+AGG | - | chr8_4:45010880-45010899 | Msa1327670:intron | 15.0% |
| !!! | GCCATAAATATTTTATAAAA+AGG | - | chr8_4:45010980-45010999 | Msa1327670:intron | 15.0% |
| !!! | CTTTCTTGAAGATTTTATTA+TGG | + | chr8_4:45007914-45007933 | None:intergenic | 20.0% |
| !! | TATAATGAAATGATATTGCA+TGG | + | chr8_4:45008223-45008242 | None:intergenic | 20.0% |
| !!! | TTAGAGTTTTAATACTAAGT+AGG | - | chr8_4:45008475-45008494 | Msa1327670:intron | 20.0% |
| !! | AAATAAACATTTCGGTTAAA+TGG | - | chr8_4:45009334-45009353 | Msa1327670:intron | 20.0% |
| !! | AGGATAATTAATATAGTTGT+TGG | - | chr8_4:45009448-45009467 | Msa1327670:intron | 20.0% |
| !! | ATAATTAATATAGTTGTTGG+TGG | - | chr8_4:45009451-45009470 | Msa1327670:intron | 20.0% |
| !!! | GCTAAAACTATTAAAGTATT+TGG | - | chr8_4:45010063-45010082 | Msa1327670:intron | 20.0% |
| !! | ACTTTCATAAAAATATTGCA+TGG | - | chr8_4:45010269-45010288 | Msa1327670:intron | 20.0% |
| !!! | TGGAAAGTATTAATTTTCTT+AGG | - | chr8_4:45010415-45010434 | Msa1327670:intron | 20.0% |
| !! | AATTTCAAAGTTGAAAAAGA+TGG | + | chr8_4:45010637-45010656 | None:intergenic | 20.0% |
| !! | AAATTACTACACAAATAACA+TGG | - | chr8_4:45010652-45010671 | Msa1327670:intron | 20.0% |
| !! | TCAAAAACTATTTAAAAGGA+AGG | - | chr8_4:45010852-45010871 | Msa1327670:intron | 20.0% |
| !!! | TTCAATGTTTTGTAAGTTTT+GGG | + | chr8_4:45011245-45011264 | None:intergenic | 20.0% |
| !!! | TTTCAATGTTTTGTAAGTTT+TGG | + | chr8_4:45011246-45011265 | None:intergenic | 20.0% |
| !!! | AAATTAATTTGTCTAAGTCT+AGG | - | chr8_4:45011264-45011283 | Msa1327670:CDS | 20.0% |
| !!! | AATTAATTTGTCTAAGTCTA+GGG | - | chr8_4:45011265-45011284 | Msa1327670:CDS | 20.0% |
| !!! | AAGTCTATTTATTTTTGCTT+CGG | + | chr8_4:45011312-45011331 | None:intergenic | 20.0% |
| ! | AAATGTAAGAAAACAAGCTT+TGG | - | chr8_4:45007836-45007855 | Msa1327670:CDS | 25.0% |
| ! | GTCAAATATGTATCATATTG+CGG | + | chr8_4:45008422-45008441 | None:intergenic | 25.0% |
| ! | TTGATATTGCGAAAAAATTG+CGG | + | chr8_4:45008444-45008463 | None:intergenic | 25.0% |
| ! | TATGGTAAAGTATATGACAA+TGG | + | chr8_4:45008506-45008525 | None:intergenic | 25.0% |
| ! | AGCTCAAAACAACTAATTAA+TGG | + | chr8_4:45008623-45008642 | None:intergenic | 25.0% |
| ! | AGTACAAATTAATGCTAAGT+TGG | + | chr8_4:45008770-45008789 | None:intergenic | 25.0% |
| ! | TCCTATTTATAGGAGAAATT+TGG | - | chr8_4:45008798-45008817 | Msa1327670:intron | 25.0% |
| ! | CCTATTTATAGGAGAAATTT+GGG | - | chr8_4:45008799-45008818 | Msa1327670:intron | 25.0% |
| ! | TCAACAAAAGTGAATGTATT+TGG | + | chr8_4:45008861-45008880 | None:intergenic | 25.0% |
| ! | CCTATTTATAAGAGAAAGTT+AGG | + | chr8_4:45008884-45008903 | None:intergenic | 25.0% |
| ! | CCTAACTTTCTCTTATAAAT+AGG | - | chr8_4:45008881-45008900 | Msa1327670:intron | 25.0% |
| !! | AATTTAAAACTGAAAGTGGT+AGG | + | chr8_4:45009021-45009040 | None:intergenic | 25.0% |
| ! | GACTTGAGTAATTTATTCTT+GGG | + | chr8_4:45009201-45009220 | None:intergenic | 25.0% |
| ! | TGACTTGAGTAATTTATTCT+TGG | + | chr8_4:45009202-45009221 | None:intergenic | 25.0% |
| !! | CGATTTGATAATCATTAGTT+TGG | + | chr8_4:45009235-45009254 | None:intergenic | 25.0% |
| !!! | GTTTTTTTTTTGGTACAAAG+CGG | + | chr8_4:45010211-45010230 | None:intergenic | 25.0% |
| !! | TATGAAAGTGTGAACTTAAA+AGG | + | chr8_4:45010258-45010277 | None:intergenic | 25.0% |
| ! | CATGGAAGAAAAATTCTAAA+AGG | - | chr8_4:45010287-45010306 | Msa1327670:intron | 25.0% |
| !! | GAAGAAAAATTCTAAAAGGA+AGG | - | chr8_4:45010291-45010310 | Msa1327670:intron | 25.0% |
| !! | AAAATTCTAAAAGGAAGGAA+AGG | - | chr8_4:45010296-45010315 | Msa1327670:intron | 25.0% |
| ! | CCATTATCATTATCATGTAT+GGG | + | chr8_4:45010725-45010744 | None:intergenic | 25.0% |
| ! | ACCATTATCATTATCATGTA+TGG | + | chr8_4:45010726-45010745 | None:intergenic | 25.0% |
| !!! | AGCTATTATTTTTTAAGGAG+CGG | - | chr8_4:45010885-45010904 | Msa1327670:intron | 25.0% |
| !!! | TAGGGGTATTTGTTTATTTT+AGG | - | chr8_4:45011096-45011115 | Msa1327670:intron | 25.0% |
| !! | TCAATGTTTTGTAAGTTTTG+GGG | + | chr8_4:45011244-45011263 | None:intergenic | 25.0% |
| !!! | AGTCTATTTATTTTTGCTTC+GGG | + | chr8_4:45011311-45011330 | None:intergenic | 25.0% |
| ! | CATAGATTGTTCAATAAACT+AGG | - | chr8_4:45011455-45011474 | Msa1327670:CDS | 25.0% |
| !!! | TGCTTTTTTGAAGTCCAATA+GGG | + | chr8_4:45007941-45007960 | None:intergenic | 30.0% |
| AACTGGATCACAAAAAATAG+TGG | - | chr8_4:45008179-45008198 | Msa1327670:intron | 30.0% | |
| CATTAAGATTGAATATGCCA+CGG | - | chr8_4:45008322-45008341 | Msa1327670:intron | 30.0% | |
| !!! | GCAATTTTTTCGCAATATCA+AGG | - | chr8_4:45008443-45008462 | Msa1327670:intron | 30.0% |
| TGTGCACAAAAAAAATCTGA+AGG | - | chr8_4:45008692-45008711 | Msa1327670:intron | 30.0% | |
| ATTTCTCCTATAAATAGGAC+CGG | + | chr8_4:45008797-45008816 | None:intergenic | 30.0% | |
| CCCAAATTTCTCCTATAAAT+AGG | + | chr8_4:45008802-45008821 | None:intergenic | 30.0% | |
| CTTTCTCTTATAAATAGGAC+CGG | - | chr8_4:45008886-45008905 | Msa1327670:intron | 30.0% | |
| GCAAAATTTAATACTCTCTC+CGG | + | chr8_4:45008908-45008927 | None:intergenic | 30.0% | |
| ! | ATTTTGCAATACCAACATAG+CGG | - | chr8_4:45008921-45008940 | Msa1327670:intron | 30.0% |
| AACTGATAATAGCTAGTTGT+AGG | + | chr8_4:45009061-45009080 | None:intergenic | 30.0% | |
| CAGTGTTTCGAAACAATTTA+TGG | - | chr8_4:45009097-45009116 | Msa1327670:intron | 30.0% | |
| CGAGTTATATACCTAGTTTA+TGG | + | chr8_4:45009270-45009289 | None:intergenic | 30.0% | |
| !!! | AGTGTTTTTGCTTTTTCTCT+TGG | - | chr8_4:45009570-45009589 | Msa1327670:CDS | 30.0% |
| ! | AATCCAATTCATGTGTTGAT+AGG | - | chr8_4:45009731-45009750 | Msa1327670:intron | 30.0% |
| TAAGAAGCTTCCGAAAAATT+AGG | - | chr8_4:45010012-45010031 | Msa1327670:intron | 30.0% | |
| ATGATAATCTTGTAGGAGTT+GGG | + | chr8_4:45010100-45010119 | None:intergenic | 30.0% | |
| AATGATAATCTTGTAGGAGT+TGG | + | chr8_4:45010101-45010120 | None:intergenic | 30.0% | |
| AACTCCTACAAGATTATCAT+TGG | - | chr8_4:45010100-45010119 | Msa1327670:intron | 30.0% | |
| ACTCCTACAAGATTATCATT+GGG | - | chr8_4:45010101-45010120 | Msa1327670:intron | 30.0% | |
| CTTTACTTTACCCTTATAGA+TGG | + | chr8_4:45010130-45010149 | None:intergenic | 30.0% | |
| CATCTATAAGGGTAAAGTAA+AGG | - | chr8_4:45010128-45010147 | Msa1327670:intron | 30.0% | |
| ! | TTAAAAGGTATGCAAATGAG+CGG | + | chr8_4:45010243-45010262 | None:intergenic | 30.0% |
| !!! | ATTTTTTAAGTGCACAAGTG+AGG | - | chr8_4:45010335-45010354 | Msa1327670:intron | 30.0% |
| !!! | TTTTTTAAGTGCACAAGTGA+GGG | - | chr8_4:45010336-45010355 | Msa1327670:intron | 30.0% |
| AAGCCTTAACTTTAATGGAA+CGG | - | chr8_4:45010499-45010518 | Msa1327670:intron | 30.0% | |
| ! | TAGAGTTTTCCATTCCATTA+AGG | + | chr8_4:45010533-45010552 | None:intergenic | 30.0% |
| TACTACACAAATAACATGGA+TGG | - | chr8_4:45010656-45010675 | Msa1327670:intron | 30.0% | |
| TCATTATCATGTATGGGATT+TGG | + | chr8_4:45010719-45010738 | None:intergenic | 30.0% | |
| ! | CCCATACATGATAATGATAA+TGG | - | chr8_4:45010722-45010741 | Msa1327670:intron | 30.0% |
| GGCATCAAAAAATTCAACAT+CGG | + | chr8_4:45010963-45010982 | None:intergenic | 30.0% | |
| !!! | GGGTATTTGTTTATTTTAGG+CGG | - | chr8_4:45011099-45011118 | Msa1327670:intron | 30.0% |
| ! | AGATTTCTAGAAGCTTAGAA+CGG | - | chr8_4:45011129-45011148 | Msa1327670:intron | 30.0% |
| !!! | AATGTTTTGTAAGTTTTGGG+GGG | + | chr8_4:45011242-45011261 | None:intergenic | 30.0% |
| !! | CAATGTTTTGTAAGTTTTGG+GGG | + | chr8_4:45011243-45011262 | None:intergenic | 30.0% |
| !! | ATTAGAAGCACTAAGTACTT+GGG | - | chr8_4:45011347-45011366 | Msa1327670:CDS | 30.0% |
| ! | TTGGGTTTTCCTATTCTTAA+GGG | - | chr8_4:45011365-45011384 | Msa1327670:CDS | 30.0% |
| TAAACTAGGTAGAGTAACTT+TGG | - | chr8_4:45011469-45011488 | Msa1327670:CDS | 30.0% | |
| !! | TAAGAAAACAAGCTTTGGAG+AGG | - | chr8_4:45007841-45007860 | Msa1327670:CDS | 35.0% |
| ! | TTCAAGAAAGTGTACCCTAT+TGG | - | chr8_4:45007924-45007943 | Msa1327670:CDS | 35.0% |
| !!! | GTGCTTTTTTGAAGTCCAAT+AGG | + | chr8_4:45007942-45007961 | None:intergenic | 35.0% |
| GATGAAATCCTTTCATCCAA+TGG | + | chr8_4:45008044-45008063 | None:intergenic | 35.0% | |
| TTTCAGCTTCTTCACATGAA+AGG | - | chr8_4:45008078-45008097 | Msa1327670:intron | 35.0% | |
| !!! | TATGCCACGGTTTTAGAAAA+TGG | - | chr8_4:45008335-45008354 | Msa1327670:intron | 35.0% |
| !!! | CATACCATTTTCTAAAACCG+TGG | + | chr8_4:45008342-45008361 | None:intergenic | 35.0% |
| TGGTATGTGATAAGTGTGTT+AGG | - | chr8_4:45008355-45008374 | Msa1327670:intron | 35.0% | |
| GGTATGTGATAAGTGTGTTA+GGG | - | chr8_4:45008356-45008375 | Msa1327670:intron | 35.0% | |
| CTGCTTCACATCATTTCTAT+TGG | - | chr8_4:45008641-45008660 | Msa1327670:intron | 35.0% | |
| !! | GCATTAATTTGTACTTCCTC+CGG | - | chr8_4:45008775-45008794 | Msa1327670:intron | 35.0% |
| ATTAAGTGTAACCGCTATGT+TGG | + | chr8_4:45008935-45008954 | None:intergenic | 35.0% | |
| AGATGGCATTAATCTCAATC+AGG | - | chr8_4:45009169-45009188 | Msa1327670:intron | 35.0% | |
| !! | CGCTTTGTTTACCATAAACT+AGG | - | chr8_4:45009256-45009275 | Msa1327670:intron | 35.0% |
| ! | TTTTTGCGAGCAATATTGAC+AGG | + | chr8_4:45009639-45009658 | None:intergenic | 35.0% |
| ACTGAAATAAGCAGTCAGAA+TGG | - | chr8_4:45009661-45009680 | Msa1327670:intron | 35.0% | |
| CTGAAATAAGCAGTCAGAAT+GGG | - | chr8_4:45009662-45009681 | Msa1327670:intron | 35.0% | |
| TCACCTATCAACACATGAAT+TGG | + | chr8_4:45009737-45009756 | None:intergenic | 35.0% | |
| ! | TTCATGTGTTGATAGGTGAA+AGG | - | chr8_4:45009738-45009757 | Msa1327670:CDS | 35.0% |
| ATCTAGCAAAACCGTATTGA+GGG | + | chr8_4:45009847-45009866 | None:intergenic | 35.0% | |
| ! | TCAATACGGTTTTGCTAGAT+GGG | - | chr8_4:45009847-45009866 | Msa1327670:intron | 35.0% |
| TTGAAAATGTGAAGACGATG+GGG | + | chr8_4:45009937-45009956 | None:intergenic | 35.0% | |
| CTTGAAAATGTGAAGACGAT+GGG | + | chr8_4:45009938-45009957 | None:intergenic | 35.0% | |
| ACTTGAAAATGTGAAGACGA+TGG | + | chr8_4:45009939-45009958 | None:intergenic | 35.0% | |
| !! | ATCGTCTTCACATTTTCAAG+TGG | - | chr8_4:45009938-45009957 | Msa1327670:intron | 35.0% |
| !!! | TCGTCTTCACATTTTCAAGT+GGG | - | chr8_4:45009939-45009958 | Msa1327670:intron | 35.0% |
| ! | TGGAGCAAGACCTAATTTTT+CGG | + | chr8_4:45010025-45010044 | None:intergenic | 35.0% |
| AAAATTAGGTCTTGCTCCAT+TGG | - | chr8_4:45010026-45010045 | Msa1327670:intron | 35.0% | |
| TCCTAGTATACAAAGACGTT+GGG | + | chr8_4:45010395-45010414 | None:intergenic | 35.0% | |
| ATCCTAGTATACAAAGACGT+TGG | + | chr8_4:45010396-45010415 | None:intergenic | 35.0% | |
| AACGTCTTTGTATACTAGGA+TGG | - | chr8_4:45010395-45010414 | Msa1327670:intron | 35.0% | |
| CCATTAAAGTTAAGGCTTCA+AGG | + | chr8_4:45010497-45010516 | None:intergenic | 35.0% | |
| CCTTGAAGCCTTAACTTTAA+TGG | - | chr8_4:45010494-45010513 | Msa1327670:intron | 35.0% | |
| TCTCCGTTCCATTAAAGTTA+AGG | + | chr8_4:45010505-45010524 | None:intergenic | 35.0% | |
| GAGATTCAACCTTAATGGAA+TGG | - | chr8_4:45010521-45010540 | Msa1327670:intron | 35.0% | |
| GAAAACTCTACATCACTACT+GGG | - | chr8_4:45010543-45010562 | Msa1327670:intron | 35.0% | |
| ! | ATCTATGAGTATGGATTGTG+GGG | + | chr8_4:45010611-45010630 | None:intergenic | 35.0% |
| ! | GATCTATGAGTATGGATTGT+GGG | + | chr8_4:45010612-45010631 | None:intergenic | 35.0% |
| ! | TGATCTATGAGTATGGATTG+TGG | + | chr8_4:45010613-45010632 | None:intergenic | 35.0% |
| AGATGGTTGATCTATGAGTA+TGG | + | chr8_4:45010620-45010639 | None:intergenic | 35.0% | |
| ACACAAATAACATGGATGGA+TGG | - | chr8_4:45010660-45010679 | Msa1327670:intron | 35.0% | |
| CACAAATAACATGGATGGAT+GGG | - | chr8_4:45010661-45010680 | Msa1327670:intron | 35.0% | |
| ACAAATAACATGGATGGATG+GGG | - | chr8_4:45010662-45010681 | Msa1327670:intron | 35.0% | |
| ! | TACTTGCAAAAGCACACTAA+GGG | - | chr8_4:45011009-45011028 | Msa1327670:intron | 35.0% |
| AGTAGTATTTATAGCCTCCT+TGG | - | chr8_4:45011058-45011077 | Msa1327670:intron | 35.0% | |
| ! | TTTATAGCCTCCTTGGATTT+TGG | - | chr8_4:45011065-45011084 | Msa1327670:intron | 35.0% |
| TACCAAACAACCAAAATCCA+AGG | + | chr8_4:45011078-45011097 | None:intergenic | 35.0% | |
| !!! | TTGGATTTTGGTTGTTTGGT+AGG | - | chr8_4:45011077-45011096 | Msa1327670:intron | 35.0% |
| !!! | TGGATTTTGGTTGTTTGGTA+GGG | - | chr8_4:45011078-45011097 | Msa1327670:intron | 35.0% |
| !! | CATTAGAAGCACTAAGTACT+TGG | - | chr8_4:45011346-45011365 | Msa1327670:CDS | 35.0% |
| ! | CTTGGGTTTTCCTATTCTTA+AGG | - | chr8_4:45011364-45011383 | Msa1327670:CDS | 35.0% |
| ! | TTAGCTCTTCCCTTAAGAAT+AGG | + | chr8_4:45011377-45011396 | None:intergenic | 35.0% |
| TATTCTTAAGGGAAGAGCTA+AGG | - | chr8_4:45011376-45011395 | Msa1327670:CDS | 35.0% | |
| ATTCTTAAGGGAAGAGCTAA+GGG | - | chr8_4:45011377-45011396 | Msa1327670:CDS | 35.0% | |
| GAACAATCTATGCTTCCAAA+AGG | + | chr8_4:45011447-45011466 | None:intergenic | 35.0% | |
| CTACATGTAGTAAGAAGGAA+TGG | + | chr8_4:45011513-45011532 | None:intergenic | 35.0% | |
| ! | AGCTGATTCTTTGACTCCAT+TGG | - | chr8_4:45008025-45008044 | Msa1327670:CDS | 40.0% |
| CTTTGACTCCATTGGATGAA+AGG | - | chr8_4:45008033-45008052 | Msa1327670:CDS | 40.0% | |
| TATATAACTCGTGCGTTGCA+CGG | - | chr8_4:45009279-45009298 | Msa1327670:intron | 40.0% | |
| ! | TTCTTTTCGATCAGAGCTAG+AGG | - | chr8_4:45009602-45009621 | Msa1327670:intron | 40.0% |
| CATCTAGCAAAACCGTATTG+AGG | + | chr8_4:45009848-45009867 | None:intergenic | 40.0% | |
| ! | CTCAATACGGTTTTGCTAGA+TGG | - | chr8_4:45009846-45009865 | Msa1327670:intron | 40.0% |
| ! | CAATACGGTTTTGCTAGATG+GGG | - | chr8_4:45009848-45009867 | Msa1327670:intron | 40.0% |
| GGATGTGAAAAGAGTCCTAA+TGG | - | chr8_4:45009960-45009979 | Msa1327670:intron | 40.0% | |
| ! | AAAAGAGTCCTAATGGATCG+AGG | - | chr8_4:45009967-45009986 | Msa1327670:intron | 40.0% |
| TCGCCCAATGATAATCTTGT+AGG | + | chr8_4:45010107-45010126 | None:intergenic | 40.0% | |
| AGGGTAAAGTAAAGGAACCT+TGG | - | chr8_4:45010136-45010155 | Msa1327670:intron | 40.0% | |
| CTATTGAACTCTTCATGCCA+AGG | + | chr8_4:45010156-45010175 | None:intergenic | 40.0% | |
| ! | GGGTGAGATCCAAACTTTTT+CGG | - | chr8_4:45010356-45010375 | Msa1327670:intron | 40.0% |
| !!! | GATCCAAACTTTTTCGGATG+AGG | - | chr8_4:45010362-45010381 | Msa1327670:intron | 40.0% |
| ACCCAACGTCTTTGTATACT+AGG | - | chr8_4:45010391-45010410 | Msa1327670:intron | 40.0% | |
| TTCTTAGGAGTGAGATGTAG+TGG | - | chr8_4:45010430-45010449 | Msa1327670:intron | 40.0% | |
| TCTTAGGAGTGAGATGTAGT+GGG | - | chr8_4:45010431-45010450 | Msa1327670:intron | 40.0% | |
| ATGGGGAAATATTCCACACA+TGG | - | chr8_4:45010464-45010483 | Msa1327670:intron | 40.0% | |
| TGGGGAAATATTCCACACAT+GGG | - | chr8_4:45010465-45010484 | Msa1327670:intron | 40.0% | |
| GAACGGAGATTCAACCTTAA+TGG | - | chr8_4:45010516-45010535 | Msa1327670:intron | 40.0% | |
| GGAAAACTCTACATCACTAC+TGG | - | chr8_4:45010542-45010561 | Msa1327670:intron | 40.0% | |
| !!! | AGGAGCGGCTCATTTTTTAA+TGG | - | chr8_4:45010900-45010919 | Msa1327670:intron | 40.0% |
| !!! | GGAGCGGCTCATTTTTTAAT+GGG | - | chr8_4:45010901-45010920 | Msa1327670:intron | 40.0% |
| TGGGTGGCTAATATATAGAG+AGG | - | chr8_4:45010920-45010939 | Msa1327670:intron | 40.0% | |
| GGGTGGCTAATATATAGAGA+GGG | - | chr8_4:45010921-45010940 | Msa1327670:intron | 40.0% | |
| GGTGGCTAATATATAGAGAG+GGG | - | chr8_4:45010922-45010941 | Msa1327670:intron | 40.0% | |
| ! | GTACTTGCAAAAGCACACTA+AGG | - | chr8_4:45011008-45011027 | Msa1327670:intron | 40.0% |
| AAAGCACACTAAGGGATTCT+AGG | - | chr8_4:45011017-45011036 | Msa1327670:intron | 40.0% | |
| AAGCACACTAAGGGATTCTA+GGG | - | chr8_4:45011018-45011037 | Msa1327670:intron | 40.0% | |
| CAAACAACCAAAATCCAAGG+AGG | + | chr8_4:45011075-45011094 | None:intergenic | 40.0% | |
| !!! | CTCCTTGGATTTTGGTTGTT+TGG | - | chr8_4:45011073-45011092 | Msa1327670:intron | 40.0% |
| !!! | GGATTTTGGTTGTTTGGTAG+GGG | - | chr8_4:45011079-45011098 | Msa1327670:intron | 40.0% |
| ! | TTTCTAGAAGCTTAGAACGG+CGG | - | chr8_4:45011132-45011151 | Msa1327670:intron | 40.0% |
| ! | ATGAGAGCGATAAGAGTATG+AGG | + | chr8_4:45011206-45011225 | None:intergenic | 40.0% |
| ! | TCTAGGGCTTTCTACTCTTT+AGG | - | chr8_4:45011281-45011300 | Msa1327670:CDS | 40.0% |
| AGTGCTTCTAATGCTAGTGA+TGG | + | chr8_4:45011339-45011358 | None:intergenic | 40.0% | |
| !!! | TGCAATCTAGACTAGCCTTT+TGG | - | chr8_4:45011429-45011448 | Msa1327670:CDS | 40.0% |
| GTAAGAAGGAATGGAGGAAA+TGG | + | chr8_4:45011504-45011523 | None:intergenic | 40.0% | |
| CATGTAGTAAGAAGGAATGG+AGG | + | chr8_4:45011510-45011529 | None:intergenic | 40.0% | |
| ! | TTGCACCTTTTCAATTCCCC+TGG | + | chr8_4:45008161-45008180 | None:intergenic | 45.0% |
| ! | GGGAATTGAAAAGGTGCAAC+TGG | - | chr8_4:45008162-45008181 | Msa1327670:intron | 45.0% |
| CTTCCTCCGGTCCTATTTAT+AGG | - | chr8_4:45008788-45008807 | Msa1327670:intron | 45.0% | |
| TCTCCTATAAATAGGACCGG+AGG | + | chr8_4:45008794-45008813 | None:intergenic | 45.0% | |
| GCTAGTTGTAGGTAAGCACA+AGG | + | chr8_4:45009050-45009069 | None:intergenic | 45.0% | |
| ATATAACTCGTGCGTTGCAC+GGG | - | chr8_4:45009280-45009299 | Msa1327670:intron | 45.0% | |
| TGATAGGTGAAAGGAGAACG+AGG | - | chr8_4:45009747-45009766 | Msa1327670:CDS | 45.0% | |
| CAGTCGTCGAAAAGATCGAA+AGG | - | chr8_4:45009812-45009831 | Msa1327670:intron | 45.0% | |
| GCAAAACCGTATTGAGGGTA+TGG | + | chr8_4:45009842-45009861 | None:intergenic | 45.0% | |
| ! | AAGAAGTACGTAGACAGGTG+AGG | - | chr8_4:45009890-45009909 | Msa1327670:intron | 45.0% |
| CTGAACTTCCTCGATCCATT+AGG | + | chr8_4:45009978-45009997 | None:intergenic | 45.0% | |
| ATTAGGTCTTGCTCCATTGG+TGG | - | chr8_4:45010029-45010048 | Msa1327670:intron | 45.0% | |
| TTAGGTCTTGCTCCATTGGT+GGG | - | chr8_4:45010030-45010049 | Msa1327670:intron | 45.0% | |
| !! | TTGCTCCATTGGTGGGTTTA+TGG | - | chr8_4:45010037-45010056 | Msa1327670:intron | 45.0% |
| !! | TGCTCCATTGGTGGGTTTAT+GGG | - | chr8_4:45010038-45010057 | Msa1327670:intron | 45.0% |
| TCATTGGGCGACCATCTATA+AGG | - | chr8_4:45010116-45010135 | Msa1327670:intron | 45.0% | |
| CATTGGGCGACCATCTATAA+GGG | - | chr8_4:45010117-45010136 | Msa1327670:intron | 45.0% | |
| GCACCTCATCCGAAAAAGTT+TGG | + | chr8_4:45010368-45010387 | None:intergenic | 45.0% | |
| ! | TGTAGTGGGAACAAGCAAGA+TGG | - | chr8_4:45010445-45010464 | Msa1327670:intron | 45.0% |
| ! | GTAGTGGGAACAAGCAAGAT+GGG | - | chr8_4:45010446-45010465 | Msa1327670:intron | 45.0% |
| TAGTGGGAACAAGCAAGATG+GGG | - | chr8_4:45010447-45010466 | Msa1327670:intron | 45.0% | |
| TCAAGGTCAATTCCCATGTG+TGG | + | chr8_4:45010480-45010499 | None:intergenic | 45.0% | |
| ATGGATGGGGAAGAGATCAA+AGG | - | chr8_4:45010675-45010694 | Msa1327670:intron | 45.0% | |
| !!! | GCGGCTCATTTTTTAATGGG+TGG | - | chr8_4:45010904-45010923 | Msa1327670:intron | 45.0% |
| !! | TAAATTATATTAAATATAAG+AGG | - | chr8_4:45009379-45009398 | Msa1327670:intron | 5.0% |
| !! | AAATTATATTAAATATAAGA+GGG | - | chr8_4:45009380-45009399 | Msa1327670:intron | 5.0% |
| !!! | ATATTTGTTAAAATATTTTT+AGG | - | chr8_4:45009428-45009447 | Msa1327670:intron | 5.0% |
| !! | CACTAGTGAGTACTGAGCCA+GGG | - | chr8_4:45008141-45008160 | Msa1327670:intron | 50.0% |
| !! | ACTAGTGAGTACTGAGCCAG+GGG | - | chr8_4:45008142-45008161 | Msa1327670:intron | 50.0% |
| CTGAGCCAGGGGAATTGAAA+AGG | - | chr8_4:45008153-45008172 | Msa1327670:intron | 50.0% | |
| ! | CCTCGTTCTTTTCCTCCTCT+GGG | + | chr8_4:45009791-45009810 | None:intergenic | 50.0% |
| ! | TCCTCGTTCTTTTCCTCCTC+TGG | + | chr8_4:45009792-45009811 | None:intergenic | 50.0% |
| CCTGTCTACGTACTTCTTCC+TGG | + | chr8_4:45009888-45009907 | None:intergenic | 50.0% | |
| ! | CCAGGAAGAAGTACGTAGAC+AGG | - | chr8_4:45009885-45009904 | Msa1327670:intron | 50.0% |
| TACGTAGACAGGTGAGGTGA+GGG | - | chr8_4:45009896-45009915 | Msa1327670:intron | 50.0% | |
| TGTGAAGACGATGGGGTCAT+GGG | + | chr8_4:45009930-45009949 | None:intergenic | 50.0% | |
| ATGTGAAGACGATGGGGTCA+TGG | + | chr8_4:45009931-45009950 | None:intergenic | 50.0% | |
| GCATCCCATAAACCCACCAA+TGG | + | chr8_4:45010045-45010064 | None:intergenic | 50.0% | |
| !! | TTTTGGGGGGTTCACTCTTG+GGG | + | chr8_4:45011229-45011248 | None:intergenic | 50.0% |
| !!! | GTTTTGGGGGGTTCACTCTT+GGG | + | chr8_4:45011230-45011249 | None:intergenic | 50.0% |
| !!! | AGTTTTGGGGGGTTCACTCT+TGG | + | chr8_4:45011231-45011250 | None:intergenic | 50.0% |
| CCTGGCTCAGTACTCACTAG+TGG | + | chr8_4:45008143-45008162 | None:intergenic | 55.0% | |
| !! | CCACTAGTGAGTACTGAGCC+AGG | - | chr8_4:45008140-45008159 | Msa1327670:intron | 55.0% |
| ! | CGTTCTTTTCCTCCTCTGGG+TGG | + | chr8_4:45009788-45009807 | None:intergenic | 55.0% |
| CCCAGAGGAGGAAAAGAACG+AGG | - | chr8_4:45009788-45009807 | Msa1327670:intron | 55.0% | |
| ! | GGAGCGCCATACCCTCAATA+CGG | - | chr8_4:45009833-45009852 | Msa1327670:intron | 55.0% |
| GTACGTAGACAGGTGAGGTG+AGG | - | chr8_4:45009895-45009914 | Msa1327670:intron | 55.0% | |
| GTGAAGACGATGGGGTCATG+GGG | + | chr8_4:45009929-45009948 | None:intergenic | 55.0% | |
| CTTAGAACGGCGGTGCCTTA+AGG | - | chr8_4:45011142-45011161 | Msa1327670:intron | 55.0% | |
| AAGGGCTCCTAAGACTCTCG+CGG | + | chr8_4:45011173-45011192 | None:intergenic | 55.0% | |
| AGTCTTAGGAGCCCTTCTCG+AGG | - | chr8_4:45011177-45011196 | Msa1327670:intron | 55.0% | |
| GTCTTAGGAGCCCTTCTCGA+GGG | - | chr8_4:45011178-45011197 | Msa1327670:intron | 55.0% | |
| AGGGCTCCTAAGACTCTCGC+GGG | + | chr8_4:45011172-45011191 | None:intergenic | 60.0% | |
| ! | GTATGAGGCGCCCTCGAGAA+GGG | + | chr8_4:45011191-45011210 | None:intergenic | 60.0% |
| ! | AGTATGAGGCGCCCTCGAGA+AGG | + | chr8_4:45011192-45011211 | None:intergenic | 60.0% |
| TGACCAGAGACGCCACCCAG+AGG | - | chr8_4:45009773-45009792 | Msa1327670:intron | 65.0% | |
| AGACAGGTGAGGTGAGGGCG+TGG | - | chr8_4:45009901-45009920 | Msa1327670:intron | 65.0% | |
| ACTCTCGCGGGCTCGCCTTA+AGG | + | chr8_4:45011160-45011179 | None:intergenic | 65.0% | |
| CCTCCTCTGGGTGGCGTCTC+TGG | + | chr8_4:45009779-45009798 | None:intergenic | 70.0% | |
| CCAGAGACGCCACCCAGAGG+AGG | - | chr8_4:45009776-45009795 | Msa1327670:intron | 70.0% | |
| GGGGCGAGTCTAGTGCGTCC+AGG | - | chr8_4:45009867-45009886 | Msa1327670:intron | 70.0% | |
| GGCGAGCCCGCGAGAGTCTT+AGG | - | chr8_4:45011163-45011182 | Msa1327670:intron | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 45007825 | 45011532 | 45007825 | ID=Msa1327670;Name=Msa1327670 |
| chr8_4 | mRNA | 45007825 | 45011532 | 45007825 | ID=Msa1327670-mRNA-1;Parent=Msa1327670;Name=Msa1327670-mRNA-1;_AED=0.53;_eAED=0.86;_QI=0|0|0|0.5|1|1|4|0|257 |
| chr8_4 | exon | 45011183 | 45011532 | 45011183 | ID=Msa1327670-mRNA-1:exon:12616;Parent=Msa1327670-mRNA-1 |
| chr8_4 | exon | 45009734 | 45009785 | 45009734 | ID=Msa1327670-mRNA-1:exon:12615;Parent=Msa1327670-mRNA-1 |
| chr8_4 | exon | 45009463 | 45009604 | 45009463 | ID=Msa1327670-mRNA-1:exon:12614;Parent=Msa1327670-mRNA-1 |
| chr8_4 | exon | 45007825 | 45008054 | 45007825 | ID=Msa1327670-mRNA-1:exon:12613;Parent=Msa1327670-mRNA-1 |
| chr8_4 | CDS | 45011183 | 45011532 | 45011183 | ID=Msa1327670-mRNA-1:cds;Parent=Msa1327670-mRNA-1 |
| chr8_4 | CDS | 45009734 | 45009785 | 45009734 | ID=Msa1327670-mRNA-1:cds;Parent=Msa1327670-mRNA-1 |
| chr8_4 | CDS | 45009463 | 45009604 | 45009463 | ID=Msa1327670-mRNA-1:cds;Parent=Msa1327670-mRNA-1 |
| chr8_4 | CDS | 45007825 | 45008054 | 45007825 | ID=Msa1327670-mRNA-1:cds;Parent=Msa1327670-mRNA-1 |
| Gene Sequence |
| Protein sequence |
