Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394840 | GAU15960.1 | 35.915 | 284 | 126 | 6 | 7 | 287 | 8 | 238 | 9.02e-40 | 152 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394840 | A0A392MU20 | 34.672 | 274 | 123 | 6 | 17 | 287 | 1 | 221 | 1.41e-37 | 145 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0719080 | Msa1394840 | 0.831284 | 1.821015e-55 | -8.615850e-47 |
| Msa0719090 | Msa1394840 | 0.827014 | 1.976792e-54 | -8.615850e-47 |
| Msa0719390 | Msa1394840 | 0.858907 | 5.965450e-63 | -8.615850e-47 |
| Msa0789640 | Msa1394840 | 0.855869 | 4.722040e-62 | -8.615850e-47 |
| Msa1305900 | Msa1394840 | 0.858701 | 6.875210e-63 | -8.615850e-47 |
| Msa1328620 | Msa1394840 | 0.844157 | 8.994567e-59 | -8.615850e-47 |
| Msa1138460 | Msa1394840 | 0.802925 | 4.451780e-49 | -8.615850e-47 |
| Msa1163330 | Msa1394840 | 0.807129 | 5.876834e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1394840 | MtrunA17_Chr1g0200711 | 31.271 | 291 | 144 | 6 | 7 | 294 | 8 | 245 | 2.11e-34 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 109 sgRNAs with CRISPR-Local
Find 213 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAATTTCTGTACTTTATTTA+TGG | 0.108080 | tig0021897:+43362 | Msa1394840:three_prime_UTR |
| TAGTAGCCTCGAGGCGTTTC+TGG | 0.185657 | tig0021897:-40936 | None:intergenic |
| CATAAATAAAGTACAGAAAT+TGG | 0.188699 | tig0021897:-43361 | None:intergenic |
| ATAATATTATGATATGAAAA+TGG | 0.227696 | tig0021897:-43258 | None:intergenic |
| TAACATGTATGTTCGAAGTT+TGG | 0.287346 | tig0021897:+43411 | Msa1394840:three_prime_UTR |
| AATCGATTGCTGGAGTTTCT+AGG | 0.295720 | tig0021897:+40766 | Msa1394840:CDS |
| TTCAATTCAATTCAATTCAA+TGG | 0.306877 | tig0021897:+40531 | Msa1394840:exon |
| CGCTGAGATCCAACAAATAA+AGG | 0.320692 | tig0021897:+41035 | Msa1394840:CDS |
| TGTTGCCTTCCTTTATTTGT+TGG | 0.321857 | tig0021897:-41044 | None:intergenic |
| CATATAAAATACTGACAAAA+TGG | 0.325192 | tig0021897:-43315 | None:intergenic |
| TCAAATCAGAAAACAGATTC+AGG | 0.327765 | tig0021897:-40822 | None:intergenic |
| ATGGTTAATGACATTAGGTT+AGG | 0.328897 | tig0021897:-40390 | None:intergenic |
| CATCATGATGTTTCTGAAAC+AGG | 0.355422 | tig0021897:-42290 | None:intergenic |
| TACACGTTGGAGGAGTTAAA+TGG | 0.361640 | tig0021897:-40409 | None:intergenic |
| CGCGAGAGCGCAATAATTAC+TGG | 0.364578 | tig0021897:-40461 | None:intergenic |
| AGGCCATTGTGTTGTTGGTC+AGG | 0.366476 | tig0021897:-41951 | None:intergenic |
| TGCAAATCTTAATCGATTGC+TGG | 0.372258 | tig0021897:+40756 | Msa1394840:CDS |
| GTTAAATGGTTAATGACATT+AGG | 0.375151 | tig0021897:-40395 | None:intergenic |
| AATGCTGCCATATGTCTTGC+AGG | 0.377606 | tig0021897:+42334 | Msa1394840:CDS |
| TGATGATCAGCTTGATGAAT+TGG | 0.379101 | tig0021897:+42044 | Msa1394840:CDS |
| CTTTGAGGCCATTGTGTTGT+TGG | 0.384634 | tig0021897:-41956 | None:intergenic |
| GTGTTCATCGACCACAGAAA+TGG | 0.393587 | tig0021897:-40800 | None:intergenic |
| ACTATAGCATCCACCTGTTT+CGG | 0.402786 | tig0021897:-40637 | None:intergenic |
| CAAAAGATTGGCGTGGCTTA+CGG | 0.408058 | tig0021897:-42023 | None:intergenic |
| CAAACTCTAGAGAAGATACT+TGG | 0.409551 | tig0021897:-42206 | None:intergenic |
| TCAATTCAATTCAATTCAAT+GGG | 0.410322 | tig0021897:+40532 | Msa1394840:exon |
| GCGTTTCTGGACAACTAAAT+CGG | 0.418455 | tig0021897:-40923 | None:intergenic |
| AGCGGAGATATGGTTAGGAT+TGG | 0.418871 | tig0021897:-40490 | None:intergenic |
| CCGTCAAATCCATCGATTAC+GGG | 0.419275 | tig0021897:-40604 | None:intergenic |
| ATTGGCGTGGCTTACGGTTG+TGG | 0.422804 | tig0021897:-42017 | None:intergenic |
| GATATTCAACAACATGCTTA+AGG | 0.426688 | tig0021897:+42122 | Msa1394840:CDS |
| TGGTTAATGACATTAGGTTA+GGG | 0.427272 | tig0021897:-40389 | None:intergenic |
| CCCGTCAAATCCATCGATTA+CGG | 0.429826 | tig0021897:-40605 | None:intergenic |
| GAGTCCGTTACCAGTACAAT+TGG | 0.432677 | tig0021897:+43203 | Msa1394840:CDS |
| TTCTGATTTCTTTCGAACAA+TGG | 0.436021 | tig0021897:-42244 | None:intergenic |
| CGATTACGGGTCGGAGTTGG+TGG | 0.436161 | tig0021897:-40591 | None:intergenic |
| TAATATTATGATATGAAAAT+GGG | 0.440340 | tig0021897:-43257 | None:intergenic |
| AAAACAAAGGAGCGGAGATA+TGG | 0.442850 | tig0021897:-40500 | None:intergenic |
| ATGGTGTGTATGCACTTTGA+TGG | 0.444321 | tig0021897:+43381 | Msa1394840:three_prime_UTR |
| ATAAATAAAGTACAGAAATT+GGG | 0.448091 | tig0021897:-43360 | None:intergenic |
| CAAGCTGATCATCAAAAGAT+TGG | 0.455046 | tig0021897:-42035 | None:intergenic |
| AAGCTCAAAGTTTACTTTGA+CGG | 0.462271 | tig0021897:+40850 | Msa1394840:CDS |
| TGTTCATCGACCACAGAAAT+GGG | 0.465814 | tig0021897:-40799 | None:intergenic |
| AAAGGAGCGGAGATATGGTT+AGG | 0.478938 | tig0021897:-40495 | None:intergenic |
| TGGTTGCGGCTGCTAGATAA+TGG | 0.479100 | tig0021897:-40441 | None:intergenic |
| ACTCAAATAGCGAGGAAACT+TGG | 0.482837 | tig0021897:+43113 | Msa1394840:intron |
| TATAATTCAGTTTAGTTCGA+TGG | 0.485132 | tig0021897:-40987 | None:intergenic |
| CAAGATACCTGCAAGACATA+TGG | 0.485566 | tig0021897:-42341 | None:intergenic |
| GCGGAGATATGGTTAGGATT+GGG | 0.490106 | tig0021897:-40489 | None:intergenic |
| CCCGTAATCGATGGATTTGA+CGG | 0.491309 | tig0021897:+40604 | Msa1394840:CDS |
| TGATGTTTCTGAAACAGGTC+AGG | 0.492055 | tig0021897:-42285 | None:intergenic |
| TTCTCCATCTCCAATTGTAC+TGG | 0.495562 | tig0021897:-43213 | None:intergenic |
| GGTAACGGACTCATTGTAGA+AGG | 0.501723 | tig0021897:-43192 | None:intergenic |
| CAGTTTAGTTCGATGGTCCT+CGG | 0.508588 | tig0021897:-40980 | None:intergenic |
| CATCGATTACGGGTCGGAGT+TGG | 0.511400 | tig0021897:-40594 | None:intergenic |
| GTATGTAGATAACTCAAACT+TGG | 0.512951 | tig0021897:-43481 | None:intergenic |
| CGTTTCTGGACAACTAAATC+GGG | 0.512963 | tig0021897:-40922 | None:intergenic |
| AAGTTTACTTTGACGGAGCA+TGG | 0.514430 | tig0021897:+40857 | Msa1394840:CDS |
| GGCCATTGTGTTGTTGGTCA+GGG | 0.517088 | tig0021897:-41950 | None:intergenic |
| TGAGGTTGGCGCTAGAATGT+TGG | 0.518995 | tig0021897:+43163 | Msa1394840:CDS |
| TACAGAGGCCAAGCTTATGC+AGG | 0.522332 | tig0021897:+42146 | Msa1394840:CDS |
| ACATATGGCAGCATTGCTGC+AGG | 0.525649 | tig0021897:-42326 | None:intergenic |
| GATTTGCATAAGCTGAGAGA+AGG | 0.531916 | tig0021897:-40741 | None:intergenic |
| CCGTAATCGATGGATTTGAC+GGG | 0.535088 | tig0021897:+40605 | Msa1394840:CDS |
| AAAAGTGAACGCATTGAGGT+TGG | 0.536080 | tig0021897:+43149 | Msa1394840:CDS |
| ATTCAATTCAATTCAATGGG+TGG | 0.537321 | tig0021897:+40535 | Msa1394840:exon |
| CGAGGCTACTAAGAATCACC+TGG | 0.537322 | tig0021897:+40948 | Msa1394840:CDS |
| GATTTCTTTCGAACAATGGA+GGG | 0.537545 | tig0021897:-42240 | None:intergenic |
| AGCGCAATAATTACTGGTTG+CGG | 0.540851 | tig0021897:-40455 | None:intergenic |
| CACAGAACAATGCGACTTTG+AGG | 0.542941 | tig0021897:-41971 | None:intergenic |
| TGATTTCTTTCGAACAATGG+AGG | 0.549021 | tig0021897:-42241 | None:intergenic |
| ATTTGCATAAGCTGAGAGAA+GGG | 0.553924 | tig0021897:-40740 | None:intergenic |
| ATCTCCAATTGTACTGGTAA+CGG | 0.556871 | tig0021897:-43207 | None:intergenic |
| GAGTGGCTTAGTGTCGTCAT+TGG | 0.557628 | tig0021897:-41995 | None:intergenic |
| TTGAATTGAATTCAAAACAA+AGG | 0.563875 | tig0021897:-40513 | None:intergenic |
| TGTGCGAACCTGCATAAGCT+TGG | 0.565158 | tig0021897:-42154 | None:intergenic |
| GGTCCTCGGATGTGTACTCC+AGG | 0.565951 | tig0021897:-40966 | None:intergenic |
| CTTCTTGCTCTCGTGAGAGA+AGG | 0.572465 | tig0021897:-40896 | None:intergenic |
| CAAATAGCGAGGAAACTTGG+AGG | 0.580676 | tig0021897:+43116 | Msa1394840:intron |
| CAACTCCGACCCGTAATCGA+TGG | 0.585048 | tig0021897:+40595 | Msa1394840:CDS |
| TATCATAATATTATGGCAAG+TGG | 0.585551 | tig0021897:+43267 | Msa1394840:exon |
| GAAATCAGAAGAAAGTTGCA+AGG | 0.586986 | tig0021897:+42257 | Msa1394840:CDS |
| AAATAGCGAGGAAACTTGGA+GGG | 0.593670 | tig0021897:+43117 | Msa1394840:intron |
| AGAGTTGACGACTGTTCTGA+AGG | 0.603709 | tig0021897:+42176 | Msa1394840:CDS |
| GTTACCAGTACAATTGGAGA+TGG | 0.605407 | tig0021897:+43209 | Msa1394840:CDS |
| GAGATCCAACAAATAAAGGA+AGG | 0.606146 | tig0021897:+41039 | Msa1394840:CDS |
| GAGATATGGTTAGGATTGGG+TGG | 0.621294 | tig0021897:-40486 | None:intergenic |
| AAACTCTAGAGAAGATACTT+GGG | 0.625633 | tig0021897:-42205 | None:intergenic |
| GTGACGACGATACACGTTGG+AGG | 0.626080 | tig0021897:-40419 | None:intergenic |
| CGTGGCTTACGGTTGTGGAG+TGG | 0.628056 | tig0021897:-42012 | None:intergenic |
| TTGCATAAGCTGAGAGAAGG+GGG | 0.634466 | tig0021897:-40738 | None:intergenic |
| CACCCTGACCAACAACACAA+TGG | 0.634616 | tig0021897:+41948 | Msa1394840:CDS |
| TTTGCATAAGCTGAGAGAAG+GGG | 0.641548 | tig0021897:-40739 | None:intergenic |
| CGTAATCGATGGATTTGACG+GGG | 0.649344 | tig0021897:+40606 | Msa1394840:CDS |
| TTGAATTCAAAACAAAGGAG+CGG | 0.649387 | tig0021897:-40508 | None:intergenic |
| TATAGTCAAGTTTATCGCCA+CGG | 0.649797 | tig0021897:+40654 | Msa1394840:CDS |
| TCAGTGTACTCCCATTTCTG+TGG | 0.652198 | tig0021897:+40789 | Msa1394840:CDS |
| ACGCCTATCGTCATAGTCCG+TGG | 0.662689 | tig0021897:-40671 | None:intergenic |
| CAAATCCATCGATTACGGGT+CGG | 0.665025 | tig0021897:-40600 | None:intergenic |
| TCGCCACGGACTATGACGAT+AGG | 0.666817 | tig0021897:+40668 | Msa1394840:CDS |
| CAACATGCTTAAGGATACAG+AGG | 0.668373 | tig0021897:+42131 | Msa1394840:CDS |
| TGATCATCAAAAGATTGGCG+TGG | 0.674556 | tig0021897:-42030 | None:intergenic |
| AATAGCGAGGAAACTTGGAG+GGG | 0.679610 | tig0021897:+43118 | Msa1394840:intron |
| ATGGTGACGACGATACACGT+TGG | 0.708448 | tig0021897:-40422 | None:intergenic |
| TCACCTGGAGTACACATCCG+AGG | 0.710730 | tig0021897:+40963 | Msa1394840:CDS |
| GGTGATTCTTAGTAGCCTCG+AGG | 0.716187 | tig0021897:-40945 | None:intergenic |
| ATATTATGGCAAGTGGTGTG+TGG | 0.720183 | tig0021897:+43274 | Msa1394840:exon |
| AGTTGTCCAGAAACGCCTCG+AGG | 0.733118 | tig0021897:+40930 | Msa1394840:CDS |
| AATATCACGTCAATATCACG+CGG | 0.748291 | tig0021897:-40703 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATTATAATTAAATAAA+GGG | - | tig0021897:41680-41699 | None:intergenic | 0.0% |
| !! | TATATATTATAATTAAATAA+AGG | - | tig0021897:41681-41700 | None:intergenic | 0.0% |
| !! | TAGAAAATCAAAAATATATA+CGG | - | tig0021897:43082-43101 | None:intergenic | 10.0% |
| !! | TAATATTATGATATGAAAAT+GGG | - | tig0021897:43260-43279 | None:intergenic | 10.0% |
| !! | ATAATATTATGATATGAAAA+TGG | - | tig0021897:43261-43280 | None:intergenic | 10.0% |
| !!! | ATTTTCATATCATAATATTA+TGG | + | tig0021897:43260-43279 | Msa1394840:exon | 10.0% |
| !!! | AAGAAAAGTGTATAAATAAA+GGG | + | tig0021897:41247-41266 | Msa1394840:intron | 15.0% |
| !! | TATTTAGTGTTATATTGTAT+TGG | + | tig0021897:41311-41330 | Msa1394840:intron | 15.0% |
| !!! | TATTAAACCGAAAATTTTAT+AGG | + | tig0021897:41605-41624 | Msa1394840:intron | 15.0% |
| !!! | ATTAAACCGAAAATTTTATA+GGG | + | tig0021897:41606-41625 | Msa1394840:intron | 15.0% |
| !!! | CATATGTTGATTATTTTATT+AGG | - | tig0021897:42368-42387 | None:intergenic | 15.0% |
| !! | CTATTTACAACTAATTAAAA+AGG | - | tig0021897:42567-42586 | None:intergenic | 15.0% |
| !!! | CATTATAATTTTTATGACAA+TGG | + | tig0021897:42750-42769 | Msa1394840:intron | 15.0% |
| !! | ATAAATAAAGTACAGAAATT+GGG | - | tig0021897:43363-43382 | None:intergenic | 15.0% |
| !! | TTGAATTGAATTCAAAACAA+AGG | - | tig0021897:40516-40535 | None:intergenic | 20.0% |
| !! | TTCAATTCAATTCAATTCAA+TGG | + | tig0021897:40526-40545 | Msa1394840:five_prime_UTR | 20.0% |
| !! | TCAATTCAATTCAATTCAAT+GGG | + | tig0021897:40527-40546 | Msa1394840:five_prime_UTR | 20.0% |
| !!! | TAAAAAGTTGAACCTTTTTT+GGG | - | tig0021897:41072-41091 | None:intergenic | 20.0% |
| !! | TCATTATTAGAAATAAACGT+TGG | - | tig0021897:41116-41135 | None:intergenic | 20.0% |
| !!! | CAAGAAAAGTGTATAAATAA+AGG | + | tig0021897:41246-41265 | Msa1394840:intron | 20.0% |
| !!! | AGAAAAGTGTATAAATAAAG+GGG | + | tig0021897:41248-41267 | Msa1394840:intron | 20.0% |
| !! | AAAGTGGAATATATTGTATT+GGG | + | tig0021897:41271-41290 | Msa1394840:intron | 20.0% |
| !!! | GACACTTTTTTTTAGAAAAT+GGG | + | tig0021897:41381-41400 | Msa1394840:intron | 20.0% |
| !! | TGAGTATTTATTAAGTACTA+AGG | + | tig0021897:41510-41529 | Msa1394840:intron | 20.0% |
| !!! | TTAAACCGAAAATTTTATAG+GGG | + | tig0021897:41607-41626 | Msa1394840:intron | 20.0% |
| !! | ATTTATGATAAAGATATTGC+TGG | + | tig0021897:42510-42529 | Msa1394840:intron | 20.0% |
| !!! | ATGATACAACTAGTTTTTAT+AGG | - | tig0021897:42916-42935 | None:intergenic | 20.0% |
| !!! | CAAAAGTACAAGATAATAAT+AGG | - | tig0021897:43023-43042 | None:intergenic | 20.0% |
| !! | AAATCAAAAATATATACGGA+AGG | - | tig0021897:43078-43097 | None:intergenic | 20.0% |
| !! | CATATAAAATACTGACAAAA+TGG | - | tig0021897:43318-43337 | None:intergenic | 20.0% |
| !! | CATAAATAAAGTACAGAAAT+TGG | - | tig0021897:43364-43383 | None:intergenic | 20.0% |
| !!! | CAATTTCTGTACTTTATTTA+TGG | + | tig0021897:43362-43381 | Msa1394840:three_prime_UTR | 20.0% |
| !! | TCAATATTTAGCACTAAAAA+TGG | - | tig0021897:43506-43525 | None:intergenic | 20.0% |
| ! | GTTAAATGGTTAATGACATT+AGG | - | tig0021897:40398-40417 | None:intergenic | 25.0% |
| !!! | AATCTGTTTTCTGATTTGAT+TGG | + | tig0021897:40826-40845 | Msa1394840:CDS | 25.0% |
| !! | TATAATTCAGTTTAGTTCGA+TGG | - | tig0021897:40990-41009 | None:intergenic | 25.0% |
| !!! | GTAAAAAGTTGAACCTTTTT+TGG | - | tig0021897:41073-41092 | None:intergenic | 25.0% |
| ! | GAAAGTGGAATATATTGTAT+TGG | + | tig0021897:41270-41289 | Msa1394840:intron | 25.0% |
| !! | TTGAAATGAGTCAGTTATTT+TGG | + | tig0021897:41358-41377 | Msa1394840:intron | 25.0% |
| !!! | TGAAATGAGTCAGTTATTTT+GGG | + | tig0021897:41359-41378 | Msa1394840:intron | 25.0% |
| !!! | GGACACTTTTTTTTAGAAAA+TGG | + | tig0021897:41380-41399 | Msa1394840:intron | 25.0% |
| ! | ACCACTTTGTAATATTGTTT+AGG | + | tig0021897:41470-41489 | Msa1394840:intron | 25.0% |
| ! | ACCTAAACAATATTACAAAG+TGG | - | tig0021897:41474-41493 | None:intergenic | 25.0% |
| ! | ACTAAGGTTAAACTAGTTAT+AGG | + | tig0021897:41526-41545 | Msa1394840:intron | 25.0% |
| ! | TCCTCATTAACTCTTATATT+TGG | + | tig0021897:41885-41904 | Msa1394840:intron | 25.0% |
| ! | TCCAAATATAAGAGTTAATG+AGG | - | tig0021897:41889-41908 | None:intergenic | 25.0% |
| ! | ATATTTGGACATTTATTCTG+AGG | + | tig0021897:41900-41919 | Msa1394840:intron | 25.0% |
| ! | ATAACAAGATAGACACATTA+AGG | - | tig0021897:42475-42494 | None:intergenic | 25.0% |
| ! | GTTGTCAAAATCATTATGTA+TGG | + | tig0021897:42852-42871 | Msa1394840:intron | 25.0% |
| ! | TCACAACATTTGCAAATAAT+TGG | + | tig0021897:42882-42901 | Msa1394840:intron | 25.0% |
| ! | TATCATAATATTATGGCAAG+TGG | + | tig0021897:43267-43286 | Msa1394840:exon | 25.0% |
| TGGTTAATGACATTAGGTTA+GGG | - | tig0021897:40392-40411 | None:intergenic | 30.0% | |
| ATGGTTAATGACATTAGGTT+AGG | - | tig0021897:40393-40412 | None:intergenic | 30.0% | |
| TTGAATTCAAAACAAAGGAG+CGG | - | tig0021897:40511-40530 | None:intergenic | 30.0% | |
| ATTCAATTCAATTCAATGGG+TGG | + | tig0021897:40535-40554 | Msa1394840:exon | 30.0% | |
| TCAAATCAGAAAACAGATTC+AGG | - | tig0021897:40825-40844 | None:intergenic | 30.0% | |
| AAGCTCAAAGTTTACTTTGA+CGG | + | tig0021897:40850-40869 | Msa1394840:CDS | 30.0% | |
| TGTATAAATAAAGGGGAAAG+TGG | + | tig0021897:41255-41274 | Msa1394840:intron | 30.0% | |
| ATATTGTTTAGGTGACTAGT+TGG | + | tig0021897:41481-41500 | Msa1394840:intron | 30.0% | |
| ACCCATTTAATCACTCTAAA+TGG | + | tig0021897:41556-41575 | Msa1394840:intron | 30.0% | |
| ! | CCCATTTAGAGTGATTAAAT+GGG | - | tig0021897:41560-41579 | None:intergenic | 30.0% |
| CCCATTTAATCACTCTAAAT+GGG | + | tig0021897:41557-41576 | Msa1394840:intron | 30.0% | |
| CCATTTAATCACTCTAAATG+GGG | + | tig0021897:41558-41577 | Msa1394840:intron | 30.0% | |
| ! | TTTCGCCCCTATAAAATTTT+CGG | - | tig0021897:41615-41634 | None:intergenic | 30.0% |
| ! | CCTGTAATATATGTCATTTC+CGG | - | tig0021897:41639-41658 | None:intergenic | 30.0% |
| CGGAAATGACATATATTACA+GGG | + | tig0021897:41637-41656 | Msa1394840:intron | 30.0% | |
| GGAAATGACATATATTACAG+GGG | + | tig0021897:41638-41657 | Msa1394840:intron | 30.0% | |
| GATATTCAACAACATGCTTA+AGG | + | tig0021897:42122-42141 | Msa1394840:CDS | 30.0% | |
| ! | AAACTCTAGAGAAGATACTT+GGG | - | tig0021897:42208-42227 | None:intergenic | 30.0% |
| TTCTGATTTCTTTCGAACAA+TGG | - | tig0021897:42247-42266 | None:intergenic | 30.0% | |
| ! | GTACAATTATGTTTTGTCTC+CGG | + | tig0021897:42422-42441 | Msa1394840:intron | 30.0% |
| ! | TACAATTATGTTTTGTCTCC+GGG | + | tig0021897:42423-42442 | Msa1394840:intron | 30.0% |
| AGAATACTTAAAATACAGCC+CGG | - | tig0021897:42444-42463 | None:intergenic | 30.0% | |
| ! | AATGTGTCTATCTTGTTATG+TGG | + | tig0021897:42476-42495 | Msa1394840:intron | 30.0% |
| GTTTCATGAGCATTTCATAA+TGG | + | tig0021897:42783-42802 | Msa1394840:intron | 30.0% | |
| TATTGTATTCTTGGTTATGC+TGG | + | tig0021897:42811-42830 | Msa1394840:intron | 30.0% | |
| ATTGTATTCTTGGTTATGCT+GGG | + | tig0021897:42812-42831 | Msa1394840:intron | 30.0% | |
| AACATTTGCAAATAATTGGC+AGG | + | tig0021897:42886-42905 | Msa1394840:intron | 30.0% | |
| GACATCAACAATCATCATAA+AGG | - | tig0021897:43050-43069 | None:intergenic | 30.0% | |
| ! | TTTTTGTTACTCAAATAGCG+AGG | + | tig0021897:43105-43124 | Msa1394840:intron | 30.0% |
| TAACATGTATGTTCGAAGTT+TGG | + | tig0021897:43411-43430 | Msa1394840:three_prime_UTR | 30.0% | |
| GTATGTAGATAACTCAAACT+TGG | - | tig0021897:43484-43503 | None:intergenic | 30.0% | |
| TATAGTCAAGTTTATCGCCA+CGG | + | tig0021897:40654-40673 | Msa1394840:CDS | 35.0% | |
| AATATCACGTCAATATCACG+CGG | - | tig0021897:40706-40725 | None:intergenic | 35.0% | |
| ATTTGCATAAGCTGAGAGAA+GGG | - | tig0021897:40743-40762 | None:intergenic | 35.0% | |
| TGCAAATCTTAATCGATTGC+TGG | + | tig0021897:40756-40775 | Msa1394840:CDS | 35.0% | |
| GAGATCCAACAAATAAAGGA+AGG | + | tig0021897:41039-41058 | Msa1394840:CDS | 35.0% | |
| ! | TGTTGCCTTCCTTTATTTGT+TGG | - | tig0021897:41047-41066 | None:intergenic | 35.0% |
| CAAAGTAGGTCAATTATACC+GGG | - | tig0021897:41211-41230 | None:intergenic | 35.0% | |
| CCAAAGTAGGTCAATTATAC+CGG | - | tig0021897:41212-41231 | None:intergenic | 35.0% | |
| TCTGTGTGAAAAACCAAAGT+AGG | - | tig0021897:41225-41244 | None:intergenic | 35.0% | |
| ! | CCCCATTTAGAGTGATTAAA+TGG | - | tig0021897:41561-41580 | None:intergenic | 35.0% |
| ! | AATTTTATAGGGGCGAAAAC+CGG | + | tig0021897:41617-41636 | Msa1394840:intron | 35.0% |
| CCGGAAATGACATATATTAC+AGG | + | tig0021897:41636-41655 | Msa1394840:intron | 35.0% | |
| TGTATGTGTGTATGTGTGTA+TGG | + | tig0021897:41709-41728 | Msa1394840:intron | 35.0% | |
| GTATGTGTGTATGTGTGTAT+GGG | + | tig0021897:41710-41729 | Msa1394840:intron | 35.0% | |
| CAAGCTGATCATCAAAAGAT+TGG | - | tig0021897:42038-42057 | None:intergenic | 35.0% | |
| TGATGATCAGCTTGATGAAT+TGG | + | tig0021897:42044-42063 | Msa1394840:CDS | 35.0% | |
| ! | AGAGAGAGTTTTCGAAACTT+GGG | + | tig0021897:42087-42106 | Msa1394840:CDS | 35.0% |
| ! | CAAACTCTAGAGAAGATACT+TGG | - | tig0021897:42209-42228 | None:intergenic | 35.0% |
| GATTTCTTTCGAACAATGGA+GGG | - | tig0021897:42243-42262 | None:intergenic | 35.0% | |
| TGATTTCTTTCGAACAATGG+AGG | - | tig0021897:42244-42263 | None:intergenic | 35.0% | |
| GAAATCAGAAGAAAGTTGCA+AGG | + | tig0021897:42257-42276 | Msa1394840:CDS | 35.0% | |
| !! | CATCATGATGTTTCTGAAAC+AGG | - | tig0021897:42293-42312 | None:intergenic | 35.0% |
| ! | AAAATTAATGCGAGAGTGTG+AGG | - | tig0021897:42623-42642 | None:intergenic | 35.0% |
| AATTGATGAGCTTGAGACTT+AGG | + | tig0021897:42707-42726 | Msa1394840:intron | 35.0% | |
| TCATGAGCATTTCATAATGG+TGG | + | tig0021897:42786-42805 | Msa1394840:intron | 35.0% | |
| ! | ATGGTGGTGTATTGTATTCT+TGG | + | tig0021897:42802-42821 | Msa1394840:intron | 35.0% |
| AATAGTATGTCACGATACCA+TGG | + | tig0021897:42945-42964 | Msa1394840:intron | 35.0% | |
| !!! | AATGCGTTCACTTTTTGGTA+AGG | - | tig0021897:43144-43163 | None:intergenic | 35.0% |
| ! | ATCTCCAATTGTACTGGTAA+CGG | - | tig0021897:43210-43229 | None:intergenic | 35.0% |
| ! | GTTCGAAGTTTGGATTTTCT+TGG | + | tig0021897:43421-43440 | Msa1394840:three_prime_UTR | 35.0% |
| ! | GGATTTTCTTGGCATTTTGT+AGG | + | tig0021897:43432-43451 | Msa1394840:three_prime_UTR | 35.0% |
| TACACGTTGGAGGAGTTAAA+TGG | - | tig0021897:40412-40431 | None:intergenic | 40.0% | |
| ! | AGCGCAATAATTACTGGTTG+CGG | - | tig0021897:40458-40477 | None:intergenic | 40.0% |
| AAAACAAAGGAGCGGAGATA+TGG | - | tig0021897:40503-40522 | None:intergenic | 40.0% | |
| ACTATAGCATCCACCTGTTT+CGG | - | tig0021897:40640-40659 | None:intergenic | 40.0% | |
| TTTGCATAAGCTGAGAGAAG+GGG | - | tig0021897:40742-40761 | None:intergenic | 40.0% | |
| GATTTGCATAAGCTGAGAGA+AGG | - | tig0021897:40744-40763 | None:intergenic | 40.0% | |
| AATCGATTGCTGGAGTTTCT+AGG | + | tig0021897:40766-40785 | Msa1394840:CDS | 40.0% | |
| TGTTCATCGACCACAGAAAT+GGG | - | tig0021897:40802-40821 | None:intergenic | 40.0% | |
| AAGTTTACTTTGACGGAGCA+TGG | + | tig0021897:40857-40876 | Msa1394840:CDS | 40.0% | |
| ! | CGTTTCTGGACAACTAAATC+GGG | - | tig0021897:40925-40944 | None:intergenic | 40.0% |
| ! | GCGTTTCTGGACAACTAAAT+CGG | - | tig0021897:40926-40945 | None:intergenic | 40.0% |
| CGCTGAGATCCAACAAATAA+AGG | + | tig0021897:41035-41054 | Msa1394840:CDS | 40.0% | |
| GAAGGCAACAAACCCAAAAA+AGG | + | tig0021897:41057-41076 | Msa1394840:CDS | 40.0% | |
| CCGGTATAATTGACCTACTT+TGG | + | tig0021897:41209-41228 | Msa1394840:intron | 40.0% | |
| ATTAATTACTCCCTCCGTCT+CGG | - | tig0021897:41416-41435 | None:intergenic | 40.0% | |
| TGTATGGGTGTATGTGTGTA+TGG | + | tig0021897:41725-41744 | Msa1394840:intron | 40.0% | |
| GTATGGGTGTATGTGTGTAT+GGG | + | tig0021897:41726-41745 | Msa1394840:intron | 40.0% | |
| TGATCATCAAAAGATTGGCG+TGG | - | tig0021897:42033-42052 | None:intergenic | 40.0% | |
| ! | GAGAGAGAGTTTTCGAAACT+TGG | + | tig0021897:42086-42105 | Msa1394840:CDS | 40.0% |
| CAACATGCTTAAGGATACAG+AGG | + | tig0021897:42131-42150 | Msa1394840:CDS | 40.0% | |
| !! | TGATGTTTCTGAAACAGGTC+AGG | - | tig0021897:42288-42307 | None:intergenic | 40.0% |
| CAAGATACCTGCAAGACATA+TGG | - | tig0021897:42344-42363 | None:intergenic | 40.0% | |
| AGTGTCAACAAACATCTCCA+TGG | - | tig0021897:42965-42984 | None:intergenic | 40.0% | |
| ! | ATGGAGATGTTTGTTGACAC+TGG | + | tig0021897:42964-42983 | Msa1394840:intron | 40.0% |
| ACTCAAATAGCGAGGAAACT+TGG | + | tig0021897:43113-43132 | Msa1394840:intron | 40.0% | |
| AAATAGCGAGGAAACTTGGA+GGG | + | tig0021897:43117-43136 | Msa1394840:intron | 40.0% | |
| ACCAAAAAGTGAACGCATTG+AGG | + | tig0021897:43145-43164 | Msa1394840:CDS | 40.0% | |
| !! | ACCTCAATGCGTTCACTTTT+TGG | - | tig0021897:43149-43168 | None:intergenic | 40.0% |
| AAAAGTGAACGCATTGAGGT+TGG | + | tig0021897:43149-43168 | Msa1394840:CDS | 40.0% | |
| GTTACCAGTACAATTGGAGA+TGG | + | tig0021897:43209-43228 | Msa1394840:CDS | 40.0% | |
| TTCTCCATCTCCAATTGTAC+TGG | - | tig0021897:43216-43235 | None:intergenic | 40.0% | |
| ATATTATGGCAAGTGGTGTG+TGG | + | tig0021897:43274-43293 | Msa1394840:exon | 40.0% | |
| ATGGTGTGTATGCACTTTGA+TGG | + | tig0021897:43381-43400 | Msa1394840:three_prime_UTR | 40.0% | |
| GAGATATGGTTAGGATTGGG+TGG | - | tig0021897:40489-40508 | None:intergenic | 45.0% | |
| GCGGAGATATGGTTAGGATT+GGG | - | tig0021897:40492-40511 | None:intergenic | 45.0% | |
| AGCGGAGATATGGTTAGGAT+TGG | - | tig0021897:40493-40512 | None:intergenic | 45.0% | |
| AAAGGAGCGGAGATATGGTT+AGG | - | tig0021897:40498-40517 | None:intergenic | 45.0% | |
| ! | CAAATCCATCGATTACGGGT+CGG | - | tig0021897:40603-40622 | None:intergenic | 45.0% |
| ! | CCGTCAAATCCATCGATTAC+GGG | - | tig0021897:40607-40626 | None:intergenic | 45.0% |
| ! | CCCGTAATCGATGGATTTGA+CGG | + | tig0021897:40604-40623 | Msa1394840:CDS | 45.0% |
| ! | CCCGTCAAATCCATCGATTA+CGG | - | tig0021897:40608-40627 | None:intergenic | 45.0% |
| ! | CCGTAATCGATGGATTTGAC+GGG | + | tig0021897:40605-40624 | Msa1394840:CDS | 45.0% |
| ! | CGTAATCGATGGATTTGACG+GGG | + | tig0021897:40606-40625 | Msa1394840:CDS | 45.0% |
| TTGCATAAGCTGAGAGAAGG+GGG | - | tig0021897:40741-40760 | None:intergenic | 45.0% | |
| TCAGTGTACTCCCATTTCTG+TGG | + | tig0021897:40789-40808 | Msa1394840:CDS | 45.0% | |
| GTGTTCATCGACCACAGAAA+TGG | - | tig0021897:40803-40822 | None:intergenic | 45.0% | |
| ! | CAGTTTAGTTCGATGGTCCT+CGG | - | tig0021897:40983-41002 | None:intergenic | 45.0% |
| GTAGGTCAATTATACCGGGA+CGG | - | tig0021897:41207-41226 | None:intergenic | 45.0% | |
| ATGGGTCAGTTATTCCGAGA+CGG | + | tig0021897:41399-41418 | Msa1394840:intron | 45.0% | |
| ATGAAGCATAGACTCCGACA+CGG | - | tig0021897:41832-41851 | None:intergenic | 45.0% | |
| !! | CTTTGAGGCCATTGTGTTGT+TGG | - | tig0021897:41959-41978 | None:intergenic | 45.0% |
| CACAGAACAATGCGACTTTG+AGG | - | tig0021897:41974-41993 | None:intergenic | 45.0% | |
| CAAAAGATTGGCGTGGCTTA+CGG | - | tig0021897:42026-42045 | None:intergenic | 45.0% | |
| AGAGTTGACGACTGTTCTGA+AGG | + | tig0021897:42176-42195 | Msa1394840:CDS | 45.0% | |
| AATGCTGCCATATGTCTTGC+AGG | + | tig0021897:42334-42353 | Msa1394840:CDS | 45.0% | |
| AAAGATATTGCTGGCACCTG+CGG | + | tig0021897:42519-42538 | Msa1394840:intron | 45.0% | |
| ATCCATGCAATATAGACCGC+AGG | - | tig0021897:42538-42557 | None:intergenic | 45.0% | |
| GTTGCTAACGTGCTATCACA+TGG | + | tig0021897:42586-42605 | Msa1394840:intron | 45.0% | |
| AGCTTGAGACTTAGGATTGC+AGG | + | tig0021897:42715-42734 | Msa1394840:intron | 45.0% | |
| CAAATAGCGAGGAAACTTGG+AGG | + | tig0021897:43116-43135 | Msa1394840:intron | 45.0% | |
| AATAGCGAGGAAACTTGGAG+GGG | + | tig0021897:43118-43137 | Msa1394840:intron | 45.0% | |
| !! | GGTAACGGACTCATTGTAGA+AGG | - | tig0021897:43195-43214 | None:intergenic | 45.0% |
| GAGTCCGTTACCAGTACAAT+TGG | + | tig0021897:43203-43222 | Msa1394840:CDS | 45.0% | |
| ! | ATGGTGACGACGATACACGT+TGG | - | tig0021897:40425-40444 | None:intergenic | 50.0% |
| TGGTTGCGGCTGCTAGATAA+TGG | - | tig0021897:40444-40463 | None:intergenic | 50.0% | |
| ! | CGCGAGAGCGCAATAATTAC+TGG | - | tig0021897:40464-40483 | None:intergenic | 50.0% |
| ! | GGTTTTCACTCCGAAACAGG+TGG | + | tig0021897:40627-40646 | Msa1394840:CDS | 50.0% |
| CTTCTTGCTCTCGTGAGAGA+AGG | - | tig0021897:40899-40918 | None:intergenic | 50.0% | |
| GGTGATTCTTAGTAGCCTCG+AGG | - | tig0021897:40948-40967 | None:intergenic | 50.0% | |
| CGAGGCTACTAAGAATCACC+TGG | + | tig0021897:40948-40967 | Msa1394840:CDS | 50.0% | |
| ! | AGCGGAGTGTCAATGTAGCT+AGG | - | tig0021897:41173-41192 | None:intergenic | 50.0% |
| GGGACGGAGGTAGTATTAAG+CGG | - | tig0021897:41191-41210 | None:intergenic | 50.0% | |
| GCTTAATACTACCTCCGTCC+CGG | + | tig0021897:41190-41209 | Msa1394840:intron | 50.0% | |
| GTCAGTTATTCCGAGACGGA+GGG | + | tig0021897:41403-41422 | Msa1394840:intron | 50.0% | |
| CACCCTGACCAACAACACAA+TGG | + | tig0021897:41948-41967 | Msa1394840:CDS | 50.0% | |
| ! | GGCCATTGTGTTGTTGGTCA+GGG | - | tig0021897:41953-41972 | None:intergenic | 50.0% |
| ! | AGGCCATTGTGTTGTTGGTC+AGG | - | tig0021897:41954-41973 | None:intergenic | 50.0% |
| GAGTGGCTTAGTGTCGTCAT+TGG | - | tig0021897:41998-42017 | None:intergenic | 50.0% | |
| TACAGAGGCCAAGCTTATGC+AGG | + | tig0021897:42146-42165 | Msa1394840:CDS | 50.0% | |
| TGTGCGAACCTGCATAAGCT+TGG | - | tig0021897:42157-42176 | None:intergenic | 50.0% | |
| ACATATGGCAGCATTGCTGC+AGG | - | tig0021897:42329-42348 | None:intergenic | 50.0% | |
| CACCTGCGGTCTATATTGCA+TGG | + | tig0021897:42533-42552 | Msa1394840:intron | 50.0% | |
| TGAGGTTGGCGCTAGAATGT+TGG | + | tig0021897:43163-43182 | Msa1394840:CDS | 50.0% | |
| GTGACGACGATACACGTTGG+AGG | - | tig0021897:40422-40441 | None:intergenic | 55.0% | |
| ! | CATCGATTACGGGTCGGAGT+TGG | - | tig0021897:40597-40616 | None:intergenic | 55.0% |
| CAACTCCGACCCGTAATCGA+TGG | + | tig0021897:40595-40614 | Msa1394840:CDS | 55.0% | |
| ! | CGGGGTTTTCACTCCGAAAC+AGG | + | tig0021897:40624-40643 | Msa1394840:CDS | 55.0% |
| ! | TCGCCACGGACTATGACGAT+AGG | + | tig0021897:40668-40687 | Msa1394840:CDS | 55.0% |
| ACGCCTATCGTCATAGTCCG+TGG | - | tig0021897:40674-40693 | None:intergenic | 55.0% | |
| AGTTGTCCAGAAACGCCTCG+AGG | + | tig0021897:40930-40949 | Msa1394840:CDS | 55.0% | |
| ! | TAGTAGCCTCGAGGCGTTTC+TGG | - | tig0021897:40939-40958 | None:intergenic | 55.0% |
| TCACCTGGAGTACACATCCG+AGG | + | tig0021897:40963-40982 | Msa1394840:CDS | 55.0% | |
| GGTCAATTATACCGGGACGG+AGG | - | tig0021897:41204-41223 | None:intergenic | 55.0% | |
| GGTCAGTTATTCCGAGACGG+AGG | + | tig0021897:41402-41421 | Msa1394840:intron | 55.0% | |
| ATTGGCGTGGCTTACGGTTG+TGG | - | tig0021897:42020-42039 | None:intergenic | 55.0% | |
| CGATTACGGGTCGGAGTTGG+TGG | - | tig0021897:40594-40613 | None:intergenic | 60.0% | |
| GGTCCTCGGATGTGTACTCC+AGG | - | tig0021897:40969-40988 | None:intergenic | 60.0% | |
| CACTGTCAGCCAGTCCGTGT+CGG | + | tig0021897:41815-41834 | Msa1394840:intron | 60.0% | |
| GCATAGACTCCGACACGGAC+TGG | - | tig0021897:41827-41846 | None:intergenic | 60.0% | |
| CGTGGCTTACGGTTGTGGAG+TGG | - | tig0021897:42015-42034 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0021897 | gene | 40382 | 43537 | 40382 | ID=Msa1394840;Name=Msa1394840 |
| tig0021897 | mRNA | 40382 | 43537 | 40382 | ID=Msa1394840-mRNA-1;Parent=Msa1394840;Name=Msa1394840-mRNA-1;_AED=0.01;_eAED=0.01;_QI=168|0.33|0.75|0.75|0.66|0.75|4|263|378 |
| tig0021897 | exon | 40382 | 41078 | 40382 | ID=Msa1394840-mRNA-1:exon:14529;Parent=Msa1394840-mRNA-1 |
| tig0021897 | exon | 41929 | 42355 | 41929 | ID=Msa1394840-mRNA-1:exon:14530;Parent=Msa1394840-mRNA-1 |
| tig0021897 | exon | 42662 | 42690 | 42662 | ID=Msa1394840-mRNA-1:exon:14531;Parent=Msa1394840-mRNA-1 |
| tig0021897 | exon | 43123 | 43537 | 43123 | ID=Msa1394840-mRNA-1:exon:14532;Parent=Msa1394840-mRNA-1 |
| tig0021897 | five_prime_UTR | 40382 | 40549 | 40382 | ID=Msa1394840-mRNA-1:five_prime_utr;Parent=Msa1394840-mRNA-1 |
| tig0021897 | CDS | 40550 | 41078 | 40550 | ID=Msa1394840-mRNA-1:cds;Parent=Msa1394840-mRNA-1 |
| tig0021897 | CDS | 41929 | 42355 | 41929 | ID=Msa1394840-mRNA-1:cds;Parent=Msa1394840-mRNA-1 |
| tig0021897 | CDS | 42662 | 42690 | 42662 | ID=Msa1394840-mRNA-1:cds;Parent=Msa1394840-mRNA-1 |
| tig0021897 | CDS | 43123 | 43274 | 43123 | ID=Msa1394840-mRNA-1:cds;Parent=Msa1394840-mRNA-1 |
| tig0021897 | three_prime_UTR | 43275 | 43537 | 43275 | ID=Msa1394840-mRNA-1:three_prime_utr;Parent=Msa1394840-mRNA-1 |
| Gene Sequence |
| Protein sequence |
