Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1328620 | Msa1394840 | 0.844157 | 8.994567e-59 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 30 sgRNAs with CRISPR-Local
Find 266 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATAATTAGAAAAGACATAAA+TGG | 0.253654 | 8_4:-46502267 | Msa1328610:intron |
| GAAAAGACATAAATGGATTT+AGG | 0.260513 | 8_4:-46502260 | Msa1328610:intron |
| TAGGTCCTTGCACCTCTTTA+AGG | 0.264170 | 8_4:-46502241 | Msa1328610:intron |
| CCAGAAACCGGATGAATAAA+AGG | 0.303553 | 8_4:+46500359 | Msa1328620:CDS |
| TCAGTCTTTCCAACGTGGCC+TGG | 0.340763 | 8_4:-46499874 | Msa1328610:intron |
| CTTCATTGCGAATTACCTTC+TGG | 0.390592 | 8_4:-46499976 | Msa1328610:intron |
| AGCCGATGCTGTGCTTCTCT+TGG | 0.404494 | 8_4:+46499931 | Msa1328620:CDS |
| TCTGGTCACCATCGAAATCT+AGG | 0.412469 | 8_4:-46499958 | Msa1328610:intron |
| CTGTGTTAAGGATCAAGATC+AGG | 0.433650 | 8_4:+46502211 | Msa1328620:CDS |
| CAGTCTTTCCAACGTGGCCT+GGG | 0.446506 | 8_4:-46499873 | Msa1328610:intron |
| GAGAATACAGAACTGTGTTA+AGG | 0.483178 | 8_4:+46502199 | Msa1328620:CDS |
| AAAGCTCGTTCTAAGATTGA+AGG | 0.488052 | 8_4:+46500208 | Msa1328620:CDS |
| GAATTGATCAAGCCAGAAAC+CGG | 0.491584 | 8_4:+46500347 | Msa1328620:CDS |
| AGAATGGTTGAACGAATTTG+AGG | 0.512633 | 8_4:+46500153 | Msa1328620:CDS |
| GAATGGTTGAACGAATTTGA+GGG | 0.518119 | 8_4:+46500154 | Msa1328620:CDS |
| TTGGACTTCCTAGATTTCGA+TGG | 0.550550 | 8_4:+46499950 | Msa1328620:CDS |
| ACGCTCAACAAGGGAACAGC+AGG | 0.559806 | 8_4:+46500185 | Msa1328620:CDS |
| GTCCAAGAGAAGCACAGCAT+CGG | 0.567961 | 8_4:-46499933 | Msa1328610:intron |
| TCAGGGAATACTCCTTAAAG+AGG | 0.572376 | 8_4:+46502229 | Msa1328620:CDS |
| TCCTCAGTTCATCATCATTG+CGG | 0.581192 | 8_4:-46500003 | Msa1328610:intron |
| AGATTTCGATGGTGACCAGA+AGG | 0.603610 | 8_4:+46499961 | Msa1328620:CDS |
| AAGCTCGTTCTAAGATTGAA+GGG | 0.606022 | 8_4:+46500209 | Msa1328620:CDS |
| TGTGTTAAGGATCAAGATCA+GGG | 0.614207 | 8_4:+46502212 | Msa1328620:CDS |
| GGAGATCCAACAAAGCAAAG+AGG | 0.642171 | 8_4:-46500042 | Msa1328610:intron |
| ATACTCCTTAAAGAGGTGCA+AGG | 0.653167 | 8_4:+46502236 | Msa1328620:CDS |
| GCGCTCTCAACGCTCAACAA+GGG | 0.666552 | 8_4:+46500176 | Msa1328620:CDS |
| GTGATTCAGTCTTTCCAACG+TGG | 0.675081 | 8_4:-46499879 | Msa1328610:intron |
| TCACATTACCCAGGCCACGT+TGG | 0.675701 | 8_4:+46499865 | Msa1328620:CDS |
| AATGGCTGGTCACATTACCC+AGG | 0.675857 | 8_4:+46499856 | None:intergenic |
| TCCGCAATGATGATGAACTG+AGG | 0.703832 | 8_4:+46500002 | Msa1328620:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATAACTATATTAGATAT+AGG | + | chr8_4:46501276-46501295 | Msa1328620:intron | 10.0% |
| !!! | ATTATTATGATGTTTTTATA+TGG | + | chr8_4:46501652-46501671 | Msa1328620:intron | 10.0% |
| !!! | GATTATTATCATTATTTTAA+GGG | + | chr8_4:46501674-46501693 | Msa1328620:intron | 10.0% |
| !!! | ATTATTATCATTATTTTAAG+GGG | + | chr8_4:46501675-46501694 | Msa1328620:intron | 10.0% |
| !!! | AATTTGAAATAAATAATTTC+AGG | + | chr8_4:46502177-46502196 | Msa1328620:intron | 10.0% |
| !! | TATATAACTATATTAGATAT+AGG | + | chr8_4:46501276-46501295 | Msa1328620:intron | 10.0% |
| !!! | ATTATTATGATGTTTTTATA+TGG | + | chr8_4:46501652-46501671 | Msa1328620:intron | 10.0% |
| !!! | GATTATTATCATTATTTTAA+GGG | + | chr8_4:46501674-46501693 | Msa1328620:intron | 10.0% |
| !!! | ATTATTATCATTATTTTAAG+GGG | + | chr8_4:46501675-46501694 | Msa1328620:intron | 10.0% |
| !!! | AATTTGAAATAAATAATTTC+AGG | + | chr8_4:46502177-46502196 | Msa1328620:intron | 10.0% |
| !! | ATATTTAACTAAATTAAGAG+TGG | - | chr8_4:46501553-46501572 | Msa1328610:intron | 15.0% |
| !! | AATTTAGTTAAATATTGTAG+TGG | + | chr8_4:46501558-46501577 | Msa1328620:intron | 15.0% |
| !!! | GGATTATTATCATTATTTTA+AGG | + | chr8_4:46501673-46501692 | Msa1328620:intron | 15.0% |
| !!! | TTATTATCATTATTTTAAGG+GGG | + | chr8_4:46501676-46501695 | Msa1328620:intron | 15.0% |
| !!! | TTGTTTTTTCTATTCAAAAT+TGG | - | chr8_4:46501801-46501820 | Msa1328610:intron | 15.0% |
| !!! | AGTTTAATTTCTATATTATG+CGG | - | chr8_4:46501847-46501866 | Msa1328610:intron | 15.0% |
| !! | ATAATTAGAAAAGACATAAA+TGG | - | chr8_4:46502270-46502289 | Msa1328610:intron | 15.0% |
| !! | ATATTTAACTAAATTAAGAG+TGG | - | chr8_4:46501553-46501572 | Msa1328610:intron | 15.0% |
| !! | AATTTAGTTAAATATTGTAG+TGG | + | chr8_4:46501558-46501577 | Msa1328620:intron | 15.0% |
| !!! | GGATTATTATCATTATTTTA+AGG | + | chr8_4:46501673-46501692 | Msa1328620:intron | 15.0% |
| !!! | TTATTATCATTATTTTAAGG+GGG | + | chr8_4:46501676-46501695 | Msa1328620:intron | 15.0% |
| !!! | TTGTTTTTTCTATTCAAAAT+TGG | - | chr8_4:46501801-46501820 | Msa1328610:intron | 15.0% |
| !!! | AGTTTAATTTCTATATTATG+CGG | - | chr8_4:46501847-46501866 | Msa1328610:intron | 15.0% |
| !! | ATAATTAGAAAAGACATAAA+TGG | - | chr8_4:46502270-46502289 | Msa1328610:intron | 15.0% |
| !! | AAAAATTTGCAGATGAAATT+CGG | - | chr8_4:46499907-46499926 | Msa1328610:intron | 20.0% |
| !! | CAAGTTCGTAAATAAATAAA+AGG | - | chr8_4:46501522-46501541 | Msa1328610:intron | 20.0% |
| !! | ATAAGAAAGAAATAAGTTCT+TGG | + | chr8_4:46501610-46501629 | Msa1328620:intron | 20.0% |
| !!! | GGCATATTAAAAGTTTTTTT+AGG | - | chr8_4:46501885-46501904 | Msa1328610:intron | 20.0% |
| !! | TTAGTGAGCAAATAAAATTT+GGG | - | chr8_4:46502145-46502164 | Msa1328610:intron | 20.0% |
| !! | ATTAGTGAGCAAATAAAATT+TGG | - | chr8_4:46502146-46502165 | Msa1328610:intron | 20.0% |
| !! | AAAAATTTGCAGATGAAATT+CGG | - | chr8_4:46499907-46499926 | Msa1328610:intron | 20.0% |
| !! | CAAGTTCGTAAATAAATAAA+AGG | - | chr8_4:46501522-46501541 | Msa1328610:intron | 20.0% |
| !! | ATAAGAAAGAAATAAGTTCT+TGG | + | chr8_4:46501610-46501629 | Msa1328620:intron | 20.0% |
| !!! | GGCATATTAAAAGTTTTTTT+AGG | - | chr8_4:46501885-46501904 | Msa1328610:intron | 20.0% |
| !! | TTAGTGAGCAAATAAAATTT+GGG | - | chr8_4:46502145-46502164 | Msa1328610:intron | 20.0% |
| !! | ATTAGTGAGCAAATAAAATT+TGG | - | chr8_4:46502146-46502165 | Msa1328610:intron | 20.0% |
| ! | TGAATGAATGAATGAATGAA+TGG | + | chr8_4:46500649-46500668 | Msa1328620:intron | 25.0% |
| ! | TTGATTGATTGATTGATTGA+TGG | + | chr8_4:46500743-46500762 | Msa1328620:intron | 25.0% |
| ! | ATGTATATAACTGTTAGTGT+AGG | + | chr8_4:46500894-46500913 | Msa1328620:intron | 25.0% |
| ! | ATTAGATATAGGAATCTTCA+TGG | + | chr8_4:46501287-46501306 | Msa1328620:intron | 25.0% |
| ! | AAAGAAGAAAAAAGAGAAGA+TGG | - | chr8_4:46501458-46501477 | Msa1328610:intron | 25.0% |
| !!! | TGCTTCAAATGTTTTGTTTT+GGG | + | chr8_4:46501479-46501498 | Msa1328620:intron | 25.0% |
| ! | TCATAATAATGCTCTACTAT+TGG | - | chr8_4:46501642-46501661 | Msa1328610:intron | 25.0% |
| !! | CATTCCATCATTTTGTAATA+TGG | + | chr8_4:46501997-46502016 | Msa1328620:intron | 25.0% |
| ! | AGAAAATAGCAAAGATAGAA+AGG | - | chr8_4:46502096-46502115 | Msa1328610:intron | 25.0% |
| !! | GAAAAGACATAAATGGATTT+AGG | - | chr8_4:46502263-46502282 | Msa1328610:intron | 25.0% |
| ! | TGAATGAATGAATGAATGAA+TGG | + | chr8_4:46500649-46500668 | Msa1328620:intron | 25.0% |
| ! | TTGATTGATTGATTGATTGA+TGG | + | chr8_4:46500743-46500762 | Msa1328620:intron | 25.0% |
| ! | ATGTATATAACTGTTAGTGT+AGG | + | chr8_4:46500894-46500913 | Msa1328620:intron | 25.0% |
| ! | ATTAGATATAGGAATCTTCA+TGG | + | chr8_4:46501287-46501306 | Msa1328620:intron | 25.0% |
| ! | AAAGAAGAAAAAAGAGAAGA+TGG | - | chr8_4:46501458-46501477 | Msa1328610:intron | 25.0% |
| !!! | TGCTTCAAATGTTTTGTTTT+GGG | + | chr8_4:46501479-46501498 | Msa1328620:intron | 25.0% |
| ! | TCATAATAATGCTCTACTAT+TGG | - | chr8_4:46501642-46501661 | Msa1328610:intron | 25.0% |
| !! | CATTCCATCATTTTGTAATA+TGG | + | chr8_4:46501997-46502016 | Msa1328620:intron | 25.0% |
| ! | AGAAAATAGCAAAGATAGAA+AGG | - | chr8_4:46502096-46502115 | Msa1328610:intron | 25.0% |
| !! | GAAAAGACATAAATGGATTT+AGG | - | chr8_4:46502263-46502282 | Msa1328610:intron | 25.0% |
| CAAGAAAAGTTCTCCTATTA+AGG | - | chr8_4:46500066-46500085 | Msa1328610:intron | 30.0% | |
| TAATGTACTGTACTGTAATG+TGG | - | chr8_4:46500488-46500507 | Msa1328610:intron | 30.0% | |
| ! | ACAGTACATTATTTGAGATG+TGG | + | chr8_4:46500497-46500516 | Msa1328620:intron | 30.0% |
| TTAGTACATGACTGAATGAT+GGG | + | chr8_4:46500554-46500573 | Msa1328620:intron | 30.0% | |
| TGAATGAATGAATGGATCAA+CGG | + | chr8_4:46500836-46500855 | Msa1328620:intron | 30.0% | |
| ! | TAGGTTATGTGTTTTCTCTT+AGG | + | chr8_4:46500913-46500932 | Msa1328620:intron | 30.0% |
| ! | TAGGTTATGTGTTTTCTCTT+AGG | + | chr8_4:46500913-46500932 | Msa1328620:intron | 30.0% |
| !! | TTTTCTCTTAGGTTGTTAGA+AGG | + | chr8_4:46500996-46501015 | Msa1328620:intron | 30.0% |
| TGTTAGAAGGAAATGTGAAT+TGG | + | chr8_4:46501009-46501028 | Msa1328620:intron | 30.0% | |
| ! | AAACTTTTCGTTCTTAGTGT+CGG | + | chr8_4:46501089-46501108 | Msa1328620:intron | 30.0% |
| !!! | GTGCTTCAAATGTTTTGTTT+TGG | + | chr8_4:46501478-46501497 | Msa1328620:intron | 30.0% |
| !!! | AATGTTTTGTTTTGGGTCTT+TGG | + | chr8_4:46501486-46501505 | Msa1328620:intron | 30.0% |
| !!! | TTATCATTATTTTAAGGGGG+TGG | + | chr8_4:46501679-46501698 | Msa1328620:intron | 30.0% |
| !!! | TATCATTATTTTAAGGGGGT+GGG | + | chr8_4:46501680-46501699 | Msa1328620:intron | 30.0% |
| GAGACCATATTACAAAATGA+TGG | - | chr8_4:46502004-46502023 | Msa1328610:intron | 30.0% | |
| CAAGAAAAGTTCTCCTATTA+AGG | - | chr8_4:46500066-46500085 | Msa1328610:intron | 30.0% | |
| TAATGTACTGTACTGTAATG+TGG | - | chr8_4:46500488-46500507 | Msa1328610:intron | 30.0% | |
| ! | ACAGTACATTATTTGAGATG+TGG | + | chr8_4:46500497-46500516 | Msa1328620:intron | 30.0% |
| TTAGTACATGACTGAATGAT+GGG | + | chr8_4:46500554-46500573 | Msa1328620:intron | 30.0% | |
| TGAATGAATGAATGGATCAA+CGG | + | chr8_4:46500836-46500855 | Msa1328620:intron | 30.0% | |
| ! | TAGGTTATGTGTTTTCTCTT+AGG | + | chr8_4:46500913-46500932 | Msa1328620:intron | 30.0% |
| ! | TAGGTTATGTGTTTTCTCTT+AGG | + | chr8_4:46500913-46500932 | Msa1328620:intron | 30.0% |
| !! | TTTTCTCTTAGGTTGTTAGA+AGG | + | chr8_4:46500996-46501015 | Msa1328620:intron | 30.0% |
| TGTTAGAAGGAAATGTGAAT+TGG | + | chr8_4:46501009-46501028 | Msa1328620:intron | 30.0% | |
| ! | AAACTTTTCGTTCTTAGTGT+CGG | + | chr8_4:46501089-46501108 | Msa1328620:intron | 30.0% |
| !!! | GTGCTTCAAATGTTTTGTTT+TGG | + | chr8_4:46501478-46501497 | Msa1328620:intron | 30.0% |
| !!! | AATGTTTTGTTTTGGGTCTT+TGG | + | chr8_4:46501486-46501505 | Msa1328620:intron | 30.0% |
| !!! | TTATCATTATTTTAAGGGGG+TGG | + | chr8_4:46501679-46501698 | Msa1328620:intron | 30.0% |
| !!! | TATCATTATTTTAAGGGGGT+GGG | + | chr8_4:46501680-46501699 | Msa1328620:intron | 30.0% |
| GAGACCATATTACAAAATGA+TGG | - | chr8_4:46502004-46502023 | Msa1328610:intron | 30.0% | |
| CTTTGTTGGATCTCCTTAAT+AGG | + | chr8_4:46500050-46500069 | Msa1328620:intron | 35.0% | |
| AGAATGGTTGAACGAATTTG+AGG | + | chr8_4:46500153-46500172 | Msa1328620:CDS | 35.0% | |
| GAATGGTTGAACGAATTTGA+GGG | + | chr8_4:46500154-46500173 | Msa1328620:CDS | 35.0% | |
| !! | AAAGCTCGTTCTAAGATTGA+AGG | + | chr8_4:46500208-46500227 | Msa1328620:CDS | 35.0% |
| !! | AAGCTCGTTCTAAGATTGAA+GGG | + | chr8_4:46500209-46500228 | Msa1328620:CDS | 35.0% |
| !!! | TGTTGCTTTTCTACGTTCAA+TGG | + | chr8_4:46500255-46500274 | Msa1328620:CDS | 35.0% |
| ! | AACGGTACCTTTTATTCATC+CGG | - | chr8_4:46500369-46500388 | Msa1328610:intron | 35.0% |
| TCATGTTGTTCATCATCTTG+AGG | - | chr8_4:46500418-46500437 | Msa1328610:intron | 35.0% | |
| GTTAGTACATGACTGAATGA+TGG | + | chr8_4:46500553-46500572 | Msa1328620:intron | 35.0% | |
| ! | TGAATGATGGGATGACTTAT+TGG | + | chr8_4:46500566-46500585 | Msa1328620:intron | 35.0% |
| TGACTTATTGGATGAATGGA+TGG | + | chr8_4:46500578-46500597 | Msa1328620:intron | 35.0% | |
| TTATTGGATGAATGGATGGA+TGG | + | chr8_4:46500582-46500601 | Msa1328620:intron | 35.0% | |
| ! | AGTTAGTTGCTTGTTAGTGT+AGG | + | chr8_4:46500966-46500985 | Msa1328620:intron | 35.0% |
| ATTGGTCACTACCAAAAACT+AGG | + | chr8_4:46501027-46501046 | Msa1328620:intron | 35.0% | |
| CTCTTGAGGTTATATAGTTC+TGG | + | chr8_4:46501052-46501071 | Msa1328620:intron | 35.0% | |
| CATAGGAAGAAGAATAGTGA+AGG | - | chr8_4:46501398-46501417 | Msa1328610:intron | 35.0% | |
| !!! | TTTGTTTTGGGTCTTTGGAT+TGG | + | chr8_4:46501491-46501510 | Msa1328620:intron | 35.0% |
| !!! | ATCATTATTTTAAGGGGGTG+GGG | + | chr8_4:46501681-46501700 | Msa1328620:intron | 35.0% |
| TTCCTATCAACTAAACTCAC+AGG | - | chr8_4:46501906-46501925 | Msa1328610:intron | 35.0% | |
| GTTGTAAATCAATGAGCACT+AGG | - | chr8_4:46502056-46502075 | Msa1328610:intron | 35.0% | |
| GAGAATACAGAACTGTGTTA+AGG | + | chr8_4:46502199-46502218 | Msa1328620:CDS | 35.0% | |
| TGTGTTAAGGATCAAGATCA+GGG | + | chr8_4:46502212-46502231 | Msa1328620:CDS | 35.0% | |
| CTTTGTTGGATCTCCTTAAT+AGG | + | chr8_4:46500050-46500069 | Msa1328620:intron | 35.0% | |
| AGAATGGTTGAACGAATTTG+AGG | + | chr8_4:46500153-46500172 | Msa1328620:CDS | 35.0% | |
| GAATGGTTGAACGAATTTGA+GGG | + | chr8_4:46500154-46500173 | Msa1328620:CDS | 35.0% | |
| !! | AAAGCTCGTTCTAAGATTGA+AGG | + | chr8_4:46500208-46500227 | Msa1328620:CDS | 35.0% |
| !! | AAGCTCGTTCTAAGATTGAA+GGG | + | chr8_4:46500209-46500228 | Msa1328620:CDS | 35.0% |
| !!! | TGTTGCTTTTCTACGTTCAA+TGG | + | chr8_4:46500255-46500274 | Msa1328620:CDS | 35.0% |
| ! | AACGGTACCTTTTATTCATC+CGG | - | chr8_4:46500369-46500388 | Msa1328610:intron | 35.0% |
| TCATGTTGTTCATCATCTTG+AGG | - | chr8_4:46500418-46500437 | Msa1328610:intron | 35.0% | |
| GTTAGTACATGACTGAATGA+TGG | + | chr8_4:46500553-46500572 | Msa1328620:intron | 35.0% | |
| ! | TGAATGATGGGATGACTTAT+TGG | + | chr8_4:46500566-46500585 | Msa1328620:intron | 35.0% |
| TGACTTATTGGATGAATGGA+TGG | + | chr8_4:46500578-46500597 | Msa1328620:intron | 35.0% | |
| TTATTGGATGAATGGATGGA+TGG | + | chr8_4:46500582-46500601 | Msa1328620:intron | 35.0% | |
| ! | AGTTAGTTGCTTGTTAGTGT+AGG | + | chr8_4:46500966-46500985 | Msa1328620:intron | 35.0% |
| ATTGGTCACTACCAAAAACT+AGG | + | chr8_4:46501027-46501046 | Msa1328620:intron | 35.0% | |
| CTCTTGAGGTTATATAGTTC+TGG | + | chr8_4:46501052-46501071 | Msa1328620:intron | 35.0% | |
| CATAGGAAGAAGAATAGTGA+AGG | - | chr8_4:46501398-46501417 | Msa1328610:intron | 35.0% | |
| !!! | TTTGTTTTGGGTCTTTGGAT+TGG | + | chr8_4:46501491-46501510 | Msa1328620:intron | 35.0% |
| !!! | ATCATTATTTTAAGGGGGTG+GGG | + | chr8_4:46501681-46501700 | Msa1328620:intron | 35.0% |
| TTCCTATCAACTAAACTCAC+AGG | - | chr8_4:46501906-46501925 | Msa1328610:intron | 35.0% | |
| GTTGTAAATCAATGAGCACT+AGG | - | chr8_4:46502056-46502075 | Msa1328610:intron | 35.0% | |
| GAGAATACAGAACTGTGTTA+AGG | + | chr8_4:46502199-46502218 | Msa1328620:CDS | 35.0% | |
| TGTGTTAAGGATCAAGATCA+GGG | + | chr8_4:46502212-46502231 | Msa1328620:CDS | 35.0% | |
| TTGGACTTCCTAGATTTCGA+TGG | + | chr8_4:46499950-46499969 | Msa1328620:CDS | 40.0% | |
| CTTCATTGCGAATTACCTTC+TGG | - | chr8_4:46499979-46499998 | Msa1328610:intron | 40.0% | |
| TCCTCAGTTCATCATCATTG+CGG | - | chr8_4:46500006-46500025 | Msa1328610:intron | 40.0% | |
| GAATTGATCAAGCCAGAAAC+CGG | + | chr8_4:46500347-46500366 | Msa1328620:CDS | 40.0% | |
| ! | CCTTTTATTCATCCGGTTTC+TGG | - | chr8_4:46500362-46500381 | Msa1328610:intron | 40.0% |
| CCAGAAACCGGATGAATAAA+AGG | + | chr8_4:46500359-46500378 | Msa1328620:CDS | 40.0% | |
| GGACAAATTGACGAGGAAAA+CGG | - | chr8_4:46500387-46500406 | Msa1328610:intron | 40.0% | |
| TGTTGTTCATCATCTTGAGG+TGG | - | chr8_4:46500415-46500434 | Msa1328610:intron | 40.0% | |
| GGGATGACTTATTGGATGAA+TGG | + | chr8_4:46500574-46500593 | Msa1328620:intron | 40.0% | |
| !! | TTTTGGTTAGCAGGGCATAT+AGG | + | chr8_4:46501119-46501138 | Msa1328620:intron | 40.0% |
| ! | GTGAAGGCAAGTTTAGAACA+AGG | - | chr8_4:46501382-46501401 | Msa1328610:intron | 40.0% |
| ! | AAGAGCAAGGTTCTAGTAGT+TGG | - | chr8_4:46501433-46501452 | Msa1328610:intron | 40.0% |
| AGAGAAGATGGAAAAGAGCA+AGG | - | chr8_4:46501446-46501465 | Msa1328610:intron | 40.0% | |
| !!! | TCATTATTTTAAGGGGGTGG+GGG | + | chr8_4:46501682-46501701 | Msa1328620:intron | 40.0% |
| !! | TGGAGGTGTCAAAATGAGTT+TGG | + | chr8_4:46501717-46501736 | Msa1328620:intron | 40.0% |
| TCAAAATTGGCTACCTCACT+CGG | - | chr8_4:46501788-46501807 | Msa1328610:intron | 40.0% | |
| TGCCTGTGAGTTTAGTTGAT+AGG | + | chr8_4:46501901-46501920 | Msa1328620:intron | 40.0% | |
| CTGTGTTAAGGATCAAGATC+AGG | + | chr8_4:46502211-46502230 | Msa1328620:CDS | 40.0% | |
| TCAGGGAATACTCCTTAAAG+AGG | + | chr8_4:46502229-46502248 | Msa1328620:CDS | 40.0% | |
| ! | ATACTCCTTAAAGAGGTGCA+AGG | + | chr8_4:46502236-46502255 | Msa1328620:CDS | 40.0% |
| TTGGACTTCCTAGATTTCGA+TGG | + | chr8_4:46499950-46499969 | Msa1328620:CDS | 40.0% | |
| CTTCATTGCGAATTACCTTC+TGG | - | chr8_4:46499979-46499998 | Msa1328610:intron | 40.0% | |
| TCCTCAGTTCATCATCATTG+CGG | - | chr8_4:46500006-46500025 | Msa1328610:intron | 40.0% | |
| GAATTGATCAAGCCAGAAAC+CGG | + | chr8_4:46500347-46500366 | Msa1328620:CDS | 40.0% | |
| ! | CCTTTTATTCATCCGGTTTC+TGG | - | chr8_4:46500362-46500381 | Msa1328610:intron | 40.0% |
| CCAGAAACCGGATGAATAAA+AGG | + | chr8_4:46500359-46500378 | Msa1328620:CDS | 40.0% | |
| GGACAAATTGACGAGGAAAA+CGG | - | chr8_4:46500387-46500406 | Msa1328610:intron | 40.0% | |
| TGTTGTTCATCATCTTGAGG+TGG | - | chr8_4:46500415-46500434 | Msa1328610:intron | 40.0% | |
| GGGATGACTTATTGGATGAA+TGG | + | chr8_4:46500574-46500593 | Msa1328620:intron | 40.0% | |
| !! | TTTTGGTTAGCAGGGCATAT+AGG | + | chr8_4:46501119-46501138 | Msa1328620:intron | 40.0% |
| ! | GTGAAGGCAAGTTTAGAACA+AGG | - | chr8_4:46501382-46501401 | Msa1328610:intron | 40.0% |
| ! | AAGAGCAAGGTTCTAGTAGT+TGG | - | chr8_4:46501433-46501452 | Msa1328610:intron | 40.0% |
| AGAGAAGATGGAAAAGAGCA+AGG | - | chr8_4:46501446-46501465 | Msa1328610:intron | 40.0% | |
| !!! | TCATTATTTTAAGGGGGTGG+GGG | + | chr8_4:46501682-46501701 | Msa1328620:intron | 40.0% |
| !! | TGGAGGTGTCAAAATGAGTT+TGG | + | chr8_4:46501717-46501736 | Msa1328620:intron | 40.0% |
| TCAAAATTGGCTACCTCACT+CGG | - | chr8_4:46501788-46501807 | Msa1328610:intron | 40.0% | |
| TGCCTGTGAGTTTAGTTGAT+AGG | + | chr8_4:46501901-46501920 | Msa1328620:intron | 40.0% | |
| CTGTGTTAAGGATCAAGATC+AGG | + | chr8_4:46502211-46502230 | Msa1328620:CDS | 40.0% | |
| TCAGGGAATACTCCTTAAAG+AGG | + | chr8_4:46502229-46502248 | Msa1328620:CDS | 40.0% | |
| ! | ATACTCCTTAAAGAGGTGCA+AGG | + | chr8_4:46502236-46502255 | Msa1328620:CDS | 40.0% |
| GTGATTCAGTCTTTCCAACG+TGG | - | chr8_4:46499882-46499901 | Msa1328610:intron | 45.0% | |
| TCTGGTCACCATCGAAATCT+AGG | - | chr8_4:46499961-46499980 | Msa1328610:intron | 45.0% | |
| AGATTTCGATGGTGACCAGA+AGG | + | chr8_4:46499961-46499980 | Msa1328620:CDS | 45.0% | |
| ! | TCCGCAATGATGATGAACTG+AGG | + | chr8_4:46500002-46500021 | Msa1328620:CDS | 45.0% |
| CAGCTACCTCTTTGCTTTGT+TGG | + | chr8_4:46500036-46500055 | Msa1328620:intron | 45.0% | |
| GGAGATCCAACAAAGCAAAG+AGG | - | chr8_4:46500045-46500064 | Msa1328610:intron | 45.0% | |
| GCTTGAAATGTAACGACGAG+CGG | - | chr8_4:46500113-46500132 | Msa1328610:intron | 45.0% | |
| !! | AAGCTGCAGATTCGCTTTTG+AGG | + | chr8_4:46500129-46500148 | Msa1328620:intron | 45.0% |
| !! | AGCTGCAGATTCGCTTTTGA+GGG | + | chr8_4:46500130-46500149 | Msa1328620:intron | 45.0% |
| !! | GATTCGCTTTTGAGGGAGAA+TGG | + | chr8_4:46500137-46500156 | Msa1328620:intron | 45.0% |
| TGTTCATCATCTTGAGGTGG+AGG | - | chr8_4:46500412-46500431 | Msa1328610:intron | 45.0% | |
| TGGATGAATGGATGGATGGA+TGG | + | chr8_4:46500586-46500605 | Msa1328620:intron | 45.0% | |
| TGAATGGATGGATGGATGGA+TGG | + | chr8_4:46500590-46500609 | Msa1328620:intron | 45.0% | |
| !!! | CCTCAAGAGCACCTAGTTTT+TGG | - | chr8_4:46501041-46501060 | Msa1328610:intron | 45.0% |
| CCAAAAACTAGGTGCTCTTG+AGG | + | chr8_4:46501038-46501057 | Msa1328620:intron | 45.0% | |
| !!! | TTAGTGTCGGCTGCTGATTT+TGG | + | chr8_4:46501102-46501121 | Msa1328620:intron | 45.0% |
| !!! | GCTGCTGATTTTGGTTAGCA+GGG | + | chr8_4:46501111-46501130 | Msa1328620:intron | 45.0% |
| GTTGGAGGAACAGGATACAT+AGG | - | chr8_4:46501415-46501434 | Msa1328610:intron | 45.0% | |
| GTTCTAGTAGTTGGAGGAAC+AGG | - | chr8_4:46501424-46501443 | Msa1328610:intron | 45.0% | |
| ! | AGCAAGGTTCTAGTAGTTGG+AGG | - | chr8_4:46501430-46501449 | Msa1328610:intron | 45.0% |
| ! | TTTGGGTCTTTGGATTGGAC+TGG | + | chr8_4:46501496-46501515 | Msa1328620:intron | 45.0% |
| ACGCAACTTACGCAAGTACT+AGG | - | chr8_4:46501746-46501765 | Msa1328610:intron | 45.0% | |
| ATGACGAACTCCAAAGTCAG+TGG | + | chr8_4:46501943-46501962 | Msa1328620:intron | 45.0% | |
| TGAGCACTTACGCAAGTACT+AGG | - | chr8_4:46502026-46502045 | Msa1328610:intron | 45.0% | |
| TAGGTCCTTGCACCTCTTTA+AGG | - | chr8_4:46502244-46502263 | Msa1328610:intron | 45.0% | |
| GTGATTCAGTCTTTCCAACG+TGG | - | chr8_4:46499882-46499901 | Msa1328610:intron | 45.0% | |
| TCTGGTCACCATCGAAATCT+AGG | - | chr8_4:46499961-46499980 | Msa1328610:intron | 45.0% | |
| AGATTTCGATGGTGACCAGA+AGG | + | chr8_4:46499961-46499980 | Msa1328620:CDS | 45.0% | |
| ! | TCCGCAATGATGATGAACTG+AGG | + | chr8_4:46500002-46500021 | Msa1328620:CDS | 45.0% |
| CAGCTACCTCTTTGCTTTGT+TGG | + | chr8_4:46500036-46500055 | Msa1328620:intron | 45.0% | |
| GGAGATCCAACAAAGCAAAG+AGG | - | chr8_4:46500045-46500064 | Msa1328610:intron | 45.0% | |
| GCTTGAAATGTAACGACGAG+CGG | - | chr8_4:46500113-46500132 | Msa1328610:intron | 45.0% | |
| !! | AAGCTGCAGATTCGCTTTTG+AGG | + | chr8_4:46500129-46500148 | Msa1328620:intron | 45.0% |
| !! | AGCTGCAGATTCGCTTTTGA+GGG | + | chr8_4:46500130-46500149 | Msa1328620:intron | 45.0% |
| !! | GATTCGCTTTTGAGGGAGAA+TGG | + | chr8_4:46500137-46500156 | Msa1328620:intron | 45.0% |
| TGTTCATCATCTTGAGGTGG+AGG | - | chr8_4:46500412-46500431 | Msa1328610:intron | 45.0% | |
| TGGATGAATGGATGGATGGA+TGG | + | chr8_4:46500586-46500605 | Msa1328620:intron | 45.0% | |
| TGAATGGATGGATGGATGGA+TGG | + | chr8_4:46500590-46500609 | Msa1328620:intron | 45.0% | |
| !!! | CCTCAAGAGCACCTAGTTTT+TGG | - | chr8_4:46501041-46501060 | Msa1328610:intron | 45.0% |
| CCAAAAACTAGGTGCTCTTG+AGG | + | chr8_4:46501038-46501057 | Msa1328620:intron | 45.0% | |
| !!! | TTAGTGTCGGCTGCTGATTT+TGG | + | chr8_4:46501102-46501121 | Msa1328620:intron | 45.0% |
| !!! | GCTGCTGATTTTGGTTAGCA+GGG | + | chr8_4:46501111-46501130 | Msa1328620:intron | 45.0% |
| GTTGGAGGAACAGGATACAT+AGG | - | chr8_4:46501415-46501434 | Msa1328610:intron | 45.0% | |
| GTTCTAGTAGTTGGAGGAAC+AGG | - | chr8_4:46501424-46501443 | Msa1328610:intron | 45.0% | |
| ! | AGCAAGGTTCTAGTAGTTGG+AGG | - | chr8_4:46501430-46501449 | Msa1328610:intron | 45.0% |
| ! | TTTGGGTCTTTGGATTGGAC+TGG | + | chr8_4:46501496-46501515 | Msa1328620:intron | 45.0% |
| ACGCAACTTACGCAAGTACT+AGG | - | chr8_4:46501746-46501765 | Msa1328610:intron | 45.0% | |
| ATGACGAACTCCAAAGTCAG+TGG | + | chr8_4:46501943-46501962 | Msa1328620:intron | 45.0% | |
| TGAGCACTTACGCAAGTACT+AGG | - | chr8_4:46502026-46502045 | Msa1328610:intron | 45.0% | |
| TAGGTCCTTGCACCTCTTTA+AGG | - | chr8_4:46502244-46502263 | Msa1328610:intron | 45.0% | |
| ! | GTCCAAGAGAAGCACAGCAT+CGG | - | chr8_4:46499936-46499955 | Msa1328610:intron | 50.0% |
| TGTAACGACGAGCGGTATCA+AGG | - | chr8_4:46500105-46500124 | Msa1328610:intron | 50.0% | |
| TGGATGGATGGATGGATGGA+TGG | + | chr8_4:46500594-46500613 | Msa1328620:intron | 50.0% | |
| !!! | GGCTGCTGATTTTGGTTAGC+AGG | + | chr8_4:46501110-46501129 | Msa1328620:intron | 50.0% |
| CTACCTTAGTTGACCGAGTG+AGG | + | chr8_4:46501772-46501791 | Msa1328620:intron | 50.0% | |
| CTACCTCACTCGGTCAACTA+AGG | - | chr8_4:46501778-46501797 | Msa1328610:intron | 50.0% | |
| ACTCCAAAGTCAGTGGCAGA+TGG | + | chr8_4:46501950-46501969 | Msa1328620:intron | 50.0% | |
| !! | TCACCATCTGCCACTGACTT+TGG | - | chr8_4:46501956-46501975 | Msa1328610:intron | 50.0% |
| ! | GTCCAAGAGAAGCACAGCAT+CGG | - | chr8_4:46499936-46499955 | Msa1328610:intron | 50.0% |
| TGTAACGACGAGCGGTATCA+AGG | - | chr8_4:46500105-46500124 | Msa1328610:intron | 50.0% | |
| TGGATGGATGGATGGATGGA+TGG | + | chr8_4:46500594-46500613 | Msa1328620:intron | 50.0% | |
| !!! | GGCTGCTGATTTTGGTTAGC+AGG | + | chr8_4:46501110-46501129 | Msa1328620:intron | 50.0% |
| CTACCTTAGTTGACCGAGTG+AGG | + | chr8_4:46501772-46501791 | Msa1328620:intron | 50.0% | |
| CTACCTCACTCGGTCAACTA+AGG | - | chr8_4:46501778-46501797 | Msa1328610:intron | 50.0% | |
| ACTCCAAAGTCAGTGGCAGA+TGG | + | chr8_4:46501950-46501969 | Msa1328620:intron | 50.0% | |
| !! | TCACCATCTGCCACTGACTT+TGG | - | chr8_4:46501956-46501975 | Msa1328610:intron | 50.0% |
| TCACATTACCCAGGCCACGT+TGG | + | chr8_4:46499865-46499884 | Msa1328620:CDS | 55.0% | |
| CAGTCTTTCCAACGTGGCCT+GGG | - | chr8_4:46499876-46499895 | Msa1328610:intron | 55.0% | |
| TCAGTCTTTCCAACGTGGCC+TGG | - | chr8_4:46499877-46499896 | Msa1328610:intron | 55.0% | |
| AGCCGATGCTGTGCTTCTCT+TGG | + | chr8_4:46499931-46499950 | Msa1328620:CDS | 55.0% | |
| GCGCTCTCAACGCTCAACAA+GGG | + | chr8_4:46500176-46500195 | Msa1328620:CDS | 55.0% | |
| ACGCTCAACAAGGGAACAGC+AGG | + | chr8_4:46500185-46500204 | Msa1328620:CDS | 55.0% | |
| GGAGGCTGGACAAATTGACG+AGG | - | chr8_4:46500394-46500413 | Msa1328610:intron | 55.0% | |
| CATCATCTTGAGGTGGAGGC+TGG | - | chr8_4:46500408-46500427 | Msa1328610:intron | 55.0% | |
| TCACATTACCCAGGCCACGT+TGG | + | chr8_4:46499865-46499884 | Msa1328620:CDS | 55.0% | |
| CAGTCTTTCCAACGTGGCCT+GGG | - | chr8_4:46499876-46499895 | Msa1328610:intron | 55.0% | |
| TCAGTCTTTCCAACGTGGCC+TGG | - | chr8_4:46499877-46499896 | Msa1328610:intron | 55.0% | |
| AGCCGATGCTGTGCTTCTCT+TGG | + | chr8_4:46499931-46499950 | Msa1328620:CDS | 55.0% | |
| GCGCTCTCAACGCTCAACAA+GGG | + | chr8_4:46500176-46500195 | Msa1328620:CDS | 55.0% | |
| ACGCTCAACAAGGGAACAGC+AGG | + | chr8_4:46500185-46500204 | Msa1328620:CDS | 55.0% | |
| GGAGGCTGGACAAATTGACG+AGG | - | chr8_4:46500394-46500413 | Msa1328610:intron | 55.0% | |
| CATCATCTTGAGGTGGAGGC+TGG | - | chr8_4:46500408-46500427 | Msa1328610:intron | 55.0% | |
| GGCGCTCTCAACGCTCAACA+AGG | + | chr8_4:46500175-46500194 | Msa1328620:CDS | 60.0% | |
| AGCAGCAGCAGCAGCAGCTT+TGG | - | chr8_4:46500305-46500324 | Msa1328610:intron | 60.0% | |
| TTTAAGGGGGTGGGGGTAGC+TGG | + | chr8_4:46501689-46501708 | Msa1328620:intron | 60.0% | |
| TTAAGGGGGTGGGGGTAGCT+GGG | + | chr8_4:46501690-46501709 | Msa1328620:intron | 60.0% | |
| GGCGCTCTCAACGCTCAACA+AGG | + | chr8_4:46500175-46500194 | Msa1328620:CDS | 60.0% | |
| AGCAGCAGCAGCAGCAGCTT+TGG | - | chr8_4:46500305-46500324 | Msa1328610:intron | 60.0% | |
| TTTAAGGGGGTGGGGGTAGC+TGG | + | chr8_4:46501689-46501708 | Msa1328620:intron | 60.0% | |
| TTAAGGGGGTGGGGGTAGCT+GGG | + | chr8_4:46501690-46501709 | Msa1328620:intron | 60.0% | |
| GGTGGGGGTAGCTGGGTAGG+TGG | + | chr8_4:46501697-46501716 | Msa1328620:intron | 70.0% | |
| GGGGGTAGCTGGGTAGGTGG+AGG | + | chr8_4:46501700-46501719 | Msa1328620:intron | 70.0% | |
| GGTGGGGGTAGCTGGGTAGG+TGG | + | chr8_4:46501697-46501716 | Msa1328620:intron | 70.0% | |
| GGGGGTAGCTGGGTAGGTGG+AGG | + | chr8_4:46501700-46501719 | Msa1328620:intron | 70.0% | |
| GGGGGTGGGGGTAGCTGGGT+AGG | + | chr8_4:46501694-46501713 | Msa1328620:intron | 75.0% | |
| GGGGGTGGGGGTAGCTGGGT+AGG | + | chr8_4:46501694-46501713 | Msa1328620:intron | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 46499857 | 46502298 | 46499857 | ID=Msa1328620;Name=Msa1328620 |
| chr8_4 | mRNA | 46499857 | 46502298 | 46499857 | ID=Msa1328620-mRNA-1;Parent=Msa1328620;Name=Msa1328620-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0|0.5|0|1|0|0|3|0|179 |
| chr8_4 | exon | 46499857 | 46500053 | 46499857 | ID=Msa1328620-mRNA-1:exon:13213;Parent=Msa1328620-mRNA-1 |
| chr8_4 | exon | 46500138 | 46500380 | 46500138 | ID=Msa1328620-mRNA-1:exon:13214;Parent=Msa1328620-mRNA-1 |
| chr8_4 | exon | 46502199 | 46502298 | 46502199 | ID=Msa1328620-mRNA-1:exon:13215;Parent=Msa1328620-mRNA-1 |
| chr8_4 | CDS | 46499857 | 46500053 | 46499857 | ID=Msa1328620-mRNA-1:cds;Parent=Msa1328620-mRNA-1 |
| chr8_4 | CDS | 46500138 | 46500380 | 46500138 | ID=Msa1328620-mRNA-1:cds;Parent=Msa1328620-mRNA-1 |
| chr8_4 | CDS | 46502199 | 46502298 | 46502199 | ID=Msa1328620-mRNA-1:cds;Parent=Msa1328620-mRNA-1 |
| Gene Sequence |
| Protein sequence |
