Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1328940 | XP_003629211.1 | 89.811 | 265 | 27 | 0 | 69 | 333 | 133 | 397 | 4.98e-176 | 503 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1328940 | sp|Q3EBZ2|SKI23_ARATH | 29.493 | 217 | 133 | 5 | 134 | 331 | 175 | 390 | 8.95e-22 | 98.2 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1328940 | G7LA96 | 89.811 | 265 | 27 | 0 | 69 | 333 | 133 | 397 | 2.38e-176 | 503 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa1252960 | Msa1328940 | 0.809142 | 2.189604e-50 | -8.615850e-47 |
| Msa1201200 | Msa1328940 | 0.843607 | 1.262918e-58 | -8.615850e-47 |
| Msa1201230 | Msa1328940 | 0.812086 | 5.059950e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1328940 | MtrunA17_Chr8g0371031 | 89.811 | 265 | 27 | 0 | 69 | 333 | 133 | 397 | 4.58e-180 | 503 |
| Msa1328940 | MtrunA17_Chr2g0300541 | 70.545 | 275 | 79 | 2 | 61 | 333 | 118 | 392 | 6.59e-142 | 406 |
| Msa1328940 | MtrunA17_Chr8g0371101 | 67.658 | 269 | 86 | 1 | 65 | 333 | 110 | 377 | 1.24e-133 | 385 |
| Msa1328940 | MtrunA17_Chr4g0053271 | 98.780 | 82 | 1 | 0 | 1 | 82 | 30 | 111 | 9.61e-52 | 176 |
| Msa1328940 | MtrunA17_Chr4g0047461 | 35.409 | 257 | 131 | 8 | 85 | 319 | 3 | 246 | 1.51e-33 | 124 |
| Msa1328940 | MtrunA17_Chr8g0378641 | 33.463 | 257 | 146 | 8 | 80 | 319 | 127 | 375 | 3.68e-30 | 118 |
| Msa1328940 | MtrunA17_Chr7g0261121 | 38.589 | 241 | 105 | 11 | 84 | 295 | 122 | 348 | 1.15e-29 | 116 |
| Msa1328940 | MtrunA17_Chr6g0488491 | 32.510 | 243 | 136 | 6 | 89 | 319 | 117 | 343 | 1.24e-26 | 108 |
| Msa1328940 | MtrunA17_Chr3g0088831 | 30.851 | 282 | 148 | 9 | 91 | 331 | 145 | 420 | 2.16e-26 | 108 |
| Msa1328940 | MtrunA17_Chr5g0435201 | 32.824 | 262 | 130 | 7 | 85 | 319 | 112 | 354 | 3.21e-26 | 107 |
| Msa1328940 | MtrunA17_Chr6g0460451 | 34.184 | 196 | 103 | 6 | 146 | 332 | 198 | 376 | 4.90e-20 | 89.7 |
| Msa1328940 | MtrunA17_Chr1g0157711 | 33.668 | 199 | 114 | 5 | 141 | 331 | 175 | 363 | 4.21e-19 | 87.0 |
| Msa1328940 | MtrunA17_Chr6g0460421 | 32.990 | 194 | 110 | 5 | 146 | 333 | 198 | 377 | 7.25e-19 | 86.7 |
| Msa1328940 | MtrunA17_Chr6g0457531 | 32.143 | 196 | 103 | 6 | 146 | 331 | 190 | 365 | 5.62e-18 | 84.0 |
| Msa1328940 | MtrunA17_Chr2g0303111 | 32.984 | 191 | 112 | 6 | 146 | 331 | 188 | 367 | 6.37e-18 | 83.6 |
| Msa1328940 | MtrunA17_Chr3g0088751 | 30.500 | 200 | 113 | 6 | 145 | 331 | 187 | 373 | 7.55e-17 | 80.5 |
| Msa1328940 | MtrunA17_Chr1g0146401 | 30.952 | 210 | 117 | 6 | 111 | 311 | 177 | 367 | 8.12e-17 | 80.5 |
| Msa1328940 | MtrunA17_Chr3g0088931 | 32.749 | 171 | 84 | 5 | 151 | 316 | 199 | 343 | 1.24e-15 | 77.0 |
| Msa1328940 | MtrunA17_Chr3g0088561 | 29.609 | 179 | 104 | 3 | 164 | 331 | 5 | 172 | 1.44e-15 | 73.9 |
| Msa1328940 | MtrunA17_Chr6g0457501 | 30.348 | 201 | 117 | 6 | 146 | 332 | 190 | 381 | 4.26e-15 | 75.9 |
| Msa1328940 | MtrunA17_Chr3g0088711 | 30.058 | 173 | 85 | 5 | 154 | 323 | 22 | 161 | 1.51e-14 | 71.2 |
| Msa1328940 | MtrunA17_Chr3g0092331 | 33.526 | 173 | 77 | 5 | 164 | 312 | 3 | 161 | 2.38e-14 | 70.9 |
| Msa1328940 | MtrunA17_Chr3g0143621 | 30.435 | 161 | 104 | 3 | 143 | 299 | 202 | 358 | 5.69e-14 | 72.4 |
| Msa1328940 | MtrunA17_Chr3g0089001 | 31.429 | 175 | 91 | 6 | 150 | 315 | 214 | 368 | 1.04e-13 | 71.2 |
| Msa1328940 | MtrunA17_Chr3g0088671 | 32.414 | 145 | 75 | 4 | 154 | 297 | 197 | 319 | 1.12e-13 | 71.2 |
| Msa1328940 | MtrunA17_Chr3g0088951 | 30.769 | 182 | 97 | 5 | 143 | 315 | 179 | 340 | 1.29e-13 | 70.9 |
| Msa1328940 | MtrunA17_Chr6g0457541 | 34.228 | 149 | 73 | 4 | 148 | 293 | 194 | 320 | 3.10e-13 | 69.7 |
| Msa1328940 | MtrunA17_Chr1g0151701 | 29.630 | 189 | 103 | 6 | 161 | 331 | 2 | 178 | 4.72e-13 | 67.0 |
| Msa1328940 | MtrunA17_Chr3g0088631 | 30.189 | 159 | 91 | 4 | 151 | 306 | 211 | 352 | 6.74e-13 | 68.9 |
| Msa1328940 | MtrunA17_Chr3g0088841 | 34.307 | 137 | 71 | 3 | 163 | 297 | 207 | 326 | 9.25e-13 | 68.6 |
| Msa1328940 | MtrunA17_Chr3g0088601 | 30.000 | 180 | 97 | 5 | 151 | 318 | 223 | 385 | 3.46e-12 | 67.0 |
| Msa1328940 | MtrunA17_Chr3g0088581 | 26.036 | 169 | 113 | 4 | 151 | 312 | 27 | 190 | 3.85e-12 | 64.7 |
| Msa1328940 | MtrunA17_Chr3g0088741 | 30.921 | 152 | 77 | 5 | 154 | 301 | 197 | 324 | 7.01e-12 | 65.9 |
| Msa1328940 | MtrunA17_Chr3g0088621 | 26.705 | 176 | 107 | 4 | 151 | 312 | 209 | 376 | 1.19e-11 | 65.1 |
| Msa1328940 | MtrunA17_Chr1g0170781 | 26.977 | 215 | 126 | 9 | 131 | 331 | 199 | 396 | 2.10e-11 | 64.3 |
| Msa1328940 | MtrunA17_Chr5g0417881 | 32.895 | 152 | 88 | 5 | 146 | 295 | 13 | 152 | 2.24e-11 | 62.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1328940 | AT5G67220.1 | 82.258 | 62 | 11 | 0 | 20 | 81 | 68 | 129 | 9.51e-29 | 115 |
| Msa1328940 | AT2G17036.2 | 31.336 | 217 | 125 | 7 | 134 | 331 | 172 | 383 | 8.77e-23 | 98.2 |
| Msa1328940 | AT2G17030.1 | 29.493 | 217 | 133 | 5 | 134 | 331 | 175 | 390 | 9.10e-23 | 98.2 |
| Msa1328940 | AT2G17036.1 | 31.336 | 217 | 125 | 7 | 134 | 331 | 173 | 384 | 9.12e-23 | 98.2 |
| Msa1328940 | AT1G65770.1 | 35.503 | 169 | 96 | 4 | 145 | 308 | 174 | 334 | 7.51e-22 | 95.1 |
| Msa1328940 | AT4G35733.1 | 31.707 | 246 | 136 | 11 | 91 | 320 | 121 | 350 | 4.87e-20 | 90.1 |
| Msa1328940 | AT2G26160.1 | 32.287 | 223 | 130 | 8 | 86 | 297 | 108 | 320 | 6.03e-20 | 89.4 |
| Msa1328940 | AT1G44080.1 | 29.297 | 256 | 160 | 8 | 71 | 317 | 85 | 328 | 1.26e-18 | 85.9 |
| Msa1328940 | AT3G25750.2 | 27.236 | 246 | 154 | 6 | 80 | 312 | 108 | 341 | 1.45e-15 | 77.0 |
| Msa1328940 | AT3G25750.1 | 30.286 | 175 | 99 | 5 | 149 | 312 | 165 | 327 | 3.16e-15 | 75.9 |
| Msa1328940 | AT5G60060.1 | 34.524 | 168 | 92 | 8 | 128 | 287 | 173 | 330 | 5.17e-15 | 75.5 |
| Msa1328940 | AT1G65740.1 | 32.895 | 152 | 91 | 5 | 163 | 308 | 200 | 346 | 2.47e-13 | 70.5 |
| Msa1328940 | AT2G17690.1 | 27.083 | 288 | 146 | 9 | 86 | 315 | 125 | 406 | 4.37e-13 | 70.1 |
Find 72 sgRNAs with CRISPR-Local
Find 178 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGATGTTCGTATGTATAATT+TGG | 0.212475 | 8_4:+46972332 | Msa1328940:CDS |
| CATCGGAGCAACAATCAATT+TGG | 0.224918 | 8_4:-46971335 | None:intergenic |
| TCACCTCCTTTGTGTGGATT+TGG | 0.230521 | 8_4:+46972024 | Msa1328940:CDS |
| AAGGGAACTGCATCTACTTT+AGG | 0.247416 | 8_4:+46972301 | Msa1328940:CDS |
| ATCTTTCAAGAGGGTAAATT+AGG | 0.254641 | 8_4:+46971847 | Msa1328940:CDS |
| GTCTCAACTAAAGACTTAAT+TGG | 0.265830 | 8_4:+46972273 | Msa1328940:CDS |
| TGGATGAAGAATGGGGAAAA+TGG | 0.270862 | 8_4:+46972190 | Msa1328940:CDS |
| GATCCGGAGAAGTTCGGGTT+TGG | 0.271233 | 8_4:-46971222 | None:intergenic |
| CAATTTGGGTCGACCCAATT+TGG | 0.274011 | 8_4:-46971320 | None:intergenic |
| TTCGGGATCCGGAGAAGTTC+GGG | 0.306315 | 8_4:-46971227 | None:intergenic |
| GTGGGCTCATTGGACCAAAT+TGG | 0.318961 | 8_4:+46971306 | Msa1328940:CDS |
| ATCCGGAGAAGTTCGGGTTT+GGG | 0.347013 | 8_4:-46971221 | None:intergenic |
| TTTCGGGATCCGGAGAAGTT+CGG | 0.348957 | 8_4:-46971228 | None:intergenic |
| TATGGAACTTGTTGGATCAT+AGG | 0.360148 | 8_4:+46971701 | Msa1328940:CDS |
| ACAGTAGTCCAAGGAGAGTT+AGG | 0.371051 | 8_4:-46971802 | None:intergenic |
| ATAAATGGGGAACTATTTCA+TGG | 0.373052 | 8_4:+46971968 | Msa1328940:CDS |
| TTGAACGCGCGTGGGCTCAT+TGG | 0.378930 | 8_4:+46971296 | Msa1328940:CDS |
| AGGGAACTGCATCTACTTTA+GGG | 0.379511 | 8_4:+46972302 | Msa1328940:CDS |
| TTATAAGTTGGATGAAGAAT+GGG | 0.394790 | 8_4:+46972182 | Msa1328940:CDS |
| TTTATAAGTTGGATGAAGAA+TGG | 0.397683 | 8_4:+46972181 | Msa1328940:CDS |
| TGGGCTCATTGGACCAAATT+GGG | 0.400695 | 8_4:+46971307 | Msa1328940:CDS |
| GTGCATCTGCGGTGAGGGTT+AGG | 0.402357 | 8_4:-46971270 | None:intergenic |
| AAAGACTTAATTGGATATCA+AGG | 0.406036 | 8_4:+46972282 | Msa1328940:CDS |
| GGATGATCATAGAATCACTA+TGG | 0.406868 | 8_4:+46972353 | Msa1328940:CDS |
| TGGAAACAAGAAGCATTTGA+TGG | 0.415140 | 8_4:+46972044 | Msa1328940:CDS |
| TGTTCTATCCTAACTCTCCT+TGG | 0.421475 | 8_4:+46971794 | Msa1328940:CDS |
| TACCATGCTATGGAACTTGT+TGG | 0.443560 | 8_4:+46971693 | Msa1328940:CDS |
| TGACGATGTTATTGTGTTCA+AGG | 0.452162 | 8_4:+46971927 | Msa1328940:CDS |
| ATCGGAGCAACAATCAATTT+GGG | 0.453682 | 8_4:-46971334 | None:intergenic |
| CTTGTATTGACAAGACTTTG+TGG | 0.456773 | 8_4:+46972388 | Msa1328940:CDS |
| TGCTCCGATGGTCGATAACT+CGG | 0.461847 | 8_4:+46971348 | Msa1328940:CDS |
| CAAATTGATTGTTGCTCCGA+TGG | 0.464054 | 8_4:+46971336 | Msa1328940:CDS |
| ATGTTTCAAAGTTTATAAGT+TGG | 0.473392 | 8_4:+46972170 | Msa1328940:CDS |
| GGATGAAGAATGGGGAAAAT+GGG | 0.473828 | 8_4:+46972191 | Msa1328940:CDS |
| GGCCCAAACCCGAACTTCTC+CGG | 0.483492 | 8_4:+46971219 | Msa1328940:CDS |
| CTTTGTGGTCTCGTTCACCT+TGG | 0.488154 | 8_4:+46972403 | Msa1328940:CDS |
| ATGGAACTTGTTGGATCATA+GGG | 0.493145 | 8_4:+46971702 | Msa1328940:CDS |
| CTGTGAAAGTAGTGAAGACA+TGG | 0.493157 | 8_4:+46972101 | Msa1328940:CDS |
| CACAAAGTCTTGTCAATACA+AGG | 0.513043 | 8_4:-46972387 | None:intergenic |
| AGGATGCTGTGTCGGAAGTA+CGG | 0.526837 | 8_4:+46971382 | Msa1328940:CDS |
| AAAATCCTCCCATGCAACAT+TGG | 0.527667 | 8_4:-46971424 | None:intergenic |
| GCGTTCAACGCGTGCATCTG+CGG | 0.530271 | 8_4:-46971281 | None:intergenic |
| AACGCGTGCATCTGCGGTGA+GGG | 0.537505 | 8_4:-46971275 | None:intergenic |
| CAATTCTCACCTCCTTTGTG+TGG | 0.538436 | 8_4:+46972018 | Msa1328940:CDS |
| CTCTCCTTGGACTACTGTTG+AGG | 0.542828 | 8_4:+46971807 | Msa1328940:CDS |
| ACAACACTTCTACCATGCTA+TGG | 0.549319 | 8_4:+46971683 | Msa1328940:CDS |
| GCATATACTCCAATGTTGCA+TGG | 0.551190 | 8_4:+46971415 | Msa1328940:CDS |
| CATATACTCCAATGTTGCAT+GGG | 0.566704 | 8_4:+46971416 | Msa1328940:CDS |
| ATCCAACAAGTTCCATAGCA+TGG | 0.567906 | 8_4:-46971695 | None:intergenic |
| GACGATGTTATTGTGTTCAA+GGG | 0.569592 | 8_4:+46971928 | Msa1328940:CDS |
| TATAAGTTGGATGAAGAATG+GGG | 0.581944 | 8_4:+46972183 | Msa1328940:CDS |
| ATACTCCAATGTTGCATGGG+AGG | 0.582365 | 8_4:+46971419 | Msa1328940:CDS |
| GCCATCTAACATCTCATCCA+AGG | 0.582881 | 8_4:-46972420 | None:intergenic |
| CAACGCGTGCATCTGCGGTG+AGG | 0.590300 | 8_4:-46971276 | None:intergenic |
| TACCGTACAGGATGCTGTGT+CGG | 0.593999 | 8_4:+46971374 | Msa1328940:CDS |
| AGCTTGTTGTATCTTTCAAG+AGG | 0.595503 | 8_4:+46971837 | Msa1328940:CDS |
| AAGACTTAATTGGATATCAA+GGG | 0.598333 | 8_4:+46972283 | Msa1328940:CDS |
| GCTTGTTGTATCTTTCAAGA+GGG | 0.601791 | 8_4:+46971838 | Msa1328940:CDS |
| TTCCGACACAGCATCCTGTA+CGG | 0.610240 | 8_4:-46971376 | None:intergenic |
| GCGGTGAGGGTTAGGTTACG+TGG | 0.623400 | 8_4:-46971262 | None:intergenic |
| TGCACGCGTTGAACGCGCGT+GGG | 0.625096 | 8_4:+46971288 | Msa1328940:CDS |
| AACTCCGAGTTATCGACCAT+CGG | 0.627617 | 8_4:-46971352 | None:intergenic |
| AAATTAGGATTCATGAAACA+TGG | 0.629944 | 8_4:+46971862 | Msa1328940:CDS |
| TTTCCAAATCCACACAAAGG+AGG | 0.638096 | 8_4:-46972027 | None:intergenic |
| CAATCCTCAACAGTAGTCCA+AGG | 0.640699 | 8_4:-46971811 | None:intergenic |
| AAAGTAGTGAAGACATGGGA+AGG | 0.643211 | 8_4:+46972106 | Msa1328940:CDS |
| CTACGATCGAGACACTGATG+TGG | 0.646731 | 8_4:+46972146 | Msa1328940:CDS |
| TTGTTTCCAAATCCACACAA+AGG | 0.650065 | 8_4:-46972030 | None:intergenic |
| ATAACTCGGAGTTACCGTAC+AGG | 0.658235 | 8_4:+46971362 | Msa1328940:CDS |
| AAGCATTTGATGGAGTCATG+TGG | 0.661502 | 8_4:+46972054 | Msa1328940:CDS |
| GTGAGGGTTAGGTTACGTGG+AGG | 0.707699 | 8_4:-46971259 | None:intergenic |
| TGTGAAAGTAGTGAAGACAT+GGG | 0.714849 | 8_4:+46972102 | Msa1328940:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGTTTTATGTTACTGATAAA+TGG | + | chr8_4:46971953-46971972 | Msa1328940:CDS | 20.0% |
| !!! | GTTTTATGTTACTGATAAAT+GGG | + | chr8_4:46971954-46971973 | Msa1328940:CDS | 20.0% |
| !!! | TTTTATGTTACTGATAAATG+GGG | + | chr8_4:46971955-46971974 | Msa1328940:CDS | 20.0% |
| !! | ATGTTTCAAAGTTTATAAGT+TGG | + | chr8_4:46972170-46972189 | Msa1328940:CDS | 20.0% |
| !!! | AGTTTTATGTTACTGATAAA+TGG | + | chr8_4:46971953-46971972 | Msa1328940:CDS | 20.0% |
| !!! | GTTTTATGTTACTGATAAAT+GGG | + | chr8_4:46971954-46971973 | Msa1328940:CDS | 20.0% |
| !!! | TTTTATGTTACTGATAAATG+GGG | + | chr8_4:46971955-46971974 | Msa1328940:CDS | 20.0% |
| !! | ATGTTTCAAAGTTTATAAGT+TGG | + | chr8_4:46972170-46972189 | Msa1328940:CDS | 20.0% |
| !!! | TAAGAGGGTATGATAATTTT+CGG | - | chr8_4:46971657-46971676 | None:intergenic | 25.0% |
| ! | AAATTAGGATTCATGAAACA+TGG | + | chr8_4:46971862-46971881 | Msa1328940:CDS | 25.0% |
| !! | TTTATAAGTTGGATGAAGAA+TGG | + | chr8_4:46972181-46972200 | Msa1328940:CDS | 25.0% |
| !! | TTATAAGTTGGATGAAGAAT+GGG | + | chr8_4:46972182-46972201 | Msa1328940:CDS | 25.0% |
| ! | AAAGACTTAATTGGATATCA+AGG | + | chr8_4:46972282-46972301 | Msa1328940:CDS | 25.0% |
| ! | AAGACTTAATTGGATATCAA+GGG | + | chr8_4:46972283-46972302 | Msa1328940:CDS | 25.0% |
| ! | TGATGTTCGTATGTATAATT+TGG | + | chr8_4:46972332-46972351 | Msa1328940:CDS | 25.0% |
| !!! | TAAGAGGGTATGATAATTTT+CGG | - | chr8_4:46971657-46971676 | None:intergenic | 25.0% |
| ! | AAATTAGGATTCATGAAACA+TGG | + | chr8_4:46971862-46971881 | Msa1328940:CDS | 25.0% |
| !! | TTTATAAGTTGGATGAAGAA+TGG | + | chr8_4:46972181-46972200 | Msa1328940:CDS | 25.0% |
| !! | TTATAAGTTGGATGAAGAAT+GGG | + | chr8_4:46972182-46972201 | Msa1328940:CDS | 25.0% |
| ! | AAAGACTTAATTGGATATCA+AGG | + | chr8_4:46972282-46972301 | Msa1328940:CDS | 25.0% |
| ! | AAGACTTAATTGGATATCAA+GGG | + | chr8_4:46972283-46972302 | Msa1328940:CDS | 25.0% |
| ! | TGATGTTCGTATGTATAATT+TGG | + | chr8_4:46972332-46972351 | Msa1328940:CDS | 25.0% |
| CATTAAAAATACCTTGCAAG+TGG | - | chr8_4:46971485-46971504 | None:intergenic | 30.0% | |
| ATCTTTCAAGAGGGTAAATT+AGG | + | chr8_4:46971847-46971866 | Msa1328940:CDS | 30.0% | |
| ! | TGAAACATGGTGATGAAAAA+TGG | + | chr8_4:46971875-46971894 | Msa1328940:CDS | 30.0% |
| ATAAATGGGGAACTATTTCA+TGG | + | chr8_4:46971968-46971987 | Msa1328940:CDS | 30.0% | |
| ! | TATAAGTTGGATGAAGAATG+GGG | + | chr8_4:46972183-46972202 | Msa1328940:CDS | 30.0% |
| GTCTCAACTAAAGACTTAAT+TGG | + | chr8_4:46972273-46972292 | Msa1328940:CDS | 30.0% | |
| CATTAAAAATACCTTGCAAG+TGG | - | chr8_4:46971485-46971504 | None:intergenic | 30.0% | |
| ATCTTTCAAGAGGGTAAATT+AGG | + | chr8_4:46971847-46971866 | Msa1328940:CDS | 30.0% | |
| ! | TGAAACATGGTGATGAAAAA+TGG | + | chr8_4:46971875-46971894 | Msa1328940:CDS | 30.0% |
| ATAAATGGGGAACTATTTCA+TGG | + | chr8_4:46971968-46971987 | Msa1328940:CDS | 30.0% | |
| ! | TATAAGTTGGATGAAGAATG+GGG | + | chr8_4:46972183-46972202 | Msa1328940:CDS | 30.0% |
| GTCTCAACTAAAGACTTAAT+TGG | + | chr8_4:46972273-46972292 | Msa1328940:CDS | 30.0% | |
| ATCGGAGCAACAATCAATTT+GGG | - | chr8_4:46971337-46971356 | None:intergenic | 35.0% | |
| CATATACTCCAATGTTGCAT+GGG | + | chr8_4:46971416-46971435 | Msa1328940:CDS | 35.0% | |
| ATAGGACTCAACAAACTTAC+AGG | - | chr8_4:46971628-46971647 | None:intergenic | 35.0% | |
| ! | GATAATTTTCGGTCAGAGAT+AGG | - | chr8_4:46971646-46971665 | None:intergenic | 35.0% |
| ! | AAGTGTTGTTACTGCTAAGA+GGG | - | chr8_4:46971672-46971691 | None:intergenic | 35.0% |
| !! | TATGGAACTTGTTGGATCAT+AGG | + | chr8_4:46971701-46971720 | Msa1328940:CDS | 35.0% |
| !! | ATGGAACTTGTTGGATCATA+GGG | + | chr8_4:46971702-46971721 | Msa1328940:CDS | 35.0% |
| !! | AGCTTGTTGTATCTTTCAAG+AGG | + | chr8_4:46971837-46971856 | Msa1328940:CDS | 35.0% |
| !! | GCTTGTTGTATCTTTCAAGA+GGG | + | chr8_4:46971838-46971857 | Msa1328940:CDS | 35.0% |
| TGATGAAAAATGGACACTTG+TGG | + | chr8_4:46971885-46971904 | Msa1328940:CDS | 35.0% | |
| TGACGATGTTATTGTGTTCA+AGG | + | chr8_4:46971927-46971946 | Msa1328940:CDS | 35.0% | |
| GACGATGTTATTGTGTTCAA+GGG | + | chr8_4:46971928-46971947 | Msa1328940:CDS | 35.0% | |
| TTGTTTCCAAATCCACACAA+AGG | - | chr8_4:46972033-46972052 | None:intergenic | 35.0% | |
| !! | TGGAAACAAGAAGCATTTGA+TGG | + | chr8_4:46972044-46972063 | Msa1328940:CDS | 35.0% |
| TGTGAAAGTAGTGAAGACAT+GGG | + | chr8_4:46972102-46972121 | Msa1328940:CDS | 35.0% | |
| GGATGATCATAGAATCACTA+TGG | + | chr8_4:46972353-46972372 | Msa1328940:CDS | 35.0% | |
| ! | CACAAAGTCTTGTCAATACA+AGG | - | chr8_4:46972390-46972409 | None:intergenic | 35.0% |
| ! | CTTGTATTGACAAGACTTTG+TGG | + | chr8_4:46972388-46972407 | Msa1328940:CDS | 35.0% |
| ATCGGAGCAACAATCAATTT+GGG | - | chr8_4:46971337-46971356 | None:intergenic | 35.0% | |
| CATATACTCCAATGTTGCAT+GGG | + | chr8_4:46971416-46971435 | Msa1328940:CDS | 35.0% | |
| ATAGGACTCAACAAACTTAC+AGG | - | chr8_4:46971628-46971647 | None:intergenic | 35.0% | |
| ! | GATAATTTTCGGTCAGAGAT+AGG | - | chr8_4:46971646-46971665 | None:intergenic | 35.0% |
| ! | AAGTGTTGTTACTGCTAAGA+GGG | - | chr8_4:46971672-46971691 | None:intergenic | 35.0% |
| !! | TATGGAACTTGTTGGATCAT+AGG | + | chr8_4:46971701-46971720 | Msa1328940:CDS | 35.0% |
| !! | ATGGAACTTGTTGGATCATA+GGG | + | chr8_4:46971702-46971721 | Msa1328940:CDS | 35.0% |
| !! | AGCTTGTTGTATCTTTCAAG+AGG | + | chr8_4:46971837-46971856 | Msa1328940:CDS | 35.0% |
| !! | GCTTGTTGTATCTTTCAAGA+GGG | + | chr8_4:46971838-46971857 | Msa1328940:CDS | 35.0% |
| TGATGAAAAATGGACACTTG+TGG | + | chr8_4:46971885-46971904 | Msa1328940:CDS | 35.0% | |
| TGACGATGTTATTGTGTTCA+AGG | + | chr8_4:46971927-46971946 | Msa1328940:CDS | 35.0% | |
| GACGATGTTATTGTGTTCAA+GGG | + | chr8_4:46971928-46971947 | Msa1328940:CDS | 35.0% | |
| TTGTTTCCAAATCCACACAA+AGG | - | chr8_4:46972033-46972052 | None:intergenic | 35.0% | |
| !! | TGGAAACAAGAAGCATTTGA+TGG | + | chr8_4:46972044-46972063 | Msa1328940:CDS | 35.0% |
| TGTGAAAGTAGTGAAGACAT+GGG | + | chr8_4:46972102-46972121 | Msa1328940:CDS | 35.0% | |
| GGATGATCATAGAATCACTA+TGG | + | chr8_4:46972353-46972372 | Msa1328940:CDS | 35.0% | |
| ! | CACAAAGTCTTGTCAATACA+AGG | - | chr8_4:46972390-46972409 | None:intergenic | 35.0% |
| ! | CTTGTATTGACAAGACTTTG+TGG | + | chr8_4:46972388-46972407 | Msa1328940:CDS | 35.0% |
| CATCGGAGCAACAATCAATT+TGG | - | chr8_4:46971338-46971357 | None:intergenic | 40.0% | |
| CAAATTGATTGTTGCTCCGA+TGG | + | chr8_4:46971336-46971355 | Msa1328940:CDS | 40.0% | |
| GCATATACTCCAATGTTGCA+TGG | + | chr8_4:46971415-46971434 | Msa1328940:CDS | 40.0% | |
| AAAATCCTCCCATGCAACAT+TGG | - | chr8_4:46971427-46971446 | None:intergenic | 40.0% | |
| ! | TCACTGAGGCTGAAAAGTAT+AGG | + | chr8_4:46971446-46971465 | Msa1328940:intron | 40.0% |
| TGAAGAATTCACCACTTGCA+AGG | + | chr8_4:46971471-46971490 | Msa1328940:intron | 40.0% | |
| !! | GAAGTGTTGTTACTGCTAAG+AGG | - | chr8_4:46971673-46971692 | None:intergenic | 40.0% |
| ACAACACTTCTACCATGCTA+TGG | + | chr8_4:46971683-46971702 | Msa1328940:CDS | 40.0% | |
| TACCATGCTATGGAACTTGT+TGG | + | chr8_4:46971693-46971712 | Msa1328940:CDS | 40.0% | |
| ATCCAACAAGTTCCATAGCA+TGG | - | chr8_4:46971698-46971717 | None:intergenic | 40.0% | |
| TGTTCTATCCTAACTCTCCT+TGG | + | chr8_4:46971794-46971813 | Msa1328940:CDS | 40.0% | |
| TTTCCAAATCCACACAAAGG+AGG | - | chr8_4:46972030-46972049 | None:intergenic | 40.0% | |
| AAGCATTTGATGGAGTCATG+TGG | + | chr8_4:46972054-46972073 | Msa1328940:CDS | 40.0% | |
| CTGTGAAAGTAGTGAAGACA+TGG | + | chr8_4:46972101-46972120 | Msa1328940:CDS | 40.0% | |
| AAAGTAGTGAAGACATGGGA+AGG | + | chr8_4:46972106-46972125 | Msa1328940:CDS | 40.0% | |
| TGGATGAAGAATGGGGAAAA+TGG | + | chr8_4:46972190-46972209 | Msa1328940:CDS | 40.0% | |
| GGATGAAGAATGGGGAAAAT+GGG | + | chr8_4:46972191-46972210 | Msa1328940:CDS | 40.0% | |
| AAGGGAACTGCATCTACTTT+AGG | + | chr8_4:46972301-46972320 | Msa1328940:CDS | 40.0% | |
| AGGGAACTGCATCTACTTTA+GGG | + | chr8_4:46972302-46972321 | Msa1328940:CDS | 40.0% | |
| CATCGGAGCAACAATCAATT+TGG | - | chr8_4:46971338-46971357 | None:intergenic | 40.0% | |
| CAAATTGATTGTTGCTCCGA+TGG | + | chr8_4:46971336-46971355 | Msa1328940:CDS | 40.0% | |
| GCATATACTCCAATGTTGCA+TGG | + | chr8_4:46971415-46971434 | Msa1328940:CDS | 40.0% | |
| AAAATCCTCCCATGCAACAT+TGG | - | chr8_4:46971427-46971446 | None:intergenic | 40.0% | |
| ! | TCACTGAGGCTGAAAAGTAT+AGG | + | chr8_4:46971446-46971465 | Msa1328940:intron | 40.0% |
| TGAAGAATTCACCACTTGCA+AGG | + | chr8_4:46971471-46971490 | Msa1328940:intron | 40.0% | |
| !! | GAAGTGTTGTTACTGCTAAG+AGG | - | chr8_4:46971673-46971692 | None:intergenic | 40.0% |
| ACAACACTTCTACCATGCTA+TGG | + | chr8_4:46971683-46971702 | Msa1328940:CDS | 40.0% | |
| TACCATGCTATGGAACTTGT+TGG | + | chr8_4:46971693-46971712 | Msa1328940:CDS | 40.0% | |
| ATCCAACAAGTTCCATAGCA+TGG | - | chr8_4:46971698-46971717 | None:intergenic | 40.0% | |
| TGTTCTATCCTAACTCTCCT+TGG | + | chr8_4:46971794-46971813 | Msa1328940:CDS | 40.0% | |
| TTTCCAAATCCACACAAAGG+AGG | - | chr8_4:46972030-46972049 | None:intergenic | 40.0% | |
| AAGCATTTGATGGAGTCATG+TGG | + | chr8_4:46972054-46972073 | Msa1328940:CDS | 40.0% | |
| CTGTGAAAGTAGTGAAGACA+TGG | + | chr8_4:46972101-46972120 | Msa1328940:CDS | 40.0% | |
| AAAGTAGTGAAGACATGGGA+AGG | + | chr8_4:46972106-46972125 | Msa1328940:CDS | 40.0% | |
| TGGATGAAGAATGGGGAAAA+TGG | + | chr8_4:46972190-46972209 | Msa1328940:CDS | 40.0% | |
| GGATGAAGAATGGGGAAAAT+GGG | + | chr8_4:46972191-46972210 | Msa1328940:CDS | 40.0% | |
| AAGGGAACTGCATCTACTTT+AGG | + | chr8_4:46972301-46972320 | Msa1328940:CDS | 40.0% | |
| AGGGAACTGCATCTACTTTA+GGG | + | chr8_4:46972302-46972321 | Msa1328940:CDS | 40.0% | |
| ! | ACGTGGAGGATGTTCGTTTT+CGG | - | chr8_4:46971248-46971267 | None:intergenic | 45.0% |
| TGGGCTCATTGGACCAAATT+GGG | + | chr8_4:46971307-46971326 | Msa1328940:CDS | 45.0% | |
| CAATTTGGGTCGACCCAATT+TGG | - | chr8_4:46971323-46971342 | None:intergenic | 45.0% | |
| AACTCCGAGTTATCGACCAT+CGG | - | chr8_4:46971355-46971374 | None:intergenic | 45.0% | |
| ATAACTCGGAGTTACCGTAC+AGG | + | chr8_4:46971362-46971381 | Msa1328940:CDS | 45.0% | |
| ATACTCCAATGTTGCATGGG+AGG | + | chr8_4:46971419-46971438 | Msa1328940:CDS | 45.0% | |
| ACAGTAGTCCAAGGAGAGTT+AGG | - | chr8_4:46971805-46971824 | None:intergenic | 45.0% | |
| CAATCCTCAACAGTAGTCCA+AGG | - | chr8_4:46971814-46971833 | None:intergenic | 45.0% | |
| CAATTCTCACCTCCTTTGTG+TGG | + | chr8_4:46972018-46972037 | Msa1328940:CDS | 45.0% | |
| TCACCTCCTTTGTGTGGATT+TGG | + | chr8_4:46972024-46972043 | Msa1328940:CDS | 45.0% | |
| ! | ACGTGGAGGATGTTCGTTTT+CGG | - | chr8_4:46971248-46971267 | None:intergenic | 45.0% |
| TGGGCTCATTGGACCAAATT+GGG | + | chr8_4:46971307-46971326 | Msa1328940:CDS | 45.0% | |
| CAATTTGGGTCGACCCAATT+TGG | - | chr8_4:46971323-46971342 | None:intergenic | 45.0% | |
| AACTCCGAGTTATCGACCAT+CGG | - | chr8_4:46971355-46971374 | None:intergenic | 45.0% | |
| ATAACTCGGAGTTACCGTAC+AGG | + | chr8_4:46971362-46971381 | Msa1328940:CDS | 45.0% | |
| ATACTCCAATGTTGCATGGG+AGG | + | chr8_4:46971419-46971438 | Msa1328940:CDS | 45.0% | |
| ACAGTAGTCCAAGGAGAGTT+AGG | - | chr8_4:46971805-46971824 | None:intergenic | 45.0% | |
| CAATCCTCAACAGTAGTCCA+AGG | - | chr8_4:46971814-46971833 | None:intergenic | 45.0% | |
| CAATTCTCACCTCCTTTGTG+TGG | + | chr8_4:46972018-46972037 | Msa1328940:CDS | 45.0% | |
| TCACCTCCTTTGTGTGGATT+TGG | + | chr8_4:46972024-46972043 | Msa1328940:CDS | 45.0% | |
| ! | ATCCGGAGAAGTTCGGGTTT+GGG | - | chr8_4:46971224-46971243 | None:intergenic | 50.0% |
| TTTCGGGATCCGGAGAAGTT+CGG | - | chr8_4:46971231-46971250 | None:intergenic | 50.0% | |
| !! | GGATGTTCGTTTTCGGGATC+CGG | - | chr8_4:46971241-46971260 | None:intergenic | 50.0% |
| ! | CGTGGAGGATGTTCGTTTTC+GGG | - | chr8_4:46971247-46971266 | None:intergenic | 50.0% |
| GTGGGCTCATTGGACCAAAT+TGG | + | chr8_4:46971306-46971325 | Msa1328940:CDS | 50.0% | |
| TGCTCCGATGGTCGATAACT+CGG | + | chr8_4:46971348-46971367 | Msa1328940:CDS | 50.0% | |
| TACCGTACAGGATGCTGTGT+CGG | + | chr8_4:46971374-46971393 | Msa1328940:CDS | 50.0% | |
| TTCCGACACAGCATCCTGTA+CGG | - | chr8_4:46971379-46971398 | None:intergenic | 50.0% | |
| AGGATGCTGTGTCGGAAGTA+CGG | + | chr8_4:46971382-46971401 | Msa1328940:CDS | 50.0% | |
| ! | GCATGGGAGGATTTTCACTG+AGG | + | chr8_4:46971432-46971451 | Msa1328940:CDS | 50.0% |
| CTCTCCTTGGACTACTGTTG+AGG | + | chr8_4:46971807-46971826 | Msa1328940:CDS | 50.0% | |
| CTACGATCGAGACACTGATG+TGG | + | chr8_4:46972146-46972165 | Msa1328940:CDS | 50.0% | |
| CTTTGTGGTCTCGTTCACCT+TGG | + | chr8_4:46972403-46972422 | Msa1328940:CDS | 50.0% | |
| ! | ATCCGGAGAAGTTCGGGTTT+GGG | - | chr8_4:46971224-46971243 | None:intergenic | 50.0% |
| TTTCGGGATCCGGAGAAGTT+CGG | - | chr8_4:46971231-46971250 | None:intergenic | 50.0% | |
| !! | GGATGTTCGTTTTCGGGATC+CGG | - | chr8_4:46971241-46971260 | None:intergenic | 50.0% |
| ! | CGTGGAGGATGTTCGTTTTC+GGG | - | chr8_4:46971247-46971266 | None:intergenic | 50.0% |
| GTGGGCTCATTGGACCAAAT+TGG | + | chr8_4:46971306-46971325 | Msa1328940:CDS | 50.0% | |
| TGCTCCGATGGTCGATAACT+CGG | + | chr8_4:46971348-46971367 | Msa1328940:CDS | 50.0% | |
| TACCGTACAGGATGCTGTGT+CGG | + | chr8_4:46971374-46971393 | Msa1328940:CDS | 50.0% | |
| TTCCGACACAGCATCCTGTA+CGG | - | chr8_4:46971379-46971398 | None:intergenic | 50.0% | |
| AGGATGCTGTGTCGGAAGTA+CGG | + | chr8_4:46971382-46971401 | Msa1328940:CDS | 50.0% | |
| ! | GCATGGGAGGATTTTCACTG+AGG | + | chr8_4:46971432-46971451 | Msa1328940:CDS | 50.0% |
| CTCTCCTTGGACTACTGTTG+AGG | + | chr8_4:46971807-46971826 | Msa1328940:CDS | 50.0% | |
| CTACGATCGAGACACTGATG+TGG | + | chr8_4:46972146-46972165 | Msa1328940:CDS | 50.0% | |
| CTTTGTGGTCTCGTTCACCT+TGG | + | chr8_4:46972403-46972422 | Msa1328940:CDS | 50.0% | |
| ! | GATCCGGAGAAGTTCGGGTT+TGG | - | chr8_4:46971225-46971244 | None:intergenic | 55.0% |
| TTCGGGATCCGGAGAAGTTC+GGG | - | chr8_4:46971230-46971249 | None:intergenic | 55.0% | |
| GTGAGGGTTAGGTTACGTGG+AGG | - | chr8_4:46971262-46971281 | None:intergenic | 55.0% | |
| ! | GATCCGGAGAAGTTCGGGTT+TGG | - | chr8_4:46971225-46971244 | None:intergenic | 55.0% |
| TTCGGGATCCGGAGAAGTTC+GGG | - | chr8_4:46971230-46971249 | None:intergenic | 55.0% | |
| GTGAGGGTTAGGTTACGTGG+AGG | - | chr8_4:46971262-46971281 | None:intergenic | 55.0% | |
| GGCCCAAACCCGAACTTCTC+CGG | + | chr8_4:46971219-46971238 | Msa1328940:CDS | 60.0% | |
| GCGGTGAGGGTTAGGTTACG+TGG | - | chr8_4:46971265-46971284 | None:intergenic | 60.0% | |
| GTGCATCTGCGGTGAGGGTT+AGG | - | chr8_4:46971273-46971292 | None:intergenic | 60.0% | |
| AACGCGTGCATCTGCGGTGA+GGG | - | chr8_4:46971278-46971297 | None:intergenic | 60.0% | |
| GCGTTCAACGCGTGCATCTG+CGG | - | chr8_4:46971284-46971303 | None:intergenic | 60.0% | |
| TTGAACGCGCGTGGGCTCAT+TGG | + | chr8_4:46971296-46971315 | Msa1328940:CDS | 60.0% | |
| GGCCCAAACCCGAACTTCTC+CGG | + | chr8_4:46971219-46971238 | Msa1328940:CDS | 60.0% | |
| GCGGTGAGGGTTAGGTTACG+TGG | - | chr8_4:46971265-46971284 | None:intergenic | 60.0% | |
| GTGCATCTGCGGTGAGGGTT+AGG | - | chr8_4:46971273-46971292 | None:intergenic | 60.0% | |
| AACGCGTGCATCTGCGGTGA+GGG | - | chr8_4:46971278-46971297 | None:intergenic | 60.0% | |
| GCGTTCAACGCGTGCATCTG+CGG | - | chr8_4:46971284-46971303 | None:intergenic | 60.0% | |
| TTGAACGCGCGTGGGCTCAT+TGG | + | chr8_4:46971296-46971315 | Msa1328940:CDS | 60.0% | |
| CAACGCGTGCATCTGCGGTG+AGG | - | chr8_4:46971279-46971298 | None:intergenic | 65.0% | |
| ATGCACGCGTTGAACGCGCG+TGG | + | chr8_4:46971287-46971306 | Msa1328940:CDS | 65.0% | |
| TGCACGCGTTGAACGCGCGT+GGG | + | chr8_4:46971288-46971307 | Msa1328940:CDS | 65.0% | |
| CAACGCGTGCATCTGCGGTG+AGG | - | chr8_4:46971279-46971298 | None:intergenic | 65.0% | |
| ATGCACGCGTTGAACGCGCG+TGG | + | chr8_4:46971287-46971306 | Msa1328940:CDS | 65.0% | |
| TGCACGCGTTGAACGCGCGT+GGG | + | chr8_4:46971288-46971307 | Msa1328940:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 46971217 | 46972437 | 46971217 | ID=Msa1328940;Name=Msa1328940 |
| chr8_4 | mRNA | 46971217 | 46972437 | 46971217 | ID=Msa1328940-mRNA-1;Parent=Msa1328940;Name=Msa1328940-mRNA-1;_AED=0.35;_eAED=0.35;_QI=0|0|0|0.5|1|1|2|0|333 |
| chr8_4 | exon | 46971217 | 46971461 | 46971217 | ID=Msa1328940-mRNA-1:exon:13462;Parent=Msa1328940-mRNA-1 |
| chr8_4 | exon | 46971681 | 46972437 | 46971681 | ID=Msa1328940-mRNA-1:exon:13463;Parent=Msa1328940-mRNA-1 |
| chr8_4 | CDS | 46971217 | 46971461 | 46971217 | ID=Msa1328940-mRNA-1:cds;Parent=Msa1328940-mRNA-1 |
| chr8_4 | CDS | 46971681 | 46972437 | 46971681 | ID=Msa1328940-mRNA-1:cds;Parent=Msa1328940-mRNA-1 |
| Gene Sequence |
| Protein sequence |
