AlfalfaGEDB | Msa1328820

M. sativa cultivar zhongmu-4 / Msa1328820

KEGG: K11253|K11254
GO: -
PFAM: PF00125.27

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1328820	XP_010446577.2	90.357	280	0	1	1	253	1	280	6.98e-175	492

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1328820	sp\|P80553\|H3_NARPS	100.000	136	0	0	118	253	1	136	1.17e-93	274
Msa1328820	sp\|P80553\|H3_NARPS	90.441	136	10	1	1	133	1	136	6.77e-80	239

Showing 1 to 2 of 2 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1328820	A0A3S3Q207	95.703	256	8	1	1	253	1	256	9.80e-173	485

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa1205160	Msa1328820	0.806891	6.598953e-50	-8.615850e-47
Msa1250210	Msa1328820	0.881119	3.128603e-70	-8.615850e-47

Showing 1 to 2 of 2 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1328820	MtrunA17_Chr4g0054151	100.000	136	0	0	118	253	4	139	5.72e-95	275
Msa1328820	MtrunA17_Chr4g0054151	90.441	136	10	1	1	133	4	139	3.33e-81	240
Msa1328820	MtrunA17_Chr4g0054161	100.000	136	0	0	118	253	1	136	8.64e-95	274
Msa1328820	MtrunA17_Chr4g0054161	90.441	136	10	1	1	133	1	136	4.98e-81	239
Msa1328820	MtrunA17_Chr8g0363741	100.000	136	0	0	118	253	1	136	8.64e-95	274
Msa1328820	MtrunA17_Chr8g0363741	90.441	136	10	1	1	133	1	136	4.98e-81	239
Msa1328820	MtrunA17_Chr1g0156021	100.000	136	0	0	118	253	1	136	8.64e-95	274
Msa1328820	MtrunA17_Chr1g0156021	90.441	136	10	1	1	133	1	136	4.98e-81	239
Msa1328820	MtrunA17_Chr8g0388121	99.265	136	1	0	118	253	1	136	3.18e-94	273
Msa1328820	MtrunA17_Chr8g0388121	89.706	136	11	1	1	133	1	136	1.73e-80	238

Showing 1 to 10 of 52 entries

Previous1 2 3 4 5 6Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1328820	AT4G40030.3	100.000	136	0	0	118	253	1	136	1.19e-94	274
Msa1328820	AT4G40030.3	90.441	136	10	1	1	133	1	136	6.88e-81	239
Msa1328820	AT4G40030.1	100.000	136	0	0	118	253	1	136	1.19e-94	274
Msa1328820	AT4G40030.1	90.441	136	10	1	1	133	1	136	6.88e-81	239
Msa1328820	AT4G40030.4	100.000	136	0	0	118	253	1	136	1.19e-94	274
Msa1328820	AT4G40030.4	90.441	136	10	1	1	133	1	136	6.88e-81	239
Msa1328820	AT5G10980.1	100.000	136	0	0	118	253	1	136	1.19e-94	274
Msa1328820	AT5G10980.1	90.441	136	10	1	1	133	1	136	6.88e-81	239
Msa1328820	AT4G40040.2	100.000	136	0	0	118	253	1	136	1.19e-94	274
Msa1328820	AT4G40040.2	90.441	136	10	1	1	133	1	136	6.88e-81	239

Showing 1 to 10 of 44 entries

Previous1 2 3 4 5Next

Find 94 sgRNAs with CRISPR-Local

Find 319 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACCACATCGTTACCGCCC+CGG	0.580189	8_4:-46841721	Msa1328820:CDS
AAACCACATCGTTATCGCCC+AGG	0.603518	8_4:-46837978	Msa1328820:CDS
AACCGAAGAGCAACAGTTCC+TGG	0.350308	8_4:+46837960	None:intergenic
AAGGAAGCAACTTGCAACCA+AGG	0.574800	8_4:-46838141	Msa1328820:intron
AAGTCTGCACCAACTACTGG+TGG	0.611115	8_4:-46838008	Msa1328820:CDS
AAGTCTGCTCCCACTACTGG+TGG	0.603052	8_4:-46841751	Msa1328820:CDS
ACCGAAGAGCAACAGTTCCG+GGG	0.653413	8_4:+46841704	None:intergenic
ACCGAAGAGCAACAGTTCCT+GGG	0.564699	8_4:+46837961	None:intergenic
ACTGCTCGTAAGTCAACCGG+TGG	0.674713	8_4:-46838173	Msa1328820:CDS
ACTGCTCGTAAGTCTACTGG+TGG	0.660657	8_4:-46841929	Msa1328820:CDS

Showing 1 to 10 of 94 entries

Previous1 2 3 4 5…10Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
AGAAGAAAGCAAAAATTTCC+AGG	-	chr8_4:46837134-46837153	Msa1328820:three_prime_UTR	30.0%
AAAAGAAAAGAAAACGAACC+TGG	+	chr8_4:46837155-46837174	None:intergenic	30.0%
TTGATACGAAAAACAAAGCT+CGG	+	chr8_4:46837226-46837245	None:intergenic	30.0%
GAAATTAGGGTTTACGAATT+TGG	-	chr8_4:46837293-46837312	Msa1328820:three_prime_UTR	30.0%
CTTGTATTCATCCATGTTAT+AGG	-	chr8_4:46837552-46837571	Msa1328820:CDS	30.0%
TAGTTCTCTTTCCTATAACA+TGG	+	chr8_4:46837566-46837585	None:intergenic	30.0%
GTTGATTGTGTTTATGTAGA+TGG	-	chr8_4:46837739-46837758	Msa1328820:CDS	30.0%
CATTATGGTGATTGAATGTT+TGG	-	chr8_4:46837890-46837909	Msa1328820:intron	30.0%
ATCAGTTTAGATGACAGATT+TGG	-	chr8_4:46838320-46838339	Msa1328820:intron	30.0%
GTTTGATTAATTGTGGTGAT+AGG	-	chr8_4:46838649-46838668	Msa1328820:intron	30.0%

Showing 1 to 10 of 319 entries

Previous1 2 3 4 5…32Next

Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	46837091	46842636	46837091	ID=Msa1328820;Name=Msa1328820
chr8_4	mRNA	46837091	46842636	46837091	ID=Msa1328820-mRNA-1;Parent=Msa1328820;Name=Msa1328820-mRNA-1;_AED=0.23;_eAED=0.23;_QI=65\|0.87\|0.88\|1\|0.87\|0.88\|9\|367\|253
chr8_4	exon	46837091	46837628	46837091	ID=Msa1328820-mRNA-1:exon:13448;Parent=Msa1328820-mRNA-1
chr8_4	exon	46837730	46837820	46837730	ID=Msa1328820-mRNA-1:exon:13447;Parent=Msa1328820-mRNA-1
chr8_4	exon	46837963	46838039	46837963	ID=Msa1328820-mRNA-1:exon:13446;Parent=Msa1328820-mRNA-1
chr8_4	exon	46838142	46838213	46838142	ID=Msa1328820-mRNA-1:exon:13445;Parent=Msa1328820-mRNA-1
chr8_4	exon	46841240	46841350	46841240	ID=Msa1328820-mRNA-1:exon:13444;Parent=Msa1328820-mRNA-1
chr8_4	exon	46841454	46841544	46841454	ID=Msa1328820-mRNA-1:exon:13443;Parent=Msa1328820-mRNA-1
chr8_4	exon	46841706	46841782	46841706	ID=Msa1328820-mRNA-1:exon:13442;Parent=Msa1328820-mRNA-1
chr8_4	exon	46841898	46841969	46841898	ID=Msa1328820-mRNA-1:exon:13441;Parent=Msa1328820-mRNA-1
chr8_4	exon	46842572	46842636	46842572	ID=Msa1328820-mRNA-1:exon:13440;Parent=Msa1328820-mRNA-1
chr8_4	five_prime_UTR	46842572	46842636	46842572	ID=Msa1328820-mRNA-1:five_prime_utr;Parent=Msa1328820-mRNA-1
chr8_4	CDS	46841898	46841969	46841898	ID=Msa1328820-mRNA-1:cds;Parent=Msa1328820-mRNA-1
chr8_4	CDS	46841706	46841782	46841706	ID=Msa1328820-mRNA-1:cds;Parent=Msa1328820-mRNA-1
chr8_4	CDS	46841454	46841544	46841454	ID=Msa1328820-mRNA-1:cds;Parent=Msa1328820-mRNA-1
chr8_4	CDS	46841240	46841350	46841240	ID=Msa1328820-mRNA-1:cds;Parent=Msa1328820-mRNA-1
chr8_4	CDS	46838142	46838213	46838142	ID=Msa1328820-mRNA-1:cds;Parent=Msa1328820-mRNA-1
chr8_4	CDS	46837963	46838039	46837963	ID=Msa1328820-mRNA-1:cds;Parent=Msa1328820-mRNA-1
chr8_4	CDS	46837730	46837820	46837730	ID=Msa1328820-mRNA-1:cds;Parent=Msa1328820-mRNA-1
chr8_4	CDS	46837458	46837628	46837458	ID=Msa1328820-mRNA-1:cds;Parent=Msa1328820-mRNA-1
chr8_4	three_prime_UTR	46837091	46837457	46837091	ID=Msa1328820-mRNA-1:three_prime_utr;Parent=Msa1328820-mRNA-1

Gene Sequence

>Msa1328820

ATGGCACGTACCAAGCAAACTGCTCGTAAGTCTACTGGTGGAAAGGCACCTAGGAAGCAACTTGCAACCAAGGCTGCACGTAAGTCTGCTCCCACTACTGGTGGAGTTAAGAAACCACATCGTTACCGCCCCGGAACTGTTGCTCTTCGTGAGATTAGGAAGTATCAGAAGAGTACTGAGCTCTTGATCAGGAAGCTCCCCTTCCAGAGGTTGGTTCGTGAAATTGCTCAAGACTTCAAGACTGACCTTCGTTTCCAGAGTCATGCTGTGCTTGCATTGCAAGAGGCTGCTGAGGCATATCTTGTTGGTCTGTTTGAGGACACTAACTTGTGCGCTATCCATGCCAAGCGAATGGCACGTACCAAGCAAACTGCTCGTAAGTCAACCGGTGGAAAGGCACCAAGGAAGCAACTTGCAACCAAGGCTGCACGTAAGTCTGCACCAACTACTGGTGGAGTTAAGAAACCACATCGTTATCGCCCAGGAACTGTTGCTCTTCGTGAGATTAGGAAGTACCAGAAGAGTACTGAGCTCTTGATCAGGAAGCTCCCCTTCCAGAGATTGGTTCGTGAAATTGCTCAGGACTTCAAGACTGACCTTCGTTTCCAGAGTCATGCTGTGCTTGCATTGCAAGAGGCTGCTGAGGCATATCTTGTTGGTCTCTTTGAGGACACTAACTTGTGTGCTATCCATGCCAAGCGAGTTACTATTATGCCCAAGGACATCCAGTTGGCAAGGAGGATCCGTGGTGAGCGCGCCTAA

Protein sequence

>Msa1328820

MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRMARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSHAVLALQEAAEAYLVGLFEDTNLCAIHAKRVTIMPKDIQLARRIRGERA*