AlfalfaGEDB | Msa1329000

M. sativa cultivar zhongmu-4 / Msa1329000

KEGG: -
GO: -
PFAM: PF08263.15

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1329000	XP_013457458.1	94.472	796	24	4	1	796	1	776	0.0	1518

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1329000	sp\|C0LGS3\|Y4372_ARATH	56.692	792	281	14	23	796	21	768	0.0	834

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1329000	A0A072UNT7	94.472	796	24	4	1	796	1	776	0.0	1518

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000320	Msa1329000	0.965205	2.644195e-124	-8.615850e-47
Msa1256350	Msa1329000	0.882173	1.300316e-70	-8.615850e-47
Msa1296590	Msa1329000	0.982820	4.361997e-156	-8.615850e-47

Showing 1 to 3 of 3 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1329000	MtrunA17_Chr4g0053411	94.472	796	24	4	1	796	1	776	0.0	1518
Msa1329000	MtrunA17_Chr1g0208121	50.260	770	327	15	36	788	4	734	0.0	718
Msa1329000	MtrunA17_Chr1g0209211	36.985	776	378	24	23	783	24	703	2.43e-132	410
Msa1329000	MtrunA17_Chr4g0005411	35.641	780	397	18	27	783	23	720	3.68e-130	405
Msa1329000	MtrunA17_Chr7g0243401	35.914	788	391	22	23	783	20	720	2.27e-128	400
Msa1329000	MtrunA17_Chr5g0437741	30.760	816	389	26	31	791	79	773	1.14e-80	275
Msa1329000	MtrunA17_Chr1g0209521	29.625	773	354	24	31	783	34	636	1.28e-73	253
Msa1329000	MtrunA17_Chr3g0128551	27.764	796	370	24	3	783	8	613	6.28e-69	239
Msa1329000	MtrunA17_Chr5g0434551	29.057	795	366	26	1	783	1	609	7.91e-67	233
Msa1329000	MtrunA17_Chr3g0134221	29.376	657	342	22	138	783	102	647	1.37e-64	228

Showing 1 to 10 of 872 entries

Previous1 2 3 4 5…88Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1329000	AT4G37250.1	56.692	792	281	14	23	796	21	768	0.0	834
Msa1329000	AT2G23300.1	58.616	795	256	15	23	796	30	772	0.0	767
Msa1329000	AT5G67280.1	52.859	787	308	14	7	785	14	745	0.0	741
Msa1329000	AT4G34220.1	45.568	801	364	17	2	783	5	752	0.0	620
Msa1329000	AT2G15300.1	47.006	785	326	22	23	783	23	741	0.0	604
Msa1329000	AT2G01210.1	35.652	805	400	21	5	785	2	712	6.02e-141	433
Msa1329000	AT1G25320.1	34.793	799	395	23	6	783	5	698	9.83e-130	403
Msa1329000	AT1G67510.1	33.629	788	407	20	22	783	21	718	7.88e-120	378
Msa1329000	AT1G66830.1	33.333	795	399	21	11	788	5	685	8.28e-114	361
Msa1329000	AT2G42290.1	31.047	802	376	23	1	783	1	644	2.00e-99	322

Showing 1 to 10 of 837 entries

Previous1 2 3 4 5…84Next

Find 195 sgRNAs with CRISPR-Local

Find 582 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACATTGGTTCAGGGTTA+GGG	0.426670	8_4:+47043881	None:intergenic
AAAACTATACTACTATATGA+GGG	0.624521	8_4:+47044116	None:intergenic
AAACAGAGTGGTTTGAGAAA+AGG	0.451410	8_4:-47042931	Msa1329000:CDS
AAACTAAAGGGTTTACAAGG+TGG	0.626988	8_4:-47042750	Msa1329000:CDS
AAAGAATGATACACCGTTTA+GGG	0.277291	8_4:-47043712	Msa1329000:CDS
AAAGAGTAAACATCCCATTT+TGG	0.177830	8_4:+47040741	None:intergenic
AAATGGGATGTTTACTCTTT+TGG	0.163879	8_4:-47040738	Msa1329000:CDS
AAATGGTGTTGAAAGGTTCA+AGG	0.480271	8_4:-47042422	Msa1329000:CDS
AACAGAAGATGAAGAATCCT+CGG	0.505245	8_4:-47042710	Msa1329000:CDS
AACATTGTTTGAAGAGAGAA+CGG	0.519601	8_4:+47043980	None:intergenic

Showing 1 to 10 of 195 entries

Previous1 2 3 4 5…20Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
ATATTTGCAACAAGAGGTTT+GGG	-	chr8_4:47040390-47040409	Msa1329000:three_prime_UTR	30.0%
ACAATATAATTCCTTCCACA+TGG	-	chr8_4:47040518-47040537	Msa1329000:CDS	30.0%
AACATTGTTTGAAGAGAGAA+CGG	+	chr8_4:47040599-47040618	None:intergenic	30.0%
AAAGAATGATACACCGTTTA+GGG	-	chr8_4:47040864-47040883	Msa1329000:CDS	30.0%
AGAAAACTAAGCTCAGAATT+TGG	+	chr8_4:47041024-47041043	None:intergenic	30.0%
ATTGTTCTTAAACGAAGCTA+CGG	+	chr8_4:47041184-47041203	None:intergenic	30.0%
GCTAAAGAGAAAAAAAGATG+CGG	-	chr8_4:47041743-47041762	Msa1329000:intron	30.0%
TCTTCAACCTTAGAAACTAA+AGG	-	chr8_4:47041813-47041832	Msa1329000:intron	30.0%
CTTCAACCTTAGAAACTAAA+GGG	-	chr8_4:47041814-47041833	Msa1329000:intron	30.0%
TAGAAACTAAAGGGTTTACA+AGG	-	chr8_4:47041823-47041842	Msa1329000:intron	30.0%

Showing 1 to 10 of 582 entries

Previous1 2 3 4 5…59Next

Chromosome	Type	Strat	End	Strand	Name
chr8_4	gene	47040246	47044352	47040246	ID=Msa1329000;Name=Msa1329000
chr8_4	mRNA	47040246	47044352	47040246	ID=Msa1329000-mRNA-1;Parent=Msa1329000;Name=Msa1329000-mRNA-1;_AED=0.01;_eAED=0.01;_QI=406\|0\|0.66\|0.66\|1\|1\|3\|209\|796
chr8_4	exon	47040246	47041137	47040246	ID=Msa1329000-mRNA-1:exon:13515;Parent=Msa1329000-mRNA-1
chr8_4	exon	47042137	47042178	47042137	ID=Msa1329000-mRNA-1:exon:13514;Parent=Msa1329000-mRNA-1
chr8_4	exon	47042281	47044352	47042281	ID=Msa1329000-mRNA-1:exon:13513;Parent=Msa1329000-mRNA-1
chr8_4	five_prime_UTR	47043947	47044352	47043947	ID=Msa1329000-mRNA-1:five_prime_utr;Parent=Msa1329000-mRNA-1
chr8_4	CDS	47042281	47043946	47042281	ID=Msa1329000-mRNA-1:cds;Parent=Msa1329000-mRNA-1
chr8_4	CDS	47042137	47042178	47042137	ID=Msa1329000-mRNA-1:cds;Parent=Msa1329000-mRNA-1
chr8_4	CDS	47040455	47041137	47040455	ID=Msa1329000-mRNA-1:cds;Parent=Msa1329000-mRNA-1
chr8_4	three_prime_UTR	47040246	47040454	47040246	ID=Msa1329000-mRNA-1:three_prime_utr;Parent=Msa1329000-mRNA-1

Gene Sequence

>Msa1329000

ATGAAAACAACACTTTCTCTTCTTCTCACATTCCTATCTTTAACCCTAACCCTGAACCAATGTTTTTCACTCACTAACGATGGTGTTTTGTTACTTTCTTTCAAATATGCTGTTCTTAACGACCCTTTATTGGTGCTTTCAAATTGGAATTATAGCGACCAAACACCATGTTCATGGAACGGTGTTTCTTGTTCCATAATAACACCAAACACAAAGAATGATACACCGTTTAGGGTTACTGGTTTATCACTACCGAATTCTCAGCTTGTTAGTTCAATTCCTTCTGATCTTGGTTCCATTGAGCACCTTCAAATTCTTGATCTTTCTAACAATTCCATTAATGGGTCTCTTCCTACAAACCTTTTTCAGCCAAATTCTGAGCTTAGTTTTCTAAATTTTTCGAATAATTTGTTAACAGGGGAAGTTCCAGAGTCTTTAACAGAGCTTAGAAATCTTCAGTTTCTTAACTTTTCAGACAATTCTTTCACTGGAAAACTACCAAACAATCTCTCAAACATGCAAAACTTAACCGTAGCTTCGTTTAAGAACAATTACTTCACTGGTTTTCTTCCTAAAGATTTGCGAAATTTACAAGTTTTGGATCTGTCTTCCAATTTGTTAAACGGGTCGTTAACTCAAGATTTTGGTGGTGATTCCTTGCGTTACTTGAATGTTTCTTACAATAGATTTTCCGGTGAAATTCCACCGGAATTCGCCGAGAAAATTCCGAGTAACGCAACCGTTGATCTATCATTCAACAATCTCACTGGAGAAATACCAGAGTCCCCTGTTTTGTTGAACCAGGAAACAAAAGTGTTTTCTGGTAATAGTGATCTATGTGGTGAACCAATGAAAAATCCTTGTTCTATTCCTTCTTCTCCTTCTTCTGATCCTCAAGGTTCTTCTCCAACTTCTCCTCCTGCAATCGCCGCAATGCCGAAGACTTTTGATAATGATTCTCCTCAATCACCAACAACAGAGTCTTCAGAGAAGAAACAGAGTGGTTTGAGAAAAGGAACTATTATAGGAATTGTTATTGGTGATTTCGTTGGAATTGGAATCTTAGCTATGGTTTTTGTTTATGTTTATAAGCTAAAGAGAAAAAAAGATGCGGAAAATGCAATAAAAGATGAAGCTGCTACTGCAAGAAGTGAGAATTCTTCTTCAACCTTAGAAACTAAAGGGTTTACAAGGTGGTCTTGTTTAAGAAAAAGAACAGAAGATGAAGAATCCTCGGAGACACAAAGTTCTTCAGATAGTGACGTGGAAACATCACAAAAAAATGTTGATGGTGTTGAGAATCAAAAGCAAGGTGAGAATAAAACTGGTACTGGTACGGGTTCAGGTACGGGTACTCTGGTTATAGTAGACGGTGAAAGAGAGCTTGAAGTGGAAACACTTTTGAAAGCTTCTGCATATATTTTAGGAGCTACTGGTTCAAGTATAATGTATAAAGCTGTTCTTGAAGATGGAACTTCTTTAGCAGTTCGGAGAATTGGTGAAAATGGTGTTGAAAGGTTCAAGGATTTTGAGAATCAAGTTCGGGTTATAGCTAAATTAGTTCATCCAAATTTGGTTAGAGTTCGTGGTTTTTACTGGGGACATGATGAAAAGCTCATTATCTATGATTATGTTCCTAATGGTTGTCTTGCCAACGTTCGTTACAGATATGATATTGTTATGAGTCATGACGTTGATGGAGAAGTAGGGAAAGTGGGGTCCTCACCTAGCCACTTACCGTGGGAAATACGGCTCAAGATAGCAAAAGGTGTGGCACGTGGGCTGACTTATCTCCACGAGAAGAAGCACGTGCATGGAAACTTGAAGCCTACCAATATTCTATTGGGCAATGATATGGAGCCCAAAATTGGAGACTTTGGGCTTGAAAGAATAGTAACAGGTGACACAAGTTATAGTAAAGCTGGAGGTTCAGCACGTATTTTTGGAAGTAAAAGATCATCAGCCTCACGTGATAGTTTTCAAGATGTTACTTGTGGGCCTAGCCCAAGCCCAAGCCCAAGTTCCATAGGTGGTGTGTCACCTTATCATGCTCCTGAATCACTTAGGAATTTGAAACCTCACCCAAAATGGGATGTTTACTCTTTTGGGGTAATGTTTCTAGAACTATTAACGGGGAAGATTGTGGTTTTGGATGATATGGGCCTAGGCCCAGCGGTTTTGGTTGAGGATAAGAATCGAGCTTTGAGGATGGTTGACGTGGCGATTCGTGCTGATATGGAAGGTAAGGAGGATGCCTTGTTGGCTTATTTTAAGTTAGGGTATAGTTGTGTGACTAATGTACCTCAAAAAAGGCCACAAATGAAAGAGGTGTTGCAAGTACTTGAAAAAACACCATCTACGATTTCTTCATCGTATTATTATAGTCACTGA

Protein sequence

>Msa1329000

MKTTLSLLLTFLSLTLTLNQCFSLTNDGVLLLSFKYAVLNDPLLVLSNWNYSDQTPCSWNGVSCSIITPNTKNDTPFRVTGLSLPNSQLVSSIPSDLGSIEHLQILDLSNNSINGSLPTNLFQPNSELSFLNFSNNLLTGEVPESLTELRNLQFLNFSDNSFTGKLPNNLSNMQNLTVASFKNNYFTGFLPKDLRNLQVLDLSSNLLNGSLTQDFGGDSLRYLNVSYNRFSGEIPPEFAEKIPSNATVDLSFNNLTGEIPESPVLLNQETKVFSGNSDLCGEPMKNPCSIPSSPSSDPQGSSPTSPPAIAAMPKTFDNDSPQSPTTESSEKKQSGLRKGTIIGIVIGDFVGIGILAMVFVYVYKLKRKKDAENAIKDEAATARSENSSSTLETKGFTRWSCLRKRTEDEESSETQSSSDSDVETSQKNVDGVENQKQGENKTGTGTGSGTGTLVIVDGERELEVETLLKASAYILGATGSSIMYKAVLEDGTSLAVRRIGENGVERFKDFENQVRVIAKLVHPNLVRVRGFYWGHDEKLIIYDYVPNGCLANVRYRYDIVMSHDVDGEVGKVGSSPSHLPWEIRLKIAKGVARGLTYLHEKKHVHGNLKPTNILLGNDMEPKIGDFGLERIVTGDTSYSKAGGSARIFGSKRSSASRDSFQDVTCGPSPSPSPSSIGGVSPYHAPESLRNLKPHPKWDVYSFGVMFLELLTGKIVVLDDMGLGPAVLVEDKNRALRMVDVAIRADMEGKEDALLAYFKLGYSCVTNVPQKRPQMKEVLQVLEKTPSTISSSYYYSH*